Query 002813
Match_columns 877
No_of_seqs 174 out of 294
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 02:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f6ma1 a.2.17.1 (A:322-385) V 20.3 47 0.0034 25.4 4.0 15 749-763 15-29 (64)
2 d1st6a4 a.24.9.1 (A:372-488) V 17.5 1.7E+02 0.013 24.7 7.5 43 504-547 62-104 (117)
3 d1st6a3 a.24.9.1 (A:253-371) V 14.9 2E+02 0.015 24.3 7.3 44 503-547 70-113 (119)
4 d2j9ua1 a.24.28.1 (A:148-241) 5.9 3E+02 0.022 22.2 4.6 31 315-345 28-62 (94)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 5.3 2.7E+02 0.02 20.4 3.9 51 501-553 5-59 (66)
6 d1i17a_ d.6.1.1 (A:) Prion-lik 5.1 1.5E+02 0.011 24.6 2.2 20 476-495 52-71 (107)
7 d1j1ja_ a.118.16.1 (A:) Transl 4.9 9.7E+02 0.071 21.1 15.8 32 586-617 123-154 (217)
8 d1jl7a_ a.1.1.2 (A:) Glycera g 4.9 5.2E+02 0.038 21.0 6.1 46 314-359 55-100 (147)
9 d1h2vc2 a.118.1.14 (C:291-480) 4.8 9.2E+02 0.067 21.4 8.0 49 331-380 116-171 (190)
10 d1io1a_ e.32.1.1 (A:) Phase 1 4.8 4.1E+02 0.03 24.7 5.9 40 758-801 26-65 (395)
No 1
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.27 E-value=47 Score=25.43 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHH
Q 002813 749 FLINDSIYLLDESLN 763 (877)
Q Consensus 749 lLiND~tfLLDEsL~ 763 (877)
.-|.|++|.||++|.
T Consensus 15 ~AieDaiy~L~~aL~ 29 (64)
T d2f6ma1 15 YALTDTIEALSRMLH 29 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999999985
No 2
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.48 E-value=1.7e+02 Score=24.66 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002813 504 HLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQ 547 (877)
Q Consensus 504 ~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 547 (877)
++-.+|..+-.+|..+.+ +++|++|++++.-+++.+.+..|..
T Consensus 62 ~lc~ei~~lt~qLadLr~-~GkG~sPeA~~lA~qi~~kL~~L~~ 104 (117)
T d1st6a4 62 RSLGEISALTAKLSDLRR-HGKGDSPEARALAKQIATSLQNLQS 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH-HSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443 3668899887666667777766654
No 3
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.93 E-value=2e+02 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002813 503 KHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQ 547 (877)
Q Consensus 503 ~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 547 (877)
.++-.+|..+-.+|..+.+ +++|++|++++.-+++.+.+..|..
T Consensus 70 l~~c~ei~~lt~qLadLr~-~G~G~sPeA~~lA~qi~~kL~~L~~ 113 (119)
T d1st6a3 70 LGTCKTLGQMTDQLADLRA-RGQGATPMAMQKAQQVSQGLDLLTA 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555543 3558899987766777777776654
No 4
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.86 E-value=3e+02 Score=22.16 Aligned_cols=31 Identities=13% Similarity=0.434 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhc-C---hhhHHHHHHHHHHH
Q 002813 315 RGLYKDLGDVLLALLK-N---TDTRENVLEYLAEV 345 (877)
Q Consensus 315 ~~~~~~L~~I~~~Llr-~---~~sRe~vL~w~a~v 345 (877)
..+|-.|.+++.+|-| + -+.|.+|.+|+.+.
T Consensus 28 DqLhPlL~dL~~slnrl~~~dfegk~kv~~Wl~~L 62 (94)
T d2j9ua1 28 DQLHPLLAELLISINRVTRDDFENRSKLIDWIVRI 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 3455555555555555 3 37999999998765
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.34 E-value=2.7e+02 Score=20.38 Aligned_cols=51 Identities=2% Similarity=-0.126 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHH----HHHHHHHHHHHHHHHHhHHHHh
Q 002813 501 DFKHLVQDISRAEDTLATLKATQGQTPSSQL----NLEITRIEKEIELSSQEKLCYE 553 (877)
Q Consensus 501 ~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~----~~~l~~~~~~~~~l~~~~~~~~ 553 (877)
...|+.+.+..++.+++.++..-. ++... ...+..-+..++.+....-.++
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL~--N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~ 59 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKLA--SPGFREKAPKEVVEAEEARLKENLEQAERIR 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--STTHHHHSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--ChHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777776654221 22332 3345555555555554444333
No 6
>d1i17a_ d.6.1.1 (A:) Prion-like protein Doppel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.15 E-value=1.5e+02 Score=24.57 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=16.8
Q ss_pred CCCChhhHHHHHHHHHHhch
Q 002813 476 KYPFICECFFMTARVLNLGL 495 (877)
Q Consensus 476 ~~nFitecFFLT~~~lhlG~ 495 (877)
+-+|++.|+-+|.+.+...+
T Consensus 52 q~~FV~dCvNiTv~~~~~~~ 71 (107)
T d1i17a_ 52 KEMLVTSCVNATQAANQAEF 71 (107)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHHhhHHHHHHhhccc
Confidence 44799999999999987754
No 7
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.88 E-value=9.7e+02 Score=21.15 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.5
Q ss_pred CCCCCCCCcccccchhHHHHhHHHHHHHHhhc
Q 002813 586 MPLPDTCPMEFACMPEHFVEDAMELLIFASRI 617 (877)
Q Consensus 586 lPLp~~~p~~f~~lPE~~iEdi~d~~~fi~r~ 617 (877)
+..|.+.+..|..=||-|+-+++|+.-=++|+
T Consensus 123 l~~~~~~~~~~~v~~~dYL~Gl~DltGEL~R~ 154 (217)
T d1j1ja_ 123 LGIEPDREKGFHLDVEDYLSGVLILASELSRL 154 (217)
T ss_dssp HTCCCSSSSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566667778888999999999988766654
No 8
>d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}
Probab=4.87 E-value=5.2e+02 Score=21.00 Aligned_cols=46 Identities=7% Similarity=0.041 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHhchhhhccccCC
Q 002813 314 MRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359 (877)
Q Consensus 314 l~~~~~~L~~I~~~Llr~~~sRe~vL~w~a~vl~~N~~R~k~~~d~ 359 (877)
++.+...+...+..++.+-+..+.+..++..+-....+|+...++|
T Consensus 55 ~~~h~~~v~~~l~~~i~~l~d~~~l~~~l~~lg~~H~~~g~~~V~~ 100 (147)
T d1jl7a_ 55 VAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGYGNKHIKA 100 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHGGGSTTSCCCG
T ss_pred HHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHhhhhccccCH
Confidence 4556667777788888876667778888887777666666544444
No 9
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=9.2e+02 Score=21.44 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=31.1
Q ss_pred ChhhHHHHHHHHHHHHHhchhhhccccC-------CCccCChhhHHHHHHHHHHhhh
Q 002813 331 NTDTRENVLEYLAEVINRNSSRAHIQVE-------PLSCASSGMFVNLSAVMLRLCD 380 (877)
Q Consensus 331 ~~~sRe~vL~w~a~vl~~N~~R~k~~~d-------~~~~aSDGFmlNl~~VLlrL~~ 380 (877)
+.+++.++++||++=+. |-+-+=-|.+ +.....--|+-++..=.+||+-
T Consensus 116 d~e~~~Rf~dWfShHLS-NF~f~W~W~eW~~~l~~~~~~Pk~~Fir~~l~k~~RLSy 171 (190)
T d1h2vc2 116 NTTCVDRFINWFSHHLS-NFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSY 171 (190)
T ss_dssp CHHHHHHHHHHHHHHHT-TTTTCCCGGGGGGGTTSCTTSHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHhh-ccccccchHHHHHHHhCCccCchHHHHHHHHHHHHHhhH
Confidence 68999999999998775 3222222222 1112234688888888888863
No 10
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=4.79 E-value=4.1e+02 Score=24.73 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhcCCCHHHHHHHHHHHHHhhh
Q 002813 758 LDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQEN 801 (877)
Q Consensus 758 LDEsL~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~~l~~~er 801 (877)
|+|.-+-|.+||++-.+-+| ..+++++|+..+.+++++..
T Consensus 26 l~~~~~iL~r~reLavqaan----~t~~~~dr~ai~~E~~~l~~ 65 (395)
T d1io1a_ 26 LNEINNNLQRVRELAVQSAN----STNSQSDLDSIQAEITQRLN 65 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHH
Confidence 55666667777777666543 35888999877776665543
Done!