Query 002814
Match_columns 877
No_of_seqs 920 out of 4356
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 11:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.6E-78 3.4E-83 715.2 77.3 631 156-846 370-1022(1060)
2 PLN03077 Protein ECB2; Provisi 100.0 1.6E-74 3.5E-79 697.7 54.5 632 139-854 137-779 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3.2E-70 7E-75 644.6 56.8 529 157-857 88-619 (697)
4 PLN03218 maturation of RBCL 1; 100.0 4E-64 8.6E-69 593.1 68.9 523 128-675 376-910 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 1.5E-64 3.2E-69 610.9 57.8 526 159-740 124-652 (857)
6 PLN03081 pentatricopeptide (PP 100.0 4.2E-58 9.1E-63 541.6 55.5 464 125-675 90-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.7E-33 1.7E-37 342.4 71.8 565 153-739 326-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-31 3.1E-36 331.2 71.8 588 136-744 275-868 (899)
9 PRK11447 cellulose synthase su 100.0 3.5E-24 7.6E-29 265.7 65.5 435 135-578 41-529 (1157)
10 PRK11447 cellulose synthase su 100.0 3.3E-23 7.1E-28 257.0 67.1 564 162-741 118-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.8E-21 3.8E-26 230.1 60.9 547 136-743 58-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 1.3E-22 2.9E-27 211.0 39.8 460 143-686 35-497 (966)
13 PRK09782 bacteriophage N4 rece 99.9 4.7E-20 1E-24 218.1 62.4 551 130-742 86-740 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.1E-21 2.4E-26 204.1 37.5 433 127-579 53-491 (966)
15 KOG2002 TPR-containing nuclear 99.9 6.1E-19 1.3E-23 194.1 55.3 557 158-745 164-748 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-18 4E-23 201.6 49.5 253 417-742 307-571 (615)
17 PRK11788 tetratricopeptide rep 99.9 2.3E-19 5E-24 198.7 37.2 309 238-560 45-363 (389)
18 PRK11788 tetratricopeptide rep 99.9 2.6E-19 5.7E-24 198.2 37.0 301 202-510 44-354 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 8.6E-18 1.9E-22 196.1 51.0 405 159-576 130-574 (615)
20 KOG2002 TPR-containing nuclear 99.9 5.4E-17 1.2E-21 179.0 50.1 524 172-742 146-709 (1018)
21 PRK15174 Vi polysaccharide exp 99.9 1.9E-17 4.1E-22 192.3 46.9 329 198-537 47-380 (656)
22 PRK15174 Vi polysaccharide exp 99.9 3.2E-17 7E-22 190.4 48.5 333 159-504 45-382 (656)
23 PRK10049 pgaA outer membrane p 99.8 5.9E-17 1.3E-21 192.4 47.4 411 153-579 12-462 (765)
24 PRK10049 pgaA outer membrane p 99.8 1.4E-15 3.1E-20 180.6 52.2 375 191-576 13-425 (765)
25 PRK14574 hmsH outer membrane p 99.8 8.3E-15 1.8E-19 170.3 51.8 443 126-580 38-520 (822)
26 PRK14574 hmsH outer membrane p 99.8 5.2E-14 1.1E-18 163.8 54.8 448 162-710 40-516 (822)
27 KOG2003 TPR repeat-containing 99.8 1E-15 2.3E-20 154.2 32.1 470 160-685 205-700 (840)
28 KOG0495 HAT repeat protein [RN 99.8 1.2E-12 2.5E-17 138.6 52.0 362 206-577 419-786 (913)
29 KOG2076 RNA polymerase III tra 99.7 1.7E-12 3.7E-17 143.2 54.2 365 166-537 149-554 (895)
30 KOG2076 RNA polymerase III tra 99.7 3.8E-12 8.2E-17 140.5 54.7 362 132-500 149-552 (895)
31 KOG0495 HAT repeat protein [RN 99.7 1.9E-11 4.1E-16 129.7 53.2 328 240-578 418-753 (913)
32 KOG4422 Uncharacterized conser 99.7 2.8E-12 6.2E-17 129.3 43.6 321 160-504 120-463 (625)
33 KOG1915 Cell cycle control pro 99.6 7.6E-11 1.6E-15 120.6 47.9 398 158-571 75-498 (677)
34 KOG4422 Uncharacterized conser 99.6 4.3E-12 9.4E-17 128.0 38.3 363 195-565 209-617 (625)
35 KOG1155 Anaphase-promoting com 99.6 1.9E-11 4.2E-16 125.0 40.3 361 190-567 161-530 (559)
36 KOG2003 TPR repeat-containing 99.6 2.2E-12 4.7E-17 130.6 31.2 384 163-558 244-708 (840)
37 KOG2047 mRNA splicing factor [ 99.6 1.7E-09 3.7E-14 115.1 52.7 535 156-735 102-716 (835)
38 KOG0547 Translocase of outer m 99.6 8.8E-12 1.9E-16 128.1 32.0 222 450-743 337-567 (606)
39 KOG1915 Cell cycle control pro 99.6 9.8E-10 2.1E-14 112.7 45.4 354 176-576 59-436 (677)
40 PRK10747 putative protoheme IX 99.5 2.8E-11 6.1E-16 132.7 36.6 283 279-573 99-390 (398)
41 KOG0547 Translocase of outer m 99.5 7.3E-11 1.6E-15 121.5 36.3 399 160-575 119-568 (606)
42 KOG1155 Anaphase-promoting com 99.5 1E-09 2.2E-14 112.6 42.6 332 223-572 159-494 (559)
43 PRK10747 putative protoheme IX 99.5 9.6E-11 2.1E-15 128.6 38.5 220 308-536 162-388 (398)
44 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.6E-16 132.8 34.3 292 204-502 95-398 (409)
45 TIGR00540 hemY_coli hemY prote 99.5 7.6E-11 1.7E-15 130.1 35.7 291 239-537 95-398 (409)
46 KOG1126 DNA-binding cell divis 99.5 9.6E-12 2.1E-16 133.4 27.0 282 208-505 334-622 (638)
47 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.4E-18 145.1 11.9 258 200-465 15-274 (280)
48 KOG1126 DNA-binding cell divis 99.5 6.4E-12 1.4E-16 134.7 24.8 287 279-577 334-624 (638)
49 PF13429 TPR_15: Tetratricopep 99.5 2E-13 4.4E-18 143.0 13.2 259 306-571 15-275 (280)
50 KOG1173 Anaphase-promoting com 99.5 7.3E-10 1.6E-14 116.6 38.5 506 155-719 15-529 (611)
51 COG2956 Predicted N-acetylgluc 99.5 2.2E-10 4.8E-15 112.2 31.3 288 169-466 48-345 (389)
52 KOG1174 Anaphase-promoting com 99.5 3.3E-09 7.2E-14 107.1 40.1 273 368-680 231-506 (564)
53 COG2956 Predicted N-acetylgluc 99.5 5E-10 1.1E-14 109.7 32.7 278 266-555 39-326 (389)
54 KOG4162 Predicted calmodulin-b 99.4 2E-08 4.3E-13 109.8 46.8 485 238-742 237-783 (799)
55 KOG2047 mRNA splicing factor [ 99.4 9.5E-08 2.1E-12 102.1 50.3 525 173-741 85-686 (835)
56 KOG1173 Anaphase-promoting com 99.4 3.5E-09 7.7E-14 111.6 36.4 453 154-656 47-533 (611)
57 COG3071 HemY Uncharacterized e 99.4 9.2E-09 2E-13 104.4 37.4 286 276-572 97-389 (400)
58 COG3071 HemY Uncharacterized e 99.4 3E-09 6.5E-14 107.9 33.7 286 206-502 97-389 (400)
59 KOG1156 N-terminal acetyltrans 99.4 1.2E-07 2.6E-12 101.8 45.1 222 238-467 51-282 (700)
60 KOG1156 N-terminal acetyltrans 99.3 5.5E-08 1.2E-12 104.3 42.0 399 162-577 14-438 (700)
61 PRK12370 invasion protein regu 99.3 8.7E-10 1.9E-14 126.5 31.1 149 244-396 320-468 (553)
62 KOG2376 Signal recognition par 99.3 3.7E-08 8E-13 104.5 37.6 455 163-704 19-517 (652)
63 KOG3785 Uncharacterized conser 99.3 2E-07 4.4E-12 92.5 39.8 372 160-564 61-448 (557)
64 KOG4318 Bicoid mRNA stability 99.3 2.5E-08 5.5E-13 110.1 37.0 258 194-489 26-286 (1088)
65 KOG1129 TPR repeat-containing 99.3 2.3E-09 4.9E-14 105.0 24.9 229 197-433 227-458 (478)
66 KOG1127 TPR repeat-containing 99.3 1.3E-07 2.8E-12 105.8 41.0 563 144-742 480-1104(1238)
67 PRK12370 invasion protein regu 99.2 3E-09 6.6E-14 122.0 28.7 251 242-504 275-536 (553)
68 TIGR02521 type_IV_pilW type IV 99.2 4.9E-09 1.1E-13 106.6 27.5 198 335-536 32-230 (234)
69 TIGR02521 type_IV_pilW type IV 99.2 5.7E-09 1.2E-13 106.1 27.4 200 368-571 30-230 (234)
70 KOG4318 Bicoid mRNA stability 99.2 6.2E-09 1.3E-13 114.8 28.4 277 250-563 12-290 (1088)
71 PF12569 NARP1: NMDA receptor- 99.2 2.9E-08 6.3E-13 109.9 33.4 295 158-465 6-331 (517)
72 KOG3785 Uncharacterized conser 99.2 8.5E-07 1.8E-11 88.2 38.7 391 152-576 87-493 (557)
73 KOG1129 TPR repeat-containing 99.2 3.2E-09 6.9E-14 104.0 20.1 232 300-537 224-457 (478)
74 KOG4162 Predicted calmodulin-b 99.2 8.5E-06 1.8E-10 89.8 48.1 378 295-709 319-785 (799)
75 KOG1840 Kinesin light chain [C 99.2 2.8E-08 6E-13 108.5 29.5 249 405-740 200-477 (508)
76 KOG1174 Anaphase-promoting com 99.2 1.4E-06 3.1E-11 88.6 38.9 268 298-575 231-502 (564)
77 KOG2376 Signal recognition par 99.1 1.6E-06 3.5E-11 92.4 39.7 448 198-735 17-513 (652)
78 KOG1840 Kinesin light chain [C 99.1 2.3E-08 5.1E-13 109.1 27.1 240 300-573 200-479 (508)
79 PF13041 PPR_2: PPR repeat fam 99.1 1.5E-10 3.2E-15 84.9 6.9 50 507-556 1-50 (50)
80 KOG0548 Molecular co-chaperone 99.1 1.5E-07 3.3E-12 99.2 31.6 425 162-655 8-469 (539)
81 PF12569 NARP1: NMDA receptor- 99.1 5.1E-07 1.1E-11 100.1 37.0 292 199-502 10-333 (517)
82 PF13041 PPR_2: PPR repeat fam 99.1 1.8E-10 4E-15 84.4 6.5 47 368-414 2-48 (50)
83 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.6E-12 99.6 28.1 222 168-399 38-266 (296)
84 KOG0624 dsRNA-activated protei 99.0 1.3E-06 2.8E-11 86.6 31.7 328 335-714 39-376 (504)
85 KOG4340 Uncharacterized conser 99.0 5.1E-07 1.1E-11 87.7 28.4 36 714-749 415-450 (459)
86 KOG0624 dsRNA-activated protei 99.0 7E-06 1.5E-10 81.6 36.4 205 345-577 166-374 (504)
87 KOG0548 Molecular co-chaperone 99.0 6.1E-07 1.3E-11 94.8 30.2 397 306-724 9-471 (539)
88 KOG3617 WD40 and TPR repeat-co 99.0 8.5E-06 1.9E-10 89.6 38.9 57 660-716 1306-1368(1416)
89 PRK11189 lipoprotein NlpI; Pro 99.0 1.8E-07 3.8E-12 98.3 26.1 204 157-373 65-274 (296)
90 cd05804 StaR_like StaR_like; a 99.0 3E-06 6.5E-11 92.5 35.7 194 162-361 12-213 (355)
91 KOG1127 TPR repeat-containing 99.0 2.8E-06 6.2E-11 95.5 34.8 415 279-738 473-909 (1238)
92 KOG1914 mRNA cleavage and poly 98.9 3.5E-05 7.6E-10 81.5 39.8 421 146-575 10-503 (656)
93 COG3063 PilF Tfp pilus assembl 98.9 6E-07 1.3E-11 84.8 23.9 202 372-577 38-240 (250)
94 COG3063 PilF Tfp pilus assembl 98.9 9.3E-07 2E-11 83.5 24.7 193 199-396 41-234 (250)
95 cd05804 StaR_like StaR_like; a 98.9 4.9E-06 1.1E-10 90.8 35.1 203 190-398 3-215 (355)
96 KOG2053 Mitochondrial inherita 98.9 0.00028 6.1E-09 79.5 48.7 224 166-399 19-256 (932)
97 KOG3616 Selective LIM binding 98.9 2.6E-05 5.7E-10 84.6 38.3 137 411-569 739-875 (1636)
98 KOG0985 Vesicle coat protein c 98.9 0.00012 2.7E-09 82.6 43.9 325 153-535 981-1305(1666)
99 KOG0985 Vesicle coat protein c 98.9 8.2E-05 1.8E-09 83.9 41.4 298 213-563 967-1268(1666)
100 PRK04841 transcriptional regul 98.9 9.2E-06 2E-10 100.6 38.9 378 195-576 343-763 (903)
101 PRK04841 transcriptional regul 98.8 1.2E-05 2.6E-10 99.7 38.7 339 199-538 380-760 (903)
102 KOG3617 WD40 and TPR repeat-co 98.8 5E-05 1.1E-09 83.8 37.1 230 165-431 737-994 (1416)
103 KOG3616 Selective LIM binding 98.8 1.9E-05 4.2E-10 85.6 33.1 192 341-566 739-930 (1636)
104 KOG1125 TPR repeat-containing 98.8 6E-07 1.3E-11 95.6 20.4 233 447-742 293-527 (579)
105 PF04733 Coatomer_E: Coatomer 98.7 4.5E-07 9.7E-12 93.8 17.9 270 344-705 11-286 (290)
106 PLN02789 farnesyltranstransfer 98.7 7.2E-06 1.6E-10 86.0 26.7 210 163-381 44-267 (320)
107 KOG1914 mRNA cleavage and poly 98.7 0.00025 5.4E-09 75.3 35.7 424 190-672 17-499 (656)
108 KOG1125 TPR repeat-containing 98.7 2.8E-06 6.1E-11 90.6 21.3 252 202-461 294-564 (579)
109 KOG1070 rRNA processing protei 98.6 1.6E-05 3.4E-10 92.7 27.5 224 140-368 1442-1668(1710)
110 PLN02789 farnesyltranstransfer 98.6 3.5E-05 7.6E-10 80.9 28.2 207 203-416 47-267 (320)
111 PF04733 Coatomer_E: Coatomer 98.6 1.6E-06 3.6E-11 89.6 17.7 148 379-537 112-264 (290)
112 KOG1070 rRNA processing protei 98.6 2.3E-05 5E-10 91.4 27.6 199 264-469 1459-1664(1710)
113 KOG4340 Uncharacterized conser 98.6 0.0001 2.3E-09 72.1 27.3 261 155-429 43-335 (459)
114 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 61.9 4.1 34 639-672 1-34 (34)
115 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 61.5 4.5 32 329-360 2-33 (34)
116 KOG1128 Uncharacterized conser 98.5 8.5E-06 1.8E-10 89.2 18.6 218 336-574 400-617 (777)
117 TIGR03302 OM_YfiO outer membra 98.4 3.1E-05 6.7E-10 78.8 21.3 101 156-256 33-143 (235)
118 PRK14720 transcript cleavage f 98.4 6.4E-05 1.4E-09 87.6 24.2 45 645-689 223-267 (906)
119 KOG1128 Uncharacterized conser 98.4 2.1E-05 4.5E-10 86.3 18.6 214 303-537 402-615 (777)
120 PRK15359 type III secretion sy 98.4 5E-06 1.1E-10 76.7 12.0 109 631-744 14-123 (144)
121 PRK14720 transcript cleavage f 98.4 0.00021 4.6E-09 83.3 27.7 172 189-398 27-198 (906)
122 KOG2053 Mitochondrial inherita 98.3 0.011 2.5E-07 67.1 45.8 219 239-469 20-256 (932)
123 TIGR03302 OM_YfiO outer membra 98.3 4.7E-05 1E-09 77.5 20.1 185 333-537 32-231 (235)
124 PRK15179 Vi polysaccharide bio 98.3 0.00014 3E-09 84.2 25.6 164 189-363 82-245 (694)
125 COG5010 TadD Flp pilus assembl 98.3 0.00014 3E-09 70.8 20.8 160 373-536 70-229 (257)
126 PRK10370 formate-dependent nit 98.3 0.00012 2.5E-09 71.6 20.8 119 417-538 52-173 (198)
127 COG4783 Putative Zn-dependent 98.3 0.00054 1.2E-08 72.5 26.6 150 376-547 313-462 (484)
128 PRK10370 formate-dependent nit 98.3 0.00011 2.3E-09 71.9 20.3 119 347-468 52-173 (198)
129 KOG3081 Vesicle coat complex C 98.3 0.00051 1.1E-08 66.8 23.9 118 307-434 116-237 (299)
130 COG5010 TadD Flp pilus assembl 98.3 0.00016 3.5E-09 70.3 20.2 167 190-362 64-230 (257)
131 PRK15179 Vi polysaccharide bio 98.2 0.0001 2.2E-09 85.4 21.9 147 153-306 83-229 (694)
132 smart00463 SMR Small MutS-rela 98.2 3.3E-06 7.1E-11 68.8 7.0 76 753-835 3-78 (80)
133 PRK15359 type III secretion sy 98.2 4.6E-05 9.9E-10 70.3 14.7 98 156-257 24-121 (144)
134 KOG3081 Vesicle coat complex C 98.2 0.00096 2.1E-08 64.9 23.5 105 415-524 148-256 (299)
135 KOG3060 Uncharacterized conser 98.2 0.0024 5.3E-08 61.7 26.0 186 279-468 27-220 (289)
136 TIGR02552 LcrH_SycD type III s 98.1 4.3E-05 9.2E-10 70.1 12.3 109 632-743 5-115 (135)
137 COG4783 Putative Zn-dependent 98.1 0.00079 1.7E-08 71.2 22.6 154 336-512 308-462 (484)
138 PRK15363 pathogenicity island 98.0 4.6E-05 1E-09 69.0 10.4 95 648-743 38-133 (157)
139 TIGR02552 LcrH_SycD type III s 97.9 0.00041 8.8E-09 63.5 15.4 97 439-537 17-113 (135)
140 KOG3060 Uncharacterized conser 97.9 0.0078 1.7E-07 58.3 23.2 189 170-363 26-220 (289)
141 KOG0553 TPR repeat-containing 97.8 0.00013 2.9E-09 72.2 10.7 105 623-730 94-200 (304)
142 KOG0550 Molecular chaperone (D 97.8 0.00048 1E-08 70.9 14.8 289 377-709 57-352 (486)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00064 1.4E-08 72.8 16.0 119 341-465 176-294 (395)
144 TIGR00756 PPR pentatricopeptid 97.8 4.5E-05 9.7E-10 50.7 4.5 33 511-543 2-34 (35)
145 KOG0550 Molecular chaperone (D 97.7 0.0066 1.4E-07 62.8 21.5 169 402-575 166-352 (486)
146 PF09976 TPR_21: Tetratricopep 97.7 0.0019 4.1E-08 59.8 16.0 115 417-534 24-143 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0011 2.5E-08 58.8 13.9 102 157-258 3-106 (119)
148 TIGR00756 PPR pentatricopeptid 97.7 5.9E-05 1.3E-09 50.1 4.1 33 371-403 2-34 (35)
149 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0014 3E-08 70.3 16.3 124 407-536 172-295 (395)
150 PF13812 PPR_3: Pentatricopept 97.7 6.5E-05 1.4E-09 49.6 4.0 33 510-542 2-34 (34)
151 PF09976 TPR_21: Tetratricopep 97.6 0.0013 2.9E-08 60.9 14.1 118 169-289 24-143 (145)
152 PF13812 PPR_3: Pentatricopept 97.5 0.00013 2.7E-09 48.2 4.0 32 230-261 3-34 (34)
153 PRK10866 outer membrane biogen 97.5 0.027 5.8E-07 57.0 22.3 63 161-223 37-99 (243)
154 PLN03088 SGT1, suppressor of 97.5 0.0018 3.9E-08 69.8 14.8 102 163-270 9-110 (356)
155 PLN03088 SGT1, suppressor of 97.5 0.0011 2.5E-08 71.3 13.1 90 653-743 10-100 (356)
156 PF14938 SNAP: Soluble NSF att 97.5 0.011 2.3E-07 61.8 20.0 151 518-709 103-268 (282)
157 cd00189 TPR Tetratricopeptide 97.5 0.00091 2E-08 56.1 9.9 93 648-741 3-96 (100)
158 KOG0553 TPR repeat-containing 97.5 0.0012 2.5E-08 65.8 11.5 104 163-272 88-191 (304)
159 PF10037 MRP-S27: Mitochondria 97.5 0.0025 5.5E-08 68.6 14.7 121 297-417 64-186 (429)
160 KOG2041 WD40 repeat protein [G 97.4 0.21 4.6E-06 55.3 28.7 107 300-429 797-903 (1189)
161 PF10037 MRP-S27: Mitochondria 97.4 0.002 4.3E-08 69.4 13.7 122 401-522 63-186 (429)
162 PF14938 SNAP: Soluble NSF att 97.4 0.024 5.2E-07 59.2 21.3 172 158-361 37-223 (282)
163 cd00189 TPR Tetratricopeptide 97.4 0.0028 6.1E-08 53.0 11.9 21 410-430 40-60 (100)
164 PRK02603 photosystem I assembl 97.4 0.0079 1.7E-07 57.5 16.1 90 158-248 37-126 (172)
165 PF12688 TPR_5: Tetratrico pep 97.4 0.0071 1.5E-07 53.1 14.1 109 162-274 7-117 (120)
166 PF01535 PPR: PPR repeat; Int 97.4 0.00017 3.7E-09 46.3 3.0 29 511-539 2-30 (31)
167 KOG1130 Predicted G-alpha GTPa 97.4 0.0052 1.1E-07 63.3 14.7 122 620-741 205-343 (639)
168 PRK10153 DNA-binding transcrip 97.3 0.017 3.7E-07 65.1 20.5 63 228-293 420-482 (517)
169 PF06239 ECSIT: Evolutionarily 97.3 0.0046 1E-07 58.9 13.2 36 279-314 118-153 (228)
170 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0056 1.2E-07 54.3 13.6 16 450-465 87-102 (119)
171 PF12895 Apc3: Anaphase-promot 97.3 0.0007 1.5E-08 55.9 7.0 82 169-253 2-83 (84)
172 PF08579 RPM2: Mitochondrial r 97.3 0.0032 7E-08 53.0 10.6 39 447-485 33-72 (120)
173 PF01535 PPR: PPR repeat; Int 97.3 0.00022 4.7E-09 45.8 3.1 26 372-397 3-28 (31)
174 PF08579 RPM2: Mitochondrial r 97.3 0.0053 1.1E-07 51.7 11.7 88 512-657 28-116 (120)
175 PF13414 TPR_11: TPR repeat; P 97.3 0.0008 1.7E-08 53.0 6.9 50 691-741 16-66 (69)
176 PF05843 Suf: Suppressor of fo 97.3 0.0054 1.2E-07 63.7 14.9 133 441-576 3-139 (280)
177 PRK15363 pathogenicity island 97.3 0.0046 9.9E-08 56.3 12.2 92 161-256 40-131 (157)
178 PF12895 Apc3: Anaphase-promot 97.3 0.00055 1.2E-08 56.5 6.0 48 690-739 37-84 (84)
179 PF13525 YfiO: Outer membrane 97.3 0.027 5.8E-07 55.5 18.8 67 157-223 6-72 (203)
180 PF06239 ECSIT: Evolutionarily 97.3 0.0059 1.3E-07 58.2 13.0 105 401-524 44-153 (228)
181 KOG1130 Predicted G-alpha GTPa 97.3 0.0062 1.3E-07 62.7 13.9 87 164-250 25-117 (639)
182 PF05843 Suf: Suppressor of fo 97.2 0.005 1.1E-07 63.9 13.7 143 405-552 2-148 (280)
183 PRK02603 photosystem I assembl 97.2 0.021 4.7E-07 54.5 16.4 88 371-459 37-126 (172)
184 PF04840 Vps16_C: Vps16, C-ter 97.2 0.44 9.5E-06 50.1 27.8 106 407-532 180-285 (319)
185 PRK10866 outer membrane biogen 97.1 0.17 3.8E-06 51.1 23.2 56 375-430 181-238 (243)
186 CHL00033 ycf3 photosystem I as 97.1 0.011 2.4E-07 56.3 13.5 95 157-252 36-137 (168)
187 KOG2041 WD40 repeat protein [G 97.1 0.27 5.7E-06 54.6 24.5 130 204-358 745-876 (1189)
188 PF01713 Smr: Smr domain; Int 97.0 0.0014 3.1E-08 53.7 5.9 71 754-834 1-80 (83)
189 PRK10153 DNA-binding transcrip 97.0 0.04 8.6E-07 62.2 18.7 61 475-537 421-481 (517)
190 CHL00033 ycf3 photosystem I as 96.9 0.022 4.8E-07 54.2 14.1 79 371-450 37-117 (168)
191 KOG2796 Uncharacterized conser 96.9 0.51 1.1E-05 46.3 24.7 61 302-362 180-240 (366)
192 KOG2796 Uncharacterized conser 96.9 0.33 7.2E-06 47.5 20.9 143 264-410 178-325 (366)
193 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.82 1.8E-05 48.4 35.4 90 147-241 33-122 (660)
194 PF13432 TPR_16: Tetratricopep 96.8 0.0029 6.3E-08 49.1 5.9 52 690-742 9-60 (65)
195 PRK15331 chaperone protein Sic 96.8 0.0092 2E-07 54.6 9.6 92 650-742 42-134 (165)
196 KOG2280 Vacuolar assembly/sort 96.8 0.51 1.1E-05 53.2 24.6 109 441-568 686-794 (829)
197 COG4235 Cytochrome c biogenesi 96.8 0.02 4.2E-07 57.7 12.5 102 641-743 151-257 (287)
198 PF13432 TPR_16: Tetratricopep 96.8 0.0041 8.9E-08 48.2 6.1 59 651-709 3-62 (65)
199 PF12688 TPR_5: Tetratrico pep 96.7 0.083 1.8E-06 46.4 14.7 53 379-431 11-65 (120)
200 COG4235 Cytochrome c biogenesi 96.7 0.029 6.3E-07 56.5 13.2 100 191-293 154-256 (287)
201 PF14559 TPR_19: Tetratricopep 96.7 0.0038 8.2E-08 48.9 5.7 53 690-743 3-55 (68)
202 PF04840 Vps16_C: Vps16, C-ter 96.7 1.1 2.4E-05 47.2 29.5 109 371-499 179-287 (319)
203 PF13414 TPR_11: TPR repeat; P 96.7 0.0088 1.9E-07 47.0 7.5 63 156-221 3-66 (69)
204 PF14559 TPR_19: Tetratricopep 96.6 0.0089 1.9E-07 46.8 7.4 52 168-222 3-54 (68)
205 PF13525 YfiO: Outer membrane 96.6 0.13 2.9E-06 50.5 17.3 62 196-257 8-71 (203)
206 COG4700 Uncharacterized protei 96.6 0.61 1.3E-05 43.4 19.3 128 401-532 86-216 (251)
207 COG4105 ComL DNA uptake lipopr 96.5 0.71 1.5E-05 45.7 20.9 67 157-223 35-101 (254)
208 KOG1538 Uncharacterized conser 96.4 0.13 2.9E-06 56.3 16.4 20 518-537 826-845 (1081)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.8 3.9E-05 45.9 33.0 114 626-740 413-529 (660)
210 KOG1258 mRNA processing protei 96.3 2.3 5.1E-05 47.1 36.1 429 154-661 43-491 (577)
211 COG4700 Uncharacterized protei 96.3 0.8 1.7E-05 42.6 18.5 125 297-425 87-214 (251)
212 PRK11906 transcriptional regul 96.3 0.092 2E-06 56.4 14.5 120 625-745 273-404 (458)
213 PF13424 TPR_12: Tetratricopep 96.2 0.016 3.5E-07 46.8 6.9 69 646-741 6-74 (78)
214 PRK10803 tol-pal system protei 96.2 0.089 1.9E-06 53.7 13.6 90 485-576 154-249 (263)
215 PRK10803 tol-pal system protei 96.2 0.086 1.9E-06 53.8 13.4 90 167-256 154-245 (263)
216 KOG1585 Protein required for f 96.2 0.74 1.6E-05 44.8 18.4 205 158-392 33-250 (308)
217 PF13431 TPR_17: Tetratricopep 96.2 0.0038 8.3E-08 40.8 2.3 32 701-733 2-33 (34)
218 COG0457 NrfG FOG: TPR repeat [ 96.0 1.8 3.9E-05 42.9 30.0 124 448-573 139-265 (291)
219 KOG1538 Uncharacterized conser 95.8 0.91 2E-05 50.1 19.1 100 368-502 746-845 (1081)
220 COG3898 Uncharacterized membra 95.8 3.1 6.7E-05 43.5 31.8 250 312-576 133-395 (531)
221 PF13424 TPR_12: Tetratricopep 95.6 0.038 8.2E-07 44.6 6.3 65 157-221 6-74 (78)
222 KOG4555 TPR repeat-containing 95.6 0.33 7.1E-06 42.1 11.8 93 163-258 50-145 (175)
223 PF13281 DUF4071: Domain of un 95.4 3.3 7.2E-05 44.1 21.4 31 438-468 304-334 (374)
224 PF13371 TPR_9: Tetratricopept 95.4 0.06 1.3E-06 42.7 6.8 56 165-223 4-59 (73)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.042 9.1E-07 58.9 7.3 100 641-744 70-176 (453)
226 PF13371 TPR_9: Tetratricopept 95.3 0.11 2.4E-06 41.1 8.1 53 414-467 5-57 (73)
227 PF03704 BTAD: Bacterial trans 95.2 0.12 2.5E-06 47.9 9.2 72 475-547 63-139 (146)
228 PRK15331 chaperone protein Sic 95.2 0.19 4.1E-06 46.2 10.0 91 162-256 43-133 (165)
229 COG0457 NrfG FOG: TPR repeat [ 95.2 3.7 8E-05 40.6 30.8 223 313-538 37-265 (291)
230 PF03704 BTAD: Bacterial trans 95.1 0.48 1E-05 43.7 13.1 70 230-301 64-138 (146)
231 PF13281 DUF4071: Domain of un 95.1 3.1 6.6E-05 44.4 20.0 32 507-538 303-334 (374)
232 COG3898 Uncharacterized membra 95.1 5.3 0.00012 41.9 32.3 295 230-542 84-396 (531)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.25 5.4E-06 53.1 11.9 70 153-222 72-141 (453)
234 COG3118 Thioredoxin domain-con 95.1 1.8 3.9E-05 43.7 17.0 123 162-291 140-263 (304)
235 KOG2280 Vacuolar assembly/sort 95.0 8.3 0.00018 44.0 29.5 92 473-574 683-774 (829)
236 PF04184 ST7: ST7 protein; In 95.0 1.3 2.7E-05 48.1 16.8 102 476-578 261-380 (539)
237 KOG3941 Intermediate in Toll s 95.0 0.29 6.2E-06 48.4 11.1 105 506-660 64-173 (406)
238 KOG1550 Extracellular protein 95.0 9.2 0.0002 44.1 27.5 129 406-540 290-428 (552)
239 PF13512 TPR_18: Tetratricopep 94.9 0.44 9.5E-06 42.8 11.3 84 156-239 10-93 (142)
240 KOG2114 Vacuolar assembly/sort 94.9 10 0.00022 44.0 24.4 185 156-362 334-518 (933)
241 KOG1920 IkappaB kinase complex 94.8 9.2 0.0002 46.1 24.4 153 348-535 894-1052(1265)
242 COG4105 ComL DNA uptake lipopr 94.8 4.7 0.0001 40.1 20.8 80 194-274 36-117 (254)
243 PF07079 DUF1347: Protein of u 94.8 6.9 0.00015 42.0 46.8 141 166-310 16-178 (549)
244 KOG0543 FKBP-type peptidyl-pro 94.8 0.38 8.2E-06 50.6 12.2 139 306-467 215-354 (397)
245 PRK11906 transcriptional regul 94.6 2.4 5.2E-05 46.0 17.9 160 157-323 252-431 (458)
246 KOG3941 Intermediate in Toll s 94.5 0.3 6.5E-06 48.3 9.9 35 242-276 86-120 (406)
247 PF12921 ATP13: Mitochondrial 94.4 0.6 1.3E-05 41.5 11.0 102 438-559 1-103 (126)
248 PF04053 Coatomer_WDAD: Coatom 94.4 0.94 2E-05 50.0 14.9 76 336-429 297-372 (443)
249 smart00299 CLH Clathrin heavy 94.4 1.9 4.2E-05 39.3 15.0 42 198-240 12-53 (140)
250 KOG0543 FKBP-type peptidyl-pro 94.4 0.7 1.5E-05 48.7 12.8 138 340-501 214-353 (397)
251 KOG1920 IkappaB kinase complex 94.1 18 0.00038 43.8 25.6 108 442-569 911-1024(1265)
252 PF10300 DUF3808: Protein of u 94.0 2.4 5.3E-05 47.6 17.5 178 175-362 176-375 (468)
253 PF09205 DUF1955: Domain of un 94.0 3.4 7.3E-05 36.3 13.9 134 312-470 15-151 (161)
254 PF12921 ATP13: Mitochondrial 94.0 0.81 1.8E-05 40.7 10.9 48 365-412 48-96 (126)
255 PF10300 DUF3808: Protein of u 94.0 3.1 6.7E-05 46.7 18.2 179 212-397 176-375 (468)
256 KOG1585 Protein required for f 94.0 6.8 0.00015 38.4 20.3 93 648-740 153-254 (308)
257 PF04053 Coatomer_WDAD: Coatom 93.9 2.1 4.5E-05 47.4 16.4 133 299-464 295-427 (443)
258 PF08631 SPO22: Meiosis protei 93.9 9.2 0.0002 39.7 26.7 125 167-293 4-150 (278)
259 COG1747 Uncharacterized N-term 93.8 12 0.00026 40.8 23.2 182 473-687 65-247 (711)
260 KOG1923 Rac1 GTPase effector F 93.8 0.24 5.1E-06 55.7 8.6 12 648-659 719-730 (830)
261 PF04184 ST7: ST7 protein; In 93.7 3.4 7.4E-05 44.9 16.5 162 161-339 173-336 (539)
262 PF06552 TOM20_plant: Plant sp 93.5 0.31 6.7E-06 45.3 7.4 78 661-739 7-99 (186)
263 COG3118 Thioredoxin domain-con 93.4 10 0.00022 38.6 18.6 120 309-431 144-263 (304)
264 smart00299 CLH Clathrin heavy 93.4 4.8 0.0001 36.7 15.6 41 234-275 13-53 (140)
265 COG1729 Uncharacterized protei 93.4 0.59 1.3E-05 46.7 9.8 92 166-257 151-244 (262)
266 KOG1258 mRNA processing protei 93.3 16 0.00036 40.8 38.7 371 162-558 85-489 (577)
267 KOG1941 Acetylcholine receptor 93.3 3.7 7.9E-05 42.5 15.2 130 444-573 127-275 (518)
268 KOG4555 TPR repeat-containing 93.3 2.3 5.1E-05 37.1 11.8 94 200-295 50-146 (175)
269 KOG1550 Extracellular protein 93.3 20 0.00042 41.5 27.0 243 244-503 228-504 (552)
270 PF13170 DUF4003: Protein of u 93.1 13 0.00027 38.9 20.4 25 491-515 199-223 (297)
271 PF08631 SPO22: Meiosis protei 93.1 12 0.00027 38.7 26.2 102 406-509 86-192 (278)
272 COG1729 Uncharacterized protei 93.1 1.2 2.5E-05 44.7 11.3 98 194-293 143-244 (262)
273 PF13170 DUF4003: Protein of u 92.8 8.3 0.00018 40.2 17.8 86 244-331 78-175 (297)
274 PF07079 DUF1347: Protein of u 92.8 16 0.00035 39.4 40.9 141 201-347 14-180 (549)
275 PF13428 TPR_14: Tetratricopep 92.5 0.31 6.6E-06 34.1 4.7 27 159-185 4-30 (44)
276 PF13428 TPR_14: Tetratricopep 92.2 0.39 8.5E-06 33.5 5.0 36 647-682 3-38 (44)
277 KOG2114 Vacuolar assembly/sort 92.0 29 0.00063 40.4 25.3 178 196-395 337-516 (933)
278 KOG2066 Vacuolar assembly/sort 91.9 29 0.00062 40.2 28.6 106 162-275 362-467 (846)
279 PF09205 DUF1955: Domain of un 91.9 7.5 0.00016 34.3 13.0 62 302-364 89-150 (161)
280 KOG2610 Uncharacterized conser 91.7 11 0.00024 38.7 16.1 116 240-359 115-234 (491)
281 PF07035 Mic1: Colon cancer-as 91.6 12 0.00026 35.0 15.6 100 249-360 15-115 (167)
282 COG4649 Uncharacterized protei 91.4 11 0.00024 34.9 14.3 124 203-327 68-195 (221)
283 KOG2396 HAT (Half-A-TPR) repea 91.3 26 0.00056 38.4 36.8 67 190-257 102-169 (568)
284 KOG4234 TPR repeat-containing 91.3 4.2 9.1E-05 38.5 11.8 88 653-741 103-196 (271)
285 COG4649 Uncharacterized protei 91.0 13 0.00029 34.5 14.4 133 229-363 60-196 (221)
286 KOG2066 Vacuolar assembly/sort 90.9 36 0.00078 39.4 28.3 102 200-311 363-467 (846)
287 COG4785 NlpI Lipoprotein NlpI, 90.7 17 0.00036 35.2 18.1 83 170-256 79-161 (297)
288 PF06552 TOM20_plant: Plant sp 90.5 1.7 3.7E-05 40.6 8.6 65 625-718 50-119 (186)
289 PF00515 TPR_1: Tetratricopept 90.5 0.6 1.3E-05 30.3 4.3 32 646-677 2-33 (34)
290 COG3629 DnrI DNA-binding trans 90.1 3.3 7.1E-05 42.2 11.0 73 407-480 156-233 (280)
291 KOG2063 Vacuolar assembly/sort 89.9 52 0.0011 39.5 22.5 26 372-397 507-532 (877)
292 COG3629 DnrI DNA-binding trans 89.9 3.3 7.2E-05 42.2 10.9 79 475-554 154-237 (280)
293 PRK11619 lytic murein transgly 89.7 48 0.001 38.9 38.1 388 139-564 82-496 (644)
294 PF04910 Tcf25: Transcriptiona 89.6 33 0.00073 37.0 21.1 44 138-184 25-68 (360)
295 KOG0890 Protein kinase of the 89.5 85 0.0018 41.5 26.9 153 162-323 1389-1542(2382)
296 KOG4648 Uncharacterized conser 89.4 0.86 1.9E-05 46.4 6.2 92 484-577 107-198 (536)
297 KOG1941 Acetylcholine receptor 89.4 30 0.00065 36.2 19.9 158 167-325 17-188 (518)
298 KOG1586 Protein required for f 89.0 24 0.00053 34.6 20.1 54 625-678 169-228 (288)
299 COG4785 NlpI Lipoprotein NlpI, 88.8 24 0.00051 34.2 19.0 180 207-398 79-266 (297)
300 PF07035 Mic1: Colon cancer-as 88.5 22 0.00047 33.3 14.8 102 284-395 14-115 (167)
301 PF13176 TPR_7: Tetratricopept 88.4 0.78 1.7E-05 30.3 3.7 26 715-740 1-26 (36)
302 KOG1464 COP9 signalosome, subu 88.3 29 0.00063 34.6 17.4 183 374-558 70-286 (440)
303 KOG4570 Uncharacterized conser 88.1 5 0.00011 40.8 10.4 104 222-328 58-164 (418)
304 PF07719 TPR_2: Tetratricopept 88.1 1 2.2E-05 29.0 4.1 31 647-677 3-33 (34)
305 PF13512 TPR_18: Tetratricopep 87.9 10 0.00022 34.3 11.3 78 198-275 15-94 (142)
306 PRK09687 putative lyase; Provi 87.9 36 0.00079 35.2 27.6 234 297-555 35-278 (280)
307 PF10602 RPN7: 26S proteasome 87.5 5.6 0.00012 37.9 10.3 64 158-221 38-101 (177)
308 PF07719 TPR_2: Tetratricopept 87.5 1 2.3E-05 29.0 3.8 29 714-742 2-30 (34)
309 PF13176 TPR_7: Tetratricopept 87.1 1.1 2.3E-05 29.6 3.7 26 647-672 1-26 (36)
310 COG2976 Uncharacterized protei 86.9 4.8 0.0001 38.2 9.0 94 162-257 95-188 (207)
311 PF13431 TPR_17: Tetratricopep 86.9 0.73 1.6E-05 30.0 2.7 24 190-213 10-33 (34)
312 PF09613 HrpB1_HrpK: Bacterial 86.6 27 0.00058 32.3 13.6 93 202-298 19-111 (160)
313 KOG4234 TPR repeat-containing 86.4 16 0.00034 34.8 11.9 89 447-537 103-196 (271)
314 PF10602 RPN7: 26S proteasome 86.4 9.7 0.00021 36.3 11.3 59 372-430 39-99 (177)
315 KOG0307 Vesicle coat complex C 86.3 67 0.0014 38.8 19.7 18 203-220 1007-1024(1049)
316 PF09613 HrpB1_HrpK: Bacterial 86.3 7.8 0.00017 35.7 9.9 75 653-728 18-93 (160)
317 KOG1586 Protein required for f 86.1 36 0.00079 33.4 19.2 85 625-709 129-226 (288)
318 KOG2610 Uncharacterized conser 86.1 45 0.00098 34.5 24.0 150 347-500 116-273 (491)
319 COG5159 RPN6 26S proteasome re 86.1 41 0.00088 34.0 20.6 58 479-536 130-192 (421)
320 KOG4570 Uncharacterized conser 85.7 11 0.00024 38.4 11.3 101 434-538 59-164 (418)
321 PF04097 Nic96: Nup93/Nic96; 85.2 66 0.0014 37.7 19.5 65 229-295 113-183 (613)
322 PF00515 TPR_1: Tetratricopept 84.3 1.8 3.9E-05 27.9 3.7 27 511-537 3-29 (34)
323 KOG0276 Vesicle coat complex C 84.3 17 0.00037 40.5 12.8 100 239-360 648-747 (794)
324 PRK09687 putative lyase; Provi 84.0 57 0.0012 33.8 27.7 121 298-432 141-262 (280)
325 COG3947 Response regulator con 83.9 53 0.0012 33.4 16.1 58 478-536 283-340 (361)
326 COG3947 Response regulator con 83.8 41 0.00088 34.2 14.1 53 412-465 287-339 (361)
327 KOG0917 Uncharacterized conser 83.3 9.5 0.00021 37.6 9.4 20 61-80 249-268 (338)
328 KOG2391 Vacuolar sorting prote 83.2 11 0.00023 38.8 10.1 50 226-276 297-346 (365)
329 PF10345 Cohesin_load: Cohesin 83.2 1E+02 0.0022 36.2 40.1 404 161-567 64-600 (608)
330 KOG4849 mRNA cleavage factor I 83.0 45 0.00098 34.2 14.3 17 168-184 385-401 (498)
331 PF13374 TPR_10: Tetratricopep 82.8 2.1 4.5E-05 29.0 3.8 28 714-741 3-30 (42)
332 COG5159 RPN6 26S proteasome re 82.6 58 0.0013 32.9 16.0 21 408-428 129-149 (421)
333 PF13181 TPR_8: Tetratricopept 82.1 2.2 4.9E-05 27.4 3.5 30 647-676 3-32 (34)
334 PF02259 FAT: FAT domain; Int 81.7 80 0.0017 33.9 24.8 54 270-328 5-58 (352)
335 KOG2297 Predicted translation 81.3 68 0.0015 32.8 17.9 21 439-459 321-341 (412)
336 PF13181 TPR_8: Tetratricopept 80.4 3.2 7E-05 26.6 3.8 29 714-742 2-30 (34)
337 KOG4648 Uncharacterized conser 80.4 7.5 0.00016 39.9 7.9 91 162-256 103-193 (536)
338 TIGR02561 HrpB1_HrpK type III 79.3 50 0.0011 30.1 12.1 52 205-258 22-74 (153)
339 KOG0276 Vesicle coat complex C 79.0 27 0.00059 39.0 12.0 150 346-535 598-747 (794)
340 PF02259 FAT: FAT domain; Int 77.9 1E+02 0.0022 33.0 26.2 65 473-537 145-212 (352)
341 PF10345 Cohesin_load: Cohesin 77.8 1.5E+02 0.0033 34.8 45.0 186 174-361 39-252 (608)
342 PF13374 TPR_10: Tetratricopep 77.5 3.6 7.8E-05 27.8 3.6 28 646-673 3-30 (42)
343 TIGR02561 HrpB1_HrpK type III 77.4 23 0.0005 32.2 9.2 71 657-728 22-93 (153)
344 PF04097 Nic96: Nup93/Nic96; 77.3 1.5E+02 0.0034 34.7 21.4 42 199-241 117-158 (613)
345 KOG2471 TPR repeat-containing 75.7 75 0.0016 34.8 13.9 78 477-556 286-381 (696)
346 COG2976 Uncharacterized protei 75.2 80 0.0017 30.3 14.7 90 307-398 97-188 (207)
347 COG0790 FOG: TPR repeat, SEL1 75.0 1.1E+02 0.0024 31.8 23.1 151 168-329 53-221 (292)
348 COG1747 Uncharacterized N-term 74.6 1.4E+02 0.0031 33.0 25.7 95 228-328 66-160 (711)
349 cd00923 Cyt_c_Oxidase_Va Cytoc 74.1 24 0.00052 29.3 7.7 64 489-553 22-85 (103)
350 PRK15180 Vi polysaccharide bio 74.1 86 0.0019 34.1 13.8 120 275-399 301-421 (831)
351 PF07721 TPR_4: Tetratricopept 73.2 5.1 0.00011 24.1 2.9 23 715-737 3-25 (26)
352 PF11207 DUF2989: Protein of u 73.1 31 0.00067 33.2 9.5 77 310-388 118-197 (203)
353 PF11207 DUF2989: Protein of u 72.9 26 0.00056 33.8 8.9 72 491-563 123-197 (203)
354 KOG2062 26S proteasome regulat 71.8 2E+02 0.0044 33.5 31.9 175 380-561 368-554 (929)
355 KOG2471 TPR repeat-containing 71.6 1.1E+02 0.0025 33.5 14.0 107 413-521 249-381 (696)
356 COG0790 FOG: TPR repeat, SEL1 71.2 1.3E+02 0.0029 31.2 25.4 123 419-548 128-276 (292)
357 KOG0307 Vesicle coat complex C 70.1 2.7E+02 0.0058 34.1 18.7 41 215-255 984-1024(1049)
358 PF10579 Rapsyn_N: Rapsyn N-te 70.0 11 0.00024 29.9 4.8 48 168-215 18-65 (80)
359 PF07575 Nucleopor_Nup85: Nup8 69.8 1.4E+02 0.0031 34.7 16.2 29 625-653 510-538 (566)
360 PF13929 mRNA_stabil: mRNA sta 69.1 1.4E+02 0.0031 30.6 16.8 118 241-358 141-262 (292)
361 PF07163 Pex26: Pex26 protein; 68.7 37 0.0008 34.3 9.2 88 162-251 89-181 (309)
362 PF02284 COX5A: Cytochrome c o 68.7 22 0.00048 29.9 6.4 61 492-553 28-88 (108)
363 PRK04946 hypothetical protein; 68.3 13 0.00028 35.3 5.9 55 752-819 96-150 (181)
364 COG2840 Uncharacterized protei 67.4 14 0.00029 35.1 5.7 58 751-817 96-154 (184)
365 PF07575 Nucleopor_Nup85: Nup8 67.3 1.1E+02 0.0025 35.4 14.7 34 521-554 507-540 (566)
366 PF04190 DUF410: Protein of un 67.0 1.5E+02 0.0034 30.2 15.5 82 437-537 88-169 (260)
367 cd00923 Cyt_c_Oxidase_Va Cytoc 66.7 45 0.00098 27.8 7.7 44 423-466 26-69 (103)
368 COG4455 ImpE Protein of avirul 66.7 25 0.00055 34.0 7.4 72 163-237 8-81 (273)
369 COG2909 MalT ATP-dependent tra 66.3 2.9E+02 0.0063 33.1 27.6 50 347-396 471-524 (894)
370 KOG3824 Huntingtin interacting 66.2 58 0.0013 33.3 10.1 180 657-851 128-356 (472)
371 PF08424 NRDE-2: NRDE-2, neces 65.4 1.9E+02 0.0041 30.7 19.8 136 172-330 47-185 (321)
372 PF02284 COX5A: Cytochrome c o 65.3 72 0.0016 26.9 8.7 45 246-291 28-72 (108)
373 KOG2297 Predicted translation 63.0 1.9E+02 0.0041 29.8 17.0 18 546-563 323-340 (412)
374 PF13174 TPR_6: Tetratricopept 62.7 10 0.00022 23.9 3.0 24 514-537 5-28 (33)
375 PF00637 Clathrin: Region in C 62.5 1.6 3.5E-05 40.0 -1.3 47 311-357 19-65 (143)
376 PF13174 TPR_6: Tetratricopept 62.3 11 0.00023 23.8 3.0 25 651-675 6-30 (33)
377 PF00637 Clathrin: Region in C 62.1 1.9 4.1E-05 39.5 -0.9 50 344-393 17-66 (143)
378 COG4455 ImpE Protein of avirul 61.7 51 0.0011 32.1 8.3 76 477-553 4-81 (273)
379 KOG4642 Chaperone-dependent E3 61.2 1.3E+02 0.0029 29.8 11.1 83 167-254 21-104 (284)
380 KOG0376 Serine-threonine phosp 60.7 22 0.00047 38.8 6.5 105 519-659 14-119 (476)
381 PRK15180 Vi polysaccharide bio 60.5 2.6E+02 0.0057 30.7 30.7 135 156-296 289-423 (831)
382 KOG4642 Chaperone-dependent E3 60.3 1.4E+02 0.0031 29.7 11.1 56 519-576 20-76 (284)
383 KOG0376 Serine-threonine phosp 59.9 22 0.00047 38.8 6.4 105 163-273 11-115 (476)
384 PF14561 TPR_20: Tetratricopep 59.7 91 0.002 25.8 8.8 67 143-210 9-75 (90)
385 smart00028 TPR Tetratricopepti 59.0 13 0.00029 22.4 3.1 28 714-741 2-29 (34)
386 TIGR03504 FimV_Cterm FimV C-te 58.4 22 0.00047 24.8 4.0 23 515-537 5-27 (44)
387 PHA02875 ankyrin repeat protei 58.4 1.8E+02 0.0038 32.1 13.9 10 629-638 299-308 (413)
388 smart00028 TPR Tetratricopepti 57.6 18 0.00039 21.7 3.6 29 648-676 4-32 (34)
389 PF09986 DUF2225: Uncharacteri 56.5 93 0.002 30.7 9.8 92 166-257 87-194 (214)
390 PRK11619 lytic murein transgly 56.5 4E+02 0.0086 31.5 34.9 377 142-547 115-514 (644)
391 KOG4279 Serine/threonine prote 56.0 2.1E+02 0.0047 33.2 13.1 46 422-467 181-229 (1226)
392 TIGR02508 type_III_yscG type I 55.1 1.3E+02 0.0028 25.4 8.5 15 449-463 49-63 (115)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 55.0 89 0.0019 27.8 8.6 43 211-253 81-124 (126)
394 TIGR03504 FimV_Cterm FimV C-te 54.8 22 0.00048 24.8 3.6 26 304-329 4-29 (44)
395 KOG1308 Hsp70-interacting prot 52.7 15 0.00033 38.0 3.7 86 658-744 127-213 (377)
396 KOG3364 Membrane protein invol 52.4 1.7E+02 0.0037 26.3 9.4 20 690-709 83-102 (149)
397 PF12862 Apc5: Anaphase-promot 52.3 1.2E+02 0.0027 25.1 8.7 28 716-743 44-71 (94)
398 PF14853 Fis1_TPR_C: Fis1 C-te 51.9 28 0.0006 25.5 3.9 31 651-681 7-37 (53)
399 COG4941 Predicted RNA polymera 51.4 2.6E+02 0.0057 29.3 11.9 118 624-742 270-394 (415)
400 PF13762 MNE1: Mitochondrial s 51.4 1.9E+02 0.0042 26.3 10.5 79 478-557 43-128 (145)
401 KOG4507 Uncharacterized conser 51.2 85 0.0019 35.2 9.0 58 198-256 647-704 (886)
402 TIGR02508 type_III_yscG type I 50.8 1.5E+02 0.0033 25.0 9.2 50 344-399 49-98 (115)
403 COG5187 RPN7 26S proteasome re 50.3 3E+02 0.0065 28.2 14.0 171 316-488 55-241 (412)
404 PHA02875 ankyrin repeat protei 50.3 2.7E+02 0.0058 30.7 13.7 47 308-358 108-156 (413)
405 KOG0890 Protein kinase of the 49.9 8.3E+02 0.018 33.2 33.5 148 375-532 1389-1541(2382)
406 COG2909 MalT ATP-dependent tra 48.8 5.6E+02 0.012 30.9 31.0 87 240-327 427-525 (894)
407 KOG0403 Neoplastic transformat 47.3 4.2E+02 0.009 29.0 18.2 61 478-539 513-573 (645)
408 PF03276 Gag_spuma: Spumavirus 47.0 1E+02 0.0023 34.2 8.9 12 155-166 302-313 (582)
409 KOG1464 COP9 signalosome, subu 46.9 3.2E+02 0.007 27.6 28.0 193 383-576 41-263 (440)
410 KOG0403 Neoplastic transformat 46.1 4.4E+02 0.0095 28.9 27.8 147 337-500 217-371 (645)
411 PF10366 Vps39_1: Vacuolar sor 45.7 1E+02 0.0022 26.6 7.1 26 372-397 42-67 (108)
412 KOG2034 Vacuolar sorting prote 45.2 6.2E+02 0.014 30.4 30.3 77 160-251 362-438 (911)
413 PF00244 14-3-3: 14-3-3 protei 44.9 3.4E+02 0.0073 27.3 15.1 21 724-744 180-200 (236)
414 PF07163 Pex26: Pex26 protein; 44.6 2.5E+02 0.0054 28.7 10.4 87 411-497 90-181 (309)
415 KOG0687 26S proteasome regulat 44.2 4E+02 0.0087 27.9 13.5 23 372-394 107-129 (393)
416 PF08424 NRDE-2: NRDE-2, neces 44.0 4.2E+02 0.0091 28.1 19.3 78 421-500 48-128 (321)
417 PF14669 Asp_Glu_race_2: Putat 43.9 3E+02 0.0065 26.4 13.6 55 479-533 137-205 (233)
418 cd08819 CARD_MDA5_2 Caspase ac 43.5 1.3E+02 0.0029 24.6 6.8 14 348-361 50-63 (88)
419 PRK13342 recombination factor 43.1 5E+02 0.011 28.7 19.4 37 487-523 243-279 (413)
420 KOG4507 Uncharacterized conser 42.7 1.6E+02 0.0034 33.3 9.4 151 296-450 568-721 (886)
421 smart00386 HAT HAT (Half-A-TPR 42.5 48 0.001 20.4 3.8 28 693-721 2-29 (33)
422 PF12862 Apc5: Anaphase-promot 42.0 1E+02 0.0023 25.6 6.6 55 167-221 9-69 (94)
423 PF11848 DUF3368: Domain of un 41.8 88 0.0019 22.3 5.2 33 520-552 13-45 (48)
424 KOG1308 Hsp70-interacting prot 41.7 20 0.00043 37.3 2.5 94 166-263 124-217 (377)
425 KOG0687 26S proteasome regulat 41.2 4.5E+02 0.0097 27.6 14.3 68 335-402 105-177 (393)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 41.1 73 0.0016 28.3 5.8 45 696-740 81-126 (126)
427 PF10579 Rapsyn_N: Rapsyn N-te 40.9 82 0.0018 25.2 5.2 48 521-568 18-67 (80)
428 PF12968 DUF3856: Domain of Un 39.9 2.6E+02 0.0056 24.5 8.7 29 644-672 54-82 (144)
429 KOG4077 Cytochrome c oxidase, 39.6 1.7E+02 0.0037 25.9 7.3 60 492-552 67-126 (149)
430 KOG3364 Membrane protein invol 39.4 1E+02 0.0022 27.6 6.1 55 625-680 50-106 (149)
431 PF00244 14-3-3: 14-3-3 protei 38.9 4.2E+02 0.0091 26.6 16.0 32 641-672 160-196 (236)
432 PF13929 mRNA_stabil: mRNA sta 38.6 4.6E+02 0.01 27.1 19.6 114 350-463 144-262 (292)
433 KOG0686 COP9 signalosome, subu 38.0 5.6E+02 0.012 27.8 15.0 180 194-377 151-352 (466)
434 PF14561 TPR_20: Tetratricopep 37.6 2.3E+02 0.0051 23.3 8.8 54 190-243 19-73 (90)
435 cd08819 CARD_MDA5_2 Caspase ac 37.5 2E+02 0.0044 23.6 7.0 66 283-354 21-86 (88)
436 PF14689 SPOB_a: Sensor_kinase 37.4 83 0.0018 23.8 4.8 25 512-536 26-50 (62)
437 PF12968 DUF3856: Domain of Un 37.1 1.8E+02 0.0038 25.5 6.9 59 160-218 59-125 (144)
438 KOG4279 Serine/threonine prote 37.1 7.6E+02 0.017 29.1 13.8 117 214-336 184-322 (1226)
439 PF15297 CKAP2_C: Cytoskeleton 37.0 3E+02 0.0065 29.1 10.1 65 489-555 118-186 (353)
440 PF10366 Vps39_1: Vacuolar sor 36.9 1.5E+02 0.0032 25.6 6.8 26 407-432 42-67 (108)
441 KOG4814 Uncharacterized conser 36.9 1.9E+02 0.0041 33.1 9.0 19 722-740 818-836 (872)
442 PF03276 Gag_spuma: Spumavirus 36.2 1.7E+02 0.0037 32.6 8.5 8 170-177 328-335 (582)
443 KOG0905 Phosphoinositide 3-kin 36.2 2.2E+02 0.0048 35.1 9.9 23 760-782 1330-1352(1639)
444 KOG2236 Uncharacterized conser 36.1 68 0.0015 34.7 5.4 54 5-62 419-473 (483)
445 PF14853 Fis1_TPR_C: Fis1 C-te 35.9 1.1E+02 0.0024 22.3 5.0 33 516-550 8-40 (53)
446 PRK13800 putative oxidoreducta 35.8 9.5E+02 0.021 29.8 30.0 248 296-572 632-880 (897)
447 PF09986 DUF2225: Uncharacteri 35.5 1.9E+02 0.0041 28.6 8.2 54 172-225 141-197 (214)
448 PF11846 DUF3366: Domain of un 35.4 1.1E+02 0.0023 29.6 6.6 36 540-575 140-175 (193)
449 PF09670 Cas_Cas02710: CRISPR- 35.3 5E+02 0.011 28.3 12.2 52 309-361 141-196 (379)
450 COG5108 RPO41 Mitochondrial DN 35.1 2.8E+02 0.0061 31.9 10.0 73 444-519 33-113 (1117)
451 PRK13342 recombination factor 35.0 6.6E+02 0.014 27.7 19.9 33 382-414 243-275 (413)
452 cd00280 TRFH Telomeric Repeat 34.9 4.1E+02 0.0089 25.4 10.6 21 236-256 119-139 (200)
453 PF11846 DUF3366: Domain of un 34.8 1.3E+02 0.0029 29.0 7.1 48 627-676 128-175 (193)
454 PF11663 Toxin_YhaV: Toxin wit 34.7 38 0.00083 30.1 2.8 33 203-237 105-137 (140)
455 KOG2034 Vacuolar sorting prote 34.6 9E+02 0.019 29.2 27.1 52 199-256 364-417 (911)
456 PF14689 SPOB_a: Sensor_kinase 34.6 95 0.0021 23.5 4.7 7 417-423 36-42 (62)
457 PF09670 Cas_Cas02710: CRISPR- 34.4 3.5E+02 0.0076 29.5 10.9 127 446-573 138-270 (379)
458 PF04762 IKI3: IKI3 family; I 34.2 1E+03 0.022 29.7 17.2 199 233-465 699-927 (928)
459 KOG3024 Uncharacterized conser 33.4 5.5E+02 0.012 26.4 12.2 125 544-739 26-153 (312)
460 KOG3895 Synaptic vesicle prote 32.6 1.7E+02 0.0037 30.5 7.3 69 5-79 418-486 (488)
461 KOG2391 Vacuolar sorting prote 32.5 6.1E+02 0.013 26.6 14.4 221 52-289 138-358 (365)
462 KOG3807 Predicted membrane pro 32.3 6.1E+02 0.013 26.5 13.7 169 162-347 190-359 (556)
463 PF11848 DUF3368: Domain of un 32.2 1.6E+02 0.0035 20.9 5.3 38 410-447 8-45 (48)
464 PRK10941 hypothetical protein; 32.0 5.4E+02 0.012 26.5 11.1 86 404-490 181-267 (269)
465 PF14967 FAM70: FAM70 protein 31.7 5.5E+02 0.012 26.4 10.4 97 1-98 231-327 (327)
466 KOG2236 Uncharacterized conser 31.0 1.8E+02 0.0038 31.7 7.5 77 6-82 404-482 (483)
467 PF13934 ELYS: Nuclear pore co 30.8 3.4E+02 0.0075 27.0 9.3 105 138-250 90-198 (226)
468 KOG3636 Uncharacterized conser 30.8 7.4E+02 0.016 27.1 13.3 200 284-485 39-271 (669)
469 PF01690 PLRV_ORF5: Potato lea 30.6 43 0.00094 36.5 3.0 27 52-78 4-30 (465)
470 PTZ00449 104 kDa microneme/rho 30.5 5.5E+02 0.012 28.6 11.0 95 2-96 575-671 (943)
471 KOG0905 Phosphoinositide 3-kin 30.2 5E+02 0.011 32.3 11.5 121 2-122 95-221 (1639)
472 PRK10564 maltose regulon perip 29.4 96 0.0021 32.0 5.1 42 512-553 260-301 (303)
473 KOG4077 Cytochrome c oxidase, 29.1 3.2E+02 0.007 24.2 7.3 60 282-342 67-126 (149)
474 KOG1925 Rac1 GTPase effector F 28.8 92 0.002 33.9 4.9 72 45-116 222-295 (817)
475 KOG0128 RNA-binding protein SA 28.6 1.1E+03 0.024 28.3 37.7 420 136-571 93-561 (881)
476 PF09477 Type_III_YscG: Bacter 28.6 3.8E+02 0.0083 23.0 8.1 77 421-504 23-99 (116)
477 PF11663 Toxin_YhaV: Toxin wit 28.6 60 0.0013 28.9 3.0 34 521-556 107-140 (140)
478 KOG3824 Huntingtin interacting 28.5 1.1E+02 0.0023 31.5 5.1 60 680-740 118-177 (472)
479 KOG2063 Vacuolar assembly/sort 28.2 1.2E+03 0.026 28.6 25.9 385 163-567 314-776 (877)
480 PF15297 CKAP2_C: Cytoskeleton 28.1 4.2E+02 0.0092 28.1 9.5 87 157-243 104-190 (353)
481 TIGR01228 hutU urocanate hydra 27.8 1.8E+02 0.0039 32.1 7.0 176 314-504 209-423 (545)
482 COG5178 PRP8 U5 snRNP spliceos 27.7 48 0.001 39.9 2.9 26 53-78 5-30 (2365)
483 PF09477 Type_III_YscG: Bacter 27.6 4E+02 0.0086 22.9 9.3 81 169-258 19-99 (116)
484 KOG2396 HAT (Half-A-TPR) repea 27.2 9.3E+02 0.02 27.1 39.5 461 209-741 87-558 (568)
485 cd00280 TRFH Telomeric Repeat 27.1 3.9E+02 0.0084 25.6 8.0 67 385-454 85-158 (200)
486 TIGR02710 CRISPR-associated pr 26.8 6.8E+02 0.015 27.2 11.1 128 339-467 135-274 (380)
487 PF13762 MNE1: Mitochondrial s 26.7 5E+02 0.011 23.8 10.1 100 177-276 23-128 (145)
488 KOG0132 RNA polymerase II C-te 26.4 6.1E+02 0.013 29.9 10.9 93 3-95 573-671 (894)
489 PF07720 TPR_3: Tetratricopept 26.3 1.5E+02 0.0032 19.6 3.9 31 648-678 4-36 (36)
490 PRK14948 DNA polymerase III su 25.4 1.9E+02 0.004 34.0 7.3 69 2-70 526-594 (620)
491 KOG0162 Myosin class I heavy c 25.3 3.8E+02 0.0082 31.2 9.0 90 1-90 961-1052(1106)
492 COG5108 RPO41 Mitochondrial DN 25.1 5.1E+02 0.011 29.9 9.9 90 409-502 33-131 (1117)
493 KOG2659 LisH motif-containing 25.1 5.4E+02 0.012 25.5 9.0 102 470-571 22-130 (228)
494 PRK14956 DNA polymerase III su 24.8 1E+03 0.023 26.8 12.5 106 421-550 184-289 (484)
495 PRK10564 maltose regulon perip 24.7 1.6E+02 0.0034 30.5 5.6 48 190-237 254-301 (303)
496 PRK10941 hypothetical protein; 24.7 7.8E+02 0.017 25.3 11.1 84 193-277 181-265 (269)
497 KOG0545 Aryl-hydrocarbon recep 24.5 7.4E+02 0.016 25.0 10.1 96 163-259 185-295 (329)
498 KOG0686 COP9 signalosome, subu 24.4 9.5E+02 0.021 26.2 15.7 179 159-342 153-352 (466)
499 KOG0545 Aryl-hydrocarbon recep 24.2 4.4E+02 0.0096 26.4 8.2 90 652-742 185-293 (329)
500 PTZ00449 104 kDa microneme/rho 23.9 7.6E+02 0.017 27.5 10.6 92 4-95 573-664 (943)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-78 Score=715.21 Aligned_cols=631 Identities=21% Similarity=0.309 Sum_probs=560.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
...|..++..|++.|++++|+++|++|...+... .+...+..++..|.+.|.+++|..+|+.|.. |+..+|+.++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 4567888999999999999999999999887543 4456778899999999999999999999864 7999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.| ++++|.++|++|.+.|+.||..||+.||.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.++|++||.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 473 (877)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcch---hh------hhH
Q 002814 554 FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE---NR------CRQ 624 (877)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~------~~~ 624 (877)
|++.|++++|.+++.++++....+.. ..++.++.+..+.. .+++...+. .. ...
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~----------------~tynsLIglc~~~y-~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNL----------------VMCRCITGLCLRRF-EKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHHHH-HHHhhhhhhhhhhhccccccccc
Confidence 99999999999999988876544320 23444444322211 111111111 00 112
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHH
Q 002814 625 EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEV 704 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~ 704 (877)
...+|+.+|++|++.|+.||.+||+.++.++++.+..+.+..++++|.
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-------------------------------- 874 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-------------------------------- 874 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc--------------------------------
Confidence 356899999999999999999999999977777777777666666554
Q ss_pred hhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhhc---cccchhhccchHHHHHHHHHHHHHHHHhhhc
Q 002814 705 KLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWS---ESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781 (877)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~ 781 (877)
..+..++..+|++|++++.+. .++|..++++|...|+.++... ...+|+|.++.|+|.++++.||..+|.....
T Consensus 875 -~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~ 951 (1060)
T PLN03218 875 -ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAA 951 (1060)
T ss_pred -cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhc
Confidence 222236678899999987432 3689999999999999987642 3479999999999999999999999999999
Q ss_pred cCCCCCcee-EEeeccccccc-cCchh------hHHHHHHHHhcCCCCcccccCCCceEEechHHHHHHhhcc
Q 002814 782 GHELPKLLS-ILTGWGKHSKV-VGDGA------LRRAVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRES 846 (877)
Q Consensus 782 ~~~~p~~~~-i~~g~g~h~~~-~~~~~------~~~~i~~~l~~l~~pf~~~~~~~g~~~~~~~~~~~wl~~~ 846 (877)
|.++|.... |.| -+||.+. .|+.. +.++|.++|++|+.||+.+... |||..+|.++++||+..
T Consensus 952 g~~lp~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-g~~~~~~~~~~~wl~~~ 1022 (1060)
T PLN03218 952 GAKLPNVTILLPT-EKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESH-GKLRINGLSLRRWFQPK 1022 (1060)
T ss_pred cCcCCcceeeecc-ccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEeccHHHHHHhccc
Confidence 999999987 345 6677655 45443 3469999999999999999988 99999999999999965
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-74 Score=697.70 Aligned_cols=632 Identities=19% Similarity=0.245 Sum_probs=557.9
Q ss_pred chhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002814 139 DVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFET 218 (877)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (877)
...+..+++.+.. .+...|+.+|.+|++.|++++|+++|++|...+.. ++..+|+.++.+|++.+++..+.+++..
T Consensus 137 ~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~--Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR--PDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 3444555565542 34568999999999999999999999999988743 4567999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC
Q 002814 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 219 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~ 298 (877)
+.+.|+.+|+.+|++||.+|++.|++++|.++|++|.. ||.++||.+|.+|++.| ++++|+++|++|.+.|+.||
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENG-ECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999975 79999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 378 (877)
..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|.. ||.++|+++|.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975 599999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+||+||++|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+ ++.||..||+.++.+|++.|..+++.+++..|.+.
T Consensus 444 ~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 444 LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 999999975 5889999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcc
Q 002814 539 GIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKK 618 (877)
Q Consensus 539 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 618 (877)
|+.+|..++++||++|++.|++++|.+.+++. .++ ...||.++..|++.
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d------------------~~s~n~lI~~~~~~---------- 567 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKD------------------VVSWNILLTGYVAH---------- 567 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCC------------------hhhHHHHHHHHHHc----------
Confidence 99999999999999999999999998887654 111 15789999988853
Q ss_pred hhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CC--cchhHHHHHhhccccch
Q 002814 619 ENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF---DN--QVYGVAHGLLMGYRDNI 693 (877)
Q Consensus 619 ~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~---~~--~~~~~~~~l~~~~~~~~ 693 (877)
|+.++|+++|++|.+.|+.||.+||+++|++|++.|++++|.++|++|.+. .| ..|..+..++ .+.|+
T Consensus 568 -----G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l--~r~G~ 640 (857)
T PLN03077 568 -----GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL--GRAGK 640 (857)
T ss_pred -----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH--HhCCC
Confidence 377889999999999999999999999999999999999999999999832 22 2333332222 27899
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhhccccchhhccchHHHHHHHHHH--
Q 002814 694 WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAW-- 771 (877)
Q Consensus 694 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~dl~~~s~g~a~~~~~~w-- 771 (877)
+++|++++++|. ..++..+|++|+.+|...|+.+.|+...++..+..-..... +..++..++....|
T Consensus 641 ~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~--------y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 641 LTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY--------YILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch--------HHHHHHHHHHCCChHH
Confidence 999999999873 34678999999999999999998887766655432211100 11133345666778
Q ss_pred HHHHHHhhhc-c-CCCCCceeEEeeccccccccCchhhHH--HHHHHHhcCCCCcccccCCCceEEechHHHHHHhhccC
Q 002814 772 LLNIHSIVFE-G-HELPKLLSILTGWGKHSKVVGDGALRR--AVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESG 847 (877)
Q Consensus 772 ~~~~~~~~~~-~-~~~p~~~~i~~g~g~h~~~~~~~~~~~--~i~~~l~~l~~pf~~~~~~~g~~~~~~~~~~~wl~~~~ 847 (877)
..++|+.|++ | .+.|+++||+++..+|.|+.||.+|++ +|+.+|++|.. .++..|++ ++
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~----------~~~~~g~~-------~~ 772 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYE----------KMKASGLA-------GS 772 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHH----------HHHhCCcC-------CC
Confidence 5788888887 5 469999999999999999999999985 89999999876 66777777 77
Q ss_pred cceEEEe
Q 002814 848 TLKVLVL 854 (877)
Q Consensus 848 ~~~~~~~ 854 (877)
|..++.+
T Consensus 773 ~~~~~~~ 779 (857)
T PLN03077 773 ESSSMDE 779 (857)
T ss_pred cchhccc
Confidence 7766633
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-70 Score=644.59 Aligned_cols=529 Identities=21% Similarity=0.341 Sum_probs=494.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
..|+.+|.+|.+.|++++|+++|++|...+... .+..+|+.++.+|++.++++.|.+++..|.+.|+.||+.+|+.|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 357888999999999999999999998765333 4567999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
+|++.|++++|.++|++|.+ ||.++||.+|.+|++.| ++++|+++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999975 89999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
.+.+++..+.+.|+.+|..+||+||++|+++|++++|.++|++|.. +|+++||+||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 499999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002814 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (877)
Q Consensus 397 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 476 (877)
+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.+|..+|++||++|+++|++++|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964 69999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 555 (877)
||+||.+|++.|+.++|.++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 699999999999999999
Q ss_pred hcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHH
Q 002814 556 RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQK 635 (877)
Q Consensus 556 ~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 635 (877)
+.|++++| .++|++
T Consensus 474 r~G~~~eA------------------------------------------------------------------~~~~~~ 487 (697)
T PLN03081 474 REGLLDEA------------------------------------------------------------------YAMIRR 487 (697)
T ss_pred hcCCHHHH------------------------------------------------------------------HHHHHH
Confidence 99987755 335555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCCCcchhH
Q 002814 636 MHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAF 715 (877)
Q Consensus 636 m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (877)
| ++.||..+|++|+++|+..|+++.|.++++++. +++| .+...
T Consensus 488 ~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---------------------------------~~~p-~~~~~ 530 (697)
T PLN03081 488 A---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---------------------------------GMGP-EKLNN 530 (697)
T ss_pred C---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---------------------------------CCCC-CCCcc
Confidence 4 588999999999999999999999988887776 4455 45667
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhhccccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeec
Q 002814 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGW 795 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~ 795 (877)
|+.|+++|.+.|++++|.+++++++++|+.+ .|+++||+.+.
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k--------------------------------------~~g~s~i~~~~ 572 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSM--------------------------------------HPACTWIEVKK 572 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc--------------------------------------CCCeeEEEECC
Confidence 9999999999999999999999999888765 79999999999
Q ss_pred cccccccCchhhHH--HHHHHHhcCCCCcccccCCCceEEechHHHHHHhhccCcceEEEeccC
Q 002814 796 GKHSKVVGDGALRR--AVEVLLTGMGAPFWVANCNLGRFISTGPMVASWLRESGTLKVLVLHDD 857 (877)
Q Consensus 796 g~h~~~~~~~~~~~--~i~~~l~~l~~pf~~~~~~~g~~~~~~~~~~~wl~~~~~~~~~~~~~~ 857 (877)
.+|.|+.||..|++ +|+..|.+|.. .++..|++ ++|..+++++++
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~----------~~~~~gy~-------~~~~~~~~~~~~ 619 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMK----------EISEYGYV-------AEENELLPDVDE 619 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHH----------HHHHcCCC-------CCcchhhccccH
Confidence 99999999999985 89999988876 66777888 888888888775
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4e-64 Score=593.15 Aligned_cols=523 Identities=20% Similarity=0.311 Sum_probs=447.8
Q ss_pred HHHHHHhccCCchhHHHHHHhhcccCC-Chh--hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHH
Q 002814 128 ALHHVTAFARDDVSLGDILKKFEFKLC-GAD--DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILG 204 (877)
Q Consensus 128 ~l~~l~~~~~~~~~~~~~l~~~~~~~~-~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (877)
++..+.+.++ ...+..+++.+..... .++ .+..++..|.+.|..++|+++|+.|.. ++..+|+.++.+|+
T Consensus 376 ~y~~l~r~G~-l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 376 AYNRLLRDGR-IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHH
Confidence 4444443333 3445566777765443 222 355688999999999999999988753 35679999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 002814 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVV 284 (877)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~ 284 (877)
+.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.| ++++|.
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl 527 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAF 527 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 285 EIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH--RGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 285 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||.++|++||.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 57899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 363 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|++|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHH
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (877)
|++++|.++|++|.+.|+.||..+|++++..|.+ .++++....+..+..+.... .. .....+.++
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~-----------~~--~n~w~~~Al 832 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRP-----------QI--ENKWTSWAL 832 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhcccc-----------cc--ccchHHHHH
Confidence 9999999999999999999999999999987643 34554444333332211000 00 001112233
Q ss_pred HHHHHHHHHHhcCCcch-------hhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 002814 603 KVFGQLVAEKAGQGKKE-------NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFD 675 (877)
Q Consensus 603 ~~~~~~~~~~~g~~~~~-------~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (877)
.+|.+|.....-..... ....+....+..++++|...+..|+..+|++|+++|++. .++|..+|++|...+
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 44444432111000000 001125667778888888788999999999999998543 478999999998643
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-64 Score=610.93 Aligned_cols=526 Identities=20% Similarity=0.251 Sum_probs=311.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
++.++..|++.|+++.|+++|+.|.. .+..+|+.++.+|++.|++++|.++|++|...|+.||.++|+.+++++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~ 197 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Confidence 34455555555555555555554432 122345555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 318 (877)
++.++++.+.+++..|.+.|+.||..+||.+|.+|++.| ++++|.++|++|. .+|..+||++|.+|++.|++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHH
Confidence 555555555555555555555555555555555555555 5555555555553 23455555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 319 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 399 GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 399 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
.||.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 558 (877)
.||.+|++.|++++|.++|++|.+ +|.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++.|
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 555555555555555555555532 3455555555555555555555555555543 35555555555555555555
Q ss_pred ChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHH
Q 002814 559 TTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHK 638 (877)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~ 638 (877)
+++++.+++..+++..... .....+.++.+|.+. |++++|..+|++|
T Consensus 504 ~l~~~~~i~~~~~~~g~~~----------------~~~~~naLi~~y~k~---------------G~~~~A~~~f~~~-- 550 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGF----------------DGFLPNALLDLYVRC---------------GRMNYAWNQFNSH-- 550 (857)
T ss_pred hHHHhHHHHHHHHHhCCCc----------------cceechHHHHHHHHc---------------CCHHHHHHHHHhc--
Confidence 5555555555444432221 113456677777653 4788899999887
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHH-HHhhcc-ccchHHHHHHHHHHHh-hcCCCcchhH
Q 002814 639 LKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAH-GLLMGY-RDNIWVQALSLFDEVK-LMDSSTASAF 715 (877)
Q Consensus 639 ~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~A~~~~~~~~-~~~~~~~~~~ 715 (877)
.||.++|++|+.+|++.|+.++|.++|++|.+.+.....+++ .++.++ +.|.+++|.++|++|. +.+..++..+
T Consensus 551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 689999999999999999999999999999865433222322 334445 6889999999999998 5566678889
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 716 YNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
|++++++|.+.|++++|.++++++.
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 9999999999999999999998873
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-58 Score=541.62 Aligned_cols=464 Identities=20% Similarity=0.318 Sum_probs=420.4
Q ss_pred HHHHHHHHHhccCCchhHHHHHHhhccc---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHH
Q 002814 125 AEEALHHVTAFARDDVSLGDILKKFEFK---LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201 (877)
Q Consensus 125 ~~~~l~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (877)
+...+..+...++..+ +..++..+... ..+...|..++.+|++.++++.|.+++..+.+.+.. ++..+++.++.
T Consensus 90 ~~~~i~~l~~~g~~~~-Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~n~Li~ 166 (697)
T PLN03081 90 LCSQIEKLVACGRHRE-ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMMNRVLL 166 (697)
T ss_pred HHHHHHHHHcCCCHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHHHHHHH
Confidence 3344444444444333 33444444322 234567889999999999999999999999998854 35679999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
+|++.|++++|.++|++|.+ ||+.+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.| ..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~-~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC-cHH
Confidence 99999999999999999964 6999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ +|.++||+||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 589999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002814 362 AKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT 441 (877)
Q Consensus 362 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 441 (877)
+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.+|..+|++||++|++.|++++|.++|++|. .+|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 579999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-AGLKADVVLYSALIDALC 520 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 520 (877)
||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 699999999999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhH
Q 002814 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQ 600 (877)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (877)
+.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~----------------------------------- 515 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL----------------------------------- 515 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH-----------------------------------
Confidence 999999999999876 578999999999999999998876543
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 002814 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD 675 (877)
Q Consensus 601 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (877)
+++++.+ +.|+ ..+|+.|+++|++.|++++|.+++++|.+.+
T Consensus 516 -------------------------------~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 516 -------------------------------AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred -------------------------------HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4444443 5674 5689999999999999999999999998643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.7e-33 Score=342.43 Aligned_cols=565 Identities=14% Similarity=0.081 Sum_probs=323.1
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
+..+..+..+...+.+.|++++|+..+..++... +.+..++..+...+.+.|++++|.++|+++.+... .+...+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 401 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD---PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAART 401 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 3344445556666666777777777777666553 33344566666677777777777777777665533 2455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
.+...+...|++++|++.|+++.+.... +...+..++..+.+.| ++++|.++++++.... +.+..++..+...+...
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG-QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhC
Confidence 6666666777777777777766654322 2334445555666666 6677777766666542 33555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++...+. .+..++..+...|.+.|+.++|..++
T Consensus 479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776666543 23455566666666666777777777666665432 25566666666666666777776666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
+++...+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.
T Consensus 557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6665553 3445556666666666666777766666666543 4456666666666666666777766666666542 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
+...+..+..+|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+ ..+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 45566666666666666666666666666543 2345666666666666666666666666666543 234455666666
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCc------chhhhhHhH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGK------KENRCRQEI 626 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~ 626 (877)
.+.+.|++++|+..+.+++...++...... +..... ..+.+...+..+.+.......... .-+...++.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-l~~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALL----ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHH-HHHHHH----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 666666666666666666665554311100 000000 001111111111111100000000 001112355
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHh
Q 002814 627 LCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (877)
Q Consensus 627 ~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~ 705 (877)
++|++.|+++.+.. ..+..+++.++..+...|+ ++|..+++++....|++......+...+ ..|++++|.+++++++
T Consensus 787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666666665532 1244455566666666666 5566666666555555544444433322 4556666666666666
Q ss_pred hcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHh
Q 002814 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (877)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (877)
+.+| .+..++..++++|++.|++++|.++++++
T Consensus 865 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 865 NIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred hhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665 35556666666666666666666665554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-31 Score=331.17 Aligned_cols=588 Identities=13% Similarity=0.041 Sum_probs=472.1
Q ss_pred cCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHH
Q 002814 136 ARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNI 215 (877)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (877)
+..+.++..+.+.+...+.....+..+...+...|++++|...|..++... +.+...+..++..+.+.|++++|...
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 444444444444444444344455566777889999999999999999875 34456778889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Q 002814 216 FETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~ 295 (877)
++.+..... .+...+..+...+.+.|++++|.++|+++.+.... +...+..+...+...| ++++|++.|+++.+...
T Consensus 352 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 352 LSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQG-DPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhhCC
Confidence 999987654 37889999999999999999999999999875433 6677888888899999 99999999999988653
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 002814 296 QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (877)
Q Consensus 296 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 375 (877)
. .......++..+.+.|++++|..+++.+.+. .+.+..+++.+...|...|++++|.+.|+++.+... .+...+..+
T Consensus 429 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 505 (899)
T TIGR02917 429 E-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANL 505 (899)
T ss_pred c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHH
Confidence 3 3455667788999999999999999999875 345788999999999999999999999999987643 367788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 455 (877)
...+...|++++|.+.|+++.... +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|.+.|++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 999999999999999999998875 5578889999999999999999999999998776 66778889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
++|..+++++.+. .+.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|..+|+++
T Consensus 584 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 584 KKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876 35578899999999999999999999999998865 347788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcC
Q 002814 536 TKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQ 615 (877)
Q Consensus 536 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 615 (877)
.+.. +.+..++..+...+...|++++|+++++...+..+.........+..... .+.++..+..|.+........
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR----QKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCc
Confidence 8753 33567999999999999999999999999888877655433333222211 145566666665543221111
Q ss_pred Cc-----chhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-
Q 002814 616 GK-----KENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY- 689 (877)
Q Consensus 616 ~~-----~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~- 689 (877)
.. ......|+.++|++.++++.+.. ..+..++..+...|.+.|+.++|.+.|+++.+.+|++..+..++...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 00 00123357788888888887732 236667888888888889999999999998888888777777665544
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhc
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (877)
..|+ .+|+.+++++++..| .+..+++.++.+|...|++++|..+++++.+.+.
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4555 779999999888888 6778888899999999999999999888887654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.5e-24 Score=265.65 Aligned_cols=435 Identities=14% Similarity=0.062 Sum_probs=246.6
Q ss_pred ccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHH-------------HHHHHHH
Q 002814 135 FARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGK-------------LASAMIS 201 (877)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~l~~ 201 (877)
..+++.+.+.+.+.+...+.+++.+..++..+.+.|+.++|.+.++++.+..+..+.-.. ....++.
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 444444444444555666777888888899999999999999999999888643221110 1133455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
.+.+.|++++|.+.|+.+.+...+........+.......|+.++|++.|+++.+..+. +...+..+...+...| +.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g-~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSG-RRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccC-CHH
Confidence 78889999999999999987643321212212222233468999999999999886433 5667778888888888 899
Q ss_pred HHHHHHHHHHHCCCCC----------------CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 282 HVVEIFDDMLRNGVQP----------------DR---ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p----------------~~---~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 342 (877)
+|++.++++....... +. ..+...+..+-.....+.|...++.+......|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 9999999886542110 00 001111111111122334444444433322122211 122344
Q ss_pred HHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HH
Q 002814 343 AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL-DRVSY------------NT 409 (877)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~------------~~ 409 (877)
.+...|++++|+..|++..+... -+...+..+...|.+.|++++|+..|++..+..-.. +...+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 55566666666666666665432 255666666666666666666666666666542111 11111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 489 (877)
....+.+.|++++|+..|+++.+.. +.+...+..+...|...|++++|++.|+++++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 2334556666666666666666554 3455556666666666666666766666666542 223444555555543 345
Q ss_pred HHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCh
Q 002814 490 YKEAMQIFREFKQAGL--------KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATT 560 (877)
Q Consensus 490 ~~~A~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 560 (877)
.++|..+++.+..... ......+..+...+...|++++|++.|++.++. .|+ ...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 5666655554322100 001122334455555666666666666666653 233 33555566666666666
Q ss_pred hhhHHHHHHHhhhhhhhh
Q 002814 561 ECTVDDVERDLGKQKESA 578 (877)
Q Consensus 561 ~~a~~~~~~~l~~~~~~~ 578 (877)
++|+..++++++..|+..
T Consensus 512 ~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHHHHcCCCCH
Confidence 666666666666555443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.3e-23 Score=256.99 Aligned_cols=564 Identities=12% Similarity=0.053 Sum_probs=369.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
..+.+...|++++|++.|+.++...+ +................|+.++|++.|+++.+..+. +...+..+...+...
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p--~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAP--PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCC--CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHcc
Confidence 45568889999999999999987752 221111111222233569999999999999987543 788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HH-----------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPN--LV-----------------TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~--~~-----------------~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~ 302 (877)
|+.++|++.|+++........ .. .+...+..+-... ..+.|...+.++......|+...
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~-~~~~A~~~L~~~~~~~~dp~~~~- 272 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD-SVAAARSQLAEQQKQLADPAFRA- 272 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch-HHHHHHHHHHHHHHhccCcchHH-
Confidence 999999999999875321100 01 1111122122222 24455555555544322333221
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC-CHHHHH--------
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP-NVVTYS-------- 373 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~-------- 373 (877)
..+...+...|++++|+..|++.++.. +.+...+..|..+|.+.|++++|++.|++..+..... +...|.
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 233556777889999999999888764 3367888888889999999999999998887653221 111121
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 374 ----TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 374 ----~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
.+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 22446678889999999999888774 4456677778888889999999999999888765 44566676676666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVS--------PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
. .++.++|..+++.+...... -....+..+...+...|++++|++.|++.++.... +...+..+...|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4 45678888877665332100 01223455667777888888888888888876532 56677778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh--hhhhh------hhccCchhhh
Q 002814 522 NGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES--ANLDA------MCSQDDKDVQ 592 (877)
Q Consensus 522 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~--~~~~~------~~~~~~~~~~ 592 (877)
.|++++|+..|+++.+. .| +...+..+...+...|+.++|+..+++........ ..+.. .+......
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l-- 583 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL-- 583 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH--
Confidence 88888888888888764 23 33444445555667788888877766543211100 00000 00000000
Q ss_pred hhccchhHHHHHHHHHHHHHhcC--CcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 002814 593 EAGRTDNQIIKVFGQLVAEKAGQ--GKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLE 669 (877)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~ 669 (877)
...+.++.++..+.......... ...-+...+++++|++.|++.++ ..| |...+..++.++...|+.++|.+.++
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 01122333333332100000000 00002234588999999999988 456 56678899999999999999999999
Q ss_pred HHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCc-----chhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 670 ELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSST-----ASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
.+.+.+|.+......+...+ ..|++++|.++++++++..+.. +..++..++.++...|++++|...+++++.
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99888777666555544333 6789999999999998876532 234677789999999999999999988864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.8e-21 Score=230.06 Aligned_cols=547 Identities=9% Similarity=-0.004 Sum_probs=348.8
Q ss_pred cCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHH
Q 002814 136 ARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNI 215 (877)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (877)
+..++++..+-+.+...+.++..+..+.+.|...|++++|+..++++++.. +.+...+..+. ..++.++|..+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La----~i~~~~kA~~~ 130 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLA----AIPVEVKSVTT 130 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHH----HhccChhHHHH
Confidence 344445555555566666666677777777777788888888777777764 34444444332 22777777778
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCCHHHHHHH
Q 002814 216 FETALNEGYGNTVYAFSALISA--------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV-IDACGKGGVDFKHVVEI 286 (877)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~~a~~~ 286 (877)
|+++.+..+. +..++..+... |.+.++..+|++ .......|+..+.... ...|.+.+ ++++|+++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~-dw~~Ai~l 204 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLK-QWSQADTL 204 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 8777776443 45555555554 555544444443 3332334445444444 67777777 77778888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002814 287 FDDMLRNGVQPDRITFNSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (877)
Q Consensus 287 ~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (877)
+.++.+.+.. +..-...|..+|.. .++ +++..+++.. +..|...+..+++.|.+.|+.++|.++++++.....
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 8888777543 44445556666666 355 6666665432 224677777788888888888888888777765422
Q ss_pred C-CCHHHHHH------------------------------HHHHHHHcCCHHHHHHHHH---------------------
Q 002814 366 S-PNVVTYST------------------------------MIDGYAKAGRLDDALNMFS--------------------- 393 (877)
Q Consensus 366 ~-pd~~~~~~------------------------------li~~~~~~g~~~~A~~~~~--------------------- 393 (877)
. |...+|-- ++..+.+.++++-+.++..
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 2 33333311 1333444455544433321
Q ss_pred --------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 002814 394 --------EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-G-IRKDAVTYNALLGGYGKQGK---YDEVRR 460 (877)
Q Consensus 394 --------~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~ 460 (877)
.|.... +-+.....-+.-...+.|+.++|..+|+..... + -..+.....-++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 000000 001111222222334567777777777776542 1 12344445566677766655 223322
Q ss_pred H-------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 461 M-------------------------FEQMKADCVSP--NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (877)
Q Consensus 461 ~-------------------------~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 513 (877)
+ +...... .++ +...|..+..++.. ++.++|...|.+..... |+.....
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 2 1111111 123 56677777777776 78888888777777653 5554444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhh
Q 002814 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQE 593 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 593 (877)
.+...+...|++++|+..|+++... .|+...+..+..++.+.|+.++|...+.+++...++...+...
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~---------- 581 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW---------- 581 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH----------
Confidence 4455556888899999888887653 4555566677777888888888888888888766543211110
Q ss_pred hccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 002814 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRL 673 (877)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (877)
+.... ...|++++|+..|++.++ +.|+...+..+..++.+.|+.++|...|+++..
T Consensus 582 -------La~~l---------------~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 582 -------LHAQR---------------YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred -------HHHHH---------------HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000 011378889999999987 668888899999999999999999999999999
Q ss_pred cCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 674 FDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 674 ~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+|++..+..++...+ ..|++++|+..++++++.+| .+..++..++.+|...|++++|...++++.+..
T Consensus 638 l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 638 LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999988877776544 67899999999999999999 788999999999999999999999998887654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-22 Score=211.00 Aligned_cols=460 Identities=16% Similarity=0.177 Sum_probs=337.3
Q ss_pred HHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
..+++++.....+.+....+...+-+.|++.+|.+.....-+++.... ...-.+-..+....+.+...+--...++.
T Consensus 35 ~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~---~~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 35 SSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT---ERLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcc---cceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 345566555555556666777788889999999998766655543222 22333445566777777766655555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (877)
Q Consensus 223 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~ 302 (877)
.. .-..+|..+.+.+...|++++|+.+++.+.+...+ .+..|..+..++...| +.+.|.+.|.+.++. .|+....
T Consensus 112 ~~-q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~-~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 112 NP-QGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQG-DLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred cc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcC-CCcccHHHHHHHHhc--Ccchhhh
Confidence 32 24678999999999999999999999999985433 5788999999999999 999999999999885 5665543
Q ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHH
Q 002814 303 -NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYA 380 (877)
Q Consensus 303 -~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~ 380 (877)
+.+.......|++++|...|.+.++... --.+.|+.|...+...|++..|++.|++..+. .|+ ...|-.|...|.
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK 263 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH
Confidence 3445556668999999999998887532 23678888999999999999999999988875 333 467888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
..+.++.|+..|.+..... +...+.+..+...|...|.+|.|+..|++.++.. +.-...|+.|..++-..|++.+|.+
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHH
Confidence 8888899888888877653 3345777888888888889999999988888764 3347788888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (877)
.|.+.+... .--....+.|...|...|++++|..+|....+-... -...++.|...|-+.|++++|+..|++.+. +
T Consensus 342 cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 342 CYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 888888762 334677788888888888888888888888774311 345677888888888888888888888876 5
Q ss_pred CCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcch
Q 002814 541 RPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (877)
Q Consensus 541 ~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 619 (877)
.|+.. .|+.+...|-..|+.+.|++.+.+++..+|.-
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~------------------------------------------ 455 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF------------------------------------------ 455 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH------------------------------------------
Confidence 67654 56666555555555555555544444433321
Q ss_pred hhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHh
Q 002814 620 NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (877)
Q Consensus 620 ~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~ 686 (877)
...++.|.+.|-..|++.+|+..|+++++++|+......+++
T Consensus 456 -------------------------AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 456 -------------------------AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred -------------------------HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 223566777777778888888888777777776665555553
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=4.7e-20 Score=218.06 Aligned_cols=551 Identities=12% Similarity=0.017 Sum_probs=386.7
Q ss_pred HHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHH-------
Q 002814 130 HHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI------- 202 (877)
Q Consensus 130 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 202 (877)
..++..++.+.+...+-+.+...+.+...+..+ +..+++.+|..+|++++... |.+..++..+...
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L----a~i~~~~kA~~~ye~l~~~~---P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKRHPGDARLERSL----AAIPVEVKSVTTVEELLAQQ---KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----HHhccChhHHHHHHHHHHhC---CCChhHHHHHHHHhhccchh
Confidence 334555666666666666666655433333333 22289999999999999986 4444566555555
Q ss_pred -HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCC
Q 002814 203 -LGRLGKVDLAKNIFETALNEGYGNTVYAFSAL-ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK-GGVD 279 (877)
Q Consensus 203 -~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~ 279 (877)
|.+. ++|.+.++ .......|+..+.... .+.|.+.|++++|++++.++.+.++. +......+..+|.. .+ +
T Consensus 159 ~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~-~ 232 (987)
T PRK09782 159 RLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL-D 232 (987)
T ss_pred hhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC-H
Confidence 5555 55555555 3333334445544444 89999999999999999999997654 55556777778887 46 5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHH-------------------
Q 002814 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNT------------------- 339 (877)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~------------------- 339 (877)
+++..+++.. ++-|...+..++..|.+.|+.++|.++++++...-.. |...+|.-
T Consensus 233 -~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 233 -DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred -HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 7787776542 3358888999999999999999999999998664322 33343321
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHchhC--------CC--------------------CCCHHHHHHHHHHHH
Q 002814 340 -----------LLDAICKGAQMDLAFEIMAEMPAK--------NI--------------------SPNVVTYSTMIDGYA 380 (877)
Q Consensus 340 -----------li~~~~~~g~~~~A~~~~~~m~~~--------g~--------------------~pd~~~~~~li~~~~ 380 (877)
++..+.+.++++.+.++.+.-... +. +-+....-.+.-...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLM 387 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 144455666666666553311100 00 112222333334456
Q ss_pred HcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------H---HHH
Q 002814 381 KAGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGR---FEEALLV----------------------C---KEM 430 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~---~~~A~~~----------------------~---~~m 430 (877)
+.|+.++|..+|+..... +...+.....-|+..|.+.+. ..++..+ + ...
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 789999999999988762 123345555677787777765 2333222 1 122
Q ss_pred HHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 431 ESSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 431 ~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
.... +. +...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...|+++... .|+
T Consensus 468 l~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 468 LGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred cccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 2111 34 67788888888876 8999999988888775 466555444555567899999999999998664 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccC
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQD 587 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 587 (877)
...+..+..++.+.|+.++|...|++.++.. |+.. .+..+...+.+.|++++|+..++++++..|+ ...
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a------- 611 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANA------- 611 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH-------
Confidence 5567777888999999999999999998864 4443 4444455556779999999999999998875 211
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHH
Q 002814 588 DKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASM 666 (877)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~ 666 (877)
+..+..++.+ .+++++|+..|++..+ ..|+ ...+..+..++...|+.++|++
T Consensus 612 ----------~~~LA~~l~~---------------lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 612 ----------YVARATIYRQ---------------RHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred ----------HHHHHHHHHH---------------CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1222222222 2478899999999988 5675 4567888889999999999999
Q ss_pred HHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 667 LLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.|+.+.+.+|++..+..++...+ ..|++++|+..++++++.+| .+..+....++++....++++|.+-+..+...
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998888886665 78999999999999999999 78889999999999999999998877665443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-21 Score=204.13 Aligned_cols=433 Identities=16% Similarity=0.153 Sum_probs=360.8
Q ss_pred HHHHHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhc
Q 002814 127 EALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL 206 (877)
Q Consensus 127 ~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (877)
++.+.++..+....+.......+..++.+.+....+-..+.+..+++.....-..+++.. +....+|+.+.+.+...
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~---~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN---PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc---chHHHHHHHHHHHHHHh
Confidence 444555655555555555555555555555555556667777788888777777777765 44567899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHH
Q 002814 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVE 285 (877)
Q Consensus 207 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~ 285 (877)
|++++|+.+|+.+++.... .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.. ....| ++++|..
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~G-rl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEG-RLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhc-ccchhHH
Confidence 9999999999999987543 689999999999999999999999999987 45777665544443 44567 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
.|.+.++.... -.+.|+.|.-.+...|+...|++.|++.++.. |+ ...|..|...|...+.++.|+..|.+.....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99999876321 34678999999999999999999999999864 44 6789999999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYN 443 (877)
Q Consensus 365 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 443 (877)
. -..+.+..|...|...|.+|.|+..|++.++. .|+ ...|+.|..++-..|++.+|...|.+.+... +......+
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 2 24678888899999999999999999999987 555 6789999999999999999999999998764 45678889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCK 521 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 521 (877)
.|...|...|.+++|.++|....+- .|. ....+.|...|-+.|++++|+..|++.++. +|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHH
Confidence 9999999999999999999999875 444 567899999999999999999999999884 455 5689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 522 NGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 522 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
.|+++.|+..+.+.+. +.|... .++.|...|-..|++.+|++.++.+|++.|+.++
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999988 567754 8899999999999999999999999999998764
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.1e-19 Score=194.14 Aligned_cols=557 Identities=14% Similarity=0.113 Sum_probs=398.2
Q ss_pred hHHHHHHHH--HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 158 DYTFLLREL--GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 158 ~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
....+.+++ ...++|..|+.+|..++...+....++ ...+..++.++|+.+.|+..|.+++...+ -++.++-.|.
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHH
Confidence 344455555 357899999999999988876655553 34566788899999999999999998754 2444444443
Q ss_pred HHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 002814 236 SAYG---RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PDRITFNSLLAVCS 310 (877)
Q Consensus 236 ~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~ 310 (877)
-.-. ....+..++.++...-..+.. |.+..+.|.+.|.-.| ++..+..+...++..... .-...|..+.++|-
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3222 234566777777777654433 6778888888888888 999999999999875321 11245778899999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLD 386 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~ 386 (877)
..|++++|..+|.+..+..-.-.+..+.-|..+|.+.|+++.+...|+.+.+.. +-+..|...|...|...+ ..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHH
Confidence 999999999999888776422224556678899999999999999999998763 336678888888887775 567
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE----MESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (877)
Q Consensus 387 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (877)
+|..++.+..+.- +.|...|..+...+....-+. ++..|.. +...+-.+.....|.+...+...|++++|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 8888888877764 567778888777776544433 3666654 344555678899999999999999999999999
Q ss_pred HHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHHH
Q 002814 463 EQMKAD---CVSPNL------LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV-LYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 463 ~~m~~~---g~~p~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~ 532 (877)
.+.+.. ...+|. .+--.+...+-..++++.|.+.|..+.+.. |..+ .|..++...-..+...+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 998765 122333 222235566667789999999999998763 4443 3333433333457788999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHH
Q 002814 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK 612 (877)
Q Consensus 533 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (877)
++..+.. .-|...++.+...+.+..++..|.+-++..+.......+.+..+..+++.. ..+
T Consensus 554 k~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~--------------~~l---- 614 (1018)
T KOG2002|consen 554 KDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI--------------QAL---- 614 (1018)
T ss_pred HHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH--------------HHh----
Confidence 9988652 345566666666888888887777766655554333222233322222110 000
Q ss_pred hcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-c
Q 002814 613 AGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-R 690 (877)
Q Consensus 613 ~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~ 690 (877)
..........++.+.+|+++|.+.++ ..| |...-|.++-.++..|++.+|+.+|..+++.-.+...++.|+...| .
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 00111112345688899999999988 556 7888899999999999999999999999876555556666665444 6
Q ss_pred cchHHHHHHHHHHHhh-cCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhch
Q 002814 691 DNIWVQALSLFDEVKL-MDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (877)
Q Consensus 691 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (877)
.|+|-.|+++|+.+.+ ...+++..+..+|+.++...|++.+|.+....++.....
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 8899999999999876 455678999999999999999999999998887765443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.9e-18 Score=201.64 Aligned_cols=253 Identities=13% Similarity=0.061 Sum_probs=171.2
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 417 LGRFEEALLVCKEMESSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 494 (877)
.+++++|...|++..+.+ .+.+...|+.+...+...|++++|+..|++.++.. +-+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776543 12234556666677777777777777777776642 223556667777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 495 QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
..|+++++.. +.+...|..+...+...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~-------- 454 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMA-------- 454 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHH--------
Confidence 7777776654 235667777777777777777777777777764 343 3455555666666665555444
Q ss_pred hhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 002814 574 QKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAIL 652 (877)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll 652 (877)
.|++.+. ..| +...++.++
T Consensus 455 ----------------------------------------------------------~~~~al~--~~P~~~~~~~~lg 474 (615)
T TIGR00990 455 ----------------------------------------------------------TFRRCKK--NFPEAPDVYNYYG 474 (615)
T ss_pred ----------------------------------------------------------HHHHHHH--hCCCChHHHHHHH
Confidence 4444333 234 344566677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHH-------Hhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHG-------LLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~-------l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
.++...|++++|.+.|+.+...+|.......+ .+..+ ..+++++|+++++++++++| .+...+..|++++.
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~ 553 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLL 553 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 77778888888888888887776653222111 11112 35889999999999999998 66778999999999
Q ss_pred hcCchhhHHHHHHHhhhh
Q 002814 725 HFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 725 ~~g~~~~A~~~~~~~~~~ 742 (877)
..|++++|..+++++.+.
T Consensus 554 ~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 554 QQGDVDEALKLFERAAEL 571 (615)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999888654
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.3e-19 Score=198.65 Aligned_cols=309 Identities=14% Similarity=0.142 Sum_probs=202.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCC
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD---RITFNSLLAVCSRGGL 314 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~ 314 (877)
+...|++++|+..|+++.+.+.. +..++..+...+...| ++++|..+++.++..+..++ ..++..++..|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555555543211 3334555555555555 55555555555554321111 1345555666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 002814 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN----VVTYSTMIDGYAKAGRLDDALN 390 (877)
Q Consensus 315 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~ 390 (877)
+++|..+|+++.+.. +.+..+++.++..+.+.|++++|++.++++.+.+..++ ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666666542 23455666666666666666666666666665432221 1234556667777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 470 (877)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888777653 33455677777888888888888888888876542222456778888888889999999988888875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHH
Q 002814 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK---NGLVESAVSLLDEMTKEGIRPNVVTY 547 (877)
Q Consensus 471 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (877)
.|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|+..
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 456666788888888899999999999888775 4788888888887765 458889999999998776666655
Q ss_pred HHHHHHHhhcCCh
Q 002814 548 NSIIDAFGRSATT 560 (877)
Q Consensus 548 ~~li~~~~~~g~~ 560 (877)
..|.++|-.
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 335555543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.6e-19 Score=198.20 Aligned_cols=301 Identities=17% Similarity=0.156 Sum_probs=184.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCC
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN---LVTYNAVIDACGKGGV 278 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~ 278 (877)
.+...|++++|...|+++.+.+. .+..++..+...+...|++++|+.+++.+...+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g- 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG- 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-
Confidence 34455666666666666665432 2445566666666666666666666666655321111 234555566666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLDAICKGAQMDLAF 354 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~ 354 (877)
++++|..+|+++.+.. ..+..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6666666666666542 22455566666666666666666666666665432221 123445666666677777777
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (877)
Q Consensus 355 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 434 (877)
+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......+++.++.+|.+.|++++|...++++.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777666543 223456666667777777777777777777655322223456667777777777777777777776653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK---GGLYKEAMQIFREFKQAGLKADVV 510 (877)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 510 (877)
|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.+++..+|++|.+.++.++..
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45555567777777777777777777777664 5677777777666654 446777777777777666555544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=8.6e-18 Score=196.08 Aligned_cols=405 Identities=14% Similarity=0.052 Sum_probs=301.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
+......+.+.|++++|++.|+.++...+ +...|..+..+|.+.|++++|++.++.+++.... +..+|..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p----~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP----DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 44567778899999999999999998752 2457888999999999999999999999987543 678999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH----------------HH---------C
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDM----------------LR---------N 293 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m----------------~~---------~ 293 (877)
...|++++|+..|......+...+......+...+.+. ....+...++.- .. .
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKF--AESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 99999999999887765432211221111111111100 011111111000 00 0
Q ss_pred --CCCCCH-HHHHHHHHH---HHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002814 294 --GVQPDR-ITFNSLLAV---CSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (877)
Q Consensus 294 --g~~p~~-~t~~~ll~~---~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (877)
...++. ..+..+... ....+++++|.+.|++.++.+ .+.+...|+.+...+...|++++|+..|++..+...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 000000 001111111 123468999999999999865 233467788899999999999999999999987632
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 366 SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (877)
Q Consensus 366 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 445 (877)
-+...|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|+..|++.++.. +.+...+..+
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 246688899999999999999999999998774 4567889999999999999999999999999876 5678888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH
Q 002814 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV------LYSALIDAL 519 (877)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~ 519 (877)
...+.+.|++++|+..|++.++. .+.+...|+.+...+...|++++|++.|++..+.....+.. .++..+..+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999875 34467889999999999999999999999998754221111 122222334
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
...|++++|.+++++..+. .|+. .++..+...+.+.|++++|+..++++++....
T Consensus 519 ~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 4579999999999999875 3444 47889999999999999999999999887553
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.4e-17 Score=179.03 Aligned_cols=524 Identities=14% Similarity=0.086 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG--YGNTVYAFSALISAYGRSGYCQEAIS 249 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 249 (877)
.+.|...|...++.. +++.-.+..-+......|++..|..+|..++... ..+|+.+ .+...+.+.|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s---p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS---PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC---CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 578888888888774 4443232222333445678999999999976543 3344322 33355668899999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002814 250 VFNSMKRYNLKPN-LVTYNAVIDACG---KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (877)
Q Consensus 250 ~~~~m~~~g~~p~-~~~~~~ll~~~~---~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 325 (877)
.|.+..+.+ |+ +.++..|.-.-. ... .+..+..++...-.... -|+...+.|.+.|.-.|+++.+..+...+
T Consensus 221 a~~ralqLd--p~~v~alv~L~~~~l~~~d~~-s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 221 AFERALQLD--PTCVSALVALGEVDLNFNDSD-SYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHhcC--hhhHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 999998843 43 333322222111 122 45667777776665433 36778888889999999999999999888
Q ss_pred HHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 326 VHRGID--QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (877)
Q Consensus 326 ~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 403 (877)
...... .-...|..+..+|-..|++++|...|.+..+..-.--+..+--+...|.+.|+++.+...|+...+.. +-+
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 875321 11345778889999999999999999887765322113445567888999999999999999988763 445
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHH
Q 002814 404 RVSYNTVLSIYAKLG----RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM----KADCVSPNLL 475 (877)
Q Consensus 404 ~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~ 475 (877)
..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...|....- ..++.+|..+ ...+..+-..
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 677777777777665 5678888888877665 5677888777777765443 3336666554 3455557788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQA---GLKADV------VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV- 545 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 545 (877)
..|.+...+...|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.|..+++. .|+.+
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 8899999999999999999999887654 112222 23334555666788899999999999874 46655
Q ss_pred HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHh
Q 002814 546 TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQE 625 (877)
Q Consensus 546 ~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 625 (877)
.|.-+.......+.+.+|...+..++..+..+++..++++..++.. .+
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k--------------------------------~~ 579 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK--------------------------------SE 579 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh--------------------------------hh
Confidence 3444432333446777888888887777665554433333222111 12
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH------------cCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-cc
Q 002814 626 ILCILGVFQKMHKL-KIKPNVVTFSAILNACS------------RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RD 691 (877)
Q Consensus 626 ~~~A~~~~~~m~~~-g~~Pd~~t~~~ll~a~~------------~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 691 (877)
+.-|-+-|...... ...+|..+..+|++.|. ..+..++|+++|.+++..+|.+..+.+++...+ ..
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 22233333333221 13378888888888665 235678999999999999999988888875544 68
Q ss_pred chHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 692 NIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
|++.+|..+|.++.+--. ....+|-.|+.+|..+|+|..|.+++......
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999987544 45678999999999999999999999876543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.9e-17 Score=192.32 Aligned_cols=329 Identities=11% Similarity=0.006 Sum_probs=179.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG 277 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 277 (877)
.++..+.+.|++++|..+++.++..... +..++..++.+....|++++|+..|+++.+..+. +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC
Confidence 3444555566666666666666554332 3444444445555566666666666666553321 3444555555555566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 278 VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (877)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (877)
++++|+..|+++++... .+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|+.++
T Consensus 125 -~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 -QYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred -CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 66666666666655421 13444555555666666666666666655543221 22222222 2355556666666666
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHC
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEE----ALLVCKEMESS 433 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 433 (877)
+.+.+....++...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...|...|++++ |+..|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 665544322233344444555666666666666666665543 3345555556666666666654 56666666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 002814 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV-VLY 512 (877)
Q Consensus 434 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 512 (877)
. +.+..++..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 3 3445566666666666666666666666666542 2234455556666666666666666666666543 232 223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 513 SALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
..+..++...|+.++|+..|++..+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344556666666666666666655
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=3.2e-17 Score=190.37 Aligned_cols=333 Identities=9% Similarity=-0.000 Sum_probs=274.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
...++..+.+.|++++|+.+++.++...+ ....++..++.++...|++++|...|+++....+. +..++..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p---~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAK---NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCC---CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 44567788899999999999999988863 33446677778888899999999999999987543 678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 318 (877)
...|++++|++.|+++.+.... +...+..+...+...| ++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMD-KELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875322 5678888899999999 999999999988776433 33333333 347889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHH
Q 002814 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD----ALNMFSE 394 (877)
Q Consensus 319 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~----A~~~~~~ 394 (877)
...++.+++.....+...+..+...+.+.|++++|++.|+++..... .+...+..+...|...|++++ |+..|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 99999988864334455566677889999999999999999988753 367888899999999999986 8999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (877)
Q Consensus 395 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 474 (877)
..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..+|.+.|++++|...|+++.+. .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 98774 4467789999999999999999999999999875 556778888999999999999999999999876 3443
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 475 -LTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 475 -~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
..+..+..++...|+.++|...|++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344456778899999999999999998764
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=5.9e-17 Score=192.39 Aligned_cols=411 Identities=13% Similarity=0.025 Sum_probs=310.0
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
..++......+......|+.++|+++|..+.... +.....+..+..++...|++++|.++|+++++..+ .+...+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~ 87 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQR 87 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 3456666666777788999999999999887643 34455688899999999999999999999988643 3577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
.++..+...|++++|+..++++.+.... +.. +..+..++...| +.++|+..++++++.... +...+..+..++...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 8999999999999999999999875322 455 888888888999 999999999999987443 555666778888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHchhC-CCCCCHH-HH----
Q 002814 313 GLWEAARNLFNEMVHRGIDQDI------FTYNTLLDAIC-----KGAQM---DLAFEIMAEMPAK-NISPNVV-TY---- 372 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~~-~~---- 372 (877)
|..+.|++.++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999998876654 1221 11222232222 22334 7788888888754 1122221 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNALLG 447 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~ 447 (877)
...+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+.+|+++.+.. +.+ ...+..+..
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHH
Confidence 11134556779999999999999887522 332 22335778999999999999999987653 111 345666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCV-----------SPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~-----------~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 513 (877)
++.+.|++++|.++++++.+... .|+ ...+..+...+...|++++|+++++++.... +-+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 88999999999999999987521 123 2345677788889999999999999998865 34678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
.+...+...|++++|++.+++..+. .|+. ..+..+...+.+.|++++|...++++++..|+++.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999884 4664 46667777889999999999999999999998763
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.4e-15 Score=180.63 Aligned_cols=375 Identities=10% Similarity=0.051 Sum_probs=253.5
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
.+.....-.+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|+.+|++..+... .+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344456677788899999999999999998632 34667799999999999999999999999887532 2566777888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM 350 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 350 (877)
..+...| ++++|+..++++++... .+.. +..+..++...|+.++|+..++++.+... .+...+..+..++.+.|..
T Consensus 91 ~~l~~~g-~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAG-QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCC-CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 8889999 99999999999998733 2455 88888899999999999999999999743 3566777788899999999
Q ss_pred HHHHHHHHHchhCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHH
Q 002814 351 DLAFEIMAEMPAKNISPNV------VTYSTMIDGYA-----KAGRL---DDALNMFSEMKFL-GIGLDRV-SY----NTV 410 (877)
Q Consensus 351 ~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~~-~~----~~l 410 (877)
++|++.++..... |+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 9999999877752 331 11122222222 22233 6677777777754 1122221 11 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHh
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP---NLLTYSTLIDVYSK 486 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~ 486 (877)
+.++...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+..... ....+..+..++.+
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 23445667888888888888776521 221 22224667788888888888888876542111 13445566667778
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQAGL-----------KAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
.|++++|.++++.+.+... .|+ ...+..+...+...|+.++|+++|+++.... +-+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888888888887776421 112 1234455666777777777777777776641 223446666666
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.+...|+.++|++.++++++..|+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Confidence 666666666665555555544443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=8.3e-15 Score=170.32 Aligned_cols=443 Identities=11% Similarity=0.058 Sum_probs=295.2
Q ss_pred HHHHHHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHh
Q 002814 126 EEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR 205 (877)
Q Consensus 126 ~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (877)
.+..-.....+....++..+.+.+...+.++.....++..+...|+.++|+..+++++... +........++..+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHHHHHHHH
Confidence 3333334444555555555555555444443222366666677788888888877777221 2222333444567777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHH
Q 002814 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285 (877)
Q Consensus 206 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~ 285 (877)
.|+++.|+++|+++++..+. +..++..++..|...++.++|++.++++... .|+...+-.++..+...+ +..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~-~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD-RNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc-hHHHHHH
Confidence 78888888888888776544 4666667777777778888888888877763 355555533333333334 4545788
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHH---------HcCC---HH
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY--NTLLDAIC---------KGAQ---MD 351 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~---------~~g~---~~ 351 (877)
.++++++.... +...+..+..++.+.|-...|.++..+-.+. +.+....+ ...+.-.. ...+ .+
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 88888776322 5566667777777777777777665543321 11111111 00000111 1112 23
Q ss_pred HHHHHHHHchhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 352 LAFEIMAEMPAK-NISPNV-VTY----STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 352 ~A~~~~~~m~~~-g~~pd~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
.|+.-++.+... +-.|.. ..| .-.+-++...|++.++++.|+.+...+.+.-..+-..+.++|...++.++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 444445554431 111221 222 23455778899999999999999988877667788999999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHHHh
Q 002814 426 VCKEMESSG-----IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-------------VSPNL-LTYSTLIDVYSK 486 (877)
Q Consensus 426 ~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~-~t~~~li~~~~~ 486 (877)
+|+.+.... ..++......|.-+|...+++++|..+++++.+.- ..||- ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999987643 12345556788899999999999999999998731 11222 234456777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHH
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~ 565 (877)
.|++.+|.+.++++.... +-|......+.+.+...|.+.+|++.++.+... .|+. .+......++...|++++|..
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999998876 458999999999999999999999999777664 5554 477788888899999999999
Q ss_pred HHHHHhhhhhhhhhh
Q 002814 566 DVERDLGKQKESANL 580 (877)
Q Consensus 566 ~~~~~l~~~~~~~~~ 580 (877)
+....++.+|++...
T Consensus 506 ~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 506 LTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhCCCchhH
Confidence 999999999987633
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=5.2e-14 Score=163.76 Aligned_cols=448 Identities=13% Similarity=0.110 Sum_probs=268.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-+-...+.|+++.|++.|..+++..+..+ ..++ .++..++..|+.++|+.++++..... .........+...|...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc
Confidence 34445677888888888887777652211 1233 66777777788888888887776321 22344444446677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
|++++|+++|+++.+.... |...+..++..+...+ +.++|++.++++... .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 8888888888888775433 4555556666677777 777888877777665 44555554444444445566557777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 401 (877)
++++.+.. +.+...+..++.++.+.|-...|+++..+-... + +...+.- +. .+.|.+..+- +..
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~-l~-------~~~~a~~vr~----a~~ 255 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQ-LE-------RDAAAEQVRM----AVL 255 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHH-HH-------HHHHHHHHhh----ccc
Confidence 87777764 335666777777777777777777776654422 1 1111111 10 1112111111 111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-G-IRKDAVT----YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL 475 (877)
Q Consensus 402 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 475 (877)
++..- - .+.--.|.|+.-++.+... + .++.... ..-.+-++.+.|++.++++.|+.+...+.+.-..
T Consensus 256 ~~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred ccccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 10000 0 0011234455555555431 1 1222111 1223446677788888888888888776543445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--------
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAG-----LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-------- 542 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------- 542 (877)
+-..+.++|...++.++|..+|+.+.... ..++......|.-+|...+++++|..+++++.+. .|
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~ 406 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCC
Confidence 66777888888888888888888876532 1223444567777888888888888888888763 22
Q ss_pred -------CHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhc
Q 002814 543 -------NVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAG 614 (877)
Q Consensus 543 -------~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 614 (877)
|-. .+..++..+.-.|
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~g-------------------------------------------------------- 430 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALN-------------------------------------------------------- 430 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcC--------------------------------------------------------
Confidence 111 1111122222222
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccc
Q 002814 615 QGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN 692 (877)
Q Consensus 615 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 692 (877)
+..+|.+.++++.. ..| |......+.+.+...|...+|.+.++.+...+|.+..+..+..... ..+
T Consensus 431 ----------dl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 431 ----------DLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred ----------CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 55567777777765 445 6667777888888888888888888777777887777666554433 567
Q ss_pred hHHHHHHHHHHHhhcCCC
Q 002814 693 IWVQALSLFDEVKLMDSS 710 (877)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~ 710 (877)
+|++|..+.+++++..|+
T Consensus 499 e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 499 EWHQMELLTDDVISRSPE 516 (822)
T ss_pred hHHHHHHHHHHHHhhCCC
Confidence 888888888888888774
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1e-15 Score=154.21 Aligned_cols=470 Identities=13% Similarity=0.097 Sum_probs=301.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT----VYAFSALI 235 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li 235 (877)
..+...|..+..+.+|+..|+-+++....+. ...+-..+.+.+.+.+.+..|++.|+-++..-+..+ ....+.+.
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~n-ag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPN-AGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCC-CceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3356666677788899999988887765533 334445677888999999999999998877532222 34556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC------------HHHHH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD------------RITFN 303 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~------------~~t~~ 303 (877)
-.|.+.|++++|+..|+.+.+. .||..+--.|+-++..-| +-++..+.|.+|+..-..+| ....+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 6788999999999999998874 478765444444445556 78999999999987533333 22222
Q ss_pred HHHH-----HHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 304 SLLA-----VCSRGG--LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 304 ~ll~-----~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
.-|+ -..+.+ +-++++-.-.+++.--+.||-. . -.+-+++.++.-....+..| .--...
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~d--lei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAID--LEINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhh--hhhhHH
Confidence 2221 111111 1111111111111111112110 0 11222333322211100001 111223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-H-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA-K-LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 454 (877)
.-|.+.|+++.|+++++-+.+..-+.-...-+.|-..+. + -.++..|...-+..+..+ +-+......-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 457899999999999998876643333333333333322 2 235777777766665433 3333333333344456899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002814 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (877)
Q Consensus 455 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (877)
+++|.+.|++.+...-.-....|| +.-.+-..|++++|+++|-++...- ..+......+.+.|.-..+..+|++++-+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998763221122233 3335677899999999998875431 23677777888899999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhc
Q 002814 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAG 614 (877)
Q Consensus 535 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 614 (877)
.... +..|..+++.|.+.|-+.|+-..|.+.+-....++|.+.....++...+...
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt----------------------- 639 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT----------------------- 639 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-----------------------
Confidence 7664 5556779999999999999999999998888888887765555544433332
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Q 002814 615 QGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC-SRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (877)
Q Consensus 615 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~-~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l 685 (877)
+-.++|+..|++..- ++|+.+-|..++..| .+.|++++|+++|......-|++..++.-+
T Consensus 640 ---------qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 640 ---------QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred ---------HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 245568889998765 899999999888665 678999999999998877666666554443
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=1.2e-12 Score=138.64 Aligned_cols=362 Identities=12% Similarity=0.055 Sum_probs=158.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSM----KRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 206 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
..-++.|..++.++.+. ++-+..+|.+-...--.+|+.+....++++- ...|+..+...|-.-...|-..| ..-
T Consensus 419 LetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag-sv~ 496 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG-SVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC-Chh
Confidence 33344444444444332 2223344443333333444444443333322 22333334444444334444444 333
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 282 HVVEIFDDMLRNGVQPD--RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAE 359 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (877)
.+..+....+..|+.-. ..||+.-...|.+.+.++-|+.+|...++. ++.+...|...+..--..|..++-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44444444443333211 123444444444444444455554444443 222334444444444444444444444444
Q ss_pred chhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 360 MPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439 (877)
Q Consensus 360 m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 439 (877)
.... ++-..+.|-.....+-..|+...|..++.+..+.. +-+...|-.-+........++.|..+|.+.... .++.
T Consensus 576 av~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 4433 22233334444444444555555555555544442 223444444444455555555555555544432 2444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
.+|.--+...--.+..++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.|...-
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 44444444444445555555555554443 1111334444445555555555555544433322 122333444444444
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.+.|.+-.|..+|++.+-.+. -|...|...|..-.+.|..+.|...+.++|+..|.+
T Consensus 730 Ek~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 445555555555555544321 133455555555555555555555555555544443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.7e-12 Score=143.21 Aligned_cols=365 Identities=15% Similarity=0.154 Sum_probs=270.9
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
+..+|++++|.+++..++++. |.+...|.+|..+|-..|+.+++...+-.+-...+. |...|..+.....+.|.++
T Consensus 149 lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 444599999999999999997 445668999999999999999999988877766544 7799999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhCCCHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL----LAVCSRGGLWEAARNL 321 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~A~~~ 321 (877)
+|.-+|.+..+.... +...+---...|-+.| +...|..-|.++.....+.|..-+..+ +..+...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999986532 5555555667788899 999999999999987443343334333 4556677777999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHH----------------------H----H
Q 002814 322 FNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY----------------------S----T 374 (877)
Q Consensus 322 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~----------------------~----~ 374 (877)
++.....+ -..+...++.++..|.+...++.|.....++......+|..-| . -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 88887632 2345667889999999999999999888777652222222111 1 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFLG--IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 452 (877)
++-++......+....+........ +.-+...|.-+.++|.+.|++.+|+.+|..+......-+...|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223333444444444444444444 33445678889999999999999999999998876566788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCC
Q 002814 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ--------AGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 453 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~ 524 (877)
|.+++|.+.|+..+... +-+...-..|...|.+.|+.++|.+.+..+.. .+..|+...-....+.+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999998862 33456666777888999999999999988652 2234445555566677888898
Q ss_pred hHHHHHHHHHHHH
Q 002814 525 VESAVSLLDEMTK 537 (877)
Q Consensus 525 ~~~A~~~~~~m~~ 537 (877)
.++-+.+-..|+.
T Consensus 542 ~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 542 REEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 8887766666654
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=3.8e-12 Score=140.49 Aligned_cols=362 Identities=14% Similarity=0.146 Sum_probs=259.5
Q ss_pred HHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHH
Q 002814 132 VTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL 211 (877)
Q Consensus 132 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (877)
+...++..++..-+.+.+...+..+..|..|...|-++|+.++++.++-.+...+ +.+...|..+.....+.|.+++
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhcccHHH
Confidence 3334555555555556677777788899999999999999999999887666664 3444799999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHcCCCCHHHHHHHH
Q 002814 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN----AVIDACGKGGVDFKHVVEIF 287 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~~a~~~~ 287 (877)
|+-.|.++++..+. +....---+..|-+.|+...|.+.|.++......-|..-+. .++..+...+ +-+.|.+.+
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 99999999998544 55555556788999999999999999999864322322222 3345566667 668899998
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHH
Q 002814 288 DDMLRNG-VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI---------------------------DQDIFTYNT 339 (877)
Q Consensus 288 ~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~~~~~~~~~ 339 (877)
+.....+ -..+...++.++..|.+...++.|......+..+.. ..+..+ --
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 8887632 223456688888899999999999988887776222 222222 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL 417 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 417 (877)
++-++.+....+...-+...+.+.. +.-+...|.-+.++|...|++.+|+.+|..+......-+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2233334444444444444444444 33456678888999999999999999999998876666678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCC
Q 002814 418 GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA--------DCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~li~~~~~~g~ 489 (877)
|.+++|.+.|+.++... +.+...-..|...|.+.|+.++|.+.+..+.. .+..|+........+.|.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999988765 55566667788888999999999999988642 2234444444555566777777
Q ss_pred HHHHHHHHHHH
Q 002814 490 YKEAMQIFREF 500 (877)
Q Consensus 490 ~~~A~~~~~~m 500 (877)
.++-+.+-..|
T Consensus 542 ~E~fi~t~~~L 552 (895)
T KOG2076|consen 542 REEFINTASTL 552 (895)
T ss_pred HHHHHHHHHHH
Confidence 76654444333
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=1.9e-11 Score=129.66 Aligned_cols=328 Identities=13% Similarity=0.077 Sum_probs=147.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML----RNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
+...++.|..++++.++. ++-+...|.+-...--.+| +.+...+++++-+ ..|+..+..-|..=...|-+.|..
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 334444555555554442 2224444443333333344 4444444443322 234444444444444444444555
Q ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
--+..+....+..|++.. -.+|+.-...|.+.+.++-|+.+|....+. ++-+...|...+..--..|..++-..+|+
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 445555444444443311 234444444555555555555555544443 12233444444444444455555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 473 (877)
+.... ++-....|.....-+-..|++..|+.++....+.. +.+...|-+-+.....+.+++.|..+|.+.... .|+
T Consensus 575 kav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgT 650 (913)
T KOG0495|consen 575 KAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGT 650 (913)
T ss_pred HHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCc
Confidence 54443 12233333333444444455555555555554443 234444544455555555555555555554442 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSII 551 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li 551 (877)
...|.--+....-.++.++|.+++++.++.- |+ ...|..+...+.+.++.+.|.+.|..=.+. .|+.. .|..|.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLa 726 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLA 726 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHH
Confidence 3333333333333445555555555544431 22 234444444444555555555444443332 23322 444444
Q ss_pred HHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 552 DAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
..--+.|.+-.|..+++++.-.+|.+.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 444444555555555555554444443
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.8e-12 Score=129.26 Aligned_cols=321 Identities=17% Similarity=0.259 Sum_probs=226.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHH--HHhcCChHHH-HHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI--LGRLGKVDLA-KNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+++. ...|....+.-+|++|...+....+ .+-..|++. |....+.--| ++-|-.|.+.|-. +..+|
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~--kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----- 190 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSE--KVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----- 190 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCH--HHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----
Confidence 444443 4567888888899988887754333 333344332 3333333322 3455555555432 33343
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
+.|.+.+ -+|+...+ +..+|..||.++|+-. ..+.|.++|++......+.+..+||.+|.+-.-.
T Consensus 191 ---K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ---ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 4555444 34443332 6678999999999988 8999999999998887888999999998764432
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD-ALNM 391 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~~ 391 (877)
...++..+|......||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 227888999998899999999999999999998775 56778899999999999999999999998877644 4555
Q ss_pred HHHHHHC----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHH
Q 002814 392 FSEMKFL----GI----GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKD---AVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 392 ~~~m~~~----g~----~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~ 456 (877)
+.++... .+ +-|..-|..-++.|.+..+.+.|.++..-+.... +.++ ..-|..+....|+....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554432 22 2345567778888888899998988876654321 1222 233556677778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
.-...|+.|.-+-.-|+..+..-++.+..-.|.++-.-+++.+++..|
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 888888888877677788888888888888888888888888887765
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=7.6e-11 Score=120.63 Aligned_cols=398 Identities=11% Similarity=0.076 Sum_probs=252.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.|..-.+-=..++++++|+.+|++++..+. .+..++...+.+-.++..+..|+.++++++..-+. -...|--.+-+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 343334444456778889999999998763 34558888899999999999999999999886433 23456656656
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 317 (877)
--..|++.-|.++|++-.+ ..|+..+|++.|+.-.+-. +.+.|..+|++.+- +.|++.+|--..+.-.+.|....
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 6678999999999998876 5699999999999988888 89999999999886 46899999888888889999999
Q ss_pred HHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCCH---HHHHH
Q 002814 318 ARNLFNEMVHR-GI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN--VVTYSTMIDGYAKAGRL---DDALN 390 (877)
Q Consensus 318 A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~---~~A~~ 390 (877)
|..+|+..++. |- .-+...+++....-.++..++.|.-+|+-..+. ++.+ ...|......--+-|+. ++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999988764 20 112334555555555677788888888766654 2212 23344333333334443 23221
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH----HH----HHHHcCCH
Q 002814 391 -----MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA--VTYNAL----LG----GYGKQGKY 455 (877)
Q Consensus 391 -----~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~l----i~----~~~~~g~~ 455 (877)
-++.+...+ +-|-.+|--.++.-...|+.+...++|++.+..- +|-. ..|.-. |+ .-....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 122333332 4455666666666666677777777777776542 3311 011100 11 11234566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYS----KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (877)
+.+.++|+..++. ++-...|+.-+--+|+ ++.++..|.+++...+ |.-|-..+|...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666666653 3444455554444443 3456666666666554 3345666666666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHh
Q 002814 532 LDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (877)
Q Consensus 532 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l 571 (877)
|++.++.+. -|..+|......-...|+.+.|..+++-++
T Consensus 460 YEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 460 YEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 666666432 144466655555555566555555444443
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=4.3e-12 Score=127.97 Aligned_cols=363 Identities=15% Similarity=0.195 Sum_probs=163.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
++..||.++|+.-..+.|+++|.+........+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++.+..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 444445555554444555555544444333344444444444322111 1344444444444455555555555444
Q ss_pred cCCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHc--C------CCCCHHHHHHHH
Q 002814 275 KGGVDFKH----VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA-ARNLFNEMVHR--G------IDQDIFTYNTLL 341 (877)
Q Consensus 275 ~~g~~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~m~~~--g------~~~~~~~~~~li 341 (877)
+.| +++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++... | .+.|...|..-+
T Consensus 285 kfg-~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 285 KFG-KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred Hhc-chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 444 3332 23344444444555555444444444444443322 22222222211 0 111233334444
Q ss_pred HHHHHcCCHHHHHHHHHHchhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 342 DAICKGAQMDLAFEIMAEMPAKN----ISPN---VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g----~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..|.+..+.+-|.++..-+.... +.|+ .+-|..+....|+....+.-+..|+.|.-.-.-|+..+...++.+.
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 44444444444444433322110 1111 1223444444444444444455555444443444444444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------------------C-HHHHHHHHHHHHHCCCCCC
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG--------------------K-YDEVRRMFEQMKADCVSPN 473 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--------------------~-~~~A~~~~~~m~~~g~~p~ 473 (877)
.-.|+++-.-+++..++..|..-+...-.-++..+++.. + .+.....-.+|.+..+ .
T Consensus 444 ~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~ 521 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--P 521 (625)
T ss_pred hhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--C
Confidence 444444444444444443332211111111111111111 1 1112222234444433 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYS---ALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYN 548 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 548 (877)
....+..+..+.+.|..++|.++|..+.+++- .|-....| -+++.-.+.+....|..+++-|...+.. ..+ .-+
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~-~~E~La~ 600 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP-ICEGLAQ 600 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch-hhhHHHH
Confidence 45566666777888888888888888855432 23333444 5555666778888888888888765432 333 344
Q ss_pred HHHHHHhhcCChhhhHH
Q 002814 549 SIIDAFGRSATTECTVD 565 (877)
Q Consensus 549 ~li~~~~~~g~~~~a~~ 565 (877)
.+...|.-.....+++.
T Consensus 601 RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 601 RIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHhcCcCHHHHHHHh
Confidence 55555544443334433
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.9e-11 Score=124.97 Aligned_cols=361 Identities=12% Similarity=0.069 Sum_probs=259.6
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
..+...+......+.+.|..+.|+..|...+.. .+..-.+|..|... .-+.+.+..+...+.. +-....=-.+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~~~l~~---~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILVVGLPS---DMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHHhcCcc---cchHHHHHHH
Confidence 445566666777788899999999999888765 22334444444333 2233332222211111 0111222234
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHc
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI--DQDIFTYNTLLDAICKG 347 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~ 347 (877)
..++.... ..+++++-.+.....|+.-....-+....+.....++++|+.+|+++.+... -.|..+|+.++-.-..+
T Consensus 234 ~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45566666 6788888888888888876666666666777788999999999999998742 12577787776544333
Q ss_pred CCHH-HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 348 AQMD-LAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (877)
Q Consensus 348 g~~~-~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 426 (877)
.++. -|..++. +-+ --..|...+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|++.
T Consensus 313 skLs~LA~~v~~-idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH-hcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2222 2333332 111 134677788888999999999999999998875 44567889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002814 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (877)
Q Consensus 427 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 506 (877)
++..++.. +.|-..|..|.++|.-.+...=|+-.|++..+. .+-|...|.+|.++|.+.++.++|++.|......| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999876 779999999999999999999999999999876 34578999999999999999999999999999876 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHhhcCChhhhHHHH
Q 002814 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTK----EGIRPNVV--TYNSIIDAFGRSATTECTVDDV 567 (877)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~ 567 (877)
.+...+..|...|-+.++.++|...|++-++ .|..-+.. ...-|..-+.+.+++++|-...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3668999999999999999999998888765 24333322 2223555667778887775443
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=2.2e-12 Score=130.60 Aligned_cols=384 Identities=16% Similarity=0.167 Sum_probs=199.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCC--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
...+.+.+++.+|+++|.-++.+-+.... ...+.+.+...+.+.|++++|+.-|+...+. .|+..+-..|+-++.-
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 44456778899999999988876533222 2345666667788999999999999999876 4675554445555666
Q ss_pred cCCHHHHHHHHHHHHhCCC------------CCCHHHHHHHHH-----HHHcCC-CCHHHHHHHHHHHHHCCCCCCHH--
Q 002814 241 SGYCQEAISVFNSMKRYNL------------KPNLVTYNAVID-----ACGKGG-VDFKHVVEIFDDMLRNGVQPDRI-- 300 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~------------~p~~~~~~~ll~-----~~~~~g-~~~~~a~~~~~~m~~~g~~p~~~-- 300 (877)
-|+-++..+.|.+|..... .|+....|..|. ..-+.. .+.++++-.-.+++.--+.|+-.
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence 8899999999999975432 233333333332 222211 01222222222222221222210
Q ss_pred -----------HHH--------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 002814 301 -----------TFN--------SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC---------------- 345 (877)
Q Consensus 301 -----------t~~--------~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---------------- 345 (877)
.+. .-..-|.+.|+++.|.+++.-+.+..-..-...-|.|-..+.
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 000 112346789999999999887766532211222222222211
Q ss_pred --------------------HcCCHHHHHHHHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 346 --------------------KGAQMDLAFEIMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLGIGL 402 (877)
Q Consensus 346 --------------------~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p 402 (877)
..|++++|.+.|++.... |...-.+| .-.+-..|++++|++.|-++... +.-
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~n 556 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLN 556 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHh
Confidence 134555555555555443 22211111 11234455555555555544322 122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
+..+...+.+.|....+..+|++++.+.... ++.|+.+...|.+.|-+.|+-..|.+.+-+-... ++-|..|..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 3344444455555555555555555444322 2445555555555555555555555554443332 3445555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 002814 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (877)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 558 (877)
.|....-+++|+.+|++..- +.|+..-|..||..|. +.|++.+|+++|++.... +.-|...+..|+..|...|
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 55555555555555555433 2455555555554333 355555555555555432 4444455555555555444
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=1.7e-09 Score=115.05 Aligned_cols=535 Identities=13% Similarity=0.167 Sum_probs=329.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
|..|..-+..+..+|+...-+..|++++..-+.. ....+|...+......+-.+.+..+|++.++. ++..-+-.|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvt-qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVT-QHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchH-hhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 5567777788888999999999999998764332 22357888888888889999999999999885 445577888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCCCCH--HHHHH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYN------LKPNLVTYNAVIDACGKGGVDFK---HVVEIFDDMLRNGVQPDR--ITFNS 304 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~---~a~~~~~~m~~~g~~p~~--~t~~~ 304 (877)
..+++.+++++|.+.+....... .+-+...|+-+-+...+.- +.- ....+++.++.. -+|. ..|++
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p-~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP-DKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc-chhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 99999999999999998876431 2335556777766666543 222 223344444432 2343 56899
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHchh
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ----------------------MDLAFEIMAEMPA 362 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~ 362 (877)
|.+-|.+.|.++.|..+|++.+..- .++.-|+.+.+.|++-.. ++-.+.-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999988752 234445555555543211 1222233333322
Q ss_pred CC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 002814 363 KN-----------ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------RVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 363 ~g-----------~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~~~~~li~~~~~~g~~~~A~~ 425 (877)
.+ -+-++.+|..-+.. ..|+..+-...|.+.... +.|. ...|..+.+.|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 21 11133344433332 246677777778777654 2222 2457888888999999999999
Q ss_pred HHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHH
Q 002814 426 VCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-----------------PNLLTYSTLIDVYS 485 (877)
Q Consensus 426 ~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------------p~~~t~~~li~~~~ 485 (877)
+|++..+..++-- ..+|.....+-.+..+++.|+++.+.....--. -+...|+..++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9998887654322 455666667777788888888888776532111 12234555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh---cCChh
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGR---SATTE 561 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~---~g~~~ 561 (877)
..|-++....+|+++++..+. ++.........+-...-++++.++|++=+..=-.|+.. .|++.+.-+.+ .-+++
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 667778888888888776553 22222222223445556788888887766542345554 67765554422 23577
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCC
Q 002814 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641 (877)
Q Consensus 562 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~ 641 (877)
.|..+++++|+.-|.. ....+.-+|.++..+. | ....|+.++++... ++
T Consensus 568 raRdLFEqaL~~Cpp~-------------------~aKtiyLlYA~lEEe~-G----------Lar~amsiyerat~-~v 616 (835)
T KOG2047|consen 568 RARDLFEQALDGCPPE-------------------HAKTIYLLYAKLEEEH-G----------LARHAMSIYERATS-AV 616 (835)
T ss_pred HHHHHHHHHHhcCCHH-------------------HHHHHHHHHHHHHHHh-h----------HHHHHHHHHHHHHh-cC
Confidence 8888888888754421 1122333444432221 2 33457778887543 45
Q ss_pred CCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH-h--hccccchHHHHHHHHHHHhh-cCCCcchhH
Q 002814 642 KPNVV--TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-L--MGYRDNIWVQALSLFDEVKL-MDSSTASAF 715 (877)
Q Consensus 642 ~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l-~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~ 715 (877)
++... .|+..|.--...=-+..-+.+|+++++.=|+.......+ + +....|..++|..++.-.-+ .+|..+..+
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 55443 366555433222223344566666665444332221111 1 11256777888888777655 567777888
Q ss_pred HHHHHHHHHhcCchhhHHHH
Q 002814 716 YNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~ 735 (877)
|++.=+.-.+.|+-+--+++
T Consensus 697 W~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 88888887888885443433
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.8e-12 Score=128.12 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=133.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (877)
.-.|+.-.|..-|+..++....++ ..|.-+..+|....+.++..+.|++..+.+.. |..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 335566666666666655432211 12555555566666666666666666554432 4445555555555555666666
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHH
Q 002814 530 SLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQL 608 (877)
Q Consensus 530 ~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (877)
.-|++.+.. .|+. ..|..+.-+..+.++++++...++++.+.+|+
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-------------------------------- 460 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-------------------------------- 460 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------------------------
Confidence 666666552 3332 24444444444444444444444444333332
Q ss_pred HHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH---
Q 002814 609 VAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL--- 685 (877)
Q Consensus 609 ~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l--- 685 (877)
-..+|+....++...++++.|.+.|+.++++.|..+++..+.
T Consensus 461 -----------------------------------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 461 -----------------------------------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred -----------------------------------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 223455555566666778888888888777766633332221
Q ss_pred ----hhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 686 ----LMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 686 ----~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.. -.+++.+|+.++++++++|| ...-.|-+|+.+....|+.++|.++|+++....
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111 35788999999999999999 567789999999999999999999999876543
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=9.8e-10 Score=112.66 Aligned_cols=354 Identities=12% Similarity=0.106 Sum_probs=192.6
Q ss_pred HHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 176 IQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (877)
++-|+..++.+ -.+...+......-..++++..|+.+|++++.... .+...|.-.+.+-.++.++..|..++++..
T Consensus 59 RkefEd~irrn---R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAv 134 (677)
T KOG1915|consen 59 RKEFEDQIRRN---RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAV 134 (677)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 56676666664 22334455555555667778888888888887653 367788888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 002814 256 RYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF 335 (877)
Q Consensus 256 ~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 335 (877)
..=+..|.. |.-.+..--..| +...|.++|++-.. +.|+...|.+.|+.-.+...++.|..+|++.+- +.|++.
T Consensus 135 t~lPRVdql-WyKY~ymEE~Lg-Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~ 208 (677)
T KOG1915|consen 135 TILPRVDQL-WYKYIYMEEMLG-NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVS 208 (677)
T ss_pred HhcchHHHH-HHHHHHHHHHhc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHH
Confidence 632222222 222233333445 67777777777765 477777777777777777777777777777765 347777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
+|.-....-.+.|++..|..+|+...+. +. |...- ...++++...-.
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~-~~-~d~~~-------------------------------e~lfvaFA~fEe 255 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEF-LG-DDEEA-------------------------------EILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH-hh-hHHHH-------------------------------HHHHHHHHHHHH
Confidence 7777777777777777777777765542 00 11111 112222222233
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCH---HHHHH-----HHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKD--AVTYNALLGGYGKQGKY---DEVRR-----MFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
++..++.|..+|+-.++.- +.+ ...|..+...--+-|+. ++++- -++.+++. -+-|..+|--.+..-.
T Consensus 256 ~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHH
Confidence 3344455555554444331 212 22232232222222332 22211 12223332 1335555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-H---HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADV--VLYSALI----D-A---LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF- 554 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li----~-~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~- 554 (877)
..|+.+...++|++.+.. ++|-. ..|.-.| + + -....+++.+.++|+..++. ++-..+||..+--.|
T Consensus 334 ~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA 411 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYA 411 (677)
T ss_pred hcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHH
Confidence 556666666666666543 22211 1111111 1 1 12356677777777777763 333344655444433
Q ss_pred ---hhcCChhhhHHHHHHHhhhhhh
Q 002814 555 ---GRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 555 ---~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.++-++..|.+++..+++..|.
T Consensus 412 ~feIRq~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 412 QFEIRQLNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHcccHHHHHHHHHHhccCCc
Confidence 3445555555555555544443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=2.8e-11 Score=132.74 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY--NTLLDAICKGAQMDLAFEI 356 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~ 356 (877)
+++.|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+...+ ......+...|+++.|.+.
T Consensus 99 d~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666555544332111 1112222223335566666666666666553 2332211 1224555666666666666
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLVCKE 429 (877)
Q Consensus 357 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~~ 429 (877)
++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 6666555422 4555666666666666666666666666655433211 1222233333333444555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 430 MESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV 509 (877)
Q Consensus 430 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 509 (877)
+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+... -|.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCH
Confidence 4322 1456677777777778888888888888777764 3344211 23333445777788888777776642 356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
..+.++...|.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.+.+.+++..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777788888888888888888876 3677777777888888888888887777776653
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7.3e-11 Score=121.49 Aligned_cols=399 Identities=15% Similarity=0.083 Sum_probs=269.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 239 (877)
....+.+.++|.+++|++.|.+++... ++.+..|.....+|...|++++..+--.++++..+. -+.++.--.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 345667889999999999999999985 443678999999999999999999999988886422 3567777777888
Q ss_pred hcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHH------
Q 002814 240 RSGYCQEAISVFNSM-KRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG--VQPDRITFNSLLAVCS------ 310 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~------ 310 (877)
..|++++|+.-..-. +..|+. |..+--.+=+.+-+.+ ..++.+-+. ..+ +-|......+....+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a--~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA--MKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH--HHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccccc
Confidence 888888876433322 122222 2222111112222211 112222211 111 2233322222222211
Q ss_pred -----------------h--CC---CHHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 002814 311 -----------------R--GG---LWEAARNLFNEMVHR---GIDQD---------IFTYNTLLDAICKGAQMDLAFEI 356 (877)
Q Consensus 311 -----------------~--~g---~~~~A~~~~~~m~~~---g~~~~---------~~~~~~li~~~~~~g~~~~A~~~ 356 (877)
. .+ .+..|...+.+-... ...-+ ..+...-...+.-.|+.-.|.+-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 01 223333322222111 00111 11122222234457888899999
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436 (877)
Q Consensus 357 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 436 (877)
|+..+..... +...|--+..+|....+-++..+.|.+....+ +-|..+|..-..++.-.+++++|..=|++.+... +
T Consensus 349 ~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 349 FDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 9998876443 23338788889999999999999999998876 5577788888888888999999999999999876 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHH
Q 002814 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-----ADVVL 511 (877)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~ 511 (877)
-+...|..+..+..+.+++++++..|++.+++ ++.-...|+.....+...+++++|.+.|+..++.... .+...
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 67788888888888999999999999999987 5667899999999999999999999999998874211 12222
Q ss_pred H--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 512 Y--SALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 512 ~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
+ -.++-.- -.+++..|+.++++.++. .|... .|.+|...-.+.|++++|+++++++..+..
T Consensus 505 lV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 505 LVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 1222221 248899999999999984 55554 899999999999999999999988776543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1e-09 Score=112.58 Aligned_cols=332 Identities=12% Similarity=0.051 Sum_probs=238.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHH--
Q 002814 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI-- 300 (877)
Q Consensus 223 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~-- 300 (877)
+...|...+-.....+.+.|....|++.|......- +-+-.+|-.|...+. +.+.+ ..... |...|..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit----~~e~~----~~l~~-~l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT----DIEIL----SILVV-GLPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc----hHHHH----HHHHh-cCcccchHH
Confidence 444566666666667788899999999999887531 113344444433332 22222 22222 2222221
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCC--CCHHHHHHHHHH
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PNVVTYSTMIDG 378 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~~~~~li~~ 378 (877)
.--.+..++....+.+++.+-.+.....|++.+...-+....+.....++|+|+.+|+++.+...- -|..+|+.++-.
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 122345667777788999998999999888877776666677777888999999999999876321 266777776643
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
+..+-. +..+-+-...--+--..|...+.+.|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|
T Consensus 309 --~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 --KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred --HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 332221 1122211111013345678888889999999999999999999887 66788899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
++-++..++- .+.|-..|-.|.++|.-.+...-|+-.|++..+-. +.|...|.+|..+|.+.++.++|++.|......
T Consensus 384 i~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999887 35588899999999999999999999999998764 458899999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 539 GIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 539 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
|-. +...+..|.+.|-+.++.++|.+.+++-++
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 532 557888888899888888888776655443
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=9.6e-11 Score=128.59 Aligned_cols=220 Identities=14% Similarity=0.087 Sum_probs=96.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCH-------HHHHHHHHHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV-------VTYSTMIDGYA 380 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~~~~~li~~~~ 380 (877)
.+...|+++.|.+.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444432 123344444444444444444444444444443322111 11222222222
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
...+.+...++++.+.+. .+.+......+...+...|+.++|..++++..+. .+|.... ++.+....++.+++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 233333333333333221 1234444455555555555555555555555442 2333211 1222223355555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
..++..+. .+-|...+..+...|.+.+++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|..++++-.
T Consensus 316 ~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 316 VLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555444 2223444455555555555555555555555543 3555555555555555555555555555543
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=3.5e-11 Score=132.78 Aligned_cols=292 Identities=13% Similarity=0.044 Sum_probs=176.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHH
Q 002814 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHV 283 (877)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a 283 (877)
...|+++.|++.+.+..+.... ....+-....++.+.|+++.|.+.|.+..+....++....-.....+...| +++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-ELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC-CHHHH
Confidence 4567777777777776664322 233334445666677777777777777665332222223333355566667 77777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHH
Q 002814 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYN-TLLDAI---CKGAQMDLAFEIMAE 359 (877)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~ 359 (877)
.+.++.+.+.... +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777766433 5556667777777777777777777777776543 222221 111111 222222222333333
Q ss_pred chhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 360 MPAKN---ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS---YNTVLSIYAKLGRFEEALLVCKEMESS 433 (877)
Q Consensus 360 m~~~g---~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (877)
+.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 33221 1126677777778888888888888888887776 333331 111112223346777778888777665
Q ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 434 GIRKDA--VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 434 g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
. +.|. ....++...+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 4445 566677888888888888888888533333467777788888888888888888888887543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=7.6e-11 Score=130.12 Aligned_cols=291 Identities=10% Similarity=0.021 Sum_probs=211.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 317 (877)
...|+++.|.+.+.+..+.. |+ ...|-....+..+.| +.+.|.+++.++.+....++..........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRG-DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 36799999999998887753 44 333444456677778 999999999998775333222344445778888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHH-HHHHHHH---HHcCCHHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY-STMIDGY---AKAGRLDDALNMFS 393 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~li~~~---~~~g~~~~A~~~~~ 393 (877)
|...++.+.+.. +-+..++..+...|.+.|++++|.+++..+.+.++. +...+ .....++ ...+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999875 346778889999999999999999999999988654 33333 2222222 33344444455666
Q ss_pred HHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 394 EMKFLGI---GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT---YNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 394 ~m~~~g~---~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
.+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... .....-.....++.+.+.+.+++..+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 6655421 1377888889999999999999999999998864 33321 11222223345788889999988877
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 468 DCVSPNL--LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 468 ~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
. .+-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 23344 566788999999999999999999543333468888888999999999999999999998654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=9.6e-12 Score=133.38 Aligned_cols=282 Identities=17% Similarity=0.131 Sum_probs=196.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCCHHHHHH
Q 002814 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL--KPNLVTYNAVIDACGKGGVDFKHVVE 285 (877)
Q Consensus 208 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~~a~~ 285 (877)
+..+|...|+..... ...+..+...+.++|...+++++|..+|+.+.+... .-+...|.+.+--+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 456788888885544 333456777788888888888888888888876431 1156677777665432 12222
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 286 IF-DDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 286 ~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
++ +.++.. -+-...+|.++.++|.-+++.+.|++.|++.++.. | ..++|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 223332 12356788888888888888888888888888753 3 6778888888888888888888888877654
Q ss_pred CCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 364 NISPNVVTYST---MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV 440 (877)
Q Consensus 364 g~~pd~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 440 (877)
|...||+ +.-.|.+.++++.|.-.|++..+.+ +-+.+....+...+.+.|+.|+|+.+|++....+ +.|+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCch
Confidence 4444444 5667888888888888888877664 5566677777777888888888888888887766 45555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 505 (877)
.-...+..+...+++++|+..++++++. ++-+...+..+...|-+.|+.+.|+.-|.-+.+...
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5555666677778888888888887775 333456667777777777777777777777666543
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.1e-13 Score=145.06 Aligned_cols=258 Identities=17% Similarity=0.155 Sum_probs=61.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 002814 200 ISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (877)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 278 (877)
...+.+.|++++|++++++..... ...+...|..+.......++++.|++.++++...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc-
Confidence 444444455555555553322221 1223344444444444445555555555555443222 23333333333 3334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (877)
++++|.+++++..+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555444444332 1233334444444445555555555554443321 1234444444444555555555555555
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 437 (877)
++..+.... |....+.++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|+..|++..+.. +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 544443211 34444444445555555555444444443332 2233344444555555555555555555544433 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
|..+...+.+++.+.|+.++|.++..+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4444445555555555555555544443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=6.4e-12 Score=134.73 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=223.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAICKGAQMD-LAFE 355 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~-~A~~ 355 (877)
+..+|+..|++.... +.-+.++...+.++|...+++++|+++|+.+.+.. ...+..+|.+.+.-+-+.=... -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999995444 33344677788899999999999999999998763 1236778888776554322211 2333
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 435 (877)
+.+.+. -...+|-++.++|.-+++++.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+..+...
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 333333 267899999999999999999999999998774 3367899999999999999999999999988543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515 (877)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 515 (877)
+.+-..|.-|...|.|.++++.|.-.|+++.+.+ +-+.+....+...+.+.|+.++|+++|+++.....+ |+..---.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2334444556778999999999999999999864 336677777888899999999999999999887644 55555566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 516 IDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
+..+...+++++|+..|+++++ +.|+. ..|..+...|-+.|+.+.|+.-+.-++.+.|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7778889999999999999998 45665 488888899999999999988777777766643
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=2e-13 Score=143.01 Aligned_cols=259 Identities=19% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 384 (877)
...+.+.|++++|.+++++..... ...|...|..+...+...++++.|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 445555555666665554333222 1223444444445555555566666666655554322 33344444444 45566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-IRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (877)
+++|.+++.+..+. .++...+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666655554433 2344445555555666666666666666554321 23455555666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 002814 464 QMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (877)
Q Consensus 464 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (877)
+.++.. +-|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+.+|++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 666541 2235555666666666666666666665555432 2344455666666666666666666666665531 224
Q ss_pred HHHHHHHHHHHhhcCChhhhHHHHHHHh
Q 002814 544 VVTYNSIIDAFGRSATTECTVDDVERDL 571 (877)
Q Consensus 544 ~~~~~~li~~~~~~g~~~~a~~~~~~~l 571 (877)
..+...+.+++.+.|+.++|.++..+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4455566666666666666666555544
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.3e-10 Score=116.59 Aligned_cols=506 Identities=12% Similarity=0.039 Sum_probs=304.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
+...+..+++-+..+.++..|.-+-+++...... |. -.--++.++.-.|++..|..+...-.-. ..|..+....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d-p~---d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTND-PA---DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC-hH---HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 3556777777777888888888877777766522 22 2344677777778888887776654322 2367777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
...+.+..++++|..++.+... .-+...|..-=.+.. - ..+.+. ++.. .......+-.-...|....+
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~~--l-~~n~~~----~~~~--~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDAANT--L-ELNSAG----EDLM--INLESSICYLRGKVYVALDN 156 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhhhce--e-ccCccc----cccc--ccchhceeeeeeehhhhhcc
Confidence 7888888889998888874311 111111111000000 0 111111 0000 01111111112234555666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHchhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-AQMDLAFEIMAEMPAK-NISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 315 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
.++|+..|.+.+.. |+..+.++...-... =..++-.++|+.+.-. -..-++.....+.....-...-++....-
T Consensus 157 ~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~ 232 (611)
T KOG1173|consen 157 REEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRN 232 (611)
T ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccC
Confidence 77777777777664 454444443322111 0111223333321100 00112222222222221111111111111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
++..-.+..-+........+-|...+++.+..++++.+.+.. +++...+-.-|..+...|+..+-..+=.++.+. .+-
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCC
Confidence 111112334566666777778888899999999999988776 677777777788888888888877777788776 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
...+|-++..-|...|+..+|.+.|.+....+. .=...|-.+...|.-.|..|+|+..|..+.+. +.-...-+--+.-
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGM 388 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHH
Confidence 678899999888888999999999988876431 13468888899999999999999988887664 1112222333444
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
-|.+.+.++.|.+.+.+++...|..+-+..-++...+. .+.+.+|+.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~--------------------------------~~~y~~A~~~ 436 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT--------------------------------YEEYPEALKY 436 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh--------------------------------HhhhHHHHHH
Confidence 57888899999999999999888776332222111110 1256677777
Q ss_pred HHHHHHC--CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHh
Q 002814 633 FQKMHKL--KIKP----NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (877)
Q Consensus 633 ~~~m~~~--g~~P----d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~ 705 (877)
|+..+.. .+.+ =..+++.|+.+|.+.+.+++|+..|++.+...|++..+-..+...+ ..|+++.|++.|.+++
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 7776521 1111 2335888999999999999999999999888887776655544333 5788899999999998
Q ss_pred hcCCCcchhHHHHH
Q 002814 706 LMDSSTASAFYNAL 719 (877)
Q Consensus 706 ~~~~~~~~~~~~~l 719 (877)
.+.| .|..+-..|
T Consensus 517 ~l~p-~n~~~~~lL 529 (611)
T KOG1173|consen 517 ALKP-DNIFISELL 529 (611)
T ss_pred hcCC-ccHHHHHHH
Confidence 8888 444433333
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=2.2e-10 Score=112.17 Aligned_cols=288 Identities=13% Similarity=0.123 Sum_probs=196.6
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN---TVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~ 245 (877)
..+.++|++.|..+.+.. +.+..+.-+|.+.|.+.|..|.|+++++.+.++---+ -..+...|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 457889999999998864 5556677889999999999999999999988751110 1345566788899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
.|.++|..+...+.. -..+...|+..|-... ++++|+++-+++.+.+-++.. ..|.-|...+....+++.|+.+
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999998874422 4567778888898888 999999999988887655443 2355566666667788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 401 (877)
+.+..+.+. ..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 888877642 23444555667778888888888888888877443334566777778888888888888888777653
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 002814 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK---QGKYDEVRRMFEQMK 466 (877)
Q Consensus 402 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 466 (877)
+....-..+........-.+.|...+.+-+.. .|+...+..+|+.-.. .|...+-..+++.|.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 23333333333333333344454444443333 5777777777765432 233444444555554
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.3e-09 Score=107.13 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=150.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS-YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 446 (877)
|+.....+.+.|...|+.++|+..|++.... .|+.++ ...-.-.+.+.|+++....+...+.... .-...-|-.-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4444555555555555555555555554433 222211 1111122345555555555555554322 11222333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
......++++.|+.+-++.++.. +-+...|-.-...+...|+.++|.--|+..+... +.+...|..|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 44445566666666666665542 2234444444455566666666666666665532 235666777777777777766
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-hcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHH
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSII-DAFG-RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (877)
||.-+-+..... +.-+..+.+.+. ..|. ....-|+|..++++.+...|.-. ...+.+.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~-----------------~AV~~~AEL 447 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT-----------------PAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH-----------------HHHHHHHHH
Confidence 666555444332 222334444331 2222 22223567777777776655421 001111111
Q ss_pred HHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchh
Q 002814 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680 (877)
Q Consensus 605 ~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~ 680 (877)
.. ..|.+.+++.++++-+. ..||....+.|++.+...+.+++|.+.|..++.+||++-.
T Consensus 448 ~~---------------~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 448 CQ---------------VEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HH---------------hhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 11 01255667888888776 6799999999999999999999999999999999998743
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=5e-10 Score=109.74 Aligned_cols=278 Identities=14% Similarity=0.132 Sum_probs=183.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 002814 266 YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD------IFTYNT 339 (877)
Q Consensus 266 ~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ 339 (877)
|..-++.+... +.++|.++|-+|.+.... +..+-.+|.+.|.+.|..|.|+++++.+.+. || ......
T Consensus 39 Yv~GlNfLLs~--Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNFLLSN--QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHHHhhc--CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 33334443333 467788888887764221 3344556777788888888888888777765 33 234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV----SYNTVLSIYA 415 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----~~~~li~~~~ 415 (877)
|..-|...|-+|.|+++|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+-.+..+ -|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 666777788888888888877765322 34556677888888888888888888777665343322 3455556666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 495 (877)
...+++.|..++.+..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6677888888888887765 445556566777888888888888888888877433334566777888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 002814 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 496 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 555 (877)
.+..+.+... ....-..+...-....-.+.|...+.+-+.. .|+...+..|++.-.
T Consensus 271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 8888877542 3333333443333333445555555544442 588888888887653
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=2e-08 Score=109.80 Aligned_cols=485 Identities=14% Similarity=0.097 Sum_probs=242.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
+.+.+..++++.-+......+..-+..++-.+..++ ...+ +.+++ ++-..+..-+-|....+.+.+..
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~-~~Ee~--~Lllli~es~i~Re~~~d~ilsl------ 307 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKS-GQEEV--ILLLLIEESLIPRENIEDAILSL------ 307 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCC-cHHHH--HHHHHHHhhccccccHHHHHHHH------
Confidence 445566677777777777666655666665554442 3334 44444 33333332233332222222111
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (877)
Q Consensus 315 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (877)
.-.+.++....+..|...|..|.-+..++|+++.+.+.|++....-+. ....|+.+...|...|.-..|..++++
T Consensus 308 ----m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 308 ----MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred ----HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 111222322234456777777777788888888888888876654222 556677778888888888888888776
Q ss_pred HHHCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHH
Q 002814 395 MKFLGIGLDRVSYNTVL-SIYA-KLGRFEEALLVCKEMESS--GI--RKDAVTYNALLGGYGKQ-----------GKYDE 457 (877)
Q Consensus 395 m~~~g~~pd~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~ 457 (877)
-....-.|+..+-..++ ..|. +.+.+++++..-.+++.. +. ......|-.+.-+|... ....+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 55443234333332333 3333 446667766666655541 11 12344455554444322 12445
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 458 VRRMFEQMKADC-VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 458 A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
+.+.+++..+.+ -.|++..|-++ -|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...
T Consensus 463 slqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 667777776654 33444444333 355667788888888888776555677788877777777888888888877766
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhc-----cchhHHHHHHHHHHH-
Q 002814 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAG-----RTDNQIIKVFGQLVA- 610 (877)
Q Consensus 537 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~- 610 (877)
+. ..-|......-+..-...++.++++..+...+...-....+...+..+.......+ ......++...++..
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 43 11122211112222223455555555554444433211111100000000000000 000000011110000
Q ss_pred -----HHhcC----Cc------ch---h-------------hhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcC
Q 002814 611 -----EKAGQ----GK------KE---N-------------RCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRC 658 (877)
Q Consensus 611 -----~~~g~----~~------~~---~-------------~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~ 658 (877)
+..|- .. .+ + ...+..++|.-.+.+... +.| ....|.-.+..+-..
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 00000 00 00 0 000111223223333222 223 223344444555556
Q ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccc--hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHH
Q 002814 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN--IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (877)
|.++||.+.|..+...||++..++..+...+ +.| .+.++..+...+++.|| .|..+|..|+.++-+.|+.+.|.+.
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHH
Confidence 6667777777777667776666655553222 223 23334446667777777 6666677777777777777777766
Q ss_pred HHHhhhh
Q 002814 736 VLEGKRR 742 (877)
Q Consensus 736 ~~~~~~~ 742 (877)
|..+.+.
T Consensus 777 f~aa~qL 783 (799)
T KOG4162|consen 777 FQAALQL 783 (799)
T ss_pred HHHHHhh
Confidence 6665544
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=9.5e-08 Score=102.07 Aligned_cols=525 Identities=12% Similarity=0.119 Sum_probs=330.3
Q ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002814 173 SKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVF 251 (877)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 251 (877)
+..-..|++.+..-. .-+.+|...+..+.++|++...+..|+.++..- +.....+|...+......|-.+-++.+|
T Consensus 85 ~~vn~c~er~lv~mH---kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMH---KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHHHHHHHh---cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 333444555444221 123578888889999999999999999997642 2223468888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHH---HHHHH
Q 002814 252 NSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG------VQPDRITFNSLLAVCSRGGLWEA---ARNLF 322 (877)
Q Consensus 252 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~---A~~~~ 322 (877)
++..+. +...-+-.|..+++.+ ++++|.+.+...+... .+.+-..|..+-+...+.-+.-. ...++
T Consensus 162 rRYLk~----~P~~~eeyie~L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 162 RRYLKV----APEAREEYIEYLAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHhc----CHHHHHHHHHHHHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999883 3334667788888888 8999999998876431 23344556666666555443332 23333
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC----------------
Q 002814 323 NEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR---------------- 384 (877)
Q Consensus 323 ~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~---------------- 384 (877)
..++.+ -+| ...|.+|.+-|.+.|.+++|..+|++.... ...+.-|+.+.+.|..-..
T Consensus 237 R~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 237 RGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred Hhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 344332 234 467999999999999999999999987764 2244556666666654211
Q ss_pred ------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHHH
Q 002814 385 ------LDDALNMFSEMKFLG-----------IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK------DAVT 441 (877)
Q Consensus 385 ------~~~A~~~~~~m~~~g-----------~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~~~~ 441 (877)
++-.+.-|+.+.+.+ -+-+...|..-+. +..|+..+-...|.+.++.- .| -...
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~L 389 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTL 389 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhH
Confidence 222223333333221 0112222322222 23466777778888876541 22 2356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG-------------- 504 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------- 504 (877)
|..+...|-..|+++.|..+|++..+...+-= ..+|..-..+=.+..+++.|+++.+.....-
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 88899999999999999999999887532211 3455555566667788999999887765321
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhh
Q 002814 505 ---LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLD 581 (877)
Q Consensus 505 ---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~ 581 (877)
+..+...|..+++..-..|-++....+|+++++..+. +..+.....-.+-.+.-++++.+.+++.+.+++-+...
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~- 547 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY- 547 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH-
Confidence 0113446777777777889999999999999987654 22222222223455667899999999999887654211
Q ss_pred hhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HcCC
Q 002814 582 AMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC--SRCN 659 (877)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~--~~~g 659 (877)
..|+..+.-|-+ ..|- ...+.|..+|++.++ |+.|...-+..|+.|- -..|
T Consensus 548 --------------diW~tYLtkfi~----rygg--------~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 548 --------------DIWNTYLTKFIK----RYGG--------TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred --------------HHHHHHHHHHHH----HhcC--------CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh
Confidence 234443333321 1111 156779999999998 8888776555565553 2558
Q ss_pred CHHHHHHHHHHHHh-cCCcchhHHHHHhhccccc--hHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHhcCchhhHHHH
Q 002814 660 SFEDASMLLEELRL-FDNQVYGVAHGLLMGYRDN--IWVQALSLFDEVKLMDSST-ASAFYNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 660 ~~~eA~~~~~~~~~-~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 735 (877)
....|.++++++.. ..+..-..+++++...... -.-.-..+++++++.-|+. ...++--.+++-.+.|..+.|..+
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 88889999988753 2222222233332110000 0112234455555544422 244566678888999999999999
Q ss_pred HHHhhh
Q 002814 736 VLEGKR 741 (877)
Q Consensus 736 ~~~~~~ 741 (877)
+.-+.+
T Consensus 681 ya~~sq 686 (835)
T KOG2047|consen 681 YAHGSQ 686 (835)
T ss_pred HHhhhh
Confidence 876643
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.5e-09 Score=111.55 Aligned_cols=453 Identities=13% Similarity=0.065 Sum_probs=285.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCC-------
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALN--EGY------- 224 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~------- 224 (877)
.+|.+...+.+++.-.|++++|..+...-.-.+ .+.........++.+..++++|..++..... ..+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~----~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLEK----RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 467888889999999999998887765432221 2334556667788899999999988873210 000
Q ss_pred ----CCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002814 225 ----GNTVY-----------AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD 289 (877)
Q Consensus 225 ----~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~ 289 (877)
..|.. .+-.-...|....+.++|.+.|.+... -|...|..+...... ..-.+.+.++.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~---~mlt~~Ee~~l 195 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA---HMLTAQEEFEL 195 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH---HhcchhHHHHH
Confidence 00100 001111234444566777777777665 355454444333221 11222222333
Q ss_pred HHHCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC
Q 002814 290 MLRNG----VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (877)
Q Consensus 290 m~~~g----~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 365 (877)
+.... ..-+......+.....-...-+.....-.+..-.|...+........+-+...+++.+..++++++.+. .
T Consensus 196 l~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-d 274 (611)
T KOG1173|consen 196 LESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-D 274 (611)
T ss_pred HhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-C
Confidence 32211 111222222222221100000111111111111233456667777778888889999999999988876 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 366 SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (877)
Q Consensus 366 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 445 (877)
++....+..-|.++...|+..+-..+=.++.+.- +-...+|-++.-.|.-.|+..+|++.|.+....+ +.-...|-.+
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~f 352 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAF 352 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHH
Confidence 4466667777778888888888887777887763 5557889888888888899999999998877554 3345678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 002814 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525 (877)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 525 (877)
...|+-.|.-|.|+..+...-+. ++-...-+--+..-|.+.++.+.|.++|.+..... +-|+..++-+.-...+.+.+
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhh
Confidence 89999999999999888776553 11122222234455778889999999998887754 44777888887777788889
Q ss_pred HHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchh
Q 002814 526 ESAVSLLDEMTKE--GIR----PNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (877)
Q Consensus 526 ~~A~~~~~~m~~~--g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (877)
.+|..+|+..+.. .+. --..+++.|..+|.+.+++++|+..++++|...+.+.+.. .
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~-----------------a 493 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH-----------------A 493 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH-----------------H
Confidence 9999999887631 011 1234677888889999999999999999998877664322 2
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656 (877)
Q Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~ 656 (877)
++.-.+.. .|.++.|++.|++.+. ++||..+...+|..+.
T Consensus 494 sig~iy~l---------------lgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 494 SIGYIYHL---------------LGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHH---------------hcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 22222221 1366779999998876 8899888777776443
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=9.2e-09 Score=104.41 Aligned_cols=286 Identities=16% Similarity=0.142 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 276 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
.| ++.+|+++..+..+.+-. ....|..-+.+.-..|+.+.+-+++.++.+.--.++..++-+........|+++.|..
T Consensus 97 eG-~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EG-DFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cC-cHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 46 788888888776666543 2344555556677788888888888888776435567777777788888888888888
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLVCK 428 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~~~~~li~~~~~~g~~~~A~~~~~ 428 (877)
-++++.+.+.. +.........+|.+.|++.+...++..|.+.|.--|. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88877776544 6677788888888888888888888888887755554 356666666555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 429 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
.....- +.++..-.+++.-+.++|+.++|.++..+..+++..++.. ..-.+.+.++.+.-.+..++-.+.. +-+
T Consensus 254 ~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 554332 4566677778888888999999999998888887766622 2223456677777777776665543 235
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
.-.+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|.-+.+++.+.|+.++|.+..++++-
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 57888888889999999999999997776 468888999999999999999888887777764
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=3e-09 Score=107.87 Aligned_cols=286 Identities=15% Similarity=0.109 Sum_probs=169.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHH
Q 002814 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285 (877)
Q Consensus 206 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~ 285 (877)
.|+|..|+++..+..+.+.. .+..|..-+.+.-..|+.+.|-.++.+..+.--.++...+-+........| ++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~-d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR-DYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC-CchhHHH
Confidence 46666666666665555433 233444444555556666666666666655322344444555555555555 6666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-------IFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
-.+++.+.+.. +.........+|.+.|++.....++..|.+.|.-.| ..+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 66666555433 445555556666666666666666666666654333 2355666666655555555555666
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 438 (877)
+...+ .+-+...-.+++.-+.++|+.++|.++.++..+.+..+... ..-.+.+-++.+.-++..++-.+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55543 23345555666666777777777777777776665444411 1123345566666666655554432 345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.+++++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 566777777777777777777777766654 56777777777777777777777777766553
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=1.2e-07 Score=101.75 Aligned_cols=222 Identities=18% Similarity=0.207 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 317 (877)
+...|+-++|.+....-.+..+. +.++|+.+.-.+.... ++++|++.|..+...+.. |...+.-|.-.-...|+++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK-~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDK-KYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhh-hHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhh
Confidence 33444555555444444433322 3444444444443333 455555555555443221 33333333333344444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISPNVVTYSTMI------DGYAKAGRLDDALN 390 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~~~~~li------~~~~~~g~~~~A~~ 390 (877)
......++.+.. +..-..|..++.++.-.|++..|..++++..+.. -.|+...|.-.. ....+.|..++|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 444444444321 1133445555555555555555555555554432 123333332221 22344566666666
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHH-HHHHHHHH
Q 002814 391 MFSEMKFLGIGLDRVSY-NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA-LLGGYGKQGKYDEVR-RMFEQMKA 467 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~ 467 (877)
.+..-... ..|...+ .+-.+.+.+.+++++|..++..++... ||...|+. +..++.+-.+.-++. .+|....+
T Consensus 207 ~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 207 HLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 55544332 2233332 233455667777777777777777654 44444443 333443333333333 55555443
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=5.5e-08 Score=104.35 Aligned_cols=399 Identities=14% Similarity=0.148 Sum_probs=260.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+++.| ..+++...+++.+.+++.. +..+.+.....-.+...|+-++|.......+...+. +.+.|..+.-.+...
T Consensus 14 ~lk~y-E~kQYkkgLK~~~~iL~k~---~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 14 ALKCY-ETKQYKKGLKLIKQILKKF---PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHhC---CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 34433 4678888999998888854 333445566666788899999999999998876554 778999998888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
.++++|+.+|......+.. |...|.-+--.-.+.+ +++.......+..+... -....|..++.++.-.|++..|..+
T Consensus 89 K~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885533 5556655554455666 77777777777766522 2455677788888889999999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHH------HHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 322 FNEMVHRG-IDQDIFTYNTLLD------AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (877)
Q Consensus 322 ~~~m~~~g-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (877)
+++..+.. -.++...|..... ...+.|..++|.+.+..-... +.-....-.+....+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 99988764 2456655544433 345678888898888766543 221233345667889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 395 MKFLGIGLDRVSYNTVLSIYA-KLGRFEEAL-LVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 395 m~~~g~~pd~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
++.. .||...|...+..+. +--+.-++. .+|....+.- +.....-..=+....-..-.+....++..+.++|+++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 9988 678777766655443 344444444 6666554431 1111110001111111223344556677777887654
Q ss_pred CHHHHHHHHHHHHhcCCHH---H-HHHHHHHHHHCC----------CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYK---E-AMQIFREFKQAG----------LKADVVLYS--ALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~---~-A~~~~~~m~~~g----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
- +..+...|-.-...+ + +..+...+...| -+|....|. .++..+-+.|+++.|...++..+
T Consensus 322 v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 V---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred h---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3 333333332222111 1 111111111111 145555444 56777888999999999999998
Q ss_pred HCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 537 KEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 537 ~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
++ .|+.+ -|..-...+...|++++|...++++.+....+
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 75 67665 66666778889999999998888887765443
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=8.7e-10 Score=126.48 Aligned_cols=149 Identities=12% Similarity=-0.056 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFN 323 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 323 (877)
+++|...+++..+.+.. +..++..+...+...| ++++|...|+++++.+.. +...+..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHS-EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444444443221 3334444444444444 444555555544443211 23334444444444455555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 324 EMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 324 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
++++.... +...+..++..+...|++++|++.++++.....+-+...+..+..+|...|++++|...+.++.
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 44443211 1112222222333444455555555444432111123334444444445555555555554443
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.7e-08 Score=104.52 Aligned_cols=455 Identities=16% Similarity=0.172 Sum_probs=245.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--h
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG--R 240 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~ 240 (877)
+..+...+++++|.+....++..+ +++..++..-+-++...++|++|+.+.+.-.... .-+.+. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHH
Confidence 455677889999999999998875 4555677777788899999999996655432210 011111 345555 7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 002814 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAAR 319 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 319 (877)
.++.++|+..++-+.. -+..+...-...+.+.+ ++++|+.+|+.+.+.+.+- |...-..++.+-.. -.+.
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH
Confidence 8999999999983332 13345555566688888 9999999999998775431 11111222221111 1111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-------C------CCCCHH-HHHHHHHHHHHcCCH
Q 002814 320 NLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------N------ISPNVV-TYSTMIDGYAKAGRL 385 (877)
Q Consensus 320 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g------~~pd~~-~~~~li~~~~~~g~~ 385 (877)
+.+..... ...+-..+....-.+...|++.+|+++++...+. + +.-+.. .--.|.-.+...|+.
T Consensus 163 -~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 -LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 12222111 1112222333445567789999999999877221 1 110111 122345567788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHHC-----------CCCCCHHHHHHHHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFE-EALLVCKEMESS-----------GIRKDAVTYNALLGGY 449 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~----~~~li~~~~~~g~~~-~A~~~~~~m~~~-----------g~~~~~~~~~~li~~~ 449 (877)
++|..++...+... .+|... -|.|+.+-....-++ .++..++..... .-.-....-+.++.+|
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988875 445422 233332211111111 122222221110 0000111122334444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSK-GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
. +..+.+.++-..... ..|... +.+++.. +-. .....+|.+++...-+....-..+..-.++.....+|+++.
T Consensus 320 t--nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred h--hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2 333444444333221 233333 3333333 222 22467777777777665433334555666667778899999
Q ss_pred HHHHHH--------HHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchh
Q 002814 528 AVSLLD--------EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (877)
Q Consensus 528 A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (877)
|++++. ...+.+..|- +...++..+.+.++-+.|..++.+++..
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~-------------------------- 446 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKW-------------------------- 446 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHH--------------------------
Confidence 999888 4444444333 4445556666666655555554444432
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcc
Q 002814 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQV 678 (877)
Q Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~ 678 (877)
++.-+. ..+.. .++.-+...--+.|+-++|..+++++.+.++++
T Consensus 447 ---------------------------------~~~~~t--~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 447 ---------------------------------WRKQQT--GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred ---------------------------------HHHhcc--cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 222111 00000 111111112224477788888888888777777
Q ss_pred hhHHHHHhhccccchHHHHHHHHHHH
Q 002814 679 YGVAHGLLMGYRDNIWVQALSLFDEV 704 (877)
Q Consensus 679 ~~~~~~l~~~~~~~~~~~A~~~~~~~ 704 (877)
..++..++.++..-+.++|+.+-+++
T Consensus 492 ~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 492 TDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 77777776666666677777776644
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=2e-07 Score=92.54 Aligned_cols=372 Identities=12% Similarity=0.177 Sum_probs=199.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 239 (877)
.++..++.+.|++++|+..|..+.... ..+..+...+.-++.-.|.+.+|..+-.++.+ +.-.-..|....-
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlah 132 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHH
Confidence 345666667777888777777766543 23344556666666667777777776665432 2222333334444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhCCCHHH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL-AVCSRGGLWEA 317 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~ 317 (877)
+.++-++-..+-+.+.. ...---+|... |.+. .+.+|+++|.+.+.. .|+-...|.-+ -+|.+..-++-
T Consensus 133 klndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~--HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRM--HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhh
Confidence 55655555444444432 11111112222 3333 477788888777765 33444444433 34566666777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA-----GRLDDALNMF 392 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-----g~~~~A~~~~ 392 (877)
+.++++-.++. ++.+...-|..+....+.=+-..|.+-..++.+.+-. . --.+.-.++. .+-+.|++++
T Consensus 204 sqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~-~~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 204 SQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----E-YPFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----c-chhHHHHHHcCeEEEeCCccHHHhc
Confidence 77777666654 3334455555544444433333333333333332111 0 1123333333 2345666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG-------KYDEVRRMFEQM 465 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m 465 (877)
--+.+. -| ..-..|+-.|.+.+++.+|..+.+++. +.++.-|..-.-.++..| .+.-|.+.|+-.
T Consensus 278 P~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 278 PSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred hHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 555432 22 233445666788888888888877664 333333332222333333 345566666655
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 002814 466 KADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544 (877)
Q Consensus 466 ~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 544 (877)
-+++..-|. .--.++..++.-..++++.+.+++.+..--..-|...+ .+..+++..|++.+|.++|-+...-.++ |.
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~ 427 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NK 427 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hh
Confidence 444433332 22334555666667788888777777654333333333 4677888888999998888776554444 55
Q ss_pred HHHHHHH-HHHhhcCChhhhH
Q 002814 545 VTYNSII-DAFGRSATTECTV 564 (877)
Q Consensus 545 ~~~~~li-~~~~~~g~~~~a~ 564 (877)
.+|.+++ .+|.+.++.+.|.
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHH
Confidence 5665444 4567777665543
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=2.5e-08 Score=110.13 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002814 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
.+|..+|.-||..|+.+.|- +|.-|.....+.+..+|+.++.+....++.+.+. .|-..||..|+.+|
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAY 93 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHH
Confidence 45566666666666666555 5555554444445555666666555555544443 25555666666666
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH-RGIDQDIFTYNTLLDAICKGAQMDL 352 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~ 352 (877)
...| |+.. ++..++ -...+...+...|.-.....++..+.- .+.-||.. +.+....-.|-++.
T Consensus 94 r~hG-Dli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 94 RIHG-DLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred Hhcc-chHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 6665 5433 111111 001111122223322222222222111 11223322 23444455677777
Q ss_pred HHHHHHHchhCCCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 353 AFEIMAEMPAKNIS-PNVVTYSTMIDGYAKAG-RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 353 A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+++++..+...... |-.+ +++-+.... .+++-..+.+...+ .++..+|..++..-..+|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 77777776543211 1111 233332222 23333333333322 588889999999888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002814 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 431 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 489 (877)
.+.|++.+..-|-.|+.+ .++..-+..++.-|.+.|+.|+..|+..-+..+.++|.
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999988888777777765 77778888888888899999999998887777777555
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.3e-09 Score=105.04 Aligned_cols=229 Identities=14% Similarity=0.064 Sum_probs=143.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHc
Q 002814 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN-AVIDACGK 275 (877)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~ 275 (877)
..+..+|.+.|.+.+|.+.|+..++.. +-+.+|..|.++|.+..+...|+.+|.+-.+. .|-.+||- -+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 456667777777777777777666653 34456666667777777777777777666542 34444443 34444555
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 276 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
.+ +.++|.++|+...+.. ..++.....+...|.-.++.|.|+++|+++++.|+. +...|+.+.-+|.-.+++|-++-
T Consensus 303 m~-~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 ME-QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HH-hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 55 6677777777766542 224445555555666667777777777777777655 56666666666666777777777
Q ss_pred HHHHchhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 356 IMAEMPAKNISPN--VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (877)
Q Consensus 356 ~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (877)
.|++....--.|+ ...|-.+.......|++..|...|+-....+ .-+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7666554322222 2345556666666777777777777666553 334566777776667777777777777766543
No 66
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=1.3e-07 Score=105.82 Aligned_cols=563 Identities=13% Similarity=0.091 Sum_probs=267.7
Q ss_pred HHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 144 DILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
.+++++.....-...|.++..-|....+..+|.++|..+...+ +.+........+.|.+..+++.|..+.-..-+..
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 3334443333333445555555555555556666666665553 3334455556666666666666665532222111
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH-
Q 002814 224 YG-NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT- 301 (877)
Q Consensus 224 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t- 301 (877)
.. .-...|.-+.-.|.+.+++..|+..|+...+..++ |...|..+..+|...| .+..|+++|.++... .|+...
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~L--rP~s~y~ 632 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESG-RYSHALKVFTKASLL--RPLSKYG 632 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcC-ceehHHHhhhhhHhc--CcHhHHH
Confidence 00 00111222333445556666666666666654333 5666666777777766 666777777666553 332211
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHchhCCCCCC
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHR------GIDQDIFTYNTLLDAICKGAQMDL-------AFEIMAEMPAKNISPN 368 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~-------A~~~~~~m~~~g~~pd 368 (877)
-.-.....+..|++.+|...++..+.. +..--..++-.+...+.-.|-..+ +++.|.-.......-|
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 111222344566666666666655432 000011222222222222222222 2222222222211112
Q ss_pred HHHHHHHHHHHHHcCCHH--H----HHHH-HHHHHHCCC--------------------CCCHHHHHHHHHHHHH----c
Q 002814 369 VVTYSTMIDGYAKAGRLD--D----ALNM-FSEMKFLGI--------------------GLDRVSYNTVLSIYAK----L 417 (877)
Q Consensus 369 ~~~~~~li~~~~~~g~~~--~----A~~~-~~~m~~~g~--------------------~pd~~~~~~li~~~~~----~ 417 (877)
...|-.+-++|.-.-..+ . ...+ +.+....+. ..+..+|..|+..|.+ .
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 233322222221100000 0 0000 011111111 1122333333333322 1
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 418 ----GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 418 ----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
.+...|+..+.+.++.. ..+..+||+|.-. ...|.+.-|...|-+-... .+-+..+|..+...+.+..+++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHh
Confidence 12345667777666554 4566777776554 5567777777777665554 234667777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHH
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM--T--KEGIRPNVVTYNSIIDAFGRSATTECTVDDVER 569 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 569 (877)
...|...+...+ .|...|-...-.....|+.-++..+|..- . ..|-.++..-|.+....-...|+.++-+...++
T Consensus 870 ~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 888888776542 35666665555556677777777777662 2 224455665565555555666766554433222
Q ss_pred HhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHC-CCCCCHHHH
Q 002814 570 DLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKL-KIKPNVVTF 648 (877)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~-g~~Pd~~t~ 648 (877)
.-....- + ...+.+..+. ..+..+. |.. ....+++.+|.++..+.... ..+-|..+|
T Consensus 949 i~sAs~a---l-~~yf~~~p~~-------~fAy~~~--------gst---lEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 949 ISSASLA---L-SYYFLGHPQL-------CFAYAAN--------GST---LEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred hhhhHHH---H-HHHHhcCcch-------hHHHHHH--------HhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1110000 0 0000000000 0000000 000 01122455566555554310 022344444
Q ss_pred H----HHHHHHHcCCCHHHHHHHHHHHH-hcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCC-Ccc-hhHHHHHHH
Q 002814 649 S----AILNACSRCNSFEDASMLLEELR-LFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDS-STA-SAFYNALTD 721 (877)
Q Consensus 649 ~----~ll~a~~~~g~~~eA~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~ 721 (877)
+ -....++..|.++.|...+...- +.+....+..-. .+-.++++++.+.|+++..+-- +.+ ......+++
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~---lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~ 1083 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT---LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAV 1083 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH---HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHH
Confidence 4 33445566777887776654322 111122222111 1246789999999999876432 222 234455666
Q ss_pred HHHhcCchhhHHHHHHHhhhh
Q 002814 722 MLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.....++.+.|...+.+.+..
T Consensus 1084 ~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1084 CMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHhhcccchHHHHHHHHHHHh
Confidence 777788888898887665543
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3e-09 Score=122.04 Aligned_cols=251 Identities=13% Similarity=0.053 Sum_probs=175.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 242 GYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACG---------KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
+.+++|+.+|++..+.. |+ ...|..+..++. ..+ ++++|...++++++.... +...+..+..++..
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~-~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQN-AMIKAKEHAIKATELDHN-NPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccch-HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 45678888888887643 43 444544444332 223 578999999999887543 67778888888889
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
.|++++|...|+++++.. +.+...+..+...+...|++++|+..+++..+.+.. +...+..++..+...|++++|+..
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999998875 335778888899999999999999999998886433 333344455567778999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C
Q 002814 392 FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-V 470 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 470 (877)
++++.....+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+.. .
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 9988765322245557778888889999999999998876542 334555566666777777 47777777766532 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 471 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
.+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2222222 33334446666666665 7777654
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=4.9e-09 Score=106.59 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..+..+...|...|++++|++.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444444444444444444444332 1133444444445555555555555555444432 22334444444555
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
...|++++|...+++..+... ......+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555543211 1123344445555555566666666655555432 22344555555555556666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66665555441 2344444455555555666666665555544
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=5.7e-09 Score=106.15 Aligned_cols=200 Identities=15% Similarity=0.078 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
....+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45678888999999999999999999998764 4457788889999999999999999999998875 556778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
.|...|++++|.+.|+++.+... ......+..+...+...|++++|...|++..+... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987532 22456677788899999999999999999988653 35678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHh
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l 571 (877)
+|...++++.+. ...+...+..+...+...|+.++|....+...
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999876 34456677788888889999998877655443
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=6.2e-09 Score=114.81 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=173.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002814 250 VFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG 329 (877)
Q Consensus 250 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g 329 (877)
++-.+...|+.||.+||..+|.-||..| +.+.|- +|.-|.-.....+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4455666777777777888877777777 776666 7777766666666777777777777777766665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 002814 330 IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF-LGIGLDRVSYN 408 (877)
Q Consensus 330 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~ 408 (877)
.|-..+|..|..+|.+.|++.. |+...+ ..-.++..+...|....-..++..+.- -+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 4667777888888888777665 222222 122234445555555555555554332 233444443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002814 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG 487 (877)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 487 (877)
.+......|.++.+++++..+-...- ...... +++-+.... .+++-..+-....+ .|+..+|.+++.+-...
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 23333455667777776655432210 011111 133222222 22322222222222 47888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhh
Q 002814 488 GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 488 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 563 (877)
|+.+.|..++.+|.+.|+..+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+.-.+-.+...|....+
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 8888888888888888888777777777655 777788888888888888888888888777666666654443
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=2.9e-08 Score=109.86 Aligned_cols=295 Identities=18% Similarity=0.214 Sum_probs=186.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
........+...|++++|++.++..... ..+........+..+.+.|+.++|..+|..++++++. |..-|..+..+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~ 81 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 3444556678889999999998776555 3556678888899999999999999999999998654 66677777776
Q ss_pred HHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 238 YGRSG-----YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF-KHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 238 ~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
..-.. ..+....+|+++...- |...+...+.-.+.... .+ ..+..++..+++.|++ .+|+.|-..|..
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGD-EFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHH-HHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 63332 5677788888887643 44444333332233222 33 3455666777778765 356666667765
Q ss_pred CCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC-HHHHHH
Q 002814 312 GGLWEAARNLFNEMVHR----G----------IDQDI--FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYST 374 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ 374 (877)
..+.+-..+++..+... + -.|.. .++.-+...|...|++++|++.+++.++.. |+ +..|.+
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~ 233 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMT 233 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHH
Confidence 55555555666555432 1 12233 344555666677777777777777776652 33 556667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHH
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV------TY--NALL 446 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~------~~--~~li 446 (877)
..+.|-+.|++++|.+.++.....+ .-|...-+-.+..+.++|++++|.+++....+.+..+-.. .| ....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 7777777777777777777777665 4456666666667777777777777777666554311110 11 2234
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m 465 (877)
.+|.+.|++..|++.|..+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4555555555555554444
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=8.5e-07 Score=88.20 Aligned_cols=391 Identities=14% Similarity=0.101 Sum_probs=238.0
Q ss_pred cCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
..+..+.+..+.-...-.|.+.+|..+-..+ +.++-....|...-.+.|+-++...+.+.+.. +..-.
T Consensus 87 ~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~Edq 154 (557)
T KOG3785|consen 87 DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQ 154 (557)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHH
Confidence 3344455555666666677788877765543 33333344556666788888888887777654 23444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 232 SALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (877)
Q Consensus 232 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 310 (877)
.+|.+.....-.+++|+++|.+....+ |+-...|..+.. |.+.. -++-+.++++-.++. ++-.....|..+....
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q-~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF 230 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh
Confidence 556665555567999999999998743 666677765555 56666 677888888877765 2223344454443333
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 385 (877)
+.=.-..|.+-..++.+.+-.. .-.+.-+++. .+-+.|++++--+.+. -...--.|+-.|.+.+++
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDV 301 (557)
T ss_pred hhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccH
Confidence 3222223344444555433111 1123333433 3457788887666553 233444567778999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG-------RFEEALLVCKEMESSGIRKDAV-TYNALLGGYGKQGKYDE 457 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 457 (877)
.+|..+.+++. +.++.-|..-.-.+...| .+.-|.+.|...-+.+..-|.. --.++...+.-..++++
T Consensus 302 qeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 302 QEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred HHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 99999988764 223333322222233333 3455666666555554443322 23355566666778999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHH
Q 002814 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS-ALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 458 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.+..++.+...-...|...+| +.++++..|++.+|.++|-.+....++ |..+|. .|.++|.++++.+-|++++-++-
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 999999888765555555555 889999999999999999877655444 555665 55678899999999998876664
Q ss_pred HCCCCCCHHHHH-HHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 537 KEGIRPNVVTYN-SIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 537 ~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
. .-+..+.- .+..-|.+.+.+=-|.+.+...-...|.
T Consensus 456 t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 456 T---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred C---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 3 22334333 4445677777665444444333333333
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.2e-09 Score=104.02 Aligned_cols=232 Identities=15% Similarity=0.031 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 379 (877)
+.-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+..+.+.|+.+|.+-.+. ++-|+....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33445556666666666666666665554 244555666666666666666666666665543 222333334455556
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 380 AKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 459 (877)
-..++.++|.++|+...+.. ..+......+...|.-.++.+.|+..|+++.+.| .-+...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhH
Confidence 66666666666666666553 3445555555566666666677777777766666 345566666666666666666666
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 460 RMFEQMKADCVSPN--LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 460 ~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
.-|.+.+..--.|+ ...|-.+.......|++..|.+.|+-....+. -....+|.|.-.-.+.|++++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666655432233 23455555555556666666666666665442 2455666666666666777777776666655
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=8.5e-06 Score=89.76 Aligned_cols=378 Identities=16% Similarity=0.061 Sum_probs=230.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 002814 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (877)
Q Consensus 295 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 374 (877)
+.-|...|..|.-+....|+++.+.+.|++....- .-....|+.+...|.-+|.-..|..++++.......|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44577778888888888899999999998887642 23567788888888888888888888887665543343333222
Q ss_pred H-HHHH-HHcCCHHHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHCCCCC
Q 002814 375 M-IDGY-AKAGRLDDALNMFSEMKFL--G--IGLDRVSYNTVLSIYAKLG-----------RFEEALLVCKEMESSGIRK 437 (877)
Q Consensus 375 l-i~~~-~~~g~~~~A~~~~~~m~~~--g--~~pd~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~~ 437 (877)
| -..| -+.+..++++++-.+.... + -......|..+.-+|...- ...++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 2 2333 3456777777776666552 1 1223445555555554221 2356677777777665 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
|..+...+.--|+..++++.|.+...+.++.+-.-+...|..|.-.+...+++.+|+.+.+...+.- .-|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333444577788889999988888887666688888888888888888888888887765431 111111111122
Q ss_pred HHHHcCChHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHH-------------------
Q 002814 518 ALCKNGLVESAVSLLDEMTKE---------------------G-------IRPNVVTYNSI------------------- 550 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---------------------g-------~~p~~~~~~~l------------------- 550 (877)
.-..-++.++|+.....+... | ..-...++..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 222233333333332222210 0 00011122222
Q ss_pred ---------------------HHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHH
Q 002814 551 ---------------------IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLV 609 (877)
Q Consensus 551 ---------------------i~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (877)
.+.+.+.+..++|...+.++-...+... ..+...
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~------------------------~~~~~~- 690 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA------------------------SVYYLR- 690 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH------------------------HHHHHh-
Confidence 2222222222222222222222111110 001100
Q ss_pred HHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCCHHHHHH--HHHHHHhcCCcchhHHHHHh
Q 002814 610 AEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVV-TFSAILNACSRCNSFEDASM--LLEELRLFDNQVYGVAHGLL 686 (877)
Q Consensus 610 ~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~--~~~~~~~~~~~~~~~~~~l~ 686 (877)
|+. ...++...||.+.|..... +.||.+ +..++.-++...|+-.-|.+ ++.++.+.||.++.+++.+.
T Consensus 691 ----G~~---~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 691 ----GLL---LEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred ----hHH---HHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 100 2234577889999998887 789655 68889999999998777766 99999999999999999887
Q ss_pred hcc-ccchHHHHHHHHHHHhhcCC
Q 002814 687 MGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 687 ~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
... ..|+.++|.+.|+-+.+++.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhcc
Confidence 665 68999999999999999877
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=2.8e-08 Score=108.55 Aligned_cols=249 Identities=20% Similarity=0.224 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CC
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESS-----GI-RKDAV-TYNALLGGYGKQGKYDEVRRMFEQMKAD-----C-VS 471 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~ 471 (877)
.+...|...|...|+++.|..+++..++. |. .+.+. ..+.+...|...+++++|..+|++++.. | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455666677777777777766665432 10 11211 1223555666666677666666666532 1 11
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 002814 472 P-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----GL-KADVV-LYSALIDALCKNGLVESAVSLLDEMTKE---GI 540 (877)
Q Consensus 472 p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 540 (877)
| -..+++.|...|.+.|++++|...+++..+. |. .+.+. .++.++..|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1344555556666666666666555554321 10 11111 2334444555566666666666554431 01
Q ss_pred CCCH----HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCC
Q 002814 541 RPNV----VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (877)
Q Consensus 541 ~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 616 (877)
.++. .+++.|...|.+.|++++|.+.+++++..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~------------------------------------------- 396 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI------------------------------------------- 396 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------------------------------------------
Confidence 1111 24555555555555555554443333321
Q ss_pred cchhhhhHhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHH
Q 002814 617 KKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWV 695 (877)
Q Consensus 617 ~~~~~~~~~~~~A~~~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 695 (877)
.++... +..+. ...++.|..+|...+..++|.++|++...
T Consensus 397 ----------------~~~~~~-~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~---------------------- 437 (508)
T KOG1840|consen 397 ----------------LRELLG-KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD---------------------- 437 (508)
T ss_pred ----------------HHhccc-CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH----------------------
Confidence 111111 12232 34578889999999999999999987762
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
+. +....+.......|-.|+-+|..+|++++|.++.....
T Consensus 438 ----i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 ----IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ----HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11122222345568889999999999999999876543
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-06 Score=88.56 Aligned_cols=268 Identities=11% Similarity=0.068 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
|+.....+.+.+...|+.++|+..|+.....+ |+ +.........+.+.|+++....+...+.... .-....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 33444445555555555555555555544321 11 1111222222334444444444444443321 00112222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 456 (877)
.......+++.|+.+-++.+... .-+...|..-...+...|+.++|.-.|+...... +-+...|.-|+..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 22333444445554444444332 2222333333344444555555555555444332 234445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLI-DVYS-KGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKNGLVESAVSLLD 533 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 533 (877)
+|..+-+..... +..+..+...+. ..+. ...--++|.+++++.... .|+. ...+.+...|...|..++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 554444433322 122333333221 1111 112234444444444332 2222 233334444444555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 534 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
.... ..||....+.|.+.+.....+++|++.+..++..+|
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 4443 234444444455555444445555444444444444
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.6e-06 Score=92.41 Aligned_cols=448 Identities=13% Similarity=0.124 Sum_probs=247.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHH--
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV--IDAC-- 273 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~~-- 273 (877)
+=++.+...|++++|.+...+++..+ +.+..++..-+-++.+.+++++|+.+.+.-.. ..+++.. =.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34567889999999999999999876 44677888888889999999999966654321 1222222 3444
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMD 351 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 351 (877)
.+.+ ..++|+..++ |..+ |..+...-...+.+.|++++|.++|+.+.+.+... |...-..++.+-.. -
T Consensus 90 Yrln-k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l 159 (652)
T KOG2376|consen 90 YRLN-KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----L 159 (652)
T ss_pred HHcc-cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----h
Confidence 4667 7899998887 3333 33466666678899999999999999998875321 11112222221111 1
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHC-------C-CC-CCHH-----HHHHHHHHH
Q 002814 352 LAFEIMAEMPAKNISPNVVTYSTMI---DGYAKAGRLDDALNMFSEMKFL-------G-IG-LDRV-----SYNTVLSIY 414 (877)
Q Consensus 352 ~A~~~~~~m~~~g~~pd~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~-------g-~~-pd~~-----~~~~li~~~ 414 (877)
.+ ++.+..... | ..+|..+. -.+...|++.+|++++...... + .. -+.. .-.-|.-++
T Consensus 160 ~~-~~~q~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 160 QV-QLLQSVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hH-HHHHhccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 11 123333322 2 33454443 3566789999999999987321 1 01 0111 112334456
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCH-H-HHHHHHHHHHHC-----------CCCCCHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVT----YNALLGGYGKQGKY-D-EVRRMFEQMKAD-----------CVSPNLLTY 477 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~-~-~A~~~~~~m~~~-----------g~~p~~~t~ 477 (877)
-..|+-++|..+|...++.. .+|... -|.|+.+ ....++ + .++..++..... .-.-....-
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998877 445422 2333222 111111 1 122222222111 000011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 556 (877)
+.++..| .+.-+.+.++...... ..|....=+.+..++. +.....+|.+++...-+....-..++.-.+++....
T Consensus 313 ~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALF--TNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 2222322 2233333333332221 1233322223333322 222466777777766654222223455566666677
Q ss_pred cCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHH
Q 002814 557 SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKM 636 (877)
Q Consensus 557 ~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m 636 (877)
.|+++.|++++...+.. .....
T Consensus 389 ~gn~~~A~~il~~~~~~----------------------------------------------------------~~ss~ 410 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLES----------------------------------------------------------WKSSI 410 (652)
T ss_pred cCCHHHHHHHHHHHhhh----------------------------------------------------------hhhhh
Confidence 77777666543221100 11133
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc------CCcchhHHHHHhhcc--ccchHHHHHHHHHHHhhcC
Q 002814 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF------DNQVYGVAHGLLMGY--RDNIWVQALSLFDEVKLMD 708 (877)
Q Consensus 637 ~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~~~~~A~~~~~~~~~~~ 708 (877)
.+.+..|..| .++...+.+.++-+.|..+++++... ......++...+.++ +.|.-++|.+.++++++..
T Consensus 411 ~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 411 LEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 3444556555 45667777777777777777776521 111111111112222 6689999999999999998
Q ss_pred CCcchhHHHHHHHHHHhcCchhhHHHH
Q 002814 709 SSTASAFYNALTDMLWHFGQKRGAQLV 735 (877)
Q Consensus 709 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (877)
| ++......|+-+|.... .+.|..+
T Consensus 489 ~-~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 489 P-NDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred C-chHHHHHHHHHHHHhcC-HHHHHHH
Confidence 8 77888888888888763 5555544
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=2.3e-08 Score=109.12 Aligned_cols=240 Identities=21% Similarity=0.293 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHR-----GI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 373 (877)
.+...|...|...|+++.|..+++..++. |. .+.+.+ ..+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~----------------------------------~l~ 245 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS----------------------------------MLN 245 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH----------------------------------HHH
Confidence 45555777777777777777777776653 10 011111 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCH-
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFL-----GI--GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-----GI-RKDA- 439 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~- 439 (877)
.+...|...+++++|..+|+++... |- +--..+++.|..+|.+.|++++|...+++..+. |. .+.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 2344444445555555554444321 10 001233444444555555555555444443211 10 1111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--C
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSP----NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----G--L 505 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~ 505 (877)
..++.++..|+..+++++|..++++..+.- +.+ -..+++.|...|.+.|++++|.++|+++++. | .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 223444555666666776666666543310 111 1356788888888888888888888877642 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCC-CCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 506 KADVVLYSALIDALCKNGLVESAVSLLDEMTK----EGI-RPNV-VTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
.-....++.|...|.+.+++.+|.++|.+... .|. .|+. .+|..|...|.+.|+++.|.++.+.++..
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 11245677888888889999988888887643 232 2444 48999999999999999999987776643
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.5e-10 Score=84.89 Aligned_cols=50 Identities=44% Similarity=0.796 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 002814 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 556 (877)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-07 Score=99.17 Aligned_cols=425 Identities=15% Similarity=0.122 Sum_probs=254.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGR 240 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 240 (877)
-..+....|+++.|+..|..++... |.+..+|+.-..+|.+.|++++|.+=-.+.++.. |+ ...|+-+..++.-
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~---p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS---PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFG 82 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC---CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHh
Confidence 4566778899999999999999886 4467789999999999999999988777777653 44 5688889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHH
Q 002814 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL-WEAAR 319 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A~ 319 (877)
.|++++|+.-|.+-++.... |...++-+..++.. + ..+.+.| -+...|..+..--..... .+.+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~---~-~~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE---D-YAADQLF---------TKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred cccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH---H-HHhhhhc---------cCcHHHHHhhcChhhhhhhccHHH
Confidence 99999999999998874322 45566666666511 1 1121111 122233222211111100 01111
Q ss_pred -HHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHH-HHHH------------HHchhCCCCC-C----------HHH
Q 002814 320 -NLFNEMVHRGIDQDIFTY---NTLLDAICKGAQMDLA-FEIM------------AEMPAKNISP-N----------VVT 371 (877)
Q Consensus 320 -~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A-~~~~------------~~m~~~g~~p-d----------~~~ 371 (877)
.+++.+.+ + +.++..| ..++.+.......+.- ...- ..+....... | ..-
T Consensus 149 ~~~l~~~~~-~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 149 VKILEIIQK-N-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHhhc-C-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 11111111 1 0001000 1111111111110000 0000 0000000000 1 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA------- 444 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~------- 444 (877)
...+.++..+..+++.|++.+....+.. -+..-++....+|...|.+.+........++.| .-...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 4457777788889999999999888774 345556667788999999988888887777666 222233332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
+..+|.+.++++.|+..|.+.+.....||.. .+....+++.+..+...-.+... ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3446777888999999999877654444332 23345556665555554433222 1122223667889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHH
Q 002814 525 VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (877)
Q Consensus 525 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (877)
+.+|++.|.++++.. +-|...|....-+|.+.|.+.+|+...+.+++++|+.... ++. ...+
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg--y~R-------------Kg~a-- 435 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA--YLR-------------KGAA-- 435 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH--HHH-------------HHHH--
Confidence 999999999999875 3356689999999999999999999999999987654211 110 0001
Q ss_pred HHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC 655 (877)
Q Consensus 605 ~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~ 655 (877)
...-+++++|++.|++.++ ..|+..-+.--+.-|
T Consensus 436 ---------------l~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 436 ---------------LRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Confidence 1111378889999999887 557655443333333
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=5.1e-07 Score=100.07 Aligned_cols=292 Identities=15% Similarity=0.166 Sum_probs=208.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG---- 274 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---- 274 (877)
...++...|++++|++.++...+. +.............+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 355678899999999999887654 33356777888899999999999999999999865 66666555554444
Q ss_pred c--CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 275 K--GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMD 351 (877)
Q Consensus 275 ~--~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 351 (877)
. .. +.+...++|+++...- |.......+.-.+.....+ ..+..++..++.+|++ .+++.|-..|....+.+
T Consensus 87 ~~~~~-~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDE-DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccc-cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 1 12 4677888999887653 3333332222222221222 3455666777788865 45677777777666655
Q ss_pred HHHHHHHHchhC----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 002814 352 LAFEIMAEMPAK----N----------ISPNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIY 414 (877)
Q Consensus 352 ~A~~~~~~m~~~----g----------~~pd~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~ 414 (877)
-..+++...... + -.|.. .++..+...|-..|++++|++++++.++. .|+ ...|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 555666554322 1 12344 34466677888999999999999999987 454 67788888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHh
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--------TYSTLIDVYSK 486 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~li~~~~~ 486 (877)
-..|++.+|.+.++.....+ .-|...-+-.+..+.++|++++|.+++......+..|-.. .......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 5677888888889999999999999999887765432211 12455678889
Q ss_pred cCCHHHHHHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQ 502 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~ 502 (877)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999998887766654
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=1.8e-10 Score=84.36 Aligned_cols=47 Identities=47% Similarity=0.808 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
|+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=1.2e-07 Score=99.62 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=135.3
Q ss_pred ccCCHHHHHHHHHHHHHccccC-CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 168 NRGEWSKAIQCFAFAVKREERK-NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 246 (877)
..++.+.++..+..++...... ......+..+...+.+.|+.++|...|+++++..+. +..+|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3455667777777777543221 223456777777788888888888888888876543 67788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 326 (877)
|+..|++..+.... +..+|..+..++...| ++++|++.|++.++.. |+..........+...++.++|...|++..
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g-~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGG-RYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88888888774322 4566777777777778 8888888888887753 333222222223445667888888886655
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh---CCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 327 HRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA---KNIS---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (877)
Q Consensus 327 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 399 (877)
... .++...+ .+ .....|+..++ +.++.+.+ ..+. .....|..+...|.+.|++++|+..|++..+..
T Consensus 193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 432 2222221 22 22234444333 23333321 1110 122456667777777777777777777766653
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=1.3e-06 Score=86.64 Aligned_cols=328 Identities=15% Similarity=0.122 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSY-NTV 410 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~l 410 (877)
.-..-+...+...|++.+|+.-|...++. |...|.++ ...|...|+-.-|+.-|...++. +||-..- .--
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 33344445555555555555555555543 33333332 23455555555555555555544 4443221 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 490 (877)
...+.+.|.+++|..=|+.+++.. |+.. ....++.+.--.++-.. ....+..+.-.|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCch
Confidence 233445555555555555555442 1110 11111211111111111 12233445668899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHH
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERD 570 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 570 (877)
..|++....+++.. +.|...|..-..+|...|++..|+.-++...+.. ..+..++..+-..+...|+.+.++..+.+.
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998865 5688899999999999999999998888776642 335567777888889999999999999999
Q ss_pred hhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCC--HHHH
Q 002814 571 LGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN--VVTF 648 (877)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd--~~t~ 648 (877)
|+++|+.. .|. ..+..+-++...+..... ....+++-++++..++.++. .|. .+.|
T Consensus 250 LKldpdHK----~Cf----------~~YKklkKv~K~les~e~------~ie~~~~t~cle~ge~vlk~--ep~~~~ir~ 307 (504)
T KOG0624|consen 250 LKLDPDHK----LCF----------PFYKKLKKVVKSLESAEQ------AIEEKHWTECLEAGEKVLKN--EPEETMIRY 307 (504)
T ss_pred HccCcchh----hHH----------HHHHHHHHHHHHHHHHHH------HHhhhhHHHHHHHHHHHHhc--CCcccceee
Confidence 99988753 111 122222222222111100 11123666777777777663 343 2333
Q ss_pred H---HHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchh
Q 002814 649 S---AILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASA 714 (877)
Q Consensus 649 ~---~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ 714 (877)
+ .+-.++...|++-||++...+++..+|.+..++..-..++ ....++.|+.-|+++.+.++ .|..
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~-sn~~ 376 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE-SNTR 376 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-ccHH
Confidence 3 3334556678888888888888888888777766554444 45678888888888888877 4433
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=5.1e-07 Score=87.71 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhhhhchhhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVW 749 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 749 (877)
++.-+.+|+||+..++..+.++|....+-.-..++|
T Consensus 415 PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 415 PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 457788999999999999999998876654444444
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=7e-06 Score=81.62 Aligned_cols=205 Identities=13% Similarity=0.151 Sum_probs=124.1
Q ss_pred HHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 345 CKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEAL 424 (877)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 424 (877)
.-.|+...|++....+.+..+. |...|..-..+|...|....|+.-++...+.. .-+..++.-+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 3445555556555555554332 55556666666667777776666666555443 334555555566666777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 425 LVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 425 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
...++.++. .||...+... |- .+.+..+.++.|.+. ...+++.++++-.+...+..
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~---YK---klkKv~K~les~e~~----------------ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPF---YK---KLKKVVKSLESAEQA----------------IEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHHcc--CcchhhHHHH---HH---HHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHhcC
Confidence 777776654 3554433221 11 223333333333322 34556666666666666654
Q ss_pred CCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 505 LKADVVL---YSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 505 ~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
..-..+. +..+-.++...|++.+|+....+.++ +.|+ ..++.--..+|.-...++.|++.++.+.+.++++
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 3222223 33445566677888899888888887 4565 5588888888888888888988888888876654
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.1e-07 Score=94.77 Aligned_cols=397 Identities=13% Similarity=0.108 Sum_probs=225.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHHHcCC
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGR 384 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~ 384 (877)
.++.+..|+++.|...|.+.+.... +|.+.|..-..+|++.|++++|++=-.+-.+. .|+ ...|+-+..++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3566788999999999999998754 48899999999999999999998877666654 455 4678888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHCC---CCCCHHHHHHHHHHHHHc------
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA---LLVCKEMESSG---IRKDAVTYNALLGGYGKQ------ 452 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g---~~~~~~~~~~li~~~~~~------ 452 (877)
+++|+.-|.+-.+.. +-|...++-+.+++.......+. -.++..+...- .......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999988774 55677888888877211111000 00111110000 000011122222222110
Q ss_pred ----CCHHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 002814 453 ----GKYDEVRRMFEQ-----MKADC-------VSP------------N----------LLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 453 ----g~~~~A~~~~~~-----m~~~g-------~~p------------~----------~~t~~~li~~~~~~g~~~~A~ 494 (877)
.++..|.-.+.. +...+ ..| | ..-...+..+..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111111111110 00000 111 0 111345566666777888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-------HHhhcCChhhhHHHH
Q 002814 495 QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID-------AFGRSATTECTVDDV 567 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-------~~~~~g~~~~a~~~~ 567 (877)
+-+....+.. -+..-++....+|...|.+.+........++.|.. ...-|+.+.. +|.+.++++.++..+
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8888887754 35555666677888888888888777777766532 2223333333 455566777778777
Q ss_pred HHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHH---HHHhcC---CcchhhhhHhHHHHHHHHHHHHHCCC
Q 002814 568 ERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLV---AEKAGQ---GKKENRCRQEILCILGVFQKMHKLKI 641 (877)
Q Consensus 568 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~---~~~~~~~~~~~~~A~~~~~~m~~~g~ 641 (877)
.+++........+ ..+ .............. -+.+.. ...+....+++.+|+..|.+++..
T Consensus 322 ~kaLte~Rt~~~l-s~l-----------k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-- 387 (539)
T KOG0548|consen 322 QKALTEHRTPDLL-SKL-----------KEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-- 387 (539)
T ss_pred HHHhhhhcCHHHH-HHH-----------HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--
Confidence 7776654331100 000 01111111111000 000000 000012235677777777777763
Q ss_pred CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHH
Q 002814 642 KP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNAL 719 (877)
Q Consensus 642 ~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 719 (877)
.| |...|+.-.-+|.+.|.+.+|.+-.+..++++|+.......=...+ ...+|++|.+.|++.++.+| .+..+.+.+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp-~~~e~~~~~ 466 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP-SNAEAIDGY 466 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHH
Confidence 35 4555777777777777777777777777777765443322111111 34567777777777777777 556655555
Q ss_pred HHHHH
Q 002814 720 TDMLW 724 (877)
Q Consensus 720 ~~~~~ 724 (877)
..++.
T Consensus 467 ~rc~~ 471 (539)
T KOG0548|consen 467 RRCVE 471 (539)
T ss_pred HHHHH
Confidence 55544
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=8.5e-06 Score=89.56 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhc----CCcchhHHHHHhh-cc-ccchHHHHHHHHHHHhhcCCCcchhHH
Q 002814 660 SFEDASMLLEELRLF----DNQVYGVAHGLLM-GY-RDNIWVQALSLFDEVKLMDSSTASAFY 716 (877)
Q Consensus 660 ~~~eA~~~~~~~~~~----~~~~~~~~~~l~~-~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~ 716 (877)
+..+.++-...|.+. ++...+-+..++. .+ +..+|+.|-+.+.++.+..|..+..+|
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~ 1368 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTF 1368 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhcc
Confidence 455555555555432 1222232333322 22 567888888888888888776555544
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=1.8e-07 Score=98.32 Aligned_cols=204 Identities=16% Similarity=0.030 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
..|..+...+.+.|++++|+..|..+++.. |.+..++..+...+...|++++|...|+++++..+. +..+|..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 446667788899999999999999999986 556789999999999999999999999999987543 5788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
++...|++++|++.|++..+.. |+..........+...+ +.++|...|++.... ..++... ..+.. ...|+..
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~-~~~~A~~~l~~~~~~-~~~~~~~-~~~~~--~~lg~~~ 213 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKL-DPKQAKENLKQRYEK-LDKEQWG-WNIVE--FYLGKIS 213 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccC-CHHHHHHHHHHHHhh-CCccccH-HHHHH--HHccCCC
Confidence 9999999999999999998754 44322222222233455 899999999776643 2333222 22332 2345554
Q ss_pred HHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHH
Q 002814 317 AARNLFNEMVHR---GI---DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373 (877)
Q Consensus 317 ~A~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 373 (877)
.+ +.++.+.+. .. +.....|..+...+.+.|++++|+..|++....++. |-+-+.
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~~e~~ 274 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NFVEHR 274 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hHHHHH
Confidence 43 344444432 11 113467999999999999999999999999987533 444433
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=3e-06 Score=92.52 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=85.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG-- 239 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-- 239 (877)
+...+...|+.+.+.+.+....+......+...........+...|++++|.++++++.+..+. +..++.. ...+.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~ 89 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGL 89 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHh
Confidence 3333444455555555555544433221121122222233445556666666666666554322 3333331 11111
Q ss_pred --hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 240 --RSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 240 --~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
..+..+.+.+.++.. ....|+ ......+...+...| ++++|.+.+++.++.... +...+..+..++...|+++
T Consensus 90 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 90 GDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred cccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHH
Confidence 123333333333331 111222 222233334455555 566666666665554321 3344555555555566666
Q ss_pred HHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 317 AARNLFNEMVHRGI-DQDI--FTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 317 ~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
+|...+++..+... .++. ..|..+...+...|++++|+++|++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666555554321 1111 223345555555555555555555543
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=2.8e-06 Score=95.49 Aligned_cols=415 Identities=13% Similarity=0.038 Sum_probs=253.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
+...++..|-+.++.... -...|..|...|+..-+...|.+.|++..+.+ ..|...+....+.|++..++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 467777777777765322 23568889999988888999999999998864 2367788899999999999999998844
Q ss_pred HchhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 359 EMPAKNIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (877)
Q Consensus 359 ~m~~~g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 437 (877)
..-+.... .-...|-...-.|.+.++..+|+..|+...... +-|...|..++.+|...|++..|+++|.+..... +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 33332100 011223334455778889999999999888765 5577889999999999999999999998887653 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CC
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADC------VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-------AG 504 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-------~g 504 (877)
+...-....-+.+..|.+.+|...+....... ..--..++..+...+.-.|-..+|..++++-++ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22222233345677899999998888765431 111233444444444445555555555555443 11
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCh---h---hhHHHHHHHhhhhhhhh
Q 002814 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATT---E---CTVDDVERDLGKQKESA 578 (877)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~a~~~~~~~l~~~~~~~ 578 (877)
..-+...|..+. .|..+|-... .. .|+......+..-+-..+.. | .|.+.+...+.....
T Consensus 709 ~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-- 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-- 774 (1238)
T ss_pred hhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc--
Confidence 112222332222 2333333332 11 22222222222212222222 1 011111111111000
Q ss_pred hhhhhhccCchhhhhhccch-hHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002814 579 NLDAMCSQDDKDVQEAGRTD-NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSR 657 (877)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~ 657 (877)
...| |-.++.+..... .+... .+...|+..+++.++.. .-+..+|++|+-+ +.
T Consensus 775 ----------------~~~WyNLGinylr~f~~--l~et~------~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 775 ----------------MYPWYNLGINYLRYFLL--LGETM------KDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SG 828 (1238)
T ss_pred ----------------cchHHHHhHHHHHHHHH--cCCcc------hhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hc
Confidence 1122 222333322111 11111 13457888998887632 2366778777655 88
Q ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHhhc-cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHH
Q 002814 658 CNSFEDASMLLEELRLFDNQVYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVV 736 (877)
Q Consensus 658 ~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 736 (877)
.|++.-|...|-+.+..+|...+++.|+.+. ....+.+.|...|.++..++| .|..-|-..+-+....|+.-++..+|
T Consensus 829 ~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lf 907 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILF 907 (1238)
T ss_pred cchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999999999998888888544 478899999999999999999 67777766666666778777777666
Q ss_pred HH
Q 002814 737 LE 738 (877)
Q Consensus 737 ~~ 738 (877)
..
T Consensus 908 aH 909 (1238)
T KOG1127|consen 908 AH 909 (1238)
T ss_pred Hh
Confidence 44
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.95 E-value=3.5e-05 Score=81.54 Aligned_cols=421 Identities=11% Similarity=0.121 Sum_probs=266.4
Q ss_pred HHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002814 146 LKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (877)
Q Consensus 146 l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 225 (877)
-+.++.++.+.+.|..||+.+..+ -.+++++.++.+...- |..+.+|..-|....+.++++..+.+|.+.+..-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F---P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF---PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--
Confidence 345666788889999999988766 9999999999998874 4556789999999999999999999999987653
Q ss_pred CCHHHHHHHHHHHHh-cCCHHH----HHHHHHHH-HhCCCCCC-HHHHHHHHHHH---------HcCCCCHHHHHHHHHH
Q 002814 226 NTVYAFSALISAYGR-SGYCQE----AISVFNSM-KRYNLKPN-LVTYNAVIDAC---------GKGGVDFKHVVEIFDD 289 (877)
Q Consensus 226 ~~~~~~~~li~~~~~-~g~~~~----A~~~~~~m-~~~g~~p~-~~~~~~ll~~~---------~~~g~~~~~a~~~~~~ 289 (877)
.+...|..-+..-.+ .|+... -.+.|+-. .+.|+.+- -..|+..+.-+ ..+. +.+...++|++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q-RI~~vRriYqr 162 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ-RITAVRRIYQR 162 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH-HHHHHHHHHHH
Confidence 467788887764433 233332 22333333 34454442 23455555433 2233 56778888988
Q ss_pred HHHCCCCC------CHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHH
Q 002814 290 MLRNGVQP------DRITFNSLLAVC-------SRGGLWEAARNLFNEMVH--RGIDQDIFT---------------YNT 339 (877)
Q Consensus 290 m~~~g~~p------~~~t~~~ll~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~ 339 (877)
++..-+.- |-..|..=|+.. -+...+..|+++++++.. +|+..+..+ |-.
T Consensus 163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN 242 (656)
T ss_pred HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence 88642220 112222222211 123456778888877753 243222222 433
Q ss_pred HHHHHHHcCC------HHH--HHHHHHH-chhCCCCCCHHHHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHC
Q 002814 340 LLDAICKGAQ------MDL--AFEIMAE-MPAKNISPNVVTYS-----TMIDGYAKAGR-------LDDALNMFSEMKFL 398 (877)
Q Consensus 340 li~~~~~~g~------~~~--A~~~~~~-m~~~g~~pd~~~~~-----~li~~~~~~g~-------~~~A~~~~~~m~~~ 398 (877)
+|.---..+- .-. ..-++++ |...+..|++.-.- ..-+.+...|+ .+++..+++..++.
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 4432221111 000 0011111 11223333332111 11122333343 45666667665544
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH
Q 002814 399 GIGLDRVSYNTVLSIYAKLG---RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-NL 474 (877)
Q Consensus 399 g~~pd~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 474 (877)
-..-+..+|..+.+.--..- ..+....+++++...-...-..+|..+++.--+..-++.|+.+|.++.+.+..+ ++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 33334455555443222222 255666677776654333345678888888888889999999999999988766 78
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV--VTYNSIID 552 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~ 552 (877)
..+++++.-|| .++.+-|.++|+--.+.- .-+..--...++-+...++-..|..+|++....++.|+. .+|..+|+
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 89999999887 678899999998765542 234455577888899999999999999999988777665 59999999
Q ss_pred HHhhcCChhhhHHHHHHHhhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
--..-|+++.++++.++....++
T Consensus 481 yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999988888777665554
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=6e-07 Score=84.76 Aligned_cols=202 Identities=16% Similarity=0.019 Sum_probs=139.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
...|.-+|...|++..|.+-+++.++.. +-+..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4445667777777777777777777664 4445667777777777788888888887777665 5566777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002814 452 QGKYDEVRRMFEQMKADCVS-PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (877)
.|++++|...|++....-.- --..+|..+..+..+.|+.+.|.+.|++.++.... ...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 88888888888777764211 12456777777777778888888888877776432 44556667777777788888887
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 531 LLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 531 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.++.....+. ++....-..|..-.+.|+.+.+.+.-.+....+|..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 7777766544 677777777777777777776665555555555544
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=9.3e-07 Score=83.53 Aligned_cols=193 Identities=13% Similarity=0.026 Sum_probs=85.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 278 (877)
|.-.|...|++..|++-++++++..+. +..+|..+...|.+.|..+.|.+.|++....... +-.+.|....-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg- 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG- 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC-
Confidence 333444444444444444444444322 3344444444444444444444444444442221 3334444444444444
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGV-QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (877)
.+++|.+.|++.+..-. .--..||..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 44444444444443210 111234444444444455555555555554443211 2333444444444455555555555
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
+.....+. ++..+.-..|..-...|+-+.+-+.=.++.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444433 344444444444444555444444433333
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=4.9e-06 Score=90.84 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGY-GNTV-YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 267 (877)
|+....+..+...+...|+.+.+.+.+........ ..+. .........+...|++++|.+++++..+.... |...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 34455666677777777888887777776654322 1222 22233344566788999999999988775322 344444
Q ss_pred HHHHHHH----cCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 268 AVIDACG----KGGVDFKHVVEIFDDMLRNGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (877)
Q Consensus 268 ~ll~~~~----~~g~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 342 (877)
. ...+. ..+ ....+.+.++. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 82 ~-~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 82 L-HLGAFGLGDFSG-MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred H-hHHHHHhccccc-CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 2 11222 223 34445554443 1122333 3344456677788889999999998888864 335677788888
Q ss_pred HHHHcCCHHHHHHHHHHchhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 343 AICKGAQMDLAFEIMAEMPAKNI-SPNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~-~pd~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
.|...|++++|++.+++...... .++. ..|..+...+...|++++|+.+|++....
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888999999888888776422 1222 34556777888888888888888887543
No 96
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.92 E-value=0.00028 Score=79.47 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=153.5
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS--ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY 243 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 243 (877)
....+++..|+.-....++.. |.. .|..++. .+.+.|+.++|..+++.....+.. |..+...+...|.+.|+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 345678899999998888874 222 2333333 357889999999888877666554 78899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----------
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG---------- 313 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 313 (877)
.++|..+|++.... .|+..-...+..+|.+.+ ++.+-.+.--+|-+. ++-+.+.|-++++.+...-
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~-~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREK-SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 99999999998863 577777777788888877 676555554444443 3335566666666554321
Q ss_pred CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 314 LWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMA-EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
-..-|.+.++.+.+.+ -.-+..-.......+-..|++++|.+++. ...+.-..-+...-+--++.+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1345667777777654 21122222333445567788999999984 333333333555556778888899999999999
Q ss_pred HHHHHHCC
Q 002814 392 FSEMKFLG 399 (877)
Q Consensus 392 ~~~m~~~g 399 (877)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 99988885
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.91 E-value=2.6e-05 Score=84.61 Aligned_cols=137 Identities=18% Similarity=0.372 Sum_probs=85.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 490 (877)
+.+-.....+.+|+.+++.+.... .-..-|-.+.+.|+..|+++.|.++|.+. ..++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344455667777777777666543 22334556667777777777777777653 1244567777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHH
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVER 569 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 569 (877)
++|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-... .|+. -|..|-+.|..+..++++++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 77777765543 334455566666666677777777777664432 2443 35667777776666655443
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=0.00012 Score=82.56 Aligned_cols=325 Identities=14% Similarity=0.159 Sum_probs=167.6
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
..+|+..+..++++-..+-..+-++++++++-.+...+++..+-+.|+-.-.+..+ ....+..+++-+-+. |
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyDa-~------ 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYDA-P------ 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCCc-h------
Confidence 33456666666666666666666666666665544444444444444433333322 222223333222110 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
.+......++-+++|..+|++.. -+..+.+.||.-. + +++.|.++-++.. ....|..+..+-.+.
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i---~-~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI---G-SLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh---h-hHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence 12333445555666666666543 2455555555433 2 4555555444321 345566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
|.+.+|++-|-+. .|...|...++...+.|.+++-.+.+....++.-.|.+. +.||-+|++.+++.+-.+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 6666666554222 245566666666666666666666665555544333332 35666666666665544443
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 393 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
. .||......+.+-|...|.++.|.-+|..+ .-|..|...+...|++..|...-++.-
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 2 456666666666666666666666555332 334455555555666665555444321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
+..||-.+-.+|...+.+.-|. |--.++.....-..-|+.-|-..|-++|-+.+++..
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 4556666555555554443332 111122223334445566666666666666655544
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=8.2e-05 Score=83.90 Aligned_cols=298 Identities=16% Similarity=0.237 Sum_probs=169.5
Q ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002814 213 KNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYN--LKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (877)
Q Consensus 213 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 288 (877)
+++.++.+..+.+ .|+..-+..+.++...+-..+-++++++..-.. +.-+...-|.||-...+. +...+.++.+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika--d~trVm~YI~ 1044 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA--DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc--ChHHHHHHHH
Confidence 3455555443322 345566667788888888888888888876421 111233344455444454 3566677776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC
Q 002814 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368 (877)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 368 (877)
++-.... | .+...+...+-+++|..+|++... +....+.|+. .-+..|.|.+.-++.. .
T Consensus 1045 rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~ 1103 (1666)
T KOG0985|consen 1045 RLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------E 1103 (1666)
T ss_pred HhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------C
Confidence 6644321 1 223445555667777777765432 3444444444 2355566666555543 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (877)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 448 (877)
...|+.+..+-.+.|...+|++-|-+ .-|...|.-+++...+.|.+++-.+.+....+..-.|.+. ..||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 45577777777777777777666543 2355667777777777777777766666555554344333 356667
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002814 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESA 528 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 528 (877)
|++.+++.+..+++ .-||..-...+.+-|...|.++.|.-+|. ++.-|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHH
Confidence 77777666554443 23555556666666666666666665553 334455666666666666665
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhh
Q 002814 529 VSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 529 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 563 (877)
...-++. -+..||..+-.+|...+.+..|
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH
Confidence 5443332 1334666666666555554443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=9.2e-06 Score=100.61 Aligned_cols=378 Identities=11% Similarity=-0.023 Sum_probs=233.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
++......+...|++.+|...+..+.. ... ..........+...|+++.+..+++.+.......+..........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 444455556667777766654433311 100 1111222334556788888888877663211111221222333344
Q ss_pred HcCCCCHHHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGV------QPDR--ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLL 341 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~------~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li 341 (877)
...| +++++..++......-- .+.. .....+...+...|++++|...+++..+.-...+ ....+.+.
T Consensus 420 ~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 420 QSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 5667 89999999988764310 1111 1222333456789999999999999876421112 23456677
Q ss_pred HHHHHcCCHHHHHHHHHHchhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHH
Q 002814 342 DAICKGAQMDLAFEIMAEMPAK----NI-SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNT 409 (877)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~~~~~ 409 (877)
..+...|++++|...+++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 7788899999999999887642 11 111234566677888999999999998876542 211 1 2334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HH
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSG--IRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PNLLTY-----ST 479 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ 479 (877)
+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+.+....... .....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 6667778899999999998875431 112 2334455667788999999999999887542111 011111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHH
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNV-VTYNSII 551 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li 551 (877)
.+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |...+. .+...+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 22445568999999999877554221111 112456677888999999999999988753 333322 3566777
Q ss_pred HHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 552 DAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.++.+.|+.++|...+.++++....
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 7889999999999999999987643
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=1.2e-05 Score=99.68 Aligned_cols=339 Identities=12% Similarity=0.006 Sum_probs=217.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCHH--HHHHHH
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL------KPNLV--TYNAVI 270 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--~~~~ll 270 (877)
....+...|+++.+...++.+.......+..........+...|++++|..++......-- .+... ....+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 3344556677777777776652111111222334455566788999999999988754210 11111 122223
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARNLFNEMVHR----GI-DQDIFTYNTLL 341 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li 341 (877)
..+...| ++++|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+.
T Consensus 460 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3355778 999999999998763212122 23455666778899999999999888753 11 11134556677
Q ss_pred HHHHHcCCHHHHHHHHHHchhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHH
Q 002814 342 DAICKGAQMDLAFEIMAEMPAK----NIS--P-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG--IGL--DRVSYNTV 410 (877)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p--d~~~~~~l 410 (877)
..+...|++++|.+.+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7888999999999998876542 211 1 23345566677788899999999998875431 112 23344556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIR-KDAVTY-----NALLGGYGKQGKYDEVRRMFEQMKADCVSPNL---LTYSTLI 481 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~li 481 (877)
...+...|+.++|...+++.....-. .....+ ...+..+...|+.+.|.+.+............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 67788999999999999887542101 111111 11234456689999999998776543211111 1234667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 482 DVYSKGGLYKEAMQIFREFKQA----GLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.++...|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788899999999999987653 32222 345667778899999999999999999875
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5e-05 Score=83.78 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=148.7
Q ss_pred HHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHH
Q 002814 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-G--------YGNTVYAFSALI 235 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--------~~~~~~~~~~li 235 (877)
-|...|+.+.|.+....+ ....+|..|..+|.+.+++|-|.-.+..|... | -.++ ..-....
T Consensus 737 fyvtiG~MD~AfksI~~I--------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI--------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHH--------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence 356778888887765433 23358899999999999999998888777542 1 1111 1112222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
-.....|.+++|..+|.+.++ |..|=+.|...| .+++|.++-+.--+. . =..||.....-+...++.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccH
Confidence 334577889999999988875 344445566677 889988887653332 2 234666666777778889
Q ss_pred HHHHHHHHHHHHc----------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 316 EAARNLFNEMVHR----------G---------IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 316 ~~A~~~~~~m~~~----------g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
+.|++.|++.-.. . -..|...|.-...-+-..|++|.|+.+|....+ |-.++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 9999988864211 0 012333444444444556777777777765443 55667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
+..|-.|+.++|-.+-++ .-|......|...|...|++.+|...|.+..
T Consensus 946 rI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777777777777766554 2266666777788888888888888876654
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=1.9e-05 Score=85.61 Aligned_cols=192 Identities=18% Similarity=0.326 Sum_probs=123.4
Q ss_pred HHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (877)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 420 (877)
+.+.....++.+|+.+++.+..... -..-|..+.+-|...|+++-|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566777778877777766522 22346667777888888888888776532 245567778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 500 (877)
++|.++-.+.. |-......|.+-..-+-+.|++.+|.++|-.+- .|+ .-|.+|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 88877765543 323445566666666777788888877765442 233 2466777788777777766543
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHH
Q 002814 501 KQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 501 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 566 (877)
.- ..-..|...+..-|...|++..|...|-+..+ |.+-+..|-..+.+++|.++
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 21 11234556667777778888888877765543 55566667667777766554
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=6e-07 Score=95.63 Aligned_cols=233 Identities=16% Similarity=0.120 Sum_probs=164.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
.-+.+.|++.+|.-.|+..+... +-+...|.-|...-...++-..|+..+++..+... -+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888877763 33577888888888888888888888888877653 36777777777888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHH
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFG 606 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (877)
+|++.|+.-+.... . |..+..+ ...++.+.. . .
T Consensus 371 ~Al~~L~~Wi~~~p--~---y~~l~~a-~~~~~~~~~----------------------~---------s---------- 403 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--K---YVHLVSA-GENEDFENT----------------------K---------S---------- 403 (579)
T ss_pred HHHHHHHHHHHhCc--c---chhcccc-CccccccCC----------------------c---------C----------
Confidence 88888877765421 1 1111100 001111000 0 0
Q ss_pred HHHHHHhcCCcchhhhhHhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Q 002814 607 QLVAEKAGQGKKENRCRQEILCILGVFQKMH-KLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (877)
Q Consensus 607 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~-~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l 685 (877)
...........++|-++. +.+.++|..+..+|+-.|.-.|.+++|...|+.++..+|+++..++.|
T Consensus 404 -------------~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 404 -------------FLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 000001222344555554 556456666677788888899999999999999999999999999999
Q ss_pred hhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 686 LMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 686 ~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
...+. ..+.++|++.+.+++++.| .-..+...|+-.|..+|.+++|.+.+..++..
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 77764 4578999999999999999 66677778999999999999999999887653
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=4.5e-07 Score=93.77 Aligned_cols=270 Identities=13% Similarity=0.098 Sum_probs=161.0
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA 423 (877)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 423 (877)
+.-.|++..++.-.+ .....-..+......+.++|...|+++.++. ++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445677777775555 2222212234445566777888888765543 333333 55656655555544443455555
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 424 LLVCKEMESSGIR-KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 424 ~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+.-+++....... .+.........+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444333322 23333333345677788999888887653 3677777888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 503 AGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 503 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
.+ .|.. ..-+..++.. .+.+.+|..+|+++.+. ..++..+.+.+.-++...|++++|...+.+++..++.
T Consensus 160 ~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-- 233 (290)
T PF04733_consen 160 ID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-- 233 (290)
T ss_dssp CS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC--
T ss_pred cC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC--
Confidence 53 3433 3334443332 23589999999998764 5677788888888888888888776665554432221
Q ss_pred hhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 002814 579 NLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRC 658 (877)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~ 658 (877)
|..|...++-++.+.
T Consensus 234 -----------------------------------------------------------------~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 234 -----------------------------------------------------------------DPDTLANLIVCSLHL 248 (290)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHT
T ss_pred -----------------------------------------------------------------CHHHHHHHHHHHHHh
Confidence 333555566666677
Q ss_pred CCH-HHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHh
Q 002814 659 NSF-EDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVK 705 (877)
Q Consensus 659 g~~-~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 705 (877)
|+. +.+.+++.++...+|.+..+ .++.+....|+++.
T Consensus 249 gk~~~~~~~~l~qL~~~~p~h~~~----------~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 249 GKPTEAAERYLSQLKQSNPNHPLV----------KDLAEKEAEFDRAV 286 (290)
T ss_dssp T-TCHHHHHHHHHCHHHTTTSHHH----------HHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHhCCCChHH----------HHHHHHHHHHHHHH
Confidence 776 66777888888777765443 24556666676654
No 106
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=7.2e-06 Score=85.95 Aligned_cols=210 Identities=10% Similarity=0.066 Sum_probs=150.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-..+...++.++|+.+...++..+ |.+..+++....++.+.| ++++++..+++++....+ +..+|+.....+.+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 334556778899999999999885 556677877777788887 579999999999887544 677888777667777
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CC--
Q 002814 242 GYC--QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG---GL-- 314 (877)
Q Consensus 242 g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~-- 314 (877)
|+. ++++++++++.+...+ |..+|+...-++...| +++++++.++++++.++. |...|+....++.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLG-GWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 763 6788888888876654 7888998888888888 899999999999987655 666676666555544 22
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 002814 315 --WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (877)
Q Consensus 315 --~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 381 (877)
.++......+++... +-|...|+.+...+... ++..+|.+.+.+....++. +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 245666666666653 34667777777777662 3445677777776554332 55666667777764
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00025 Score=75.31 Aligned_cols=424 Identities=11% Similarity=0.136 Sum_probs=223.7
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
|.+...|..||+-+... -.+++++.++++... ++.....|..-|..-.+..+++....+|.++...- -+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 55677888888876665 888999999988875 34467788888888888889999999998887632 356677776
Q ss_pred HHHHHcCCCCH----HHHHHHHHHHH-HCCCCCCHH-HHHHHHHH---------HHhCCCHHHHHHHHHHHHHcCCCCCH
Q 002814 270 IDACGKGGVDF----KHVVEIFDDML-RNGVQPDRI-TFNSLLAV---------CSRGGLWEAARNLFNEMVHRGIDQDI 334 (877)
Q Consensus 270 l~~~~~~g~~~----~~a~~~~~~m~-~~g~~p~~~-t~~~ll~~---------~~~~g~~~~A~~~~~~m~~~g~~~~~ 334 (877)
|.-..+..... +...+.|+-.+ +.|+.+-.. .|+..+.. |....+++..+++|++++..-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 66543322122 22233344333 345433322 24444332 22334556666666666653211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHH-------
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF--LGIGLDRV------- 405 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~------- 405 (877)
..|+-... ++..+ |..|-.-+|. -+...+-.|..+++++.. .|+..+..
T Consensus 173 kLW~DY~~-------fE~~I-------------N~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 173 KLWKDYEA-------FEQEI-------------NIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHHHH-------HHHHH-------------HHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 22221110 11100 1111111110 011122233333333321 11111111
Q ss_pred --------HHHHHHHHHHHcC------CH--HHHHHHHHH-HHHCCCCCCHHHHHH-----HHHHHHHcCC-------HH
Q 002814 406 --------SYNTVLSIYAKLG------RF--EEALLVCKE-MESSGIRKDAVTYNA-----LLGGYGKQGK-------YD 456 (877)
Q Consensus 406 --------~~~~li~~~~~~g------~~--~~A~~~~~~-m~~~g~~~~~~~~~~-----li~~~~~~g~-------~~ 456 (877)
.|..+|.---..+ .. ....-++++ |.-.++.|++.-..+ .-+.+...|+ -+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 1222222111100 00 011111111 112222232221111 1112333333 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (877)
++..+++..++.-..-+..+|..+.+-=-.. ...+.....++++...-..--..+|-.++..-.+..-++.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666655432233444444443321111 1355666777777654322234567778888888888999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHH
Q 002814 534 EMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK 612 (877)
Q Consensus 534 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (877)
++++.+..+ .+.++.+++.-+|. ++.+-|.++++-.|+.+.+.+.+ ....+..+..++
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~y-----------------v~~YldfL~~lN--- 449 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEY-----------------VLKYLDFLSHLN--- 449 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHH-----------------HHHHHHHHHHhC---
Confidence 999988777 66688888888765 56778888888888887776522 233333333332
Q ss_pred hcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002814 613 AGQGKKENRCRQEILCILGVFQKMHKLKIKPNV--VTFSAILNACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 613 ~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (877)
+-..|..+|++.+..++.||. .+|..+|+-=+.-|++..+.++-+.+.
T Consensus 450 ------------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 450 ------------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred ------------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 122366799998887666665 458888877778888888877766654
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=2.8e-06 Score=90.65 Aligned_cols=252 Identities=15% Similarity=0.096 Sum_probs=134.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
.+.+.|++.+|.-.|+.+++..+. ++.+|..|......+++-..|+..+.++.+.... |..+.-.|.-.|...| .-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg-~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG-LQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh-hHH
Confidence 355666666666666666665433 5666666666666666666666666666664322 4445555555566555 445
Q ss_pred HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 282 HVVEIFDDMLRNGVQ--------PDRITFNSLLAVCSRGGLWEAARNLFNEMV-HRGIDQDIFTYNTLLDAICKGAQMDL 352 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~ 352 (877)
.|++.+++-++..++ .+..+-.. +.+.....+....++|-++. ..+...|..++..|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 566666555443210 00000000 11112222333444444433 33334566666666666666667777
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 353 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
|++.|+..+..... |...||-|...++...+.++|+..|.+.++. +|+- .+...|.-.|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 77777666654322 5566666666666666677777777766655 4442 233334445666667766666665433
Q ss_pred HC---------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 432 SS---------GIRKDAVTYNALLGGYGKQGKYDEVRRM 461 (877)
Q Consensus 432 ~~---------g~~~~~~~~~~li~~~~~~g~~~~A~~~ 461 (877)
.. +..++...|.+|=.++.-.++.|.+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 0112345666665566666666644443
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=1.6e-05 Score=92.69 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=155.7
Q ss_pred hhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCC--ChHHHHHHHHHHHHhcCChHHHHHHHH
Q 002814 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKN--DQGKLASAMISILGRLGKVDLAKNIFE 217 (877)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (877)
+..++..+.....+-+.-.|...+....+.++.++|++++++++..-.... +-..+|.++++....-|.-+...++|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344455555444444455666677777788888888888888886532211 123467777777777777788888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 002814 218 TALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (877)
Q Consensus 218 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p 297 (877)
++.+. -....+|..|...|.+.+++++|.++|+.|.+. +......|...+..+.+.. +-+.|..++.++++.=.+.
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~n-e~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQN-EAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhccc-HHHHHHHHHHHHHhhcchh
Confidence 88764 123457788888888888888888888888753 2246677888888888877 7788888888887642111
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC
Q 002814 298 -DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368 (877)
Q Consensus 298 -~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 368 (877)
........+..-.+.|+.+.++.+|+..+... +--...|+.++++-.+.|+.+.++.+|++....++.+-
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 22334444555567888888888888877652 33567788888888888888888888888887766543
No 110
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=3.5e-05 Score=80.87 Aligned_cols=207 Identities=10% Similarity=0.065 Sum_probs=144.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC--
Q 002814 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD-- 279 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-- 279 (877)
+...++.++|+.+.++++...+. +..+|+....++...| .++++++.++++.+...+ +..+|+...-.+.+.+ .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~-~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG-PDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC-chh
Confidence 44456778899999999886543 5668887777777777 679999999999986554 6667876665565666 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH----HH
Q 002814 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG---AQM----DL 352 (877)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~ 352 (877)
.++++.+++++++...+ |..+|+....++...|+++++++.++++++.+.. |..+|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 36788888888877544 6778888888888889999999999999987644 667777766665554 222 35
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKA----GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416 (877)
Q Consensus 353 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 416 (877)
+++...++...... |...|+.+...+... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 202 el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 66666566655332 667777777777662 33455767666655543 3355566666666664
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=1.6e-06 Score=89.61 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=65.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCC
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY----GKQGK 454 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~ 454 (877)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+..++ .....
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHHHHHHHHHHhCchh
Confidence 33345555555444321 233344444455555555555555555554432 22211 1122221 11224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHH
Q 002814 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV-ESAVSLLD 533 (877)
Q Consensus 455 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 533 (877)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+. -+..+...+|.+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555555443 344555555555555555555555555555544332 2344444455555555554 34445555
Q ss_pred HHHH
Q 002814 534 EMTK 537 (877)
Q Consensus 534 ~m~~ 537 (877)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5544
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=2.3e-05 Score=91.37 Aligned_cols=199 Identities=14% Similarity=0.073 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRN-GVQP---DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNT 339 (877)
Q Consensus 264 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 339 (877)
..|-..|.-....+ +.++|.+++++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.- .-..+|..
T Consensus 1459 i~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 33444444444444 445555555444432 0100 01223333333333344444444555444431 11233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD---RVSYNTVLSIYAK 416 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~ 416 (877)
|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.+..+. -|. .....-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 444555555555555555554443 1123344444444444444444444444444433 121 1112222333344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 469 (877)
.|+.+.+..+|+..+... +.-...|+..|++-.+.|+.+.++.+|+++.+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 444444444444444332 3334444444444444444444444444444443
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.0001 Score=72.08 Aligned_cols=261 Identities=16% Similarity=0.122 Sum_probs=131.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
+....+.+..+|-...++..|-.+|+..-..- |.....----...+-+.+.+.+|.++...|... ++...-..-
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lq 116 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQ 116 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHH
Confidence 44445556666666677777777777665542 222222122244555666777777776666432 111111111
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002814 235 ISA--YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN-GVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 235 i~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~ 311 (877)
+.+ ....+++..+..+.++....| +..+.+...-...+.| +++.|.+-|+...+- |.. ....|+..+. ..+
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg-qyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~ 190 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG-QYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYS 190 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc-cHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHh
Confidence 111 223456666666666655321 3333333333345666 677777777776654 333 3445554443 334
Q ss_pred CCCHHHHHHHHHHHHHcCCC-------------CCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 312 GGLWEAARNLFNEMVHRGID-------------QDIF---------------TYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~-------------~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
.|+++.|.+...+++++|+. +|+. .+|.-...+.+.|+++.|.+.+-.|.-+
T Consensus 191 ~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 191 SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 56777777777777666531 1111 1122222344566666666666666532
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 364 -NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE 429 (877)
Q Consensus 364 -g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (877)
....|.+|...+.-.= ..+++.+..+-+.-+.... +-...||..++-.||+..-++.|-.++.+
T Consensus 271 aE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 271 AEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 1234555554433211 1233333444344444332 23456666666667776666666666543
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.4e-07 Score=61.94 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002814 639 LKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 639 ~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (877)
.|+.||.+||++|+++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3799999999999999999999999999999983
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.7e-07 Score=61.47 Aligned_cols=32 Identities=50% Similarity=0.932 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 329 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
|+.||.++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=8.5e-06 Score=89.24 Aligned_cols=218 Identities=13% Similarity=0.029 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
.-..+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+++...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677788888888888888654 4667788888888888888888877774 788888888888777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 495 (877)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +-...+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 767788888887665421 22223333344788888888888776653 3356778778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 496 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
.|.......+ -+...||.+-.+|.+.|+..+|...+++..+.+ .-+...|...+-...+.|.++.|++.+.+.+...
T Consensus 541 aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8888876432 256688888888888888888888888888765 3344566666666678888888888777766543
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=3.1e-05 Score=78.84 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV--YAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ 233 (877)
++.+......+.+.|++++|+..|+.++...+..+.....+..+..++.+.|++++|...|+++++..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 4455556667777777777777777777664322222235566677777777777777777777665332111 23444
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHh
Q 002814 234 LISAYGRS--------GYCQEAISVFNSMKR 256 (877)
Q Consensus 234 li~~~~~~--------g~~~~A~~~~~~m~~ 256 (877)
+..++.+. |+.++|++.|+++.+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 44444433 445555555555544
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=6.4e-05 Score=87.57 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY 689 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 689 (877)
+.++.-|-.-|....+++++..+++.+++.++.+....+.++..|
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 334445555666667777888888877777777777776665544
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=2.1e-05 Score=86.35 Aligned_cols=214 Identities=14% Similarity=0.071 Sum_probs=176.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 382 (877)
..+...+.+.|-...|..+|+++. .|...|.+|+..|+.++|..+..+..++ +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456677888999999999998764 4677899999999999999999888774 68999999999988888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (877)
--+++|.++++..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8899999998865432 11222222344789999999999877765 567889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 463 EQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 463 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
...... -+-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.+|.+
T Consensus 543 ~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 998875 23357899999999999999999999999999876 34666777777788899999999999999875
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=5e-06 Score=76.74 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=94.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 631 GVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 631 ~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
.+|++.++ +.|+. +..+..++...|++++|...|+.+...+|.+..+..++...+ ..|++++|+..|+++++++|
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 47777776 66775 446788889999999999999999999999988887776554 78999999999999999999
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhc
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (877)
.+..++..++.++...|++++|...+..+.....
T Consensus 90 -~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 90 -SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999999877654
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=0.00021 Score=83.34 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=99.0
Q ss_pred CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002814 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (877)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 268 (877)
.+.+..++..|+..+...+++++|.++.+..++..+. ....|-.+...+.+.++.+++..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 3455666677777777777777777777766654322 233333343455566654444433 2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002814 269 VIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 269 ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 348 (877)
++....... ++..+..++..|... .-+...+..|..+|.+.|+.++|..+|+++++.. +-|..+.|.+...|...
T Consensus 89 ~l~~~~~~~-~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 LIDSFSQNL-KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhccccc-chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 222223333 343333333344432 2234466667777777777777777777777765 33667777777777777
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
++++|++++.+.... |...+++.++.+++.++...
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 777777776665543 45555666666666666654
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.011 Score=67.06 Aligned_cols=219 Identities=15% Similarity=0.132 Sum_probs=133.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA--CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
...+++.+|+...+++.+. .||. .|..++.+ ..+.| ..++|..+++.....+.. |..|...+-.+|...++.+
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLG-KGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 3567888888888887763 2443 33444444 35667 778888777777665544 7788888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC--------
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR-------- 384 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-------- 384 (877)
+|..+|++.... .|+......+..+|.+.+.+.+ |+++++...+ +...+-++++.+.+.-.
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccc
Confidence 888888888775 3567777777788888777654 5555554333 55566666666654321
Q ss_pred --HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 385 --LDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCK-EMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 385 --~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
..-|.+.++.+.+.+-+.. ..-...-...+...|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234444555544431111 1111122233445667777777773 33333333444555556667777777777777
Q ss_pred HHHHHHHCC
Q 002814 461 MFEQMKADC 469 (877)
Q Consensus 461 ~~~~m~~~g 469 (877)
+-.++...|
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 777777664
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=4.7e-05 Score=77.50 Aligned_cols=185 Identities=13% Similarity=0.024 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 002814 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV---VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR--VSY 407 (877)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~ 407 (877)
....+..+...+.+.|++++|...|+++...... +. .++..+..+|.+.|++++|+..++++.+..-.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4555666666666666676666666666554211 11 34555566666666666666666666654211011 133
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 408 NTVLSIYAKL--------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 408 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
..+..++.+. |+.++|.+.|+.+.+.. +.+...+.++..... ... ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHH
Confidence 3344444433 44555555555555432 222222221111100 000 000 00113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQAGL--KADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+...|.+.|++++|...|++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445566666666666666655421 11234555666666666666666666665544
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.00014 Score=84.17 Aligned_cols=164 Identities=8% Similarity=0.004 Sum_probs=126.7
Q ss_pred CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002814 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (877)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 268 (877)
.+.+...+..|..+....|++++|..+++.+.+..+. +..++..++..+.+.+++++|+..+++....... +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 3555678888999999999999999999999887443 6788888999999999999999999999886543 5666777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002814 269 VIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 269 ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 348 (877)
+..++.+.| ++++|..+|+++...+. -+..++..+...+.+.|+.++|...|++..+.- .+...-|+.++.
T Consensus 160 ~a~~l~~~g-~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------ 230 (694)
T PRK15179 160 EAKSWDEIG-QSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------
Confidence 777788899 99999999999998433 257888889999999999999999999998752 234455555443
Q ss_pred CHHHHHHHHHHchhC
Q 002814 349 QMDLAFEIMAEMPAK 363 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~ 363 (877)
++..-...++++.-.
T Consensus 231 ~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 231 DLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHHHcCcc
Confidence 233334455555443
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=0.00014 Score=70.79 Aligned_cols=160 Identities=17% Similarity=0.116 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 452 (877)
..+-..+...|+-+....+........ .-|.......+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444555666666666666655543321 3455555567777777777777777777777655 67777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002814 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 453 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (877)
|++++|..-|.+..+.. .-+...+|.|...|.-.|+.+.|..++......+. -|...-..+.-.....|++++|.++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777777652 33556667777777777777777777777766542 36666666666777777777777765
Q ss_pred HHHH
Q 002814 533 DEMT 536 (877)
Q Consensus 533 ~~m~ 536 (877)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5443
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=0.00012 Score=71.62 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=83.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 002814 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY-SKGGL--YKEA 493 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-~~~g~--~~~A 493 (877)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456667776777666655 6677777777777777777777777777777653 33566666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7787777776533 6677777777777788888888888887765
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.00054 Score=72.46 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=107.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 455 (877)
.-.+...|++++|+..+..++..- +-|........+.+.+.++.++|.+.++++.... +........+.++|.+.|+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 334556788888888888877662 3344455556678888888888888888888764 22366667778888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
.+|+++++..... .+-|...|..|..+|...|+..++..-..+ +|...|++++|+..+...
T Consensus 391 ~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 8888888887765 455788888888888888887777655433 355678888888888887
Q ss_pred HHCCCCCCHHHH
Q 002814 536 TKEGIRPNVVTY 547 (877)
Q Consensus 536 ~~~g~~p~~~~~ 547 (877)
.+. .+.+..+|
T Consensus 452 ~~~-~~~~~~~~ 462 (484)
T COG4783 452 SQQ-VKLGFPDW 462 (484)
T ss_pred HHh-ccCCcHHH
Confidence 765 33444444
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=0.00011 Score=71.87 Aligned_cols=119 Identities=12% Similarity=0.147 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 002814 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-YAKLGR--FEEA 423 (877)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~-~~~~g~--~~~A 423 (877)
.++.++++..++...+.+. .|...|..+...|...|++++|...|++..+.. +-+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3445555555555554432 256666666666666666666666666666553 3345555555554 345555 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 424 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666655 445666666666666666666666666666654
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00051 Score=66.75 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=59.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----c
Q 002814 307 AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----A 382 (877)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~ 382 (877)
..|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 44555566666655544411 2223333334444555556666666666553 244455544444443 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 434 (877)
+++.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++.....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3455555555555543 24555555555555555555555555555555444
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00016 Score=70.33 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
+.+..+ ..+...+.-.|+-+....+....... ...+....+.++....+.|++.+|+..|++..... .+|..+|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 444445 55666677777777777777765443 23356677778888888888888888888887643 3477888888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 349 (877)
..+|.+.| +++.|..-|.+..+.-.. +...++.|.-.|.-.|+++.|..++......+ .-|..+-..|.-.....|+
T Consensus 141 gaaldq~G-r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLG-RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHcc-ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCC
Confidence 88888888 888888888888876333 55667777777778888888888888877654 2367777778888888888
Q ss_pred HHHHHHHHHHchh
Q 002814 350 MDLAFEIMAEMPA 362 (877)
Q Consensus 350 ~~~A~~~~~~m~~ 362 (877)
+++|.++...-..
T Consensus 218 ~~~A~~i~~~e~~ 230 (257)
T COG5010 218 FREAEDIAVQELL 230 (257)
T ss_pred hHHHHhhcccccc
Confidence 8888877665443
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.0001 Score=85.37 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=125.4
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
+..++.+..|.....+.|++++|..+++.++... |++..+...++.++.+.+++++|...+++.+...+. +....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 3457778889999999999999999999999985 677788999999999999999999999999988654 788889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL 306 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 306 (877)
.+..++.+.|++++|+++|+++...+.. +..++..+..++...| +.++|...|++.++. ..+....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRG-ALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999999999999999984432 4788999999999999 999999999999875 233445555544
No 132
>smart00463 SMR Small MutS-related domain.
Probab=98.24 E-value=3.3e-06 Score=68.82 Aligned_cols=76 Identities=30% Similarity=0.349 Sum_probs=63.0
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCceE
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRF 832 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~~ 832 (877)
.+|||.++.++|..++..|+.+.+.. + .+..+.|+||.|+|+. .|.+.+++.|..++...+-+|..+ .|.|++
T Consensus 3 ~lDLHG~~~~eA~~~l~~~l~~~~~~---~--~~~~~~II~G~G~~s~-~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 3 SLDLHGLTVEEALTALDKFLNNARLK---G--LEQKLVIITGKGKHSL-GGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred eEEcCCCCHHHHHHHHHHHHHHHHHc---C--CCceEEEEEcccCCCc-cchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 58999999999999999999887753 1 1267999999999986 467788999999999877777665 899998
Q ss_pred Eec
Q 002814 833 IST 835 (877)
Q Consensus 833 ~~~ 835 (877)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 764
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=4.6e-05 Score=70.35 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
|+.+......+.+.|++++|+..|.+++... |.+..++..+..++.+.|++++|...|+++....+ .+...+..+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg 99 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHH
Confidence 4444456667778888888888888888775 44566778888888888888888888888887654 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
.++.+.|++++|+..|+...+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888888764
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00096 Score=64.90 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=46.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 490 (877)
.+..+++-|.+.+++|.+- .+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+.+..++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3444444444444444432 133333333333322 23345555555555443 344555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
++|..++++...+... +..+...+|.+-...|.
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 5555555555544322 34444334333333443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0024 Score=61.69 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 279 DFKHVVEIFDDMLR---NG-VQPDRIT-FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (877)
Q Consensus 279 ~~~~a~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 353 (877)
+.++..+++.+++. .| ..++..+ |..++-+....|+.+.|..+++.+.+.- +-+..+-..-...+--.|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 56777777777763 24 4555544 4555566667888888888888887762 32333333333334557888888
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (877)
Q Consensus 354 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (877)
+++|+.+.+.+ +.|.+++---+...-..|+--+|++.+.+..+. +.-|...|.-+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888775 347777777777777778877888877777665 4668888888888888888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC
Q 002814 434 GIRKDAVTYNALLGGYGKQG---KYDEVRRMFEQMKAD 468 (877)
Q Consensus 434 g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 468 (877)
. +-+...+..+.+.+.-.| +.+-|.++|.+.++.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4 444555555555443333 345566666666554
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=4.3e-05 Score=70.05 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=91.6
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 632 VFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 632 ~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
+|++.+. ..|+. .....++..+...|++++|.+.|+.+...+|.+..+...+...+ ..+++++|...++++++.+|
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666665 56644 44667888899999999999999999998998877777665554 67899999999999999998
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+..++..++.+|...|++++|..++..+.+..
T Consensus 83 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 -DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 678889999999999999999999998877654
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.00079 Score=71.23 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIY 414 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~ 414 (877)
......-.+...|++++|+..++.+... .+-|...+....+.+.+.|+.++|.+.++++... .|+ ......+..+|
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 3344445566789999999999998876 3346777778889999999999999999999987 555 66677888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 494 (877)
.+.|+..+|+.+++...... +.|...|..|..+|...|+..++..-..+ +|...|++++|.
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~ 445 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAI 445 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHH
Confidence 99999999999999988776 78899999999999999999888766555 456689999999
Q ss_pred HHHHHHHHCCCCCCHHHH
Q 002814 495 QIFREFKQAGLKADVVLY 512 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~ 512 (877)
..+....+.. +.+..+|
T Consensus 446 ~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 446 IFLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHHhc-cCCcHHH
Confidence 9998887753 3344443
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.02 E-value=4.6e-05 Score=69.02 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
.-++..-+...|++++|.++|+-+...||.+...+.++.+.+ ..|++++|+..+..+..++| +++..+..++.+|...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 445667778899999999999999999999998888887776 68999999999999999999 7888899999999999
Q ss_pred CchhhHHHHHHHhhhhh
Q 002814 727 GQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 727 g~~~~A~~~~~~~~~~~ 743 (877)
|+.++|++-|+.++...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.00041 Score=63.50 Aligned_cols=97 Identities=24% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 518 (877)
......+...+.+.|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+|+...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555666666666666666665542 2355566666666666666666666666665544 2345555556666
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 002814 519 LCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~ 537 (877)
|...|++++|+..|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0078 Score=58.33 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHccc---cCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 170 GEWSKAIQCFAFAVKREE---RKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 246 (877)
.+.++.++++..++.... .-++.-.+|..++-+....|+.+.|...++.+..+- +-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345666666666553221 113334456666666677777777777777766542 2232222222223445677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 326 (877)
|+++|+.+.+.+.. |.++|-.-+......| .--+|++-+.+..+. +.-|...|.-|...|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~G-K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQG-KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcC-CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 77777777765532 5566665555555555 334555555555544 34467777777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhC
Q 002814 327 HRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAK 363 (877)
Q Consensus 327 ~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 363 (877)
-.. +.+...+..+.+.+.-.| +++.|.+.|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 542 223444444555443333 445566666666554
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00013 Score=72.23 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=91.4
Q ss_pred hHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHH
Q 002814 623 RQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSL 700 (877)
Q Consensus 623 ~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~ 700 (877)
.++|++|++.|.+.++ +.| |.+.|+.=.-||++.|.++.|.+-.+.++.+||......-.+.+.+ ..|++++|++.
T Consensus 94 ~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred hhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3589999999999998 777 6777888999999999999999999999999998877777776655 68899999999
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHhcCchh
Q 002814 701 FDEVKLMDSSTASAFYNALTDMLWHFGQKR 730 (877)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 730 (877)
|+++++++| .|..+...|-++--++++..
T Consensus 172 ykKaLeldP-~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDP-DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCC-CcHHHHHHHHHHHHHhcCCC
Confidence 999999999 78888888888777766655
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00048 Score=70.92 Aligned_cols=289 Identities=12% Similarity=0.038 Sum_probs=141.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 456 (877)
..+.+..++.+|++.+...++.. +-+..-|..-...+...|++++|.--.+.-++.. ......+.-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 34555666667777777666653 2334444444555555666666655554443321 112223333333444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYSALID-ALCKNGLVESAVSLLDE 534 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~-~~~~~g~~~~A~~~~~~ 534 (877)
+|.+.++. ...| ....|+..++....... +|...+|..+-. ++.-.|++++|..+--.
T Consensus 135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444431 1111 11122222222222211 234455554433 44557777777766555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHH-h
Q 002814 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK-A 613 (877)
Q Consensus 535 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 613 (877)
.++.. ..+......--.++.-.++.+.|+..+.++|...|+......+. .+..++...+ .
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~------------------~~~k~le~~k~~ 255 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS------------------MMPKKLEVKKER 255 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh------------------hhHHHHHHHHhh
Confidence 55431 11222222222234556677777777777777777643221110 0001110000 0
Q ss_pred cCCcchhhhhHhHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-
Q 002814 614 GQGKKENRCRQEILCILGVFQKMHKL---KIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY- 689 (877)
Q Consensus 614 g~~~~~~~~~~~~~~A~~~~~~m~~~---g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~- 689 (877)
| .+....|.+.+|.+.|.+.+.. .++|+...|.....+..+.|+..+|+.--+.+.++|+.-...+..-...+
T Consensus 256 g---N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 G---NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred h---hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 0 0011234667777788777641 23344445666666677788888888887777777765333221111111
Q ss_pred ccchHHHHHHHHHHHhhcCC
Q 002814 690 RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~ 709 (877)
..+.|++|.+-++++.+.+.
T Consensus 333 ~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34678888888888776654
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.79 E-value=0.00064 Score=72.84 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (877)
Q Consensus 341 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 420 (877)
+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..... +-|...+..-...|.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 333344445555555555555442 22 22234444444455555555555544331 22333444444445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
+.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555442 233445555555555555555555555443
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.76 E-value=4.5e-05 Score=50.73 Aligned_cols=33 Identities=52% Similarity=0.920 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (877)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0066 Score=62.84 Aligned_cols=169 Identities=17% Similarity=0.085 Sum_probs=109.5
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---
Q 002814 402 LDRVSYNTVL-SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTY--- 477 (877)
Q Consensus 402 pd~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 477 (877)
|.-.++..+- ..+.-.|++++|..+--.+.+.+ ..+......-..++--.++.+.|...|++.+.. .|+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH
Confidence 3334444443 35567788888888877777654 223322222223445577888999999888765 3443222
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 002814 478 ----------STLIDVYSKGGLYKEAMQIFREFKQAG---LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544 (877)
Q Consensus 478 ----------~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 544 (877)
..-..-..+.|++.+|.+.|.+.+... .+++...|........+.|+.++|+.-.++..+. .+..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~sy 320 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSY 320 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHH
Confidence 112233467899999999999988643 4556667777777888899999999988888763 3222
Q ss_pred H-HHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 545 V-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 545 ~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
. .|..-..++.-.+++++|++.++++++...
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 333444456667888888888888777543
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.0019 Score=59.82 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 002814 417 LGRFEEALLVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL--LTYSTLIDVYSKGGLYK 491 (877)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~ 491 (877)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. ...-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555666666666665543 222 122223345555666666666666666655322211 22333455555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002814 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (877)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (877)
+|+..++...... .....+....+.|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666665432221 2334455555666666666666666654
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.0011 Score=58.80 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSAL 234 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l 234 (877)
+.+..++..+.+.|++++|.+.|..++...+..+.....+..+..++.+.|+++.|...|+.+....... ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4455566777788888888888888877653322223456667888888888888888888887653221 24567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g 258 (877)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 778888888888888888887754
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.68 E-value=5.9e-05 Score=50.13 Aligned_cols=33 Identities=55% Similarity=0.863 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 403 (877)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.67 E-value=0.0014 Score=70.28 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 486 (877)
..+|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++.++. .+-|...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 3444555555666777777777766543 33 2334556666666666777777766654 23345555555566667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.++++.|+++.+++.+.. +-+-.+|..|..+|.+.|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777776653 2244577777777777777777777776664
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.66 E-value=6.5e-05 Score=49.57 Aligned_cols=33 Identities=39% Similarity=0.699 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002814 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 542 (877)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 542 (877)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0013 Score=60.85 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~ 246 (877)
.+++..+...++.+.......+-.....-.+...+...|++++|...|+.+......++ ..+...|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555544322111112222334445555555555555555554432221 1233334444555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD 289 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~ 289 (877)
|+..++...... .....+....+++.+.| +.++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g-~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQG-DYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 555554432211 12223334444455555 55555555443
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.53 E-value=0.00013 Score=48.19 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 261 (877)
+|+.+|++|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55555555555555555555555555555544
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.027 Score=56.99 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
.....+.+.|++++|++.|+.++...+..+......-.++.++.+.+++++|...|++.++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344455566777777777777666543322222223445566666677777777776666653
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0018 Score=69.78 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=78.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 242 (877)
...+...|++++|++.|..++... +.+..++..+..+|.+.|++++|+..+++++..... +..+|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 455667888999999999988875 455667888888888899999999999888886543 6778888888888889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
++++|+..|++..+. .|+.......+
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999998888874 35444443333
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.0011 Score=71.31 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=59.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhh
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRG 731 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 731 (877)
..+...|++++|.++|+++++.+|.+..+..++...+ ..|++++|+..++++++++| .+...|..++.+|..+|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 3444556777777777777766666665555443333 55677777777777777777 556667777777777777777
Q ss_pred HHHHHHHhhhhh
Q 002814 732 AQLVVLEGKRRQ 743 (877)
Q Consensus 732 A~~~~~~~~~~~ 743 (877)
|...+.+++...
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 777777666543
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.50 E-value=0.011 Score=61.79 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=81.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-CChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhcc
Q 002814 518 ALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGR 596 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (877)
.|...|++..|-+++.++ ...|... |++++|++.+.++++.+.....-. ....
T Consensus 103 ~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~-----------~a~~ 156 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH-----------SAAE 156 (282)
T ss_dssp HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH-----------HHHH
T ss_pred HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh-----------hHHH
Confidence 456666666665555544 4466666 889999999988888755432000 0012
Q ss_pred chhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHcCCCHHHHHHHHHH
Q 002814 597 TDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK-----PNVV-TFSAILNACSRCNSFEDASMLLEE 670 (877)
Q Consensus 597 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~-----Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~ 670 (877)
++..+..++.+ .+++++|+++|++....-.. .+.. .|...+-++-..|+...|.+.|++
T Consensus 157 ~~~~~A~l~~~---------------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 157 CLLKAADLYAR---------------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHHH---------------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22233333332 23899999999998764322 2222 122223345567899999999999
Q ss_pred HHhcCCc-----chhHHHHHhhccccc---hHHHHHHHHHHHhhcCC
Q 002814 671 LRLFDNQ-----VYGVAHGLLMGYRDN---IWVQALSLFDEVKLMDS 709 (877)
Q Consensus 671 ~~~~~~~-----~~~~~~~l~~~~~~~---~~~~A~~~~~~~~~~~~ 709 (877)
....+|. .+.++.+++.++..+ .+.+|+.-|+++.++|+
T Consensus 222 ~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 222 YCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 8876653 233444555554332 45566666665555544
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.48 E-value=0.00091 Score=56.15 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
+..++..+...|++++|.+.|+.+.+..+....+...+...+ ..+++++|.+.++++....+ .+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 455677777889999999999998887777654444443333 56889999999999988888 5567888999999999
Q ss_pred CchhhHHHHHHHhhh
Q 002814 727 GQKRGAQLVVLEGKR 741 (877)
Q Consensus 727 g~~~~A~~~~~~~~~ 741 (877)
|++++|..++..+..
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999988877653
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0012 Score=65.80 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 242 (877)
...+.+.++|++|+..|..++... |.++..|..-..+|.+.|.++.|++-.+.++..+.. ...+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccC
Confidence 445667788888888888888875 566677888888888888888888888888775422 3668888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
++++|++.|.+.++ +.|+..+|-.=|..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 88888888888876 56776666554443
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.45 E-value=0.0025 Score=68.60 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 002814 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHR--GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (877)
Q Consensus 297 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 374 (877)
........+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..++++++++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34555555566665556666666666665543 1111223344666666666666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL 417 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 417 (877)
||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666665555555555555555544444
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.21 Score=55.28 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 379 (877)
..|+.+...++....+++|.+.|..-.. -...+.+|.+..++++-..+...+.+ |....-.|.+++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHH
Confidence 3455555555555556665555543221 12244455555555554444444433 344445556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 380 AKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE 429 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (877)
...|.-++|.+.|-+.- .| ...+..|...+++.+|.++-++
T Consensus 863 ~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666665553321 11 1234455555666666655444
No 161
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.002 Score=69.38 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
+.+.+.+..+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444455555555555555555555555555433 111112333455555666666666666655555555556666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666665555555444444444444444444433
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.024 Score=59.15 Aligned_cols=172 Identities=14% Similarity=0.195 Sum_probs=80.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCC---ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKN---DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
.|......|...++|++|.+.|.++........ .....|...+.+|.+. ++++|.+.++++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~-------------- 101 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI-------------- 101 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH--------------
Confidence 455566677777888888888877654322111 1122333333333333 5555555544443
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHH
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG-GVDFKHVVEIFDDMLRN----GVQ-PDRITFNSLLAV 308 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~~a~~~~~~m~~~----g~~-p~~~t~~~ll~~ 308 (877)
..|...|++..|-.++.++-+ .|-.. | ++++|++.|++.... |-. --..++..+...
T Consensus 102 -~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 102 -EIYREAGRFSQAAKCLKELAE---------------IYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHCT-HHHHHHHHHHHHH---------------HHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHhcCcHHHHHHHHHHHHH---------------HHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 455666666666555554432 34444 5 666777666666532 100 001234445555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 309 CSRGGLWEAARNLFNEMVHRGIDQD-----IF-TYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~~~-----~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
+.+.|++++|.++|+++...-...+ +. .+...+-++...|+...|.+.|++..
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666554321111 11 11222223444555555555555544
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0028 Score=53.02 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=8.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 002814 410 VLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m 430 (877)
+...+...|++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333443333333
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.39 E-value=0.0079 Score=57.54 Aligned_cols=90 Identities=23% Similarity=0.216 Sum_probs=53.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+...|++++|+..|+.++......+.....+..+..++.+.|++++|...++++++.... +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 34445566666777777777777776554322222345666666677777777777777776664322 45555555666
Q ss_pred HHhcCCHHHHH
Q 002814 238 YGRSGYCQEAI 248 (877)
Q Consensus 238 ~~~~g~~~~A~ 248 (877)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 66666544433
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.0071 Score=53.12 Aligned_cols=109 Identities=22% Similarity=0.135 Sum_probs=74.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYG 239 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~ 239 (877)
+...+-..|+.++|+.+|+.++..+.........+..+...|...|++++|..++++.....+. .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4556667888999999999888876544444557777888888899999999999888765322 12223333444667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
..|+.++|++++-.... ++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 78888888888876654 34446666555554
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.38 E-value=0.00017 Score=46.34 Aligned_cols=29 Identities=41% Similarity=0.778 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (877)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0052 Score=63.28 Aligned_cols=122 Identities=12% Similarity=-0.023 Sum_probs=77.5
Q ss_pred hhhhHhHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH----hcCCcchhH--HHHHhhc
Q 002814 620 NRCRQEILCILGVFQKM----HKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELR----LFDNQVYGV--AHGLLMG 688 (877)
Q Consensus 620 ~~~~~~~~~A~~~~~~m----~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~----~~~~~~~~~--~~~l~~~ 688 (877)
+...|+++.|+..-+.- ++.|-+. ....+..|.+++.-.|+++.|.+.|+... ++....... .+.+...
T Consensus 205 yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 44455777777654432 2344333 33468889999999999999999998753 333332222 1222222
Q ss_pred c-ccchHHHHHHHHHHHhhc-----CCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 689 Y-RDNIWVQALSLFDEVKLM-----DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 689 ~-~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
| -...+++|+.++.+-+.+ +.......|.+|++++...|..++|..+....++
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 245678888888774431 1112356788999999999999999887765544
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.35 E-value=0.017 Score=65.08 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
..+|.++.-.+...|++++|...|++....+ |+...|..+...+...| +.++|.+.|++..+.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 3444444444444455555555555555432 44455555555555555 555555555555443
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0046 Score=58.91 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
+-+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 346677888888888888888888888887766553
No 170
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.34 E-value=0.0056 Score=54.27 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=5.8
Q ss_pred HHcCCHHHHHHHHHHH
Q 002814 450 GKQGKYDEVRRMFEQM 465 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m 465 (877)
.+.|+.++|.+.++++
T Consensus 87 ~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 87 QELGDKEKAKATLQQV 102 (119)
T ss_pred HHhCChHHHHHHHHHH
Confidence 3333333333333333
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.33 E-value=0.0007 Score=55.86 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 248 (877)
.|+++.|+.+|+.++......+ +...+..+..+|.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5788888888888887764211 334555578888888888888888877 33222 23445555677888888888888
Q ss_pred HHHHH
Q 002814 249 SVFNS 253 (877)
Q Consensus 249 ~~~~~ 253 (877)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.0032 Score=53.00 Aligned_cols=39 Identities=10% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYS 485 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~ 485 (877)
.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.+
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 333334555555555555555555 455555555555444
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.32 E-value=0.00022 Score=45.83 Aligned_cols=26 Identities=42% Similarity=0.942 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
|+++|++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.32 E-value=0.0053 Score=51.74 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchh
Q 002814 512 YSALIDALCKNGLVESAVSLLDEMTKEGI-RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (877)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (877)
-...|..+...|++.....+|+.++..|+ -|+..+|+.++.+.++..--..+++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie------------------------- 82 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIE------------------------- 82 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHH-------------------------
Confidence 34556667777999999999999999999 8999999999988765432111111
Q ss_pred hhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002814 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSR 657 (877)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~ 657 (877)
+ ++-+.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 83 --------~-------------------------kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 83 --------N-------------------------KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred --------H-------------------------HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 0 233477799999999999999999999988764
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.31 E-value=0.0008 Score=53.04 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcC-chhhHHHHHHHhhh
Q 002814 691 DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFG-QKRGAQLVVLEGKR 741 (877)
Q Consensus 691 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 741 (877)
.+++++|+..|+++++.+| .+..+|..++.+|...| ++++|.+.++++++
T Consensus 16 ~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp TTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4445555555555555555 45556666666666666 56666666665544
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.31 E-value=0.0054 Score=63.67 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK-GGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
+|..++...-+.+..+.|+.+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 1122233322222122 34444455555555543 233555555555555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNV---VTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
.+.|+.+.|..+|++.+.. +.++. ..|...++.=.+.|+++....+..++.+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5556666666666655543 22221 25555555555566666555555555555544
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.0046 Score=56.30 Aligned_cols=92 Identities=13% Similarity=-0.056 Sum_probs=65.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
.+...+.+.|++++|.++|+.+...+ +.+...|..|.-++...|++.+|+..|..+....+. +...+..+..++..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 34555667777777777777777665 344556677777777777777777777777776543 66677777777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 002814 241 SGYCQEAISVFNSMKR 256 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~ 256 (877)
.|+.+.|++.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776654
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.29 E-value=0.00055 Score=56.47 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (877)
+.|++++|..++++ .+.++ .+......++.+|.++|++++|.++++++
T Consensus 37 ~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 37 QQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44555555555555 34444 34444556688999999999999888753
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.027 Score=55.49 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
+.+-.....+.+.|++.+|++.|+.+...-+..+-...+.-.++.++-+.|+++.|...+++.++.-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344456667788999999999999988766656666677778888889999999999999887753
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.0059 Score=58.21 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 401 GLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL 475 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 475 (877)
..|..+|..+++.|.+. |.++-....++.|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+.-.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h------- 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH------- 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc-------
Confidence 44666666666666543 5666666777777777777788888877777654 2221 11222222111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
.-.+-+-|++++++|...|+.||..++..|+..+.+.+.
T Consensus 115 ----------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ----------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 112345566677777777777777777777776655543
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.25 E-value=0.0062 Score=62.74 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=54.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHccccC-CChHHHHHHHHHHHHhcCChHHHHHHHHHHH--Hc--CC-CCCHHHHHHHHHH
Q 002814 164 RELGNRGEWSKAIQCFAFAVKREERK-NDQGKLASAMISILGRLGKVDLAKNIFETAL--NE--GY-GNTVYAFSALISA 237 (877)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--g~-~~~~~~~~~li~~ 237 (877)
..+++.|+.+..+.+|+.+++.|... ..-..+|+.|.++|.-.+++++|.+++..=+ .+ |- .-...+...|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 45788999999999999999887321 1112356777788888888999888764321 11 10 0122333445555
Q ss_pred HHhcCCHHHHHHH
Q 002814 238 YGRSGYCQEAISV 250 (877)
Q Consensus 238 ~~~~g~~~~A~~~ 250 (877)
+--.|.+++|+.+
T Consensus 105 lKv~G~fdeA~~c 117 (639)
T KOG1130|consen 105 LKVKGAFDEALTC 117 (639)
T ss_pred hhhhcccchHHHH
Confidence 5566677766544
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.24 E-value=0.005 Score=63.92 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 483 (877)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777788888887777543 2233444444444233 45556688888877765 45567777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 484 YSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
+.+.++.+.|..+|++.+.. +..+ ...|...+..-.+.|+.+.+.++.+++.+. -|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 78888888888888887654 2222 248888888888899999999999998874 344333333443
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.17 E-value=0.021 Score=54.54 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 448 (877)
.+..+...|...|++++|+..|++..+....+. ...+..+...+.+.|++++|+..+++..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444455555555555555555544321111 2345555555556666666666665555443 2334445555555
Q ss_pred HHHcCCHHHHH
Q 002814 449 YGKQGKYDEVR 459 (877)
Q Consensus 449 ~~~~g~~~~A~ 459 (877)
|...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544333
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.16 E-value=0.44 Score=50.14 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 486 (877)
.+..|.-+...|+...|.++-.+.. .||..-|...+.+|++.+++++-.++... + -++.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 3444455555666666665544443 45666666666666666666655554321 1 133556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (877)
.|+..+|..+..++ .+..-+..|.++|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 66666666555441 1234455566666666665543
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.13 E-value=0.17 Score=51.13 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=27.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+.+.|.+.|.+..|+.-++.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555543 11222334444555555555555555544433
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.09 E-value=0.011 Score=56.33 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
..+..+...+...|++++|+..|..++.....+.....++..+..++...|++++|++.++.+..... .....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 34555677777889999999999988876433333345778888889999999999999988887532 24556666666
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 002814 237 AYG-------RSGYCQEAISVFN 252 (877)
Q Consensus 237 ~~~-------~~g~~~~A~~~~~ 252 (877)
.+. +.|+++.|+..++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 666 5555554444433
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.27 Score=54.55 Aligned_cols=130 Identities=10% Similarity=0.063 Sum_probs=64.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCCCHH
Q 002814 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLK--PNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~ 281 (877)
+--|+|++|+++|-+|-+++ .-|..+.+.|++-...++++.--. +.. --..+|+.+...++... .++
T Consensus 745 ~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~-~We 813 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMM-EWE 813 (1189)
T ss_pred hhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHH-HHH
Confidence 33577888888887775542 134455566666555555543110 000 01345666666666555 566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
+|.+.|..-.. . ...+.++.+..++++-+.+-..+. .|....-.+.+++.+.|.-++|.+.|-
T Consensus 814 ~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 814 EAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 66666654221 1 123444444444444333333222 234444555555555565555555543
No 188
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=97.04 E-value=0.0014 Score=53.69 Aligned_cols=71 Identities=34% Similarity=0.423 Sum_probs=49.1
Q ss_pred chhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCccc---------
Q 002814 754 LDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWV--------- 824 (877)
Q Consensus 754 ~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~--------- 824 (877)
+|||.++...|...+..++...+.. --..+.|+||.|.||. + ..++++|...|++ +..+..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~------~~~~~~II~G~G~hS~--~-g~Lk~~V~~~L~~-~~~~~~v~~~~~~~~ 70 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQR------GIRELRIITGKGNHSK--G-GVLKRAVRRWLEE-GYQYEEVLAYRDAEP 70 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHT------THSEEEEE--STCTCC--T-SHHHHHHHHHHHH-THCCTTEEEEEE--C
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHc------CCCEEEEEeccCCCCC--C-CcHHHHHHHHHHh-hhccchhheeeecCC
Confidence 6999999999999999998776533 2267889999999984 2 2499999999987 533332
Q ss_pred ccCCCceEEe
Q 002814 825 ANCNLGRFIS 834 (877)
Q Consensus 825 ~~~~~g~~~~ 834 (877)
...|.|.++.
T Consensus 71 ~~g~~G~~~V 80 (83)
T PF01713_consen 71 EDGNSGATIV 80 (83)
T ss_dssp CCTGGGEEEE
T ss_pred CCCCCeEEEE
Confidence 2346777653
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.99 E-value=0.04 Score=62.19 Aligned_cols=61 Identities=16% Similarity=0.004 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
..|..+...+...|++++|...++++++.+ |+...|..+...+...|+.++|.+.|++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444555555555555555543 3455555555555555555555555555544
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.022 Score=54.23 Aligned_cols=79 Identities=16% Similarity=0.004 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL--DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 448 (877)
.|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|+..+++..... +....+++.+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444455555555555555555554432111 12345555555555566666666655555432 2233344444444
Q ss_pred HH
Q 002814 449 YG 450 (877)
Q Consensus 449 ~~ 450 (877)
|.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.51 Score=46.33 Aligned_cols=61 Identities=7% Similarity=-0.012 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
.+.++......|.+.-...++.+.++...+.+......|+++-.+.|+.+.|...|++..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555566666666666666655455555666666666666666666666665543
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.33 Score=47.53 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCHHHHH
Q 002814 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-----IDQDIFTYN 338 (877)
Q Consensus 264 ~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~ 338 (877)
..-+.++..+...+ ++.-...++.+.++...+.+......|+++-.+.|+.+.|...|++..+.. +.-+..+.-
T Consensus 178 ~Vmy~~~~~llG~k-Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMK-EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcch-hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34566677777777 888889999999988777788888999999999999999999999776542 222333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 339 TLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTV 410 (877)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 410 (877)
.....|.-.+++.+|...|+++...+.. |.+.-|...-+..-.|+..+|++.++.|+.. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4445566678888888888888876543 6666676666666678889999999988876 4555444433
No 193
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.86 E-value=0.82 Score=48.38 Aligned_cols=90 Identities=8% Similarity=-0.020 Sum_probs=66.8
Q ss_pred HhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 002814 147 KKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN 226 (877)
Q Consensus 147 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 226 (877)
+.+...+.+.-.|-.++..|..++..++.+++++++...- |--..++..-+..-...+++...+.+|.+.+... .
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf---p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l 107 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF---PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--L 107 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC---ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--c
Confidence 3444555566678889999999999999999999987653 3333467777777777789999999999988754 3
Q ss_pred CHHHHHHHHHHHHhc
Q 002814 227 TVYAFSALISAYGRS 241 (877)
Q Consensus 227 ~~~~~~~li~~~~~~ 241 (877)
++..|...+..-.+.
T Consensus 108 ~ldLW~lYl~YIRr~ 122 (660)
T COG5107 108 NLDLWMLYLEYIRRV 122 (660)
T ss_pred cHhHHHHHHHHHHhh
Confidence 577887777655443
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.85 E-value=0.0029 Score=49.09 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=42.0
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
..|++++|++.|+++++.+| .+..++..+++++...|++++|..++.++.+.
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778888888888888888 67888888999999999999998888877654
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=96.83 E-value=0.0092 Score=54.62 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=76.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 650 AILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
+...-+...|++++|..+|.-+...|+.+...+.++...+ ..+.+++|+..|.-+..++. .+.......+.+|..+|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 3444556789999999999999998988877776766555 57899999999999988887 566667778999999999
Q ss_pred hhhHHHHHHHhhhh
Q 002814 729 KRGAQLVVLEGKRR 742 (877)
Q Consensus 729 ~~~A~~~~~~~~~~ 742 (877)
.+.|...|..+.++
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999877763
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.51 Score=53.18 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC 520 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 520 (877)
+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-.++-+.+. .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444455666788888877766654 4677788888888888888887666554432 3567777888888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHH
Q 002814 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568 (877)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 568 (877)
+.|+.+||.+++-+.... . -...+|.+.|++.+|.+...
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 888888888888766431 1 46677888888888877653
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.02 Score=57.67 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=88.1
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhc--c--ccchHHHHHHHHHHHhhcCCCcchhH
Q 002814 641 IKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG--Y--RDNIWVQALSLFDEVKLMDSSTASAF 715 (877)
Q Consensus 641 ~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~--~--~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (877)
-.| |...|.-|..+|...|+.+.|...|..+.++.+++..+.-++... + ...+-.+|..+|+++++.|| .|...
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHH
Confidence 346 777899999999999999999999999999999988877666332 2 34467899999999999999 88999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
...|+-.++..|++.+|...|..+.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999999999999999887654
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.75 E-value=0.0041 Score=48.23 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=37.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
+...+...|++++|.+.|+.+++.+|.+..+...+...+ ..|++++|+..|+++++.+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344556667777777777777766666666655554333 56677777777777766666
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.73 E-value=0.083 Score=46.43 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
+-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444432222 1223333344444444444444444443
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.029 Score=56.45 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHH
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG---YCQEAISVFNSMKRYNLKPNLVTYN 267 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~ 267 (877)
.+..-|..|...|...|+++.|...|.++.+... ++...+..+..++.... .-.++.++|+++.+.+.. |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 3444555555555555555555555555554422 24444444444433221 223455555555543221 333444
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 268 AVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 268 ~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
.|...+...| ++.+|...|+.|++.
T Consensus 232 lLA~~afe~g-~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQG-DYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 4444455555 555555555555554
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0038 Score=48.94 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
..|++++|++.|+++.+.+| .+..++..|+.+|.+.|++++|..++.......
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46788889999999888888 678888889999999999999999888766544
No 202
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.67 E-value=1.1 Score=47.17 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 450 (877)
+.+..|.-+...|+...|.++-++.. .||..-|-..+.+++..++|++-..+... +..+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455666778888888888877664 57888888999999999999877765322 235577888899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002814 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFRE 499 (877)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 499 (877)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998888772 125677888999999998876543
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.67 E-value=0.0088 Score=47.01 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALN 221 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 221 (877)
+..|..+...+.+.|++++|+..|..+++.+ +.+..++..+..++.+.| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555666666666666666666666664 445556666666666666 56666666666654
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.64 E-value=0.0089 Score=46.79 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=26.9
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
+.|++++|++.|+.++... |.+..+...++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555543 333444455555555555555555555555543
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.64 E-value=0.13 Score=50.53 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002814 196 ASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
+-..+..+...|++++|.+.|+.+...-+. -...+.-.++.++.+.|++++|+..|++..+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556677889999999999999875332 23456677888888999999999999998764
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.59 E-value=0.61 Score=43.36 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPNLLTY 477 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 477 (877)
.|+...-..|..+..+.|+..+|...|++...--+.-|....-.+.++....+++.+|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444455555566666666666666665543344455555555555566666666666666555432 1122 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (877)
-.+...|...|++.+|...|+..... .|+...-......+.++|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33445555556666666666655553 233333333334445555555544333
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.53 E-value=0.71 Score=45.72 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
+.+-.-+....+.|+|++|.+.|+.+..+.+..+-...+...++.++-+.+++++|+..+++.+..-
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3333334444567788888888877777665555555566666777777777777777777776653
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.41 E-value=0.13 Score=56.27 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=13.5
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 002814 518 ALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~ 537 (877)
+|.+.|+-.||..+++++..
T Consensus 826 AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhh
Confidence 45566777777777777654
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=1.8 Score=45.94 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHH
Q 002814 626 ILCILGVFQKMHKLK-IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDE 703 (877)
Q Consensus 626 ~~~A~~~~~~m~~~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~ 703 (877)
.+.|..+|-+....| +.+++.++++++.-++. |+..-|.++|+--...-+++....+.++.-+ +.++-..|..+|++
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 345677788887777 55677788888776664 6777888888875544444433333333322 56677778888886
Q ss_pred HhhcCC-CcchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 704 VKLMDS-STASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 704 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
.++.-. ..-..+|..+++--...|....+..+-+.+.
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 654211 1225678888777777888777666554443
No 210
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.34 E-value=2.3 Score=47.13 Aligned_cols=429 Identities=12% Similarity=0.098 Sum_probs=211.5
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 233 (877)
...+.|..++..-.+....+.+..++..++..- |.-...|......=.+.|..+.+.++|++.+. +++.++..|..
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 345566667766666566666677777666553 33334566666666777778888888887765 35556666666
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 234 LISAYG-RSGYCQEAISVFNSMKRY-NLK-PNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (877)
Q Consensus 234 li~~~~-~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 310 (877)
....++ ..|+.+.-.+.|+..+.. |.. -....|-..|.--...+ ++.....+|++.++. ...-|+....-|
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk-s~k~v~~iyeRilei----P~~~~~~~f~~f- 192 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK-SWKRVANIYERILEI----PLHQLNRHFDRF- 192 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc-cHHHHHHHHHHHHhh----hhhHhHHHHHHH-
Confidence 655444 346666666777766642 221 13445555565555555 666666666666653 111122111111
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC----CCCCCHHHHHHHHHHHH-HcCCH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPNVVTYSTMIDGYA-KAGRL 385 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~~~~~li~~~~-~~g~~ 385 (877)
.+..+.. ++. . ....+++.++-.....+ ........+..-++.-. ..+..
T Consensus 193 ------------~~~l~~~-~~~--~----------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l 247 (577)
T KOG1258|consen 193 ------------KQLLNQN-EEK--I----------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSL 247 (577)
T ss_pred ------------HHHHhcC-Chh--h----------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchh
Confidence 1111100 000 0 00111111111111100 00001111111111110 11222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-------IRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
+++...+.+.... --.++-......+.+..|+.-++.- ..++..+|+.-++.-.+.|+.+.+
T Consensus 248 ~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 248 TEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred hHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 2232222221111 1112222233334444444433321 124567788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHH
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA-LCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 537 (877)
.-+|++..-- +.-=...|-..+.-....|+.+-|..++....+.-++ +......+-.. .-..|+++.|..+++...+
T Consensus 317 ~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 317 FILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 8888887542 1112344555555555558888888777776654433 32222223233 3457899999999999987
Q ss_pred CCCCCCHH-HHHHHHHHHhhcCChhhhHH---HHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHh
Q 002814 538 EGIRPNVV-TYNSIIDAFGRSATTECTVD---DVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKA 613 (877)
Q Consensus 538 ~g~~p~~~-~~~~li~~~~~~g~~~~a~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (877)
. + |+.+ .-..-+....+.|..+.+.- ++.....- ..+ .+..+...--+.++.
T Consensus 395 e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~-----------------~~i~~~l~~~~~r~~---- 450 (577)
T KOG1258|consen 395 E-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KEN-----------------NGILEKLYVKFARLR---- 450 (577)
T ss_pred h-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccC-----------------cchhHHHHHHHHHHH----
Confidence 6 3 6654 33344555667777766652 11111100 000 011122222122211
Q ss_pred cCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 002814 614 GQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSF 661 (877)
Q Consensus 614 g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~ 661 (877)
+..+.+.+.|..++.+|.+. ..++...|..+++.+...+..
T Consensus 451 ------~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 451 ------YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred ------HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 22334667788888888772 334666688888777665543
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.34 E-value=0.8 Score=42.61 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC---CCCCHHHHH
Q 002814 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN---ISPNVVTYS 373 (877)
Q Consensus 297 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~ 373 (877)
|++..-..|..+..+.|+..+|...|++....-+.-|......+..+....+++..|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444445555566666666666666665543334455555555555555566666655555554431 1112 223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
.+.+.|...|+..+|...|+..... .|+...-..-...+.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 3444455555555555555555443 3333333333333444454444443
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=96.30 E-value=0.092 Score=56.43 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHH-HCCCCCCHHH-HHHHHHHHH---------cCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccc
Q 002814 625 EILCILGVFQKMH-KLKIKPNVVT-FSAILNACS---------RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN 692 (877)
Q Consensus 625 ~~~~A~~~~~~m~-~~g~~Pd~~t-~~~ll~a~~---------~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 692 (877)
..+.|+.+|.+.. ...+.|+-.. |..+..++. ......+|.++.+.+.+.|+.+..+...+.... ..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5667999999988 2237787554 444433332 123456788889999999999888765543321 344
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhch
Q 002814 693 IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (877)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (877)
+.+.|..+|+++..++| +.+..|...++++...|+.++|.+.++++.+..-.
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 59999999999999999 78899999999999999999999999998776543
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.24 E-value=0.016 Score=46.79 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHh
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (877)
.+|+.+..+|...|++++|..+|+++... -...+ ...+ .-..+++.++.+|..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~-------------------------~~~~-~~a~~~~~lg~~~~~ 58 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLG-------------------------DDHP-DTANTLNNLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTT-------------------------THHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHC-------------------------CCCH-HHHHHHHHHHHHHHH
Confidence 35788889999999999999999887632 11100 0001 125678899999999
Q ss_pred cCchhhHHHHHHHhhh
Q 002814 726 FGQKRGAQLVVLEGKR 741 (877)
Q Consensus 726 ~g~~~~A~~~~~~~~~ 741 (877)
.|++++|.++++++.+
T Consensus 59 ~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 59 LGDYEEALEYYQKALD 74 (78)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.23 E-value=0.089 Score=53.66 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcC
Q 002814 485 SKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN----VVTYNSIIDAFGRSA 558 (877)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 558 (877)
.+.|++++|...|+.+++...... ...+..+..+|...|++++|...|+.+.+. .|+ ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 334555555555555544321110 123444455555555555555555555532 111 223333444455555
Q ss_pred ChhhhHHHHHHHhhhhhh
Q 002814 559 TTECTVDDVERDLGKQKE 576 (877)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~ 576 (877)
+.++|+..++++++.+|+
T Consensus 232 ~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 555555555555555554
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.22 E-value=0.086 Score=53.80 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=47.2
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCH
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYC 244 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~ 244 (877)
.+.|++++|+..|+..++..+.......++..+..+|...|++++|...|+.+++.-+. ....++-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34466666666666666554322222334555556666666666666666666543211 1233444444555556666
Q ss_pred HHHHHHHHHHHh
Q 002814 245 QEAISVFNSMKR 256 (877)
Q Consensus 245 ~~A~~~~~~m~~ 256 (877)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.74 Score=44.79 Aligned_cols=205 Identities=12% Similarity=0.079 Sum_probs=106.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.|..-..+|....++++|...+..+.+-.. .+... +-....++.|.-+..++.+. +--+..|+--+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yE---nnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYE---NNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH---hcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 455556677788888888888877764321 11111 11223345555555555442 1124456666678
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhC
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN---G--VQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~---g--~~p~~~t~~~ll~~~~~~ 312 (877)
|..+|..+-|-..+++.-+ ..+.- +.++|+++|++.... + .+.-...+..+.+++.+.
T Consensus 101 Y~E~GspdtAAmaleKAak----------------~lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK----------------ALENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHhCCcchHHHHHHHHHH----------------HhhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 8899998888877777653 11222 455666666555431 0 000112233444556666
Q ss_pred CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhC---CCCCCHHHHHHHHHHHHHcCC
Q 002814 313 GLWEAARNLFNEMVHR----GIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAK---NISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~li~~~~~~g~ 384 (877)
..+++|-..|.+-... .--++ -..|-+.|-.|.-..++..|...+++--+. .-.-|..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 6666665554432211 00111 123444555555666777777777763322 1122445556666655 3455
Q ss_pred HHHHHHHH
Q 002814 385 LDDALNMF 392 (877)
Q Consensus 385 ~~~A~~~~ 392 (877)
.+++.+++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 55544443
No 217
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.21 E-value=0.0038 Score=40.84 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=29.4
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHhcCchhhHH
Q 002814 701 FDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQ 733 (877)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (877)
++++++++| .+...|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 678889999 88999999999999999999986
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.03 E-value=1.8 Score=42.89 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCV--SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 525 (877)
.+...|+++.|...|.+...... ......+......+...++.+.+...+..+...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34445555555555554433110 0122222223333444555555555555554432110234455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 526 ESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 526 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
++|...+...... .|+ ...+..+...+...+..+++...+.+.+..
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666555555543 222 223333333333444455555555444443
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=0.91 Score=50.11 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
+..+...+...+.+...+.-|.++|..|-.. ..++......+++++|..+-++.-+. .+| +|.-..+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 4444555555555666677777777766422 34566677778888887776655432 233 3334445
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
.++...++++|.+. |.+.|+-.+|..+++++..
T Consensus 813 wLAE~DrFeEAqkA----------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKA----------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHH----------------------HHHhcchHHHHHHHHHhhh
Confidence 55556666665543 4456777888888877754
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.77 E-value=3.1 Score=43.52 Aligned_cols=250 Identities=14% Similarity=0.065 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDA----ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 387 (877)
.|+++.|.+-|+.|.. |..+-..=+.+ .-+.|..+.|.+.-++.-..-.. -...+...+...|..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 4666666666666654 22222221221 23455555555555554433211 23455566666666666666
Q ss_pred HHHHHHHHHHCC-CCCCHHH--HHHHHHHH--H-HcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 002814 388 ALNMFSEMKFLG-IGLDRVS--YNTVLSIY--A-KLGRFEEALLVCKEMESSGIRKDAVTY-NALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 388 A~~~~~~m~~~g-~~pd~~~--~~~li~~~--~-~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~ 460 (877)
|+++++.-+... +.+|..- -..|+.+- . -.-+...|...-.+..+. .||..-- ..-..+|.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 666666544321 2222211 11122111 1 112344444444444333 4453322 223456778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM-QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (877)
+++.+-+.. |....+. +..+.+.|+.-... +-.+.+.... +.+..+...+..+-...|++..|..--+....
T Consensus 285 ilE~aWK~e--PHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 285 ILETAWKAE--PHPDIAL--LYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHHhcC--CChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 888887763 3433332 22334455432211 1111222211 22456666677777778888777766665554
Q ss_pred CCCCHHHHHHHHHHH-hhcCChhhhHHHHHHHhhhhhh
Q 002814 540 IRPNVVTYNSIIDAF-GRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 540 ~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
..|....|..|.+.- +..|+-.++.+.+.++++..-+
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 467777777777765 4458877887777777765444
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.58 E-value=0.038 Score=44.60 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccc----cCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREE----RKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (877)
..+..+...|...|++++|+..|++++.... ..+....++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455677777788888888888877775411 1112244566677777777777777777776653
No 222
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.56 E-value=0.33 Score=42.14 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHH
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVY---AFSALISAYG 239 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~~~ 239 (877)
.-+++..|+++.|++.|..++..- |....+|+.-..++.-.|+.++|..=++++++..-..+-. +|..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 345778899999999999998773 5667799999999999999999999999998753332333 3333445677
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 002814 240 RSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g 258 (877)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8899999999999887766
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.40 E-value=3.3 Score=44.13 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444455555555555555555555555543
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.39 E-value=0.06 Score=42.71 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=35.5
Q ss_pred HHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002814 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 223 (877)
.+.+.++|++|+++++.++..+ |.+...+.....++.+.|++++|.+.|+.+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4556666677777776666664 3344556666666666666666666666666553
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.36 E-value=0.042 Score=58.86 Aligned_cols=100 Identities=7% Similarity=-0.125 Sum_probs=70.8
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchh---HHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhH
Q 002814 641 IKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG---VAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAF 715 (877)
Q Consensus 641 ~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~---~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (877)
..| +...++.+..+|.+.|++++|...|+++++++|++.. ..+++...| ..|+.++|+..++++++... . .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn---~-~ 145 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN---L-K 145 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---h-h
Confidence 456 4567999999999999999999999999999998764 366776665 68999999999999998632 1 2
Q ss_pred HHHHHH--HHHhcCchhhHHHHHHHhhhhhc
Q 002814 716 YNALTD--MLWHFGQKRGAQLVVLEGKRRQV 744 (877)
Q Consensus 716 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 744 (877)
|.++.. .+....+..+..+++.+...-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322111 12233444566666665555443
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.31 E-value=0.11 Score=41.13 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 414 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
|.+.+++++|+++++.+...+ +.+...|......|.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444433 33344444444444444444444444444443
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.25 E-value=0.12 Score=47.89 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTY 547 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 547 (877)
.....++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|+++|+++.. .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344566777778888888888888888765 34777888888888888888888888888753 4788877653
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=95.21 E-value=0.19 Score=46.21 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=60.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
..-.+-+.|++++|..+|..+...++ .+...+..|..++-..+++++|...|..+...+.. |...+-.....|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 44455667777777777777766542 33446677777777777777777777776555432 444445566677777
Q ss_pred CCHHHHHHHHHHHHh
Q 002814 242 GYCQEAISVFNSMKR 256 (877)
Q Consensus 242 g~~~~A~~~~~~m~~ 256 (877)
|+.+.|+..|+....
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777777665
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.16 E-value=3.7 Score=40.56 Aligned_cols=223 Identities=17% Similarity=0.119 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NISPNVVTYSTMIDGYAKAGRLDDALN 390 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~A~~ 390 (877)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444443211 12455556666666666666666666655431 122244555555666666666677777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLS-IYAKLGRFEEALLVCKEMESSGI--RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
.+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+++...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 776666543222 122222222 56677777777777777654221 12333444444446677788888888887776
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 468 DCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 468 ~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.. .. ....+..+...+...+.++.|...+......... ....+..+...+...|..+++...+.+....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 22 3566777777777788888888888887765321 2344444444555667788888888887764
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.15 E-value=0.48 Score=43.70 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRIT 301 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~g~~p~~~t 301 (877)
+...++..+...|++++|+.+.+++....+. |...|..+|.++...| +...|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQG-RRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555556666666666655553322 4555555666666666 55666655555532 355555544
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.12 E-value=3.1 Score=44.40 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
.|...+..++.++.-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35555667777888888888888888888765
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.06 E-value=5.3 Score=41.86 Aligned_cols=295 Identities=17% Similarity=0.128 Sum_probs=171.6
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCCCCHHHHH--
Q 002814 230 AFSALISAYG--RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC--GKGGVDFKHVVEIFDDMLRNGVQPDRITFN-- 303 (877)
Q Consensus 230 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~-- 303 (877)
.|.+|-.++. ..|+-..|.++-.+..+. +.-|....-.++.+- .-.| +++.|.+-|+.|.. |..|-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG-~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEG-DYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcC-chHHHHHHHHHHhc-----ChHHHHHh
Confidence 3444444433 345666666655544321 122444444444432 2346 67777777777765 233322
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC-CCCCHHH--HHHHHHH
Q 002814 304 --SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISPNVVT--YSTMIDG 378 (877)
Q Consensus 304 --~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~~--~~~li~~ 378 (877)
.|.-...+.|..+.|+.+-+..-..- +--...+.+.+...|..|+++.|+++++.-.... +.+|+.- -..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 22222345677777777776665542 1235667777888888888888888887654332 2333322 1122221
Q ss_pred HH---HcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 379 YA---KAGRLDDALNMFSEMKFLGIGLDRVSYN-TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 379 ~~---~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 454 (877)
-. -.-+...|.+.-.+..+. .||.+--. .-..++.+.|+..++-.+++.+-+.. |.+..+.. -.+.+.|+
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd 309 (531)
T COG3898 236 KAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD 309 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC
Confidence 11 122345555555444443 66654332 33467889999999999999998774 55544432 23455665
Q ss_pred HHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHH
Q 002814 455 YDEVRRMFEQMKAD-CVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK-NGLVESAVSL 531 (877)
Q Consensus 455 ~~~A~~~~~~m~~~-g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~ 531 (877)
.- ..-+++.... .++| +......+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...
T Consensus 310 ta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 TA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred cH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHH
Confidence 32 2222222111 1233 5667777888888899999888777766654 5788888888876554 5999999999
Q ss_pred HHHHHHCCCCC
Q 002814 532 LDEMTKEGIRP 542 (877)
Q Consensus 532 ~~~m~~~g~~p 542 (877)
+-+..+.--.|
T Consensus 386 lAqav~APrdP 396 (531)
T COG3898 386 LAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCCCCC
Confidence 99888753334
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.06 E-value=0.25 Score=53.14 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=50.8
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
+..++.+..+...|.+.|++++|+..|+.++..++.......+|..+..+|.+.|++++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3446667777888888888888888888888876322111134777888888888888888888888764
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=1.8 Score=43.73 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-...+...|++.+|...|..+.... +.+..+...++.+|...|+++.|..++..+...-.........+-|..+.+.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3445666777777777777777664 3334455667777777777777777777665432111111112233344444
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 291 (877)
....+..++-.+... .| |...-..+...+...| +.+.|.+.+-.++
T Consensus 217 a~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g-~~e~Ale~Ll~~l 263 (304)
T COG3118 217 AATPEIQDLQRRLAA---DPDDVEAALALADQLHLVG-RNEAALEHLLALL 263 (304)
T ss_pred hcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 444444444333333 23 3444444445555555 5555555544444
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=8.3 Score=44.02 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
.-.+.+--+.-+...|+..+|.++-.+.+ .||-..|..-+.+++..+++++-+++-+.++. ..-|.-++.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 34455666667778899999999887775 47999999999999999999987776666542 345666889
Q ss_pred HHhhcCChhhhHHHHHHHhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
+|.+.|+.+||.++.-+.-.+.
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH
Confidence 9999999999999887665554
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.03 E-value=1.3 Score=48.07 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSIID 552 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~ 552 (877)
+-..+..++-+.|+.++|++.|++|.+.... -.......|+.++...+.+.++..++.+-.+... |+.. .|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHH
Confidence 3345666667788888888888888754322 2334666788888888888888888887654322 3333 4554333
Q ss_pred HHhhcCCh---------------hhhHHHHHHHhhhhhhhh
Q 002814 553 AFGRSATT---------------ECTVDDVERDLGKQKESA 578 (877)
Q Consensus 553 ~~~~~g~~---------------~~a~~~~~~~l~~~~~~~ 578 (877)
.....|+. ..|++.+.++++.+|..+
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 32222221 235566778888877654
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.01 E-value=0.29 Score=48.44 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhh
Q 002814 506 KADVVLYSALIDALCK-----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL 580 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~ 580 (877)
+.|..+|...+..+.. .+.++-....++.|.+.|++-|..+|..|+..+-+..-...- ++.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~n--vfQ------------ 129 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQN--VFQ------------ 129 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHH--HHH------------
Confidence 3466666666666543 355677777899999999999999999999988654322110 000
Q ss_pred hhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 002814 581 DAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660 (877)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 660 (877)
..|- +--+.-++++.++++|...|+.||..+-..|++++.+.|-
T Consensus 130 ----------------------~~F~--------------HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 ----------------------KVFL--------------HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----------------------HHHh--------------hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 0110 0001345799999999999999999999999999998775
No 238
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.96 E-value=9.2 Score=44.09 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 406 SYNTVLSIYAKLG-----RFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 406 ~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
...-+..+|.+.. +.+.|..++.+.-+.| .|+....-..+..... ..+...|.++|...-..|. ...+-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHH
Confidence 3444445554422 5566777777777766 4444433333222222 2456778888887777763 233333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002814 480 LIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 480 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (877)
+..+|.. ..+.+.|..++++..+.| .+....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 3333322 236777778887777776 2221111222222333 666666666666665543
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.93 E-value=0.44 Score=42.83 Aligned_cols=84 Identities=8% Similarity=0.046 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
+..+-.-.....+.|+|++|++.|+.+..+-+..+-...+-..++.+|.+.+++++|...+++.++..+...-.-|-..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 44444455666788999999999998888765555555667788889999999999999999998875442233444444
Q ss_pred HHHH
Q 002814 236 SAYG 239 (877)
Q Consensus 236 ~~~~ 239 (877)
.+++
T Consensus 90 ~gL~ 93 (142)
T PF13512_consen 90 RGLS 93 (142)
T ss_pred HHHH
Confidence 4444
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=10 Score=44.00 Aligned_cols=185 Identities=13% Similarity=0.135 Sum_probs=115.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
+......+..+.+...+.-|+.+-.. ++........+.....+-+.+.|++++|..-|-+.+.. .+| ..+|
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 34455667777778888888876542 22111222234445566677889999998887766543 222 2355
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.-|....+..+-..+++.+.+.|+. +..--..|+.+|.+.+ +.++-.++.+.-- .|.. ..-....+..+.+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 6667777778888888888888876 6666677888898888 7777666655433 2211 11134566777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
++|..+-.+... .......+ +-..+++++|++.+..|.-
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 777766544433 23333333 3456778888888777653
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.85 E-value=9.2 Score=46.07 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHHHH
Q 002814 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFEEA 423 (877)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~----~~~li~~~~~~g~~~~A 423 (877)
++++.|+.-+.++.. ..|.-.++.-.+.|.+.+|+.+++ +|... |.+..+-+...+++++|
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 455666655555431 123333444455666666666553 23332 33333344455566666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDVYSKGGLYKEAMQIFREFK 501 (877)
Q Consensus 424 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~ 501 (877)
.-.|+..-+. .--+.+|..+|++.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 5555543211 12345566666666666666655432 1111 12345555556666666666655544
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 502 QAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 502 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
.. ..-.+..||+...+++|+++-...
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 31 112233445555566665554443
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.84 E-value=4.7 Score=40.13 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002814 194 KLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 271 (877)
.+|+.-+. -...|++++|...|+.+..+.+- -...+.-.++-++.+.+++++|+..+++....-+.-....|...|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444443 55778999999999998876322 2244555666778889999999999998887544334455655566
Q ss_pred HHH
Q 002814 272 ACG 274 (877)
Q Consensus 272 ~~~ 274 (877)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 554
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.83 E-value=6.9 Score=42.00 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=78.1
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCC---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKND---QGKLASAMISILGRLGKVDLAKNIFETALNE-GYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~ 241 (877)
+.+++++++|.++|.++.+.....+. ...+.+.++++|.- ++.+.....+....+. |..+-...|..| .+-+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKAL--VAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHh
Confidence 45678899999999888766422211 12234566666653 4566666666555443 222222222222 23477
Q ss_pred CCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 002814 242 GYCQEAISVFNSMKRY--NLKP------------NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----GVQPDRITFN 303 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----g~~p~~~t~~ 303 (877)
+.+++|++.|..-.+. +-.+ |...-+..+..+...| ++.++..+++++... ...-+..+|+
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-RFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 8889998888776543 2111 1122234455566666 677777666666543 2334566666
Q ss_pred HHHHHHH
Q 002814 304 SLLAVCS 310 (877)
Q Consensus 304 ~ll~~~~ 310 (877)
.++-+++
T Consensus 172 ~~vlmls 178 (549)
T PF07079_consen 172 RAVLMLS 178 (549)
T ss_pred HHHHHHh
Confidence 6555544
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.38 Score=50.60 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=75.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 385 (877)
.+.|.+.|++..|...|++.+.. +. |.+.-+.++...... .-..+++.+.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 45677777888777777776543 00 001111111111111 1234455666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE-VRRMFEQ 464 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 464 (877)
.+|++...+.+..+ +.|....---..+|...|+++.|+..|+++++.. +.|-.+-+.|+..-.+.....+ ..++|..
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766665 5556666666667777777777777777776654 3343344444444333333332 3555555
Q ss_pred HHH
Q 002814 465 MKA 467 (877)
Q Consensus 465 m~~ 467 (877)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 554
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=94.63 E-value=2.4 Score=45.96 Aligned_cols=160 Identities=10% Similarity=0.040 Sum_probs=92.2
Q ss_pred hhH--HHHHHHHHcc-----CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 002814 157 DDY--TFLLRELGNR-----GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR---------LGKVDLAKNIFETAL 220 (877)
Q Consensus 157 ~~~--~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 220 (877)
+.| ...+++.... -..++|+.+|.+++......|.....|..+..++.. ..+..+|.++.++++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5555555442 234578888888883322234555555554443322 223456777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR 299 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 299 (877)
+.+.. |..+...+..++.-.++++.|..+|++....+ || ..+|....-.+.-.| +.++|.+.+++.++. .|..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G-~~~~a~~~i~~alrL--sP~~ 405 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNE-KIEEARICIDKSLQL--EPRR 405 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcc--Cchh
Confidence 76644 77777777777777777888888888887643 44 334444444444567 778888888876664 2322
Q ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHH
Q 002814 300 ---ITFNSLLAVCSRGGLWEAARNLFN 323 (877)
Q Consensus 300 ---~t~~~ll~~~~~~g~~~~A~~~~~ 323 (877)
......++.|+.. .++.|+++|-
T Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 406 RKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred hHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 2222233344443 3455555543
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.3 Score=48.33 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 276 (877)
+.++--...+..|.+.|+..|..+|+.||+.+-+.
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc
Confidence 34444445566667777777777777777766543
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.43 E-value=0.6 Score=41.53 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
|..++..++.++++.|+++....+++..-. +..+... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 455667777777777777777666655432 2211100 0000 1123446789999999999
Q ss_pred HHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhhcCC
Q 002814 518 ALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFGRSAT 559 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~ 559 (877)
+|+.+|++..|+++++...+ .++.-+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999874 4787788899999987755443
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.40 E-value=0.94 Score=50.04 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
-.+.++..+-+.|..+.|+++..+-. .-.+...+.|+++.|.++.++ ..+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 34555555555555555554443211 123344445555555444322 123444555555555
Q ss_pred HcCCHHHHHHHHHH
Q 002814 416 KLGRFEEALLVCKE 429 (877)
Q Consensus 416 ~~g~~~~A~~~~~~ 429 (877)
+.|+++-|.+.|.+
T Consensus 359 ~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 359 RQGNIELAEECYQK 372 (443)
T ss_dssp HTTBHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 55555555554443
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.39 E-value=1.9 Score=39.28 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444445554444444432 234444444444443
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.7 Score=48.67 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR 419 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 419 (877)
-.+.|.+.|++..|...|++.... . -|.+.-+.++..... ..-..++..|.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------l-------~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------L-------EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------h-------hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 346788888888888888876542 0 011111112221111 1123456677778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCH-HHHHHHH
Q 002814 420 FEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTY-STLIDVYSKGGLY-KEAMQIF 497 (877)
Q Consensus 420 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~-~~A~~~~ 497 (877)
+.+|++...+.+..+ +.|+....--..+|...|+++.|+..|+++++. .|+-... +.|+.+-.+.... +...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877 777877777788888888888888888888875 4443333 3333333332222 2234455
Q ss_pred HHHH
Q 002814 498 REFK 501 (877)
Q Consensus 498 ~~m~ 501 (877)
..|.
T Consensus 350 ~~mF 353 (397)
T KOG0543|consen 350 ANMF 353 (397)
T ss_pred HHHh
Confidence 5554
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.14 E-value=18 Score=43.84 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI----DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
|.-.++.--+.|.+.+|+.++ .|+...+.... .-+...+.+++|.-.|+..-+. .--+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHH
Confidence 333444444555555555544 33444444333 3334456666666665543211 12345
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhcCChhhhHHHHHH
Q 002814 518 ALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSIIDAFGRSATTECTVDDVER 569 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~ 569 (877)
+|..+|+|.+|+.+-.+|... -+.. +-..|+.-+...++.-+|-++..+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 666777777777777766531 1222 225666777777777766665433
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.02 E-value=2.4 Score=47.56 Aligned_cols=178 Identities=13% Similarity=0.139 Sum_probs=118.5
Q ss_pred HHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCH
Q 002814 175 AIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV------YAFSALISAYGR----SGYC 244 (877)
Q Consensus 175 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~----~g~~ 244 (877)
..-+|.-++..= |+ -+..++...+-.|+-+.+.+.+.+..+.+--..+ ..|+..+..++. ....
T Consensus 176 G~G~f~L~lSlL---Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 176 GFGLFNLVLSLL---PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHhC---CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 345666666552 33 4577888899999999999999888764322222 234444544443 4567
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002814 245 QEAISVFNSMKRYNLKPNLVTYNAVID-ACGKGGVDFKHVVEIFDDMLRNG---VQPDRITFNSLLAVCSRGGLWEAARN 320 (877)
Q Consensus 245 ~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~A~~ 320 (877)
+.|.++++.+.+. .|+...|...-. .+...| ++++|++.|++..... .+.....+--+.-.+.-.+++++|..
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 8899999999874 477776655443 355567 9999999999766421 12234455667777888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHH-HHHHHHHcCCH-------HHHHHHHHHchh
Q 002814 321 LFNEMVHRGIDQDIFTYNT-LLDAICKGAQM-------DLAFEIMAEMPA 362 (877)
Q Consensus 321 ~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~-------~~A~~~~~~m~~ 362 (877)
.|..+.+..-- ...+|.- ...++...|+. ++|.++|.+...
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999886321 2223332 23344567777 899999988764
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.01 E-value=3.4 Score=36.32 Aligned_cols=134 Identities=17% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHH---HHHHHHHHHHcCCHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVT---YSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A 388 (877)
.|.+++..++..+.... .+..-||.+|--....-+-+...++++.+-+. .|... ...++.+|.+.|..
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~~--- 85 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNKL--- 85 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcch---
Confidence 46666666666666654 24444554444443333444444444443321 12111 12233333333322
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 389 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
..-...-++.+.+.|+-|+-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++
T Consensus 86 ---------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 ---------------SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 1222334455556666666666666665433 556666666666666666666666666666665
Q ss_pred CC
Q 002814 469 CV 470 (877)
Q Consensus 469 g~ 470 (877)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 53
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.00 E-value=0.81 Score=40.68 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 002814 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSYNTVLS 412 (877)
Q Consensus 365 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~ 412 (877)
..|+..+..+++.+|+..|++..|+++++...+. +++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555554332 44444555555554
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.97 E-value=3.1 Score=46.74 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=123.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHcC---CCCHHH
Q 002814 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN-LKPN-----LVTYNAVIDACGKG---GVDFKH 282 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~ll~~~~~~---g~~~~~ 282 (877)
..-+|.-++.. ++| ....++...+=.|+-+.+++++.+..+.+ +.-. ...|+.++..++.. +.+.+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34456666654 233 45567777888899999999999877632 3211 22456666555443 347899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 283 VVEIFDDMLRNGVQPDRITFNS-LLAVCSRGGLWEAARNLFNEMVHRG---IDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 283 a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
|.++++.+.+. -|+...|.. -.+.+...|++++|.+.|++..... -......+--+...+.-..++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999999986 566655543 3467788999999999999766421 11234556677888999999999999999
Q ss_pred HchhCCCCCCHHHHHHHHH-HHHHcCCH-------HHHHHHHHHHHH
Q 002814 359 EMPAKNISPNVVTYSTMID-GYAKAGRL-------DDALNMFSEMKF 397 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 397 (877)
++.+..-. +..+|.-+.. ++...|+. ++|.++|.+...
T Consensus 330 ~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99986433 3445554443 44567777 899999998754
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=6.8 Score=38.43 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh----c--CCcchhHHHHH-hhccccchHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRL----F--DNQVYGVAHGL-LMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALT 720 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~----~--~~~~~~~~~~l-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 720 (877)
+..+...+.+...++||-..|.+-.. . -+..+...... +..+...++..|++.++..-+.+....+.-.+++-
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 44455556666666666665544321 1 11222222222 22235668888888888765554433333344444
Q ss_pred HHH--HhcCchhhHHHHHHHhh
Q 002814 721 DML--WHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 721 ~~~--~~~g~~~~A~~~~~~~~ 740 (877)
+++ +..|+.+++.++..-+.
T Consensus 233 nLL~ayd~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 233 NLLTAYDEGDIEEIKKVLSSPT 254 (308)
T ss_pred HHHHHhccCCHHHHHHHHcChH
Confidence 433 45677777777665443
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.95 E-value=2.1 Score=47.36 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 378 (877)
..-.+.+++.+.+.|..+.|+++-..-. .-.+...+.|+++.|.++.++.. +...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD------DPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHH
Confidence 3345666666667777776666543221 22344556677777766655443 55667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 458 (877)
..+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| . +|....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHH
Confidence 7777777777777665432 4455556666677666666666665554 1 33333444445666655
Q ss_pred HHHHHH
Q 002814 459 RRMFEQ 464 (877)
Q Consensus 459 ~~~~~~ 464 (877)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.91 E-value=9.2 Score=39.70 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=63.6
Q ss_pred HccCCHHHHHHHHHHHHHcc-ccCCChH----HHHHHHHHHHHhcC-ChHHHHHHHHHHHHc--------CCCCC-----
Q 002814 167 GNRGEWSKAIQCFAFAVKRE-ERKNDQG----KLASAMISILGRLG-KVDLAKNIFETALNE--------GYGNT----- 227 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------g~~~~----- 227 (877)
.+.|+++.|..++.++.... ...+... .++..++..+.+.+ +++.|...++++.+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35788888888888876544 2222211 11222333344445 777776666655432 11122
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 228 VYAFSALISAYGRSGYCQ---EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
..+...|+.+|...+..+ +|..+++.+...... ....+-.-+..+.+.+ +.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~-~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSF-DEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccC-ChhHHHHHHHHHHHh
Confidence 234555566666555443 344455555432211 2334444455555555 566666666666654
No 259
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.84 E-value=12 Score=40.81 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
|.....+++..+++..+..-...+..+|...| -+...|..++.+|..+ ..++-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34445566666766666666667777777655 3566677777777766 456666777777765432 3334444554
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
.|-+ ++.+.+...+.+++..+...... ......|..+....+. +.+.-+.+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~-----------~~i~evWeKL~~~i~d-----------------D~D~fl~l 191 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQN-----------AAIKEVWEKLPELIGD-----------------DKDFFLRL 191 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhh-----------hhHHHHHHHHHHhccc-----------------cHHHHHHH
Confidence 4444 66667767666666554432100 0000122222222111 23334445
Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhh
Q 002814 633 FQKMH-KLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLM 687 (877)
Q Consensus 633 ~~~m~-~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~ 687 (877)
..+.+ ..|..--.+.+.-+-.-|....+++||++++..+.+.|..++.+..+++.
T Consensus 192 ~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 192 QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 55554 34555556667777778888899999999999999888888777666643
No 260
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.80 E-value=0.24 Score=55.73 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=5.4
Q ss_pred HHHHHHHHHcCC
Q 002814 648 FSAILNACSRCN 659 (877)
Q Consensus 648 ~~~ll~a~~~~g 659 (877)
|+-+..+|-++.
T Consensus 719 f~~F~~~~k~~~ 730 (830)
T KOG1923|consen 719 FVRFVRAYKMAR 730 (830)
T ss_pred HHHHHHHHHhhh
Confidence 444444444433
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.70 E-value=3.4 Score=44.92 Aligned_cols=162 Identities=11% Similarity=0.142 Sum_probs=87.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 240 (877)
.++..--+..+.+.-+++-.+++...+ +-..+|..|.. -...-..+|+++|+++++.|-. . +.+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~p---dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~-------lg~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINP---DCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----S-------LGK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhh---hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----h-------hch
Confidence 355555566777777777777877752 22223333222 2345578888888888765311 1 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHH
Q 002814 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAAR 319 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 319 (877)
....+..-..++.+..+...+-..+=..+..++.+.| +.++|++.|++|.+..... +......|+.++...+.+.++.
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 0000000011111222212222223334555566777 7888888888887653221 2345667888888888888888
Q ss_pred HHHHHHHHcCCCC-CHHHHHH
Q 002814 320 NLFNEMVHRGIDQ-DIFTYNT 339 (877)
Q Consensus 320 ~~~~~m~~~g~~~-~~~~~~~ 339 (877)
.++.+..+...+. -...|+.
T Consensus 316 ~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred HHHHHhccccCCchHHHHHHH
Confidence 8888765543222 2344554
No 262
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.46 E-value=0.31 Score=45.34 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHhhcc------c-----cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc-
Q 002814 661 FEDASMLLEELRLFDNQVYGVAHGLLMGY------R-----DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ- 728 (877)
Q Consensus 661 ~~eA~~~~~~~~~~~~~~~~~~~~l~~~~------~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 728 (877)
++.|++.++..-..||.+...++++..++ + ...+++|++=|++++.++| .....+.+|+.+|...|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhh
Confidence 34555555555556666666555542221 1 2356777788888888888 566777788888865543
Q ss_pred ---hhhHHHHHHHh
Q 002814 729 ---KRGAQLVVLEG 739 (877)
Q Consensus 729 ---~~~A~~~~~~~ 739 (877)
..+|..+|+++
T Consensus 86 ~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 86 TPDTAEAEEYFEKA 99 (186)
T ss_dssp ---HHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 23444444443
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=10 Score=38.63 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=54.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 388 (877)
....|++.+|..+|+......-+ +...-..|+.+|...|+.+.|..+++.+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455555566655555554211 23444455556666666666666666555431111112222233334444333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 389 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
..+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333222 2244444445555555555555555544443
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.40 E-value=4.8 Score=36.66 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
+|..+...+.....+.+++.+...+. .+...+|.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444332 233444444444443
No 265
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=0.59 Score=46.70 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=60.4
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCC
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGY 243 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~ 243 (877)
+...|++..|...|..-++..+...-....+--|..++...|++++|..+|..+.+.-.. .-...+.-|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 345666777777777777765544444445666777777777777777777777664221 123566666677777777
Q ss_pred HHHHHHHHHHHHhC
Q 002814 244 CQEAISVFNSMKRY 257 (877)
Q Consensus 244 ~~~A~~~~~~m~~~ 257 (877)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777654
No 266
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.33 E-value=16 Score=40.79 Aligned_cols=371 Identities=11% Similarity=0.087 Sum_probs=205.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHH-HHhcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI-LGRLGKVDLAKNIFETALNE-GYG-NTVYAFSALISAY 238 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~ 238 (877)
....=.+.|..+.+.++|++.++.- +....+|...... ....|+.+..+..|+.+... |.. .....|...|.--
T Consensus 85 fA~~E~klg~~~~s~~Vfergv~ai---p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e 161 (577)
T KOG1258|consen 85 FADYEYKLGNAENSVKVFERGVQAI---PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE 161 (577)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 3334456788999999999998763 3444455554443 33567888899999998764 221 2456888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCC-----CCHHHHHHHHHHHHHC---C-CCCCHHHHHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGG-----VDFKHVVEIFDDMLRN---G-VQPDRITFNSLL 306 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g-----~~~~~a~~~~~~m~~~---g-~~p~~~t~~~ll 306 (877)
..+++......+|++.++. | ..-|+....-| .+.. +..+++.++-...... + ..........-+
T Consensus 162 n~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v 237 (577)
T KOG1258|consen 162 NGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV 237 (577)
T ss_pred hccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH
Confidence 8899999999999999973 2 23333333332 2221 1233333332222210 0 001111111111
Q ss_pred HHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-------CCCCCHHHHHHHHHH
Q 002814 307 AVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------NISPNVVTYSTMIDG 378 (877)
Q Consensus 307 ~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~~~~~li~~ 378 (877)
+--.. .+.++++.....+... ..-.++-..-...+.+..|++-..+ -..++..+|+.-++.
T Consensus 238 ~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 238 KDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred hhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 11111 1222222222222211 1111222222233333344433322 123356788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHH
Q 002814 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR--KDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~ 456 (877)
-.+.|+.+.+.-+|++..-- +..=...|--.+.-....|+.+-|..++....+--++ |......+.+ .-..|+++
T Consensus 307 ~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~ 383 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFD 383 (577)
T ss_pred hhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHH
Confidence 89999999999888886532 1111223333344444558888888887766554433 3333333333 33467999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCChHH
Q 002814 457 EVRRMFEQMKADCVSPNLL-TYSTLIDVYSKGGLYKEAM---QIFREFKQAGLKADVVLYSALIDA-----LCKNGLVES 527 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~ 527 (877)
.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..... |- -+......+.-- +.-.++.+.
T Consensus 384 ~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~-~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 384 DAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GK-ENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred HHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cc-cCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998873 5533 2233344556678888777 33333322 21 122222222221 233678899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 002814 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (877)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 558 (877)
|..++.+|.+. ..++...|..++..+...+
T Consensus 460 a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 460 ARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 99999999886 4556678888888776555
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.27 E-value=3.7 Score=42.51 Aligned_cols=130 Identities=17% Similarity=0.134 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH--
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADCV-----SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ----AGLKADVVLY-- 512 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~-- 512 (877)
++..++...+.++++++.|+...+.-. .....++..|...|.+..++++|.-+..+..+ .++.--..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 355555566666667666666543211 11234566677777777777776655544432 2222111122
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 513 ---SALIDALCKNGLVESAVSLLDEMTK----EGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 513 ---~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
..|.-++-..|...+|.+..++..+ .|-++... ...++.+.|...|+.|.|..-|+.++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2334466778888888887777643 35333332 4457788888999999988888877754
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.27 E-value=2.3 Score=37.11 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHcC
Q 002814 200 ISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY-NLKPNL--VTYNAVIDACGKG 276 (877)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~ll~~~~~~ 276 (877)
.-++...|+++.|++.|.+.+..-+ -...+||.-..++.-.|+.++|++-+++..+. |.+-.. .+|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3457888999999999999988643 37889999999999999999999999988764 333111 2233333446667
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q 002814 277 GVDFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 277 g~~~~~a~~~~~~m~~~g~ 295 (877)
| +.+.|..-|+..-+.|-
T Consensus 129 g-~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 G-NDDAARADFEAAAQLGS 146 (175)
T ss_pred C-chHHHHHhHHHHHHhCC
Confidence 7 78888888888877663
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.26 E-value=20 Score=41.46 Aligned_cols=243 Identities=16% Similarity=0.108 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDAC-----GKGGVDFKHVVEIFDDMLR-------NGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~g~~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~ 311 (877)
..+|.++++...+.| +...-..+...+ .... |.+.|+.+|+.+.. .| +......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~-d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQ-DLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 456677777666544 333332222222 2333 67777777777765 33 22344455555555
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHH----H
Q 002814 312 GG-----LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK-GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA----K 381 (877)
Q Consensus 312 ~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~----~ 381 (877)
.. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 32 556677777777766532 33332222222222 23566777777777766632 22222222221 2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH---HH----cC
Q 002814 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL-GGY---GK----QG 453 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~---~~----~g 453 (877)
..+.+.|..++++.-+.| .+-..--...+..+.. ++.+.+...+..+.+.|.+ ...+-...+ ... .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 345677777777777776 2222222222233333 6666666666666655532 111111111 111 01 12
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHC
Q 002814 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG----GLYKEAMQIFREFKQA 503 (877)
Q Consensus 454 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~A~~~~~~m~~~ 503 (877)
+.+.+..++.+....| +......|.+.|... .+.+.|...+......
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 4555566666655544 455555555555443 2356666666665554
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.13 E-value=13 Score=38.88 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSAL 515 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~l 515 (877)
.++.++++.+.+.|++.....|..+
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHH
Confidence 3455566666666655555554444
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.09 E-value=12 Score=38.72 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 406 SYNTVLSIYAKLGRFE---EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 406 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
++..++.+|...+..+ +|..+++.+.... .....++-.-+..+.+.++.+++.+.+.+|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4556666776666543 4455555554332 2234455455566666777777778887777652 212333444444
Q ss_pred HHHh--cCCHHHHHHHHHHHHHCCCCCCH
Q 002814 483 VYSK--GGLYKEAMQIFREFKQAGLKADV 509 (877)
Q Consensus 483 ~~~~--~g~~~~A~~~~~~m~~~g~~p~~ 509 (877)
.+.+ ......|...++.++...+.+..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4321 12334555556555544344433
No 272
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=1.2 Score=44.71 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHH
Q 002814 194 KLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLK-P-NLVTYNAV 269 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~l 269 (877)
..|+.-+. +.+.|++..|.+.|...++..+. -...++-.|...+...|++++|..+|..+.+.-.+ | -..++--|
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 36666555 55778899999999999987433 12456677899999999999999999999864322 2 23566677
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
..+..+.| +.++|...|+++++.
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHH
Confidence 77788888 899999999999986
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.85 E-value=8.3 Score=40.17 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC---CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCC-
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGK--GG---VDFKHVVEIFDDMLRNGV---QPDRITFNSLLAVCSRGGL- 314 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g---~~~~~a~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~- 314 (877)
+++.+.+++.|.+.|++-+..+|-+....... .. ....++..+|+.|.+.-. .++...+..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666667776666665555442222222 11 023466677777766532 2344555555443 2222
Q ss_pred ---HHHHHHHHHHHHHcCCC
Q 002814 315 ---WEAARNLFNEMVHRGID 331 (877)
Q Consensus 315 ---~~~A~~~~~~m~~~g~~ 331 (877)
.+.++.+|+.+.+.|+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 24455555555555544
No 274
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.84 E-value=16 Score=39.35 Aligned_cols=141 Identities=12% Similarity=0.161 Sum_probs=84.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--
Q 002814 201 SILGRLGKVDLAKNIFETALNEGYGNTV------YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-- 272 (877)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-- 272 (877)
-.+.+.+++.+|.++|.++-+.. ..+. ...+.++++|... +.+.....+....+. .|+ ..|-.+..+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~ 88 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FGK-SAYLPLFKALV 88 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cCC-chHHHHHHHHH
Confidence 34778999999999999986642 1122 2334566777643 455555555555542 122 233333333
Q ss_pred HHcCCCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCH
Q 002814 273 CGKGGVDFKHVVEIFDDMLRN--GVQP------------DRITFNSLLAVCSRGGLWEAARNLFNEMVHR----GIDQDI 334 (877)
Q Consensus 273 ~~~~g~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~~ 334 (877)
+.+.+ .+.+|.+.+..-... +-.+ |-..=+..+..+...|++.+++.++++|... .+.-+.
T Consensus 89 ~Y~~k-~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 89 AYKQK-EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHhh-hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 34556 788888887766543 2111 1122244566777888888888888777654 334677
Q ss_pred HHHHHHHHHHHHc
Q 002814 335 FTYNTLLDAICKG 347 (877)
Q Consensus 335 ~~~~~li~~~~~~ 347 (877)
.+|+.++-++.+.
T Consensus 168 d~yd~~vlmlsrS 180 (549)
T PF07079_consen 168 DMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHhHH
Confidence 7888777666653
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.46 E-value=0.31 Score=34.06 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKR 185 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 185 (877)
+..+...|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333444444455555555555555444
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.19 E-value=0.39 Score=33.53 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHH
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVA 682 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 682 (877)
++..+..+|...|++++|.++|+++++.+|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 455677777777777777777777777666665443
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=29 Score=40.42 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002814 196 ASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
...-++.+.+...++.|..+...- +..++ ........+.+.+.|++++|...|-+.... +.|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 456778888888888888776543 22222 122333344455789999999888876642 2332 345555
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 353 (877)
.... ....-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.- .+-....+..+.+.+-.++|
T Consensus 408 Ldaq-~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 408 LDAQ-RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred cCHH-HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 5555 667777888888888876 55556778899999999888776655444 2211 11234456666667777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 354 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
..+-.+... ....... .+-..+++++|++.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 666554432 2333333 334567888888888765
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=29 Score=40.16 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=56.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-++.+.+.+.+++|+.+-+......... ....+....|..|...|++++|..+.-.|... +..-|.-.+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3666666667777766654433332111 12345566666666677777776666666542 556666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
++..+-.. -+.....+-+...|..+|..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 55443222 22222122344556666666554
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.86 E-value=7.5 Score=34.26 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
+...++.....|+-++-.+++.++.+. -.++....-.+..+|.+.|+..++-+++.+.-++|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333344444444444444444444331 12334444444444444444444444444444433
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=11 Score=38.72 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLW 315 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~ 315 (877)
..|++.+|-..++++.+. .+-|..+++..=++|.-.| +...-...+++.+.. ..+|. +.-..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G-~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG-NQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc-chhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 455666666666666553 2235666666666666666 555555555555532 12222 1112222333455666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAE 359 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (877)
++|++.-++..+.+ +.|...-.++...+-..|++.++.+.+.+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666655555543 23455555555555556666666555544
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.60 E-value=12 Score=35.04 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
+.+..+.+.++.|+...|..+++.+.+.| .+. .+..++..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~-~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG-QFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 33444455566666667777777777666 443 2334445555555554443332222 2223334433344332
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 329 GIDQDIF-TYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 329 g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
.. .+..+++.+...|++-+|+++.+..
T Consensus 88 -----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 11 3455566666667777776666654
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.43 E-value=11 Score=34.92 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=60.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH--HHcCCC
Q 002814 203 LGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDA--CGKGGV 278 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~--~~~~g~ 278 (877)
+...+..++|...|..+.+.|...- +-...-........|+-..|+..|++.-.....|-.. -...|=.+ +...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g- 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG- 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc-
Confidence 3445556666666666655554321 1122222333445566666666666665443333332 11111111 33455
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 327 (877)
.+++.....+-+...+-..-...-..|.-+-.+.|++..|.++|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5666555555554443333333445555555666666666666666654
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.31 E-value=26 Score=38.39 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS-AYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 257 (877)
+.+..+|...+..+.+.+...+...+|..|+...+. ++..|-.-.. -|-.+-.++.|..+|.+-.+.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 334556666666555555566666666666554221 3333322221 222233366666666665553
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.26 E-value=4.2 Score=38.48 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=60.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc------ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY------RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
+-+.+.|++++|..-|.+++..-|....-...++.+- +.+.|+.|+.--.++++++| .......--+.+|-++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 4455678888888888888877665554444443322 46788889988888889888 4444444456678888
Q ss_pred CchhhHHHHHHHhhh
Q 002814 727 GQKRGAQLVVLEGKR 741 (877)
Q Consensus 727 g~~~~A~~~~~~~~~ 741 (877)
.++++|.+-+++..+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877766544
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.99 E-value=13 Score=34.47 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 002814 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT-FNSLL 306 (877)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll 306 (877)
..|..-+. +.+.+..++|+.-|..+.+.|..-= +..--.+.......| +...|...|++.-+....|-..- ...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg-dta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG-DTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc-cHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444333 3456667777777777776554311 111111222345566 77777777777766544443331 11111
Q ss_pred --HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 307 --AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 307 --~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
-.+...|.+++.....+-+...+-+.-...-.+|.-+-.+.|++.+|...|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123456777777776666655544444455566666667777777777777776654
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=36 Score=39.39 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 002814 200 ISILGRLGKVDLAKNIFETALNEGYGN---TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (877)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 276 (877)
++.+.+.+.+++|+.+.+..... .+ ...++...|..+.-.|++++|-...-+|.. -+..-|-..+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 56667778888888877765432 22 346788899999999999999999999986 3677788777777776
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 277 g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
+ +...... -+-......+...|..++..|..
T Consensus 437 ~-~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 D-QLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c-ccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 6 4433222 22221112344455555555544
No 287
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.71 E-value=17 Score=35.16 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAIS 249 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 249 (877)
|-|..|+--|..++... |.-+.+|+-+.--+...|+++.|.+.|+...+.++.-+-...|.-| ++---|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 33444444444444442 3333455555555555556666666555555543322211222111 1223455555555
Q ss_pred HHHHHHh
Q 002814 250 VFNSMKR 256 (877)
Q Consensus 250 ~~~~m~~ 256 (877)
-|...-.
T Consensus 155 d~~~fYQ 161 (297)
T COG4785 155 DLLAFYQ 161 (297)
T ss_pred HHHHHHh
Confidence 5444443
No 288
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.55 E-value=1.7 Score=40.61 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCH----HHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHH
Q 002814 625 EILCILGVFQKMHKLKIKPNV-VTFSAILNACSRCNSF----EDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALS 699 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~----~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~ 699 (877)
-+++|+.-|++.+. +.|+. .++.++++||...+.+ .+| ...+++|.+
T Consensus 50 miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A--------------------------~~~F~kA~~ 101 (186)
T PF06552_consen 50 MIEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEA--------------------------EEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHH--------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHH--------------------------HHHHHHHHH
Confidence 56677777777776 77754 5677777777654321 112 234678889
Q ss_pred HHHHHhhcCCCcchhHHHH
Q 002814 700 LFDEVKLMDSSTASAFYNA 718 (877)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~ 718 (877)
.|++++..+| .|..+..+
T Consensus 102 ~FqkAv~~~P-~ne~Y~ks 119 (186)
T PF06552_consen 102 YFQKAVDEDP-NNELYRKS 119 (186)
T ss_dssp HHHHHHHH-T-T-HHHHHH
T ss_pred HHHHHHhcCC-CcHHHHHH
Confidence 9999999999 44444443
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.49 E-value=0.6 Score=30.25 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCc
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (877)
.+|..++.+|...|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35777888888888888888888888877775
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.05 E-value=3.3 Score=42.25 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA-----DCVSPNLLTYSTL 480 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 480 (877)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445555555556666666666655554 44555666666666666666666666555543 3444444444433
No 291
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=52 Score=39.51 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
|..|+..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 67788888888888888888887765
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.86 E-value=3.3 Score=42.18 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYNS 549 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 549 (877)
.++..++..+...|+.+.+.+.++++..... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4556677777778888888888888877653 4777888888888888888888888887764 588888887777
Q ss_pred HHHHH
Q 002814 550 IIDAF 554 (877)
Q Consensus 550 li~~~ 554 (877)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
No 293
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.72 E-value=48 Score=38.93 Aligned_cols=388 Identities=9% Similarity=0.000 Sum_probs=204.1
Q ss_pred chhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002814 139 DVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFET 218 (877)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (877)
...+...++..+.-+.....-..-+..+.+.++|...++++. . ++.+...-.....++...|+.++|.+....
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~---~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~ 154 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----E---KPKPVEARCNYYYAKWATGQQQEAWQGAKE 154 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444443222211222335556677888887776332 1 244555666778888889998888888777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----------CCHHHHHH
Q 002814 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAI--SVFNSMKRYNLKPNLVTYNAVIDACGKGG-----------VDFKHVVE 285 (877)
Q Consensus 219 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----------~~~~~a~~ 285 (877)
+-..|.. ....++.++..+.+.|.+.... +=++.+... .+...-..++..+.... .+...+..
T Consensus 155 lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~---~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~ 230 (644)
T PRK11619 155 LWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKA---GNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVET 230 (644)
T ss_pred HhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHH
Confidence 7655543 4668888888888777654432 222222222 12222223332221000 01111211
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 286 IFDDMLRNGVQPDRITFNSLLAVCS--RGGLWEAARNLFNEMVHRG-IDQD--IFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 286 ~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
++. .+.++...-..++-++. ...+.+.|..++..+.... +.+. ..++..+....+..+...+|.+.++..
T Consensus 231 ~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~ 305 (644)
T PRK11619 231 FAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDV 305 (644)
T ss_pred Hhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhc
Confidence 111 12223322221222222 2456688999988874442 2222 234455554444544467778888776
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV 440 (877)
Q Consensus 361 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 440 (877)
..... |.......+....+.++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+.. ..
T Consensus 306 ~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~--- 376 (644)
T PRK11619 306 IMRSQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR--- 376 (644)
T ss_pred ccccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---
Confidence 54322 44445555566668999999988888875532 22344455566777778999999999998753 12
Q ss_pred HHHHHHHHHHHcCCHHHH-HH---HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEV-RR---MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A-~~---~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 516 (877)
+|..++.+ .+.|..-.- .. .-... +..+. -..-+..+...|+...|...+..+.+. .+......+.
T Consensus 377 ~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~----~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la 446 (644)
T PRK11619 377 GFYPMVAA-QRLGEEYPLKIDKAPKPDSA----LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLA 446 (644)
T ss_pred CcHHHHHH-HHcCCCCCCCCCCCCchhhh----hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHH
Confidence 23333221 122221000 00 00000 00000 112344556778888888888887764 3455555666
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhhcCChhhhH
Q 002814 517 DALCKNGLVESAVSLLDEMTKE-----GIRPNVVTYNSIIDAFGRSATTECTV 564 (877)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~ 564 (877)
....+.|..+.++......... .+ |. .|...+..+++.-.++.++
T Consensus 447 ~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 447 RYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--AWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--chHHHHHHHHHHcCCCHHH
Confidence 6666778777777665543221 11 11 3556666666655565543
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.60 E-value=33 Score=36.96 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=32.1
Q ss_pred CchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 002814 138 DDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVK 184 (877)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 184 (877)
+...+..+++. .+.-.+.+..+...+.++|+.+.|.++.++++-
T Consensus 25 Dp~~l~~ll~~---~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 25 DPNALINLLQK---NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred CHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555544 344567778888889999999999988888764
No 295
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.53 E-value=85 Score=41.52 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=85.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+..+-.+.+.|.+|+-.++.-.............+-.+-..|+..+++|....+...-.. .++ .+ .-|-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 344555677788888777762111000111233445555588888888887777764221 122 22 244456677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhCCCHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL-LAVCSRGGLWEAARN 320 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~ 320 (877)
|++++|...|+.+.+.+.. ...+++-++......+ .+...+-..+-.... ..+....++++ +.+-.+.++++....
T Consensus 1463 g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~-~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQ-HLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhccc-chhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 8888888888888875422 3667776666666666 666666544444332 22222333332 344466677776666
Q ss_pred HHH
Q 002814 321 LFN 323 (877)
Q Consensus 321 ~~~ 323 (877)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.42 E-value=0.86 Score=46.44 Aligned_cols=92 Identities=17% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhh
Q 002814 484 YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 563 (877)
|.+.|++++|+.+|...+... +-+.+++..-..+|.+..++..|..-.+..+..+ .--...|+.-..+-...|..++|
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 444555555555554444322 1144455444555555555555544444443321 00111344444444445555666
Q ss_pred HHHHHHHhhhhhhh
Q 002814 564 VDDVERDLGKQKES 577 (877)
Q Consensus 564 ~~~~~~~l~~~~~~ 577 (877)
.+.++.+|++.|+.
T Consensus 185 KkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 185 KKDCETVLALEPKN 198 (536)
T ss_pred HHhHHHHHhhCccc
Confidence 66666666665554
No 297
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.41 E-value=30 Score=36.16 Aligned_cols=158 Identities=11% Similarity=0.060 Sum_probs=72.6
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhc
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE--GYGN---TVYAFSALISAYGRS 241 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~~---~~~~~~~li~~~~~~ 241 (877)
....+.++|+..+...+..-.........+..+..+.++.|.+++++..--..+.. .... -..+|..|.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554432111223345666677777777777665432211110 0010 123444455555555
Q ss_pred CCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhC
Q 002814 242 GYCQEAISVFNSMKRY-NLKPN---LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-----QPDRITFNSLLAVCSRG 312 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~ 312 (877)
-++.+++.+-..-... |..|. -...-++..+....+ .++++++.|+...+..- -....++..|...|.+.
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls-~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS-VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH-HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555555554443321 11110 011222334444444 56666666666554211 11123455566666666
Q ss_pred CCHHHHHHHHHHH
Q 002814 313 GLWEAARNLFNEM 325 (877)
Q Consensus 313 g~~~~A~~~~~~m 325 (877)
.++++|.-+..+.
T Consensus 176 ~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 176 KDYEKALFFPCKA 188 (518)
T ss_pred HhhhHHhhhhHhH
Confidence 6666655544443
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=24 Score=34.56 Aligned_cols=54 Identities=19% Similarity=0.402 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHH---HH--HHHHcC-CCHHHHHHHHHHHHhcCCcc
Q 002814 625 EILCILGVFQKMHKLKIKPNVVTFSA---IL--NACSRC-NSFEDASMLLEELRLFDNQV 678 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~~t~~~---ll--~a~~~~-g~~~eA~~~~~~~~~~~~~~ 678 (877)
++.+|+.+|++.....+.-+..-|+. ++ ..|.-+ ++.-.+...+++-...+|.-
T Consensus 169 qY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 169 QYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 67778888888766444433333322 11 122222 44445566666666666643
No 299
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.84 E-value=24 Score=34.19 Aligned_cols=180 Identities=19% Similarity=0.139 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH
Q 002814 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI 286 (877)
Q Consensus 207 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 286 (877)
|-.+.|+-=|.+.+...+. -+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..|. .| ++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~g-R~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GG-RYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cC-chHhhHHH
Confidence 4444455555555543222 367888888888899999999999999988654333334444444443 45 78888877
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 287 FDDMLRNGVQ-PDRITFNSLLAVCSRGGLWEAARNLFN-EMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 287 ~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
+.+.-+.... |-...|--++ -..-+..+|..-+. +..+ .|..-|...|-.|.- |++. ...+++++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7777655322 2222232222 22335555554433 3332 243444443333321 1111 011222222110
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 365 IS------PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 365 ~~------pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
-. .=..||--+.+-|...|+.++|..+|+-.+..
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 00 01244555566666666666666666655543
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.48 E-value=22 Score=33.33 Aligned_cols=102 Identities=14% Similarity=0.215 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
.++++.+.+.++.++...+..+++.+.+.|++..... ++..++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3444555566677777777777777777776554333 334444444433332222111 1222222222222221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 364 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
=...+..+++.+...|++-+|+.+.+..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012445555666666666666665543
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.43 E-value=0.78 Score=30.31 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 715 FYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
.|+.|+.+|.+.|++++|..++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 37889999999999999999999865
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.29 E-value=29 Score=34.59 Aligned_cols=183 Identities=15% Similarity=0.238 Sum_probs=89.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHH
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFL---GI--GLDRVSYNTVLSIYAKLGRFEEALLVCKEMES----S-GIRKDAVTYN 443 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~---g~--~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~ 443 (877)
.+|..+.+.|++++.++.|++|... .+ .-+..+.|++++..+...+.+.-.+.|+.-.+ . +-+.-..|-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3455555555555555555554321 00 12334456666655555554444444332211 1 0011112334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADCVS-----------PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG-LKADVVL 511 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~ 511 (877)
.|...|...|.+.+..+++.++....-. .=...|..-|++|....+-.+...+|++.+... -.|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 5566666667777777777666543111 113556777777777777777777777665321 1233333
Q ss_pred HHHHHH-----HHHHcCChHHHHHH-HHHHH---HCCCCCCHHH---HHHHHHHHhhcC
Q 002814 512 YSALID-----ALCKNGLVESAVSL-LDEMT---KEGIRPNVVT---YNSIIDAFGRSA 558 (877)
Q Consensus 512 ~~~li~-----~~~~~g~~~~A~~~-~~~m~---~~g~~p~~~~---~~~li~~~~~~g 558 (877)
. .+|+ ...+.|++++|..- |+... +.| .|...| |..|...+.+.|
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcC
Confidence 2 2333 23466778777643 33333 233 233332 444555555544
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.12 E-value=5 Score=40.77 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC
Q 002814 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY---NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 222 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~ 298 (877)
.|....+.+-..++..-....++++++..+-+++.. -..|+. +-.+.++.|.+- +.++++.++..-++.|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky--~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKY--DPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHcc--ChHHHHHHHhCcchhccccc
Confidence 344445555566666666677888888888777642 112221 222344444444 57888888888888899999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
.++++.+|+.+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888887777654
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.09 E-value=1 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCc
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (877)
.+..+..++...|++++|++.|+++.+.+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556777778888888888888887776664
No 305
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.91 E-value=10 Score=34.31 Aligned_cols=78 Identities=18% Similarity=0.068 Sum_probs=57.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
.-.....+.|++++|++.|+.+..+-+. -...+.-.|+.+|.+.+++++|+..+++.++..+.--.+-|...+.+++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3445566889999999999999876321 23456777889999999999999999999986544334556666666553
No 306
>PRK09687 putative lyase; Provisional
Probab=87.90 E-value=36 Score=35.24 Aligned_cols=234 Identities=12% Similarity=0.065 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHchhCCCCCCHHHH
Q 002814 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM----DLAFEIMAEMPAKNISPNVVTY 372 (877)
Q Consensus 297 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~~~ 372 (877)
+|.......+..+...|.. ++...+..+.+. +|...-...+.++++.|+. +++..++..+... .+|...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3444555555555555542 233333333332 3555556666666666652 4566666655322 2355555
Q ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 373 STMIDGYAKAGRL-----DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 373 ~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
...+.++...+.. ..+.+.+..+.. .++..+-...+.++.+.++ +++...+-.+.+ .+|..+-..-+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 5555555444321 223333333332 2355555566666666665 455666655554 234445445555
Q ss_pred HHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 002814 448 GYGKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (877)
Q Consensus 448 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 526 (877)
++++.+ +...+...+..+.. .+|..+-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555543 23456666666553 3466666777777777776 45666665655543 2 234566777777774
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 002814 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 555 (877)
+|+..+..+.+. .||..+-...+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777763 346666655555553
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.48 E-value=5.6 Score=37.94 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=38.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (877)
.+..+...|.+.|+++.|++.|.++............++-.+|+.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445666677777777777777776654333333334555666666666777666666655543
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.47 E-value=1 Score=28.96 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.+|..++.+++..|++++|.+.+.++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999988754
No 309
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.06 E-value=1.1 Score=29.63 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (877)
+|+.|..+|.+.|++++|.++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999865
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.94 E-value=4.8 Score=38.16 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=45.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+.+.+...+++++|..-+.+.+.......-...+-..|.+.....|.+|+|..+++.....+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 445555566666666666665543211111111223344555555666666666655543321 222233344555555
Q ss_pred CCHHHHHHHHHHHHhC
Q 002814 242 GYCQEAISVFNSMKRY 257 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~ 257 (877)
|+-++|+.-|++..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666555543
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.93 E-value=0.73 Score=30.02 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=12.2
Q ss_pred CChHHHHHHHHHHHHhcCChHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAK 213 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~ 213 (877)
|.+..+|..+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445555555555555555543
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.64 E-value=27 Score=32.34 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=49.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
.-.+.++.+++..+++.+.-..+. ....-..-...+.+.|++.+|+.+|+++...+ |.......|+..|.... .-.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~-~D~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL-GDP 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc-CCh
Confidence 334566777777777777654322 12222223344667788888888888876543 33344445555554443 222
Q ss_pred HHHHHHHHHHHCCCCCC
Q 002814 282 HVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~ 298 (877)
.-..+-+++...+..|+
T Consensus 95 ~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 95 SWRRYADEVLESGADPD 111 (160)
T ss_pred HHHHHHHHHHhcCCChH
Confidence 33334444555543333
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.42 E-value=16 Score=34.83 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPN-----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
+-+.+.|++++|..-|...++.. ++. .+.|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34556667777776666666642 211 122333334455555555555555555544311 11111122334445
Q ss_pred cCChHHHHHHHHHHHH
Q 002814 522 NGLVESAVSLLDEMTK 537 (877)
Q Consensus 522 ~g~~~~A~~~~~~m~~ 537 (877)
..++++|++-|+++++
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5555555555555554
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.41 E-value=9.7 Score=36.31 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+..+.+.|++.|+.++|++.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444445555555555555555444322222 122344444444555555554444433
No 315
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=67 Score=38.83 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=10.9
Q ss_pred HHhcCChHHHHHHHHHHH
Q 002814 203 LGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~ 220 (877)
+.+.+++++|.++...|.
T Consensus 1007 ~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1007 SIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHhhccHHHHHHHHHHHh
Confidence 445566666666666665
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.27 E-value=7.8 Score=35.72 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=50.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH-hhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-LMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
+.-.+.++.+++..+++-++...|+...+-..- ......|+|.+|+.+|+++.+..+ .....---++.+|...|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~-~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP-GFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHcCC
Confidence 344577899999999999998888766542221 112267899999999999876665 333333445556665655
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.14 E-value=36 Score=33.42 Aligned_cols=85 Identities=6% Similarity=0.038 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHC--CCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHH---HHHhh----cc-cc
Q 002814 625 EILCILGVFQKMHKL--KIKPNVVT---FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVA---HGLLM----GY-RD 691 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~--g~~Pd~~t---~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~---~~l~~----~~-~~ 691 (877)
+++.|+..|++.-+. |-.-+... +.-+..--+..+++++|+++|++.....-++...- .++++ .. -.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 455566666655431 21112221 22222233466889999999999764322221111 11111 11 22
Q ss_pred chHHHHHHHHHHHhhcCC
Q 002814 692 NIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~ 709 (877)
.+.-.|...+++-.+++|
T Consensus 209 ~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDP 226 (288)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 444445555566667777
No 318
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.10 E-value=45 Score=34.52 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHH
Q 002814 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN----TVLSIYAKLGRFEE 422 (877)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~----~li~~~~~~g~~~~ 422 (877)
.|+..+|-..++++.+. .+.|...++-.=++|.-.|+.+.-...++++.-. ..+|...|. ...-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666666666666654 3346666666666666777776666666666543 133332222 22233446677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 002814 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-N---LLTYSTLIDVYSKGGLYKEAMQIFR 498 (877)
Q Consensus 423 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~---~~t~~~li~~~~~~g~~~~A~~~~~ 498 (877)
|.+.-++..+.+ +.|...-.++...+...|+..++.++..+-... ..- + ...|--..-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 777777776665 566666677777777777777777766553321 000 0 1112122223445577788887776
Q ss_pred HH
Q 002814 499 EF 500 (877)
Q Consensus 499 ~m 500 (877)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 319
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=41 Score=33.97 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHH
Q 002814 479 TLIDVYSKGGLYKEAMQIFR----EFKQAGLKADVVLYSALI-DALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 536 (877)
-+|..+.+.|.+.+|+.+.. ++++..-+++.++...+= .+|....++.++..-+...+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence 46777778888888876543 344444445544433332 24444455555544444443
No 320
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=11 Score=38.41 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPN--LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 434 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
|......+...++..-....+++.+...+-++...- ..++ ..+|-.++ ..-+.++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 334445555556666566667777777766665431 1112 22332222 23356677777777777788888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
..+++.+|+.+.+.+++.+|..+...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877777666543
No 321
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.22 E-value=66 Score=37.69 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCC
Q 002814 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV------DFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~~a~~~~~~m~~~g~ 295 (877)
.+|- +|-.+.|+|++++|.++..+.... .......+...+..|..... .-++...-|.+..+...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3554 566777899999999988555432 23344556667777765420 12455566666665533
No 322
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.32 E-value=1.8 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.28 E-value=17 Score=40.53 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=51.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 318 (877)
.+.|+++.|.++..+.. +..-|..|.++....+ ++..|.+.|.+... |..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~-~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG-ELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc-cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 35566666655554432 4455666666666666 56666666555432 33444455555555544
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 319 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
..+-....+.|.. | . -.-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~~-N-~----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN-N-L----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc-c-h----HHHHHHHcCCHHHHHHHHHhc
Confidence 4444444444422 1 1 122344556666666665543
No 324
>PRK09687 putative lyase; Provisional
Probab=83.97 E-value=57 Score=33.82 Aligned_cols=121 Identities=16% Similarity=-0.015 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA-QMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
+..+-...+.++.+.++ +++...+-.+.+. +|..+-..-+.++.+.+ ....+...+..+... +|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 33333344444444444 3344444444432 23334444444444332 122344444443332 2444444445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (877)
.++.+.|+ ..|+..+.+..+.+ + .....+.++...|.. +|...+..+.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555544 23444444333322 1 122334444444443 34444444443
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.88 E-value=53 Score=33.43 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
+.....|..+|.+.+|.++.++.+..+ +.+...|-.|+..+...|+--.|.+-+++|.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456677777777777777766654 3466666677777777777666766666664
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.82 E-value=41 Score=34.23 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=27.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 412 SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
..|..+|.+.+|.++.++.+..+ +.+...|-.|+..|...|+--.|.+.++++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555555555555555555444 444455555555555555544444444443
No 327
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.27 E-value=9.5 Score=37.59 Aligned_cols=20 Identities=55% Similarity=0.886 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 002814 61 NAPKPAATSTTVAPNPKPFH 80 (877)
Q Consensus 61 ~~~~p~~~~~~~~~~~~~~~ 80 (877)
+.|.|..+++...+.+.++.
T Consensus 249 nnP~p~ySst~~ap~ps~f~ 268 (338)
T KOG0917|consen 249 NNPAPVYSSTGVAPNPSTFF 268 (338)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 33444444444444444443
No 328
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.24 E-value=11 Score=38.77 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 002814 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (877)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 276 (877)
.....+..++.+|+.-.-.++|+..+++..+.|+- +...|---.+.+.+.
T Consensus 297 ~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsRe 346 (365)
T KOG2391|consen 297 CTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSRE 346 (365)
T ss_pred ccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHH
Confidence 34556666777777666677777777777766654 555555444544443
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.17 E-value=1e+02 Score=36.19 Aligned_cols=404 Identities=14% Similarity=0.124 Sum_probs=201.0
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHccccCCCh---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHHHHH
Q 002814 161 FLLRELG-NRGEWSKAIQCFAFAVKREERKNDQ---GKLASAMISILGRLGKVDLAKNIFETALNEGYG----NTVYAFS 232 (877)
Q Consensus 161 ~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~ 232 (877)
.+...|. ...++++|...+++++.......-. ......++..+.+.+... |....++.++.--. .-...|.
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 3555555 5778999999999887654321111 122345567777777666 99988887663111 1223333
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCC---------CC
Q 002814 233 AL-ISAYGRSGYCQEAISVFNSMKRYN---LKPNLVTYNAVIDACG--KGGVDFKHVVEIFDDMLRNGV---------QP 297 (877)
Q Consensus 233 ~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~g~~~~~a~~~~~~m~~~g~---------~p 297 (877)
-+ +..+...+++..|++.++.+...- ..|-..++-.++.+.. ..+ ..+++.+..+.+..... .|
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 33 333334479999999998886532 3344555555665543 334 46677777777643211 23
Q ss_pred CHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHc---C--C---C----------------------CCHHHH--------
Q 002814 298 DRITFNSLLAVCS--RGGLWEAARNLFNEMVHR---G--I---D----------------------QDIFTY-------- 337 (877)
Q Consensus 298 ~~~t~~~ll~~~~--~~g~~~~A~~~~~~m~~~---g--~---~----------------------~~~~~~-------- 337 (877)
-..+|..+++.++ ..|++..+...++++.+. . . + +..+.|
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~ 301 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYA 301 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHH
Confidence 4566777776654 567766766665554321 0 0 0 111111
Q ss_pred -HHHHHH--HHHcCCHHHHHHHH-------HHch-hCCCCC--------CHHHHHHHHHH---------HHHcCCHHHHH
Q 002814 338 -NTLLDA--ICKGAQMDLAFEIM-------AEMP-AKNISP--------NVVTYSTMIDG---------YAKAGRLDDAL 389 (877)
Q Consensus 338 -~~li~~--~~~~g~~~~A~~~~-------~~m~-~~g~~p--------d~~~~~~li~~---------~~~~g~~~~A~ 389 (877)
.-++.+ ++..+..++|.+.+ ++.. .....+ +...|...+.. .+-.+++..|.
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~ 381 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT 381 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 112222 23444444554444 4444 111111 11223222222 34478899999
Q ss_pred HHHHHHHHCCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH----HHHH
Q 002814 390 NMFSEMKFLGI-GLD-------RVSYNTVLSIYAKLGRFEEALLVCK--------EMESSGIRKDAVTYNAL----LGGY 449 (877)
Q Consensus 390 ~~~~~m~~~g~-~pd-------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~l----i~~~ 449 (877)
..+++|..... .|+ ...+....-.+-..|+.+.|+..|. .....+...+..++..| |.-+
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~ 461 (608)
T PF10345_consen 382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY 461 (608)
T ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh
Confidence 99998875421 111 2222233334456799999999997 44455544444444332 1112
Q ss_pred HHcCCHHH--HHHHHHHHHHC-C--CCCCHHHHHHH-HHHHHhcCC--HHHHHHHHHHHH-----HCCC-CCCHHHHHHH
Q 002814 450 GKQGKYDE--VRRMFEQMKAD-C--VSPNLLTYSTL-IDVYSKGGL--YKEAMQIFREFK-----QAGL-KADVVLYSAL 515 (877)
Q Consensus 450 ~~~g~~~~--A~~~~~~m~~~-g--~~p~~~t~~~l-i~~~~~~g~--~~~A~~~~~~m~-----~~g~-~p~~~~~~~l 515 (877)
......++ +.++++.+... . ...+..++..+ +.++..... ..++...+.+.. ..+. ..-..+++.|
T Consensus 462 ~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm 541 (608)
T PF10345_consen 462 ESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLM 541 (608)
T ss_pred hcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 22222333 67777766542 1 11233344444 444432221 224443333222 2111 1112233333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC-CCCCC--HHHHHH-----HHHHHhhcCChhhhHHHH
Q 002814 516 IDALCKNGLVESAVSLLDEMTKE-GIRPN--VVTYNS-----IIDAFGRSATTECTVDDV 567 (877)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~~~~~~-----li~~~~~~g~~~~a~~~~ 567 (877)
...+. .|+..+..+........ .-.|| ...|.. +.+.+...|+.++|....
T Consensus 542 ~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~ 600 (608)
T PF10345_consen 542 GHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEAR 600 (608)
T ss_pred HHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 33333 68877765554443321 11122 335643 333467778888876543
No 330
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=83.03 E-value=45 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=10.9
Q ss_pred ccCCHHHHHHHHHHHHH
Q 002814 168 NRGEWSKAIQCFAFAVK 184 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~ 184 (877)
..|++..|++.+-.++.
T Consensus 385 SaGDy~~AiETllTAI~ 401 (498)
T KOG4849|consen 385 SAGDYKGAIETLLTAIQ 401 (498)
T ss_pred ccccchhHHHHHHHHHH
Confidence 45777777776655543
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.82 E-value=2.1 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
..++.|+.+|...|++++|..++.++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999988764
No 332
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=58 Score=32.92 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 002814 408 NTVLSIYAKLGRFEEALLVCK 428 (877)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~ 428 (877)
.-++..+.+.|.+.+|+.+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHH
Confidence 345666677777777766543
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.12 E-value=2.2 Score=27.40 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLFDN 676 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (877)
+|..+...|...|++++|.+.|++..+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466777888888888888888888876655
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.67 E-value=80 Score=33.87 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
..+..+.| +++...++....... .++...|..+... +.++++++...++.+...
T Consensus 5 ~eaaWrl~-~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 5 AEAAWRLG-DWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHhcC-ChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 45566677 777744444433321 2344455544443 778888888777776653
No 335
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=81.34 E-value=68 Score=32.85 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVR 459 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~ 459 (877)
..+|.-|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456777888888888776543
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.44 E-value=3.2 Score=26.64 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.+|..++.+|...|++++|...+.++.+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36888999999999999999999988754
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.44 E-value=7.5 Score=39.94 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=60.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-.+.|.++|.|++|+.+|...+... +.++.++..-..+|.+..+|..|..=...++..+-. -+.+|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 4566889999999999999988875 345567778888899999999888777777654211 123333333333344
Q ss_pred CCHHHHHHHHHHHHh
Q 002814 242 GYCQEAISVFNSMKR 256 (877)
Q Consensus 242 g~~~~A~~~~~~m~~ 256 (877)
|...+|.+-++..++
T Consensus 179 g~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLA 193 (536)
T ss_pred hhHHHHHHhHHHHHh
Confidence 455555555555444
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.31 E-value=50 Score=30.10 Aligned_cols=52 Identities=12% Similarity=0.009 Sum_probs=33.0
Q ss_pred hcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002814 205 RLGKVDLAKNIFETALNEGYG-NTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 258 (877)
..++++++..+++.+.-..+. +...++. ...+...|++++|+.+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 367778888888777654322 1222333 334667788888888888887643
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.00 E-value=27 Score=39.04 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=91.5
Q ss_pred HcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
-.|+++.|..++..+.+ ...+.++..+-+.|..++|+++- +|..-- .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 45667777665555442 23345556666677777776542 222211 122346678887777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002814 426 VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (877)
Q Consensus 426 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 505 (877)
+..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 65543 2566788888888888888888888776543 34566666667776666666666666663
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002814 506 KADVVLYSALIDALCKNGLVESAVSLLDEM 535 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (877)
.|.... +|...|+++++.+++.+-
T Consensus 724 -~N~AF~-----~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 -NNLAFL-----AYFLSGDYEECLELLIST 747 (794)
T ss_pred -cchHHH-----HHHHcCCHHHHHHHHHhc
Confidence 233222 455678888877776654
No 340
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.91 E-value=1e+02 Score=32.96 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
...+|..++..+.+.|+++.|...+..+...+... +......-+..+...|+.++|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777888888888888777776643111 233444445566677788888887777766
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.75 E-value=1.5e+02 Score=34.79 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHc-cccCCChHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHH
Q 002814 174 KAIQCFAFAVKR-EERKNDQGKLASAMISILG-RLGKVDLAKNIFETALNEGYGNTV-----YAFSALISAYGRSGYCQE 246 (877)
Q Consensus 174 ~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~ 246 (877)
.|+++++-+.+. ...+.....++-.++..|. ...+++.|+..+++....--.++. .....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 467777766642 2222224456666777666 678899999999988654322221 23345677777777666
Q ss_pred HHHHHHHHHhCC----CCCCHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hCCCHH
Q 002814 247 AISVFNSMKRYN----LKPNLVTYNAV-IDACGKGGVDFKHVVEIFDDMLRNG---VQPDRITFNSLLAVCS--RGGLWE 316 (877)
Q Consensus 247 A~~~~~~m~~~g----~~p~~~~~~~l-l~~~~~~g~~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~g~~~ 316 (877)
|...+++..+.- ..+-...|..+ +..+...+ ++..|.+.++.+...- ..+-..++..++.+.. +.+..+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888866421 11112233333 22233346 8888888888876532 2333444444444433 345566
Q ss_pred HHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHch
Q 002814 317 AARNLFNEMVHRGI---------DQDIFTYNTLLDAIC--KGAQMDLAFEIMAEMP 361 (877)
Q Consensus 317 ~A~~~~~~m~~~g~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 361 (877)
++.+..+++..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666633211 234566776766654 5666666666655543
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.51 E-value=3.6 Score=27.83 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRL 673 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (877)
.+++.|..+|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688899999999999999999988764
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.43 E-value=23 Score=32.17 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=45.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcchhHHH-HHhhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCc
Q 002814 657 RCNSFEDASMLLEELRLFDNQVYGVAH-GLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (877)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (877)
..++.+++..+++.|+...|+...+-. ........|+|.+|..+|+++.+..+ ..+..---++.++.-+|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~-~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG-APPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC-CchHHHHHHHHHHHhcCC
Confidence 478899999999999887777555411 11111267899999999998876654 222222334445555554
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.33 E-value=1.5e+02 Score=34.67 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+|--|.++|++++|.++..+..+. .......+-..+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 444566777777777777443322 222334555555666543
No 345
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.73 E-value=75 Score=34.80 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQ-------AGLKAD-----------VVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
||.|...+.+.|.+..+..+|.+..+ .|++|. ..+||+=+ .|...|+.-.|.+.|.+..+.
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH
Confidence 35555555555555555555555442 343332 23455433 567788888888888888764
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 002814 539 GIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 539 g~~p~~~~~~~li~~~~~ 556 (877)
+.-+...|-.|..+|..
T Consensus 365 -fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 -FHRNPRLWLRLAECCIM 381 (696)
T ss_pred -HhcCcHHHHHHHHHHHH
Confidence 55677888888888843
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.17 E-value=80 Score=30.28 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=48.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 002814 307 AVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 384 (877)
..+...|++++|+..++..+..--..+ ..+--.|.......|.+|+|+.+++.....+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 445666777777776666554311001 11222344555666777777777766655422 11222334455666666
Q ss_pred HHHHHHHHHHHHHC
Q 002814 385 LDDALNMFSEMKFL 398 (877)
Q Consensus 385 ~~~A~~~~~~m~~~ 398 (877)
-++|..-|++..+.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666666655
No 347
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.02 E-value=1.1e+02 Score=31.82 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=87.3
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISIL----GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR--- 240 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 240 (877)
..+.+..|...+..+...+. ......+...| +...+...|.+.|..+.+.| .......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~-----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD-----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC-----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCC
Confidence 45667777777776665321 12223333333 33446778888888777665 33455556666654
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----CCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 002814 241 -SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG----GVDF--KHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-- 311 (877)
Q Consensus 241 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~--~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 311 (877)
..+..+|..+|++..+.|..+-..+...+...+... +... ..|...|.++...+ +......|...|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGL 201 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCC
Confidence 347788888888888876543222233333333332 1122 36777777777765 34444445444433
Q ss_pred --CCCHHHHHHHHHHHHHcC
Q 002814 312 --GGLWEAARNLFNEMVHRG 329 (877)
Q Consensus 312 --~g~~~~A~~~~~~m~~~g 329 (877)
..+.++|...|....+.|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 336777888887777776
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.63 E-value=1.4e+02 Score=32.99 Aligned_cols=95 Identities=11% Similarity=0.185 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA 307 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 307 (877)
-...-+++..+..+...+-...+..+|...| -+-..|-.++.+|...+ -++-..+++++.+..+. |++.-..|..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~--n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG--NEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC--chhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 3344556666766666666666777776644 35566667777776665 35666677766665443 4444444444
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 002814 308 VCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~ 328 (877)
.|-+ ++.+.+...|.++..+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 4444 6666666666666554
No 349
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.09 E-value=24 Score=29.29 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 489 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
+.-++.+-++.+....+.|+.....+-+.+|-+.+++.-|+++|+-.+.+ +..+..+|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 34455566666666677788888888888888888888888888877643 22244466665543
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.05 E-value=86 Score=34.15 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=75.0
Q ss_pred cCCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 275 KGGVDFKHVV-EIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (877)
Q Consensus 275 ~~g~~~~~a~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 353 (877)
..| +...|- +++..+....-.|+.+.. ....+...|+++.+.+.+....+. +.....+...++....+.|++++|
T Consensus 301 ~~g-d~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADG-DIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hcc-CHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 345 555553 444444443333444333 234466778888888877665543 233456777788888888888888
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (877)
Q Consensus 354 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 399 (877)
..+-+.|....++ |....+.-....-..|-+|++.-.++++....
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888776555 44444443344455677888888888876553
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.21 E-value=5.1 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCchhhHHHHHH
Q 002814 715 FYNALTDMLWHFGQKRGAQLVVL 737 (877)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~ 737 (877)
....|+++++..|+.++|..++.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999998764
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.06 E-value=31 Score=33.24 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=42.0
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC---CCCCCHHHHHHHHHHHHHcCCHH
Q 002814 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK---NISPNVVTYSTMIDGYAKAGRLD 386 (877)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~li~~~~~~g~~~ 386 (877)
.+.|+ +.|.+.|-++...+.--++.....|...|. ..+.+++++++.+..+. +-.+|...+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 456666666655554445555555554444 45566666666555432 22445666666666666666666
Q ss_pred HH
Q 002814 387 DA 388 (877)
Q Consensus 387 ~A 388 (877)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 55
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.93 E-value=26 Score=33.76 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhhcCChhhh
Q 002814 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE---GIRPNVVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 491 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a 563 (877)
++|.+.|-.+...+.--++.....|...|. ..+.++|+.++.+..+. +-.+|...+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554443333334334333333 44556666665555532 2245566666666666666666554
No 354
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.81 E-value=2e+02 Score=33.46 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=76.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCC
Q 002814 380 AKAGRLDDALNMFSEMKFLGIGLDRVSY----NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYN-ALLGGYGKQGK 454 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~ 454 (877)
...|+..+|.+++.-..-.. .+....| ..+.-++...|..+...+.+...++.. ..++..|- .|.-++...|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~-~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~-~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKE-AGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTA-ENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCcc-CCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhc-cchhhhhhhhhhccchhccc
Confidence 44677777887777554221 0111122 111223334444445666666555443 22333332 33333433333
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHH-HHHHHHHHHcCChHHHH
Q 002814 455 YDEVRRMFEQMKADCVSPNLLTYS--TLIDVYSKGGLYKEAMQIFREFKQAGL--KADVVLY-SALIDALCKNGLVESAV 529 (877)
Q Consensus 455 ~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~-~~li~~~~~~g~~~~A~ 529 (877)
.-.++|+.+++.-...+..+-. .+..+++..|... .+.+++|...-. +-+-+.- -.+.-++.--|+-++|.
T Consensus 446 --a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 446 --ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred --ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhH
Confidence 2345566555432222332222 2222333333221 123333332110 1111111 12233566678888999
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHhhcCChh
Q 002814 530 SLLDEMTKEGIRPNVV--TYNSIIDAFGRSATTE 561 (877)
Q Consensus 530 ~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~ 561 (877)
.+.++|.... .|-.. -.-++.-+|+-.|+..
T Consensus 522 ~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnk 554 (929)
T KOG2062|consen 522 PLIKELLRDK-DPILRYGGMYTLALAYVGTGNNK 554 (929)
T ss_pred HHHHHHhcCC-chhhhhhhHHHHHHHHhccCchh
Confidence 9999998642 22211 1224555666666654
No 355
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.62 E-value=1.1e+02 Score=33.48 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHcCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCC----
Q 002814 413 IYAKLGRFEEALLVCKEME---SSGIRKD-----AVTYNALLGGYGKQGKYDEVRRMFEQMKA-------DCVSPN---- 473 (877)
Q Consensus 413 ~~~~~g~~~~A~~~~~~m~---~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~---- 473 (877)
.+.-.|++.+|.+++...- ..|...+ -..||.|...+.+.|.+..+..+|.+.++ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4556788888888765431 1221222 22346666666677777777777766653 444432
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 474 -------LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 474 -------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
..+||. .-.|...|+.-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 234553 33466789999999999888764 35688899999988864
No 356
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.23 E-value=1.3e+02 Score=31.15 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 002814 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG-------KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----G 487 (877)
Q Consensus 419 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~ 487 (877)
+..+|...|++..+.|..+...+...+...|..-. +...|...|.++-..+ +......|...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 45555555555555542221222333333333221 2235666666666654 44444445555543 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 488 GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG---------------LVESAVSLLDEMTKEGIRPNVVTYN 548 (877)
Q Consensus 488 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~~~~ 548 (877)
.+.++|...|+...+.|. ......+. .+...| +...|...+......|.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 367777777777777663 22222222 444444 5666777777776666554444444
No 357
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.07 E-value=2.7e+02 Score=34.09 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (877)
+|+++.+..+.|.+.-...-|..+.+.+++++|..+...|.
T Consensus 984 L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 984 LFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 44444444455555555555566667777777777777665
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.04 E-value=11 Score=29.92 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHH
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNI 215 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (877)
..++-++|+..+..+++....+++-..++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777766555555555666666777777766665544
No 359
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.79 E-value=1.4e+02 Score=34.66 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 625 EILCILGVFQKMHKLKIKPNVVTFSAILN 653 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~ 653 (877)
+..+|.+++-.+...++-|...-..-|.+
T Consensus 510 ~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 510 DFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -----------------------------
T ss_pred hHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 55667777777777677776665444443
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=69.06 E-value=1.4e+02 Score=30.61 Aligned_cols=118 Identities=9% Similarity=0.177 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHH
Q 002814 241 SGYCQEAISVFNSMKR-YNLKPNLVTYNAVIDACGK-GGVDFKHVVEIFDDMLR-NGVQPDRITFNSLLAVCSRGGLWEA 317 (877)
Q Consensus 241 ~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g~~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~ 317 (877)
+..+.+|+.+|+.... ..+--|..+...+++.... .+.....-.++.+-+.. .|-.++..+...++..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445566666663221 1223355555555555544 22112222222222221 1234455555566666666666666
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 318 ARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 318 A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
-.++++..... +..-|...|..+|+.....|+..-...+.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66666555444 344455666666666666666555555544
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.74 E-value=37 Score=34.34 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=60.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR- 240 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~- 240 (877)
=|++++..++|++++...-.-.+.....| +++...-|-.|.|.+++..+.++-..=+..--..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 47899999999887764433322222222 457777788899999999888887776654333344457777766654
Q ss_pred ----cCCHHHHHHHH
Q 002814 241 ----SGYCQEAISVF 251 (877)
Q Consensus 241 ----~g~~~~A~~~~ 251 (877)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888888887
No 362
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.72 E-value=22 Score=29.86 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
+..+-++.+....+.|+.....+.+.+|-+.+++.-|+++|+-.+.+ +.+...+|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45555666666677788888888888888888888888888877643 22222266665543
No 363
>PRK04946 hypothetical protein; Provisional
Probab=68.28 E-value=13 Score=35.30 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=42.8
Q ss_pred ccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCC
Q 002814 752 SCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMG 819 (877)
Q Consensus 752 ~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~ 819 (877)
..+|||+++.-.|..+|..|+.+-+.. --.++.|+.|.|. ..+++.|...|....
T Consensus 96 ~~LDLhG~~~eeA~~~L~~fl~~a~~~------g~r~v~IIHGkG~-------gvLk~~V~~wL~q~~ 150 (181)
T PRK04946 96 LFLDLHGLTQLQAKQELGALIAACRKE------HVFCACVMHGHGK-------HILKQQTPLWLAQHP 150 (181)
T ss_pred eEEECCCCCHHHHHHHHHHHHHHHHHc------CCCEEEEEcCCCH-------hHHHHHHHHHHcCCc
Confidence 369999999999999999998765422 2346789999885 367888888887643
No 364
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.38 E-value=14 Score=35.06 Aligned_cols=58 Identities=29% Similarity=0.387 Sum_probs=41.9
Q ss_pred cccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccC-chhhHHHHHHHHhc
Q 002814 751 ESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVG-DGALRRAVEVLLTG 817 (877)
Q Consensus 751 ~~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~-~~~~~~~i~~~l~~ 817 (877)
+..+|||+|..-.|..+|..++..-++. --.++.|++|.|. |. | +..+++.|-.-|..
T Consensus 96 e~~LDLHG~tq~eAr~~L~~Fi~~a~~~------~~rcv~VihGkG~-s~--g~~~vLK~~Vp~WL~q 154 (184)
T COG2840 96 EARLDLHGLTQEEARQELGAFIARARAE------GLRCVLVIHGKGR-SK--GSKPVLKSQVPRWLTQ 154 (184)
T ss_pred ceeeeccCCCHHHHHHHHHHHHHHHHHh------CCcEEEEEeCCCc-CC--CCchhHHHHHHHHHHh
Confidence 3469999999999999999998664432 4567899999997 42 4 34456555555544
No 365
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.35 E-value=1.1e+02 Score=35.43 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=0.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (877)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 554 (877)
+.|++.+|.+.+-.+.+.++.|...-...|.++.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ----------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 4577888888888887777777776666666543
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.98 E-value=1.5e+02 Score=30.22 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (877)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 516 (877)
-|+.....+...|.+.|++.+|...|-.-. .++...+..++.-....|...++ |...-. .+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HH
Confidence 366777788888888888888887764321 12233332233333333332222 111111 22
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 002814 517 DALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~ 537 (877)
--|...|+...|...++...+
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 235667777888777776654
No 367
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=66.68 E-value=45 Score=27.78 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=20.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 423 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
..+-+..+...++.|++.+..+-+.+|-+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444444444455555555555555555554443
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.67 E-value=25 Score=34.04 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=35.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISA 237 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~ 237 (877)
+..+.+.+++++|+.....-++.+ |.+...-..++..|+-.|+++.|..-++..-.... .+....|..+|++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455555556655555444443 23333445555566666666666555544433221 1224455555544
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.35 E-value=2.9e+02 Score=33.10 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHchhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 347 GAQMDLAFEIMAEMPAK----NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 347 ~g~~~~A~~~~~~m~~~----g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
.|++++|.++.+...+. -.....+.+.++..+..-.|++++|..+..+..
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 45555555554443322 122344445555555555666666665555444
No 370
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.24 E-value=58 Score=33.26 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhH------------------HH
Q 002814 657 RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAF------------------YN 717 (877)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~------------------~~ 717 (877)
+.|+.|+|..+|+.+.+.+|.+..++..+..-. ..++.-+|-.++-+++...| .|... +.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP-~nseALvnR~RT~plV~~iD~r~l~ 206 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP-GNSEALVNRARTTPLVSAIDRRMLR 206 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC-CchHHHhhhhccchHHHHHHHHHHH
Q ss_pred HHHHHHHhcCchhhHHHHHHHhhhhhchhhhhccccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEee--c
Q 002814 718 ALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTG--W 795 (877)
Q Consensus 718 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g--~ 795 (877)
.+-+---+.....+.-..+..+++..-+.-.+-.-.+....+|+| ++|.+++.+...||.+--+-+ .
T Consensus 207 svdskrd~~~~i~~sN~ALRR~m~EtYf~hiYHtvaiegntlsl~-----------~~R~ILEtrmavpGKSi~EhNEvi 275 (472)
T KOG3824|consen 207 SVDSKRDEFNHIQHSNTALRRMMRETYFLHIYHTVAIEGNTLSLG-----------QTRAILETRMAVPGKSIREHNEVI 275 (472)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHhheeeeecccccchH-----------HHHHHHhhcccCCCcChHHhhhhh
Q ss_pred ccc---ccc-------cCchhhHHHHHHHHhcCCCCcccccCCCceEEech------------------HHHHHHhhccC
Q 002814 796 GKH---SKV-------VGDGALRRAVEVLLTGMGAPFWVANCNLGRFISTG------------------PMVASWLRESG 847 (877)
Q Consensus 796 g~h---~~~-------~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~~~~~~------------------~~~~~wl~~~~ 847 (877)
|-| .|. .+|-++....+-+=+-|+. +++--.|+|..+. ..+..||-+..
T Consensus 276 GMdaAmkyiN~sLvski~~itI~DiLE~HRRVLG~---vDPvEaGrfRttQVyVG~hiPp~P~dv~~qmq~fv~WLNsE~ 352 (472)
T KOG3824|consen 276 GMDAAMKYINCSLVSKIHDITIDDILEMHRRVLGN---VDPVEAGRFRTTQVYVGRHIPPSPEDVMEQMQDFVDWLNSES 352 (472)
T ss_pred hHHHHHHHhhhHhhhhccceeHHHHHHHHHHHhcC---CCcccccceeeeeEEecCCCCCChHHHHHHHHHHHHHhcccc
Q ss_pred cceE
Q 002814 848 TLKV 851 (877)
Q Consensus 848 ~~~~ 851 (877)
+..+
T Consensus 353 ~~tl 356 (472)
T KOG3824|consen 353 TLTL 356 (472)
T ss_pred cccc
No 371
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.35 E-value=1.9e+02 Score=30.67 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR---SGYCQEAI 248 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~ 248 (877)
.+.-+.+++++++.+ +.+..+...++..+.+..+.+...+.+++++..... +...|...++.... .-.+.+..
T Consensus 47 ~E~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHH
Confidence 345677788888774 456677777888888888888888888888776432 66777777765443 22345555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
.+|.+.... +-...............+-..| ...+..+...+..+|..+.|..+++.+++.
T Consensus 123 ~~y~~~l~~-----------L~~~~~~~~~~~~~~~~~e~~~--------l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 123 DVYEKCLRA-----------LSRRRSGRMTSHPDLPELEEFM--------LYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHH-----------HHHhhccccccccchhhHHHHH--------HHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 555554431 0000000000000011111111 123334445566778888888888888776
Q ss_pred CC
Q 002814 329 GI 330 (877)
Q Consensus 329 g~ 330 (877)
.+
T Consensus 184 n~ 185 (321)
T PF08424_consen 184 NF 185 (321)
T ss_pred Hc
Confidence 54
No 372
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.25 E-value=72 Score=26.92 Aligned_cols=45 Identities=27% Similarity=0.433 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 291 (877)
+..+-++.+....+.|+.....+.+++|.+.+ ++..|+++|+-..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvN-D~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVN-DFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 34444444444455555555555555555555 5555555555544
No 373
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=62.99 E-value=1.9e+02 Score=29.82 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhcCChhhh
Q 002814 546 TYNSIIDAFGRSATTECT 563 (877)
Q Consensus 546 ~~~~li~~~~~~g~~~~a 563 (877)
+|.-|+.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666655543
No 374
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.73 E-value=10 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=14.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 002814 514 ALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344455556666666666666654
No 375
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=62.49 E-value=1.6 Score=39.98 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=17.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 357 (877)
+.+..+....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33333344444444443332233334444444444443333333333
No 376
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.33 E-value=11 Score=23.76 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=12.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcC
Q 002814 651 ILNACSRCNSFEDASMLLEELRLFD 675 (877)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (877)
+..++.+.|+.++|.+.|++++...
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3444445555555555555555433
No 377
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=62.08 E-value=1.9 Score=39.51 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=20.9
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
+.+.+..+....+++.+...+..-+....+.++..|++.++.++..++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444433333334444444444444444444444443
No 378
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.65 E-value=51 Score=32.10 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE--GIRPNVVTYNSIIDA 553 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~ 553 (877)
.+.-++.+.+.+.+.+|+...++-++.. +.|...-..++..||-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556666777777777777766654 235566667777788888888887766665542 122334456666554
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=1.3e+02 Score=29.81 Aligned_cols=83 Identities=18% Similarity=0.062 Sum_probs=51.9
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 245 (877)
....++..|+..|.+++..+ |.....|..-+.++.+..+++.+..=-.+++.. .|| +....-+...+.....++
T Consensus 21 f~~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cchhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33456777777777777765 333456666677777777777776666666553 333 334444555556666777
Q ss_pred HHHHHHHHH
Q 002814 246 EAISVFNSM 254 (877)
Q Consensus 246 ~A~~~~~~m 254 (877)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 777777665
No 380
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.66 E-value=22 Score=38.80 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=62.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccc
Q 002814 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI-IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRT 597 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (877)
+.+.+.++.|+.++.++++ +.||...|-+. ..++.+.+++..|+....++++..|... +|..
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~---------------K~Y~ 76 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI---------------KAYV 76 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh---------------heee
Confidence 4456667777777777776 45665544333 3667777777777777777777665431 1111
Q ss_pred hhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 002814 598 DNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCN 659 (877)
Q Consensus 598 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g 659 (877)
.+....+ ..+++.+|+..|+.... +.||..-+.-.+.-|..+.
T Consensus 77 rrg~a~m-----------------~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 77 RRGTAVM-----------------ALGEFKKALLDLEKVKK--LAPNDPDATRKIDECNKIV 119 (476)
T ss_pred eccHHHH-----------------hHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHH
Confidence 1111000 01256677777777765 7788777777777666543
No 381
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.54 E-value=2.6e+02 Score=30.67 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
.++...-|..-...|+...|-+-...+++.....|+ ............|+++.+.+.+..+.+. +.....+...++
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~ 364 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRL 364 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHH
Confidence 344444444445678887766555555555433333 3333344567889999999888766543 223456788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ 296 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~ 296 (877)
+...+.|++++|..+-+-|....+. +...........-..| -++++...++++...+.+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~-~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQ-LFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHh-HHHHHHHHHHHHhccCCh
Confidence 9999999999999999988876554 3333222222233445 688899899888765443
No 382
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.25 E-value=1.4e+02 Score=29.65 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=33.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 519 LCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
|....+++.|+..|.+.+. +.|+.. -|+.-+-++.+..+++.+.+...+++++.++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 3444556666666655554 456664 3445555666677777777766676666554
No 383
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.94 E-value=22 Score=38.76 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=58.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 242 (877)
++.+...+.++.|+.++..++... +..+..+..-..++.+.+++..|..=+.++++..+. -...|---..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 444555667777777777777775 233344444456677777777777777777665321 1222322333344445
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
.+.+|+..|+.... +.|+..-...++.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 55555555555554 345555555544444
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.73 E-value=91 Score=25.78 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChH
Q 002814 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVD 210 (877)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (877)
..+...+...+.+.+.-..+...+...|++++|++.+-.+++...... +...-..|+.++.-.|.-+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-DDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-CCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHcCCCC
Confidence 334444444555555556677778888888888888888877754332 2334455666655555543
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.98 E-value=13 Score=22.36 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 714 AFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
.+|..++.++...|++++|...+.++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3577889999999999999998877654
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.44 E-value=22 Score=24.81 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=11.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 002814 515 LIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 387
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.38 E-value=1.8e+02 Score=32.14 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 002814 629 ILGVFQKMHK 638 (877)
Q Consensus 629 A~~~~~~m~~ 638 (877)
..+-++.|..
T Consensus 299 C~~ei~~mk~ 308 (413)
T PHA02875 299 CIIELRRIKS 308 (413)
T ss_pred HHHHHHHHHh
Confidence 3445566665
No 388
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.62 E-value=18 Score=21.73 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDN 676 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (877)
|..+...+...|++++|...|+...+.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44555666666677777766666654433
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.51 E-value=93 Score=30.69 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHccCCHHHHHHHHHHHHHccc----cCCChHHHHHHHHHHHHhcCChH-------HHHHHHHHHHHcCCCC-----CHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREE----RKNDQGKLASAMISILGRLGKVD-------LAKNIFETALNEGYGN-----TVY 229 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~g~~~-----~~~ 229 (877)
+.....+++|++.|..++.... .+..-+.++..+.-.|...|+-+ .|.+.|.++......| ...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 4556677788887776654321 11222445566666777777733 3555555554332111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
+.-.+.....+.|+.++|.+.|.++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3333445556677777777777777654
No 390
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.48 E-value=4e+02 Score=31.48 Aligned_cols=377 Identities=10% Similarity=0.016 Sum_probs=203.9
Q ss_pred HHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 002814 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL--AKNIFETA 219 (877)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 219 (877)
-..++......+.+.+.-+..+.++...|+-++|......+-..+... ...+..++..+.+.|.+.. .++=++.+
T Consensus 115 w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~---p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 115 WRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL---PNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---ChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344555332334455556778888889999888877777666565332 3477888888887776543 33334444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCCCHHHHH---HHHHHHHcCCCCHHHHHHHH
Q 002814 220 LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR---------YNLKPNLVTYN---AVIDACGKGGVDFKHVVEIF 287 (877)
Q Consensus 220 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~p~~~~~~---~ll~~~~~~g~~~~~a~~~~ 287 (877)
...| +...-..|+..+. .......+.+..+.. ..+.++...-. ..+.-+.+. +.+.|..++
T Consensus 192 l~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~--d~~~A~~~~ 264 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQ--DAENARLMI 264 (644)
T ss_pred HHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHh--CHHHHHHHH
Confidence 4332 2222222322221 000100011111100 01112321111 222223333 578999999
Q ss_pred HHHHHC-CCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 288 DDMLRN-GVQPDR--ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 288 ~~m~~~-g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
...... ++.++. .++..+.......+...++...++...... .|......-+....+.++++.+...+..|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 887543 232222 233344333333332567777777655432 244445555666668999999999999987642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHHH
Q 002814 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA-LLVCKEMESSGIRKDAVTYN 443 (877)
Q Consensus 365 ~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~ 443 (877)
- -...-.--+..++...|+.++|...|+.+... . +|-.++.+ .+.|..-.- ...... ....+..+.. .
T Consensus 343 ~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~~~~--~ 411 (644)
T PRK11619 343 K-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQGPE--M 411 (644)
T ss_pred c-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCCCCCCCCCc-hhhhhccChH--H
Confidence 2 23444555677777899999999999997432 2 23333221 122321000 000000 0000011111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----GLKADVVLYSALIDA 518 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~ 518 (877)
.-+..+...|+..+|...+..+... .+......+...-.+.|..+.++......... .+ | ..|...+..
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p--~~~~~~~~~ 485 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-P--LAWNDEFRR 485 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-C--cchHHHHHH
Confidence 2345567789999999999988875 24555566666666788888887766543221 11 1 247778888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 002814 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTY 547 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (877)
+.+.-.++.++-.---..++++.|+...-
T Consensus 486 ~a~~~~v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 486 YTSGKGIPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred HHHHcCCCHHHHHHHHHHhcCCCCCCccC
Confidence 88777788776433333477888887643
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.96 E-value=2.1e+02 Score=33.24 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 422 EALLVCKEMESSGIRKDA---VTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 422 ~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
+-...+.+|...--.|++ .+...++-.|-...+++...++.+.+..
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 334445555543223332 2333444455555566666666666554
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.11 E-value=1.3e+02 Score=25.39 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=6.7
Q ss_pred HHHcCCHHHHHHHHH
Q 002814 449 YGKQGKYDEVRRMFE 463 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~ 463 (877)
+...|++++|..+.+
T Consensus 49 LmNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 49 LMNRGDYQSALQLGN 63 (115)
T ss_pred HHccchHHHHHHhcC
Confidence 344444444444443
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.02 E-value=89 Score=27.78 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002814 211 LAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNS 253 (877)
Q Consensus 211 ~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (877)
.+.++|..|...|+... ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776655433 55666667777777777777777764
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.81 E-value=22 Score=24.77 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002814 304 SLLAVCSRGGLWEAARNLFNEMVHRG 329 (877)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~m~~~g 329 (877)
.|..+|...|+.+.|+.++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677778888888888888777643
No 395
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.70 E-value=15 Score=38.03 Aligned_cols=86 Identities=9% Similarity=-0.080 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHH
Q 002814 658 CNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVV 736 (877)
Q Consensus 658 ~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 736 (877)
.|.+++|++.|...++++|....+-..-...+ ..+.+..|+.-.+.++++++. ...-|---+.+-.-+|+|++|...+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHH
Confidence 46677777777777766665332211111111 344566666666666666663 2333333344445567777777776
Q ss_pred HHhhhhhc
Q 002814 737 LEGKRRQV 744 (877)
Q Consensus 737 ~~~~~~~~ 744 (877)
..+..++.
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 66655543
No 396
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.42 E-value=1.7e+02 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=9.9
Q ss_pred ccchHHHHHHHHHHHhhcCC
Q 002814 690 RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~ 709 (877)
+.++++++..+.+.+++.+|
T Consensus 83 RlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 83 RLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHhhHHHHHHHHHHHHhhCC
Confidence 44455555555554444444
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.25 E-value=1.2e+02 Score=25.08 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.-.++.+....|++++|...+.+++...
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4446777889999999999999887543
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.85 E-value=28 Score=25.46 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=23.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCcchhH
Q 002814 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (877)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (877)
+.-++.+.|++++|+++.+.+++.+|++..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4557788899999999999988888876543
No 399
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.44 E-value=2.6e+02 Score=29.34 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc------CCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHH
Q 002814 624 QEILCILGVFQKMHKLKIKPNVVTFSAILNACSR------CNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQA 697 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~------~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A 697 (877)
+-+++++.++++....+. |..+...+.|.+|.. .-+|..-..+|+-+....|.....+|.....-.-.-.+.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhH
Confidence 357788889999888765 888888888888763 3467778888888876666555444443211111123445
Q ss_pred HHHHHHHhhcC-CCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 698 LSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 698 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
..+++-+.... -+....++..-+++|.++|+.++|..-|+.+...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 55665554331 1123445667899999999999999999887654
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.36 E-value=1.9e+02 Score=26.35 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQA------GLKADVVLYSALIDALCKNGL-VESAVSLLDEMTKEGIRPNVVTYNSI 550 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (877)
|.++.-....++..-.+.+++.+... | ..+...|.+++.+..+..- .--+..+|+-|.+.+.+.+..-|..+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIG-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhh-hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44444444444444444444443211 1 2356678888888766555 44567788888887788888889999
Q ss_pred HHHHhhc
Q 002814 551 IDAFGRS 557 (877)
Q Consensus 551 i~~~~~~ 557 (877)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9888665
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.22 E-value=85 Score=35.20 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=25.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
.|.+.+.+.|...+|-.++.+.+.... ....++..+.++|....+++.|++.|.+..+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 344444444444444444444444321 1333444444444444444445444444443
No 402
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=50.77 E-value=1.5e+02 Score=24.97 Aligned_cols=50 Identities=8% Similarity=0.174 Sum_probs=23.5
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (877)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 399 (877)
+...|+|++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34455555555555444 2355555544432 23444444444444444444
No 403
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.34 E-value=3e+02 Score=28.21 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcC--------CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 316 EAARNLFNEMVHRG--------IDQDIFTYNTLLDAI-CKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD 386 (877)
Q Consensus 316 ~~A~~~~~~m~~~g--------~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 386 (877)
+....+|..+.+.| +..|..-+|+|+.-- .+...++++++-.++-- |-.--...+..+...|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHH
Q 002814 387 DALNMFSEMKFL----GIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG--YGKQGKYDEVR 459 (877)
Q Consensus 387 ~A~~~~~~m~~~----g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~ 459 (877)
.+.+++.+..+. |.+.|. .+-.-|.-.|....-+++-++..+.|.+.|...+..--...-.+ +....++.+|-
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002814 460 RMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (877)
Q Consensus 460 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g 488 (877)
.+|.+....--......|...+.--.-.|
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHhh
No 404
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.30 E-value=2.7e+02 Score=30.73 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=21.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFT--YNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 358 (877)
..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 108 ~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 108 LATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 334455543 3444455554443221 1233445556666655444443
No 405
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.94 E-value=8.3e+02 Score=33.21 Aligned_cols=148 Identities=10% Similarity=0.052 Sum_probs=67.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 375 MIDGYAKAGRLDDALNMFSEM----KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 450 (877)
+..+-.+++.+..|+-.++.- ++. .....-|..+...|+..++.|....+...-.. .++ .+ ..|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHH
Confidence 333444555666666666552 111 11222334444466666666665555543111 111 12 2233345
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChHHHH
Q 002814 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL-IDALCKNGLVESAV 529 (877)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~ 529 (877)
..|++..|...|+++.+.+ ++...+++.++......|.++..+-..+-..... ......|+.+ +.+-.+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 5666666666666666542 2224555555555555555555555444433321 1222223222 23335555555544
Q ss_pred HHH
Q 002814 530 SLL 532 (877)
Q Consensus 530 ~~~ 532 (877)
..+
T Consensus 1539 ~~l 1541 (2382)
T KOG0890|consen 1539 SYL 1541 (2382)
T ss_pred hhh
Confidence 443
No 406
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.83 E-value=5.6e+02 Score=30.88 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=40.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 002814 240 RSGYCQEAISVFNSMKRYNLKPN-------LVTYNAVIDACG-KGGVDFKHVVEIFDDMLRN----GVQPDRITFNSLLA 307 (877)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~-~~g~~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~ 307 (877)
...++++|..++.++...-..|+ ...|+.+-.... ..| ++++|.++.+..... -..+....+.++..
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44566666666665543211111 112333322221 223 556666655555432 12223344455555
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVH 327 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~ 327 (877)
+..-.|++++|..+..+..+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 55556666666665555443
No 407
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.33 E-value=4.2e+02 Score=29.02 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (877)
..|+.-|...|.+.+|....+++--- +-...+.+.+++.+..+.|+-...+.++++.-+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34555566666666666665554211 01133455666666666666555555555555443
No 408
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=47.00 E-value=1e+02 Score=34.18 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=5.8
Q ss_pred ChhhHHHHHHHH
Q 002814 155 GADDYTFLLREL 166 (877)
Q Consensus 155 ~~~~~~~ll~~~ 166 (877)
+++.-+.+++++
T Consensus 302 tpd~RcRvvNAL 313 (582)
T PF03276_consen 302 TPDLRCRVVNAL 313 (582)
T ss_pred CccHHHHHHHHH
Confidence 344444555544
No 409
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.87 E-value=3.2e+02 Score=27.59 Aligned_cols=193 Identities=16% Similarity=0.184 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHHcCC
Q 002814 383 GRLDDALNMFSEMKFLGIGLDR---VSYNTVLSIYAKLGRFEEALLVCKEMES---SGI--RKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~~~~~~~~~li~~~~~~g~ 454 (877)
...++|+.-|.+..+..-.-.. .....+|..+.+.|++++..+.|.++.. ..+ .-+..+.|++++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4566777777776654222222 2334557778899999999888887742 111 1245677888888777777
Q ss_pred HHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CC-------CHHHHHHHHHH
Q 002814 455 YDEVRRMFEQMKAD-----CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL----KA-------DVVLYSALIDA 518 (877)
Q Consensus 455 ~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p-------~~~~~~~li~~ 518 (877)
.+....+|+.-++. +-..-..|-..|...|...|.+.+..++++++.+.-- .- =...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 77666666543321 1111123345677788888888888888888764310 11 13467777788
Q ss_pred HHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----hhcCChhhhHHHHHHHhhhhhh
Q 002814 519 LCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAF-----GRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
|....+-..-..+|++.+.. .-.|...+... |.-| .+.|.+++|-..+.++.+...+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 88888878888888887643 22344444443 3333 4678888887777666665433
No 410
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=46.06 E-value=4.4e+02 Score=28.88 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 337 YNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416 (877)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 416 (877)
.|-++.-|...|+..+|.+..+++...-+. +...-.+++.+....-.-.-.+.++++-.+. +...-+.+..++.+
T Consensus 217 In~~l~eyv~~getrea~rciR~L~vsffh-he~vkralv~ame~~~ae~l~l~llke~~e~----glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGVSFFH-HEGVKRALVDAMEDALAEGLTLKLLKEGREE----GLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCCCchh-hHHHHHHHHHHHhhhhcccceeccchhhhhh----cchhhhccccCchh
Confidence 355667788888888888888777654222 3333444444433322222223334433333 22333334444444
Q ss_pred cCC--------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002814 417 LGR--------FEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (877)
Q Consensus 417 ~g~--------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 488 (877)
.+. ...|...|+.+.-....-+..--+++-..-...|+.+. .+.|++ +...+|+-|...|
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFlsg 359 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFLSG 359 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHhcC
Confidence 432 34555566655433211111111222222223444332 223322 2345777888888
Q ss_pred CHHHHHHHHHHH
Q 002814 489 LYKEAMQIFREF 500 (877)
Q Consensus 489 ~~~~A~~~~~~m 500 (877)
+..+..+.++++
T Consensus 360 Dt~Evi~~L~DL 371 (645)
T KOG0403|consen 360 DTPEVIRSLRDL 371 (645)
T ss_pred ChHHHHHHHHHc
Confidence 888777777654
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.65 E-value=1e+02 Score=26.57 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
|..|+..|...|.+++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66667777777777777777766655
No 412
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.17 E-value=6.2e+02 Score=30.43 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 239 (877)
..+=+.|...|+|+.|++.-... +..-..++..-++.|...+++..|.++|.++.+ .|..+.--+.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl 427 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFL 427 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHH
Confidence 34556788899999998875422 111123455566778888899999999988743 3333443444
Q ss_pred hcCCHHHHHHHH
Q 002814 240 RSGYCQEAISVF 251 (877)
Q Consensus 240 ~~g~~~~A~~~~ 251 (877)
...+.+ ++..|
T Consensus 428 ~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 428 EINQER-ALRTF 438 (911)
T ss_pred hcCCHH-HHHHH
Confidence 555544 44433
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.93 E-value=3.4e+02 Score=27.27 Aligned_cols=21 Identities=5% Similarity=-0.057 Sum_probs=15.1
Q ss_pred HhcCchhhHHHHHHHhhhhhc
Q 002814 724 WHFGQKRGAQLVVLEGKRRQV 744 (877)
Q Consensus 724 ~~~g~~~~A~~~~~~~~~~~~ 744 (877)
--+|+.++|+++-+++.+..+
T Consensus 180 ei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HTSS-HHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHH
Confidence 458999999998877766544
No 414
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.62 E-value=2.5e+02 Score=28.74 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK---- 486 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---- 486 (877)
|.+++..+++.+++...-+--+.--+....+...-|-.|.|.|+...+.++-..-++.--.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555666555543322211110122333334444566666666666555555443222223335555544433
Q ss_pred -cCCHHHHHHHH
Q 002814 487 -GGLYKEAMQIF 497 (877)
Q Consensus 487 -~g~~~~A~~~~ 497 (877)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555443
No 415
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.23 E-value=4e+02 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSE 394 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~ 394 (877)
+......||+-|+-+.|++.+.+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 34444555555555555555444
No 416
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.99 E-value=4.2e+02 Score=28.08 Aligned_cols=78 Identities=8% Similarity=0.059 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK---GGLYKEAMQIF 497 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~~~ 497 (877)
+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.|++++... +-+...|...|..... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44455666655553 4555666666666666666666666666666652 2245555555554332 12344444444
Q ss_pred HHH
Q 002814 498 REF 500 (877)
Q Consensus 498 ~~m 500 (877)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 443
No 417
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.88 E-value=3e+02 Score=26.40 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQAGL--------------KADVVLYSALIDALCKNGLVESAVSLLD 533 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (877)
+++-.|.+..++.++.++++.|.+..+ .+--...|.-...+.+.|..|.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 455566666777777777777665322 1222344555556666666666666665
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.47 E-value=1.3e+02 Score=24.55 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHch
Q 002814 348 AQMDLAFEIMAEMP 361 (877)
Q Consensus 348 g~~~~A~~~~~~m~ 361 (877)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.06 E-value=5e+02 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 523 (877)
..+.+.|+..+..|.+.|..|....-..++.++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3566666666666666665555444444444444444
No 420
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.75 E-value=1.6e+02 Score=33.29 Aligned_cols=151 Identities=13% Similarity=0.010 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHchhCCCCCCHHHH
Q 002814 296 QPDRITFNSLLAVCSRG--GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC-KGAQMDLAFEIMAEMPAKNISPNVVTY 372 (877)
Q Consensus 296 ~p~~~t~~~ll~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~pd~~~~ 372 (877)
-|+..+.-+++.-.... ..-+-+-.++..|.+ -+.|--...| +...|- -.|+...|...+.........-..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 34555555544333322 233445555555543 2223222222 233333 468888888887766543222234555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 450 (877)
..|...+.+.|...+|-.++.+..... .....++..+.++|....+++.|++.|+...+.. +.+...-+.|...-|
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 667777778888889999998877664 4556788889999999999999999999998876 567777777766555
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.49 E-value=48 Score=20.36 Aligned_cols=28 Identities=4% Similarity=0.017 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 002814 693 IWVQALSLFDEVKLMDSSTASAFYNALTD 721 (877)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 721 (877)
..++|.++|++++...| .+..+|..++.
T Consensus 2 ~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 34556666666665555 45555555443
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.97 E-value=1e+02 Score=25.56 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=27.7
Q ss_pred HccCCHHHHHHHHHHH----HHccccCC--ChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002814 167 GNRGEWSKAIQCFAFA----VKREERKN--DQGKLASAMISILGRLGKVDLAKNIFETALN 221 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~----~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (877)
.+.|++.+|++.+.+. ........ ........+.......|+.++|.+.++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777775544443 33321110 0112223345556666777777777666654
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.84 E-value=88 Score=22.25 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
.+.|...++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666777766666666666655543
No 424
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.71 E-value=20 Score=37.25 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=58.0
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
....|.+++|++.|..++..+ +....+|..-..++.+.++...|++=++.++..... +..-|-.--.+..-.|.++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchH
Confidence 345677888888887777774 444556666667777777777777777777665322 2233333333444556777
Q ss_pred HHHHHHHHHHhCCCCCCH
Q 002814 246 EAISVFNSMKRYNLKPNL 263 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~ 263 (877)
+|...|....+.++.+..
T Consensus 200 ~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHHhccccHHH
Confidence 777777766665554433
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.21 E-value=4.5e+02 Score=27.60 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchh----CCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPA----KNISPNVVTYSTMIDG-YAKAGRLDDALNMFSEMKFLGIGL 402 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~pd~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p 402 (877)
..+-....-||+.|+.+.|++.+.+-.+ .|.+.|++-+..-+.. |....-..+-++..+.+.+.|...
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh
Confidence 4556667789999999999888776543 4666677666554443 333333455555555566665433
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.06 E-value=73 Score=28.33 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCC-cchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 696 QALSLFDEVKLMDSS-TASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 696 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
.+.++|+.|...+.. ..+.+|...+..+...|++++|.+++..|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 555666666543332 557899999999999999999999998763
No 427
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.85 E-value=82 Score=25.20 Aligned_cols=48 Identities=6% Similarity=-0.067 Sum_probs=30.9
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CCHH-HHHHHHHHHhhcCChhhhHHHHH
Q 002814 521 KNGLVESAVSLLDEMTKEGIR-PNVV-TYNSIIDAFGRSATTECTVDDVE 568 (877)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~-p~~~-~~~~li~~~~~~g~~~~a~~~~~ 568 (877)
...+.++|+..++..++.-.. ++.+ ++..++.+++..|++++.++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777654222 2222 67777888888888777766543
No 428
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.88 E-value=2.6e+02 Score=24.52 Aligned_cols=29 Identities=3% Similarity=0.100 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 002814 644 NVVTFSAILNACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (877)
|..++..|-.++...|++++++...+..+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34567778889999999999887766554
No 429
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.64 E-value=1.7e+02 Score=25.86 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
+..+.++.+....+.|+......-+.+|-+.+++..|.++|+-.+.+ +.+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 34445555666677788888888888888888888888888877654 2233334554443
No 430
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.36 E-value=1e+02 Score=27.62 Aligned_cols=55 Identities=7% Similarity=0.077 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchh
Q 002814 625 EILCILGVFQKMHKLKIKPNV--VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~ 680 (877)
+.++-+.+|++... .-.|+. ...-.|.-+|.+.|++++++++.+.+++..|++..
T Consensus 50 dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 50 DVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 67788889999886 233432 22334556788999999999999999987776644
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.90 E-value=4.2e+02 Score=26.62 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHH-----HHHcCCCHHHHHHHHHHHH
Q 002814 641 IKPNVVTFSAILN-----ACSRCNSFEDASMLLEELR 672 (877)
Q Consensus 641 ~~Pd~~t~~~ll~-----a~~~~g~~~eA~~~~~~~~ 672 (877)
+.|...++..|+- -|-..|+.++|.++.+.+.
T Consensus 160 L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 160 LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5565554433332 2234677777766655543
No 432
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.63 E-value=4.6e+02 Score=27.06 Aligned_cols=114 Identities=11% Similarity=0.149 Sum_probs=62.8
Q ss_pred HHHHHHHHHHchh-CCCCCCHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 350 MDLAFEIMAEMPA-KNISPNVVTYSTMIDGYAK-AGR-LDDALNMFSEMKF-LGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 350 ~~~A~~~~~~m~~-~g~~pd~~~~~~li~~~~~-~g~-~~~A~~~~~~m~~-~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+.. .+-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455666652221 1222355555555554444 211 1122222222222 2335666777777777777788877777
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 426 VCKEMESS-GIRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (877)
Q Consensus 426 ~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (877)
+++..... +...|...|..+|....+.|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77766544 445677777777777777777665544443
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.99 E-value=5.6e+02 Score=27.82 Aligned_cols=180 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCC
Q 002814 194 KLASAMISILGRLGKVDLAKNIFETALN--EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY---------NLKPN 262 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 262 (877)
..+.-+.+.|..+|+++.|.+.|-++.. ......+..|-.+|..-.-.|++........+.... -+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 002814 263 LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ------PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFT 336 (877)
Q Consensus 263 ~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~------p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 336 (877)
..++..+...+.+ .++.|.+.|-.....-+. |...+....+.+.+-.++-+--+.+.....-..+---.-.
T Consensus 231 l~C~agLa~L~lk---kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 231 LKCAAGLANLLLK---KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhC-----CCCCCHHHHHHHHH
Q 002814 337 YNTLLDAICKGAQMDLAFEIMAEMPAK-----NISPNVVTYSTMID 377 (877)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd~~~~~~li~ 377 (877)
.-.++..|+. +++..++++++++... -+.|.+.+.-.+|+
T Consensus 308 lr~il~~fy~-sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREILFKFYS-SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHhh-hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 434
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.59 E-value=2.3e+02 Score=23.34 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN-TVYAFSALISAYGRSGY 243 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~ 243 (877)
|.+...-..+...+...|++++|.+.+-.+++..... +-..-..|+..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4555566677777888888888888877777654332 33444555555555444
No 435
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.52 E-value=2e+02 Score=23.55 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=37.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (877)
Q Consensus 283 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 354 (877)
+.++++.+...|+- +..-...+-.+-...|+.+.|.+++..+. +| ...|...++++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 44566666666543 22233333322235577777777777777 54 334666777777766655543
No 436
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.39 E-value=83 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 512 YSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.-.+|.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555666666666666555554
No 437
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.12 E-value=1.8e+02 Score=25.50 Aligned_cols=59 Identities=29% Similarity=0.353 Sum_probs=26.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH----ccccCCChHHHHHHHH----HHHHhcCChHHHHHHHHH
Q 002814 160 TFLLRELGNRGEWSKAIQCFAFAVK----REERKNDQGKLASAMI----SILGRLGKVDLAKNIFET 218 (877)
Q Consensus 160 ~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~ 218 (877)
..|..++...|+|++++..-+.++. ++....+..+.|.+.+ .++-..|+.++|...|+.
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3356666677777766655544442 2322333344433322 234445555555555543
No 438
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.07 E-value=7.6e+02 Score=29.10 Aligned_cols=117 Identities=13% Similarity=0.229 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----------HHHHHHHHHcCCCCH
Q 002814 214 NIFETALNEGYGNT---VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVT----------YNAVIDACGKGGVDF 280 (877)
Q Consensus 214 ~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----------~~~ll~~~~~~g~~~ 280 (877)
..+++|..+--.|+ ..+...++-.|....+++..+++.+.+++. ||..- |...++---+-| +-
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G-DR 259 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG-DR 259 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc-cH
Confidence 34455554422333 234444555566666777777777777653 33221 223333333445 66
Q ss_pred HHHHHHHHHHHHC-C-CCCCHHHHH-----H--HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 002814 281 KHVVEIFDDMLRN-G-VQPDRITFN-----S--LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFT 336 (877)
Q Consensus 281 ~~a~~~~~~m~~~-g-~~p~~~t~~-----~--ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 336 (877)
++|+...-.|++. | +.||.+... - +-+.|...+..+.|..+|++.-+ ++|+..+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~s 322 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYS 322 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhc
Confidence 7777766666543 2 445543211 1 11223445566677777777665 3455443
No 439
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.02 E-value=3e+02 Score=29.15 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 002814 489 LYKEAMQIFREFKQAGLKADV----VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 489 ~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 555 (877)
-.++...++.++++. .|+. ..|-+++......|.+++.+.+|++++..|-.|-...-..+++.+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 345777777777764 3454 4678888888899999999999999999999988888777887765
No 440
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.94 E-value=1.5e+02 Score=25.57 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMES 432 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (877)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666665554
No 441
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.91 E-value=1.9e+02 Score=33.06 Aligned_cols=19 Identities=11% Similarity=-0.135 Sum_probs=12.8
Q ss_pred HHHhcCchhhHHHHHHHhh
Q 002814 722 MLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~ 740 (877)
++...|+++-|.++..-++
T Consensus 818 L~~~~~~~~~A~KWc~~~L 836 (872)
T KOG4814|consen 818 LYIIKDNKSNAIKWCKHSL 836 (872)
T ss_pred eeeeccchhhHHHHHHHHH
Confidence 5566777777777765544
No 442
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=36.21 E-value=1.7e+02 Score=32.59 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=3.4
Q ss_pred CCHHHHHH
Q 002814 170 GEWSKAIQ 177 (877)
Q Consensus 170 g~~~~A~~ 177 (877)
+.|..|+.
T Consensus 328 ~sW~~ava 335 (582)
T PF03276_consen 328 GSWASAVA 335 (582)
T ss_pred ccHHHHHH
Confidence 34444443
No 443
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=36.18 E-value=2.2e+02 Score=35.14 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhcc
Q 002814 760 SSGAARAMVHAWLLNIHSIVFEG 782 (877)
Q Consensus 760 s~g~a~~~~~~w~~~~~~~~~~~ 782 (877)
|+|.+-+-+.-++..+..+-..|
T Consensus 1330 SLgs~~tklNffiHnLAQm~fs~ 1352 (1639)
T KOG0905|consen 1330 SLGSAFTKLNFFIHNLAQMRFSG 1352 (1639)
T ss_pred HhhhHHHHHHHHHHHHHHHhccC
Confidence 34444444444444444443333
No 444
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.08 E-value=68 Score=34.72 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 5 PPHCSITATKPYQNHQYPHNHLKNNHHRQSHHP-SSRPHWTSHKVSLTKPPLSPSPRNA 62 (877)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pp~~p~p~~~ 62 (877)
.|||.|..+.-.+.|+.+.++..-+++. | -.+|....|..+.++||++|+|.++
T Consensus 419 yppp~p~f~m~~~hP~~~~p~~~~g~~~----P~~~mpp~~P~~~~pppP~~pp~p~~~ 473 (483)
T KOG2236|consen 419 YPPPSPSFPMFQPHPPESNPPANFGQAN----PFNQMPPAYPHQQSPPPPPPPPPPNSP 473 (483)
T ss_pred CCCCCCCCCccCCCCCCCCCcccccccC----ccccCCCCCccccCCCCCCCCCCCCCh
No 445
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.94 E-value=1.1e+02 Score=22.35 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=17.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 516 IDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (877)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (877)
.-++.+.|++++|.+..+.+++ ++|+..-...|
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 3455666666666666666665 35555433333
No 446
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.78 E-value=9.5e+02 Score=29.84 Aligned_cols=248 Identities=13% Similarity=0.072 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 002814 296 QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (877)
Q Consensus 296 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 375 (877)
.+|..+-...+..+.+.+..+ +...+..+++. +|..+-...+.++.+.+........+..+... +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 456666666667776666533 44444455542 45555556666665543322222333333332 466665566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 455 (877)
+..+...+..+ .. .+-.+.. .+|...-...+.++.+.+..+. + ..+.. .++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---V-AGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66665543221 12 2222222 4455555566666666554332 2 22222 45666666667777776654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002814 456 DE-VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (877)
Q Consensus 456 ~~-A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (877)
+. +...+..+.. .+|...-...+.++.+.|....+...+..+.+. +|...-...+.++.+.+. +++...+-.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 3444445543 346777777788888887765554445555542 455566666777777665 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 535 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
+.+ .|+...-...+.++++...-..+...+..++.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 664 45666777777777775333445555555554
No 447
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.46 E-value=1.9e+02 Score=28.58 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHccccC---CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 002814 172 WSKAIQCFAFAVKREERK---NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 225 (877)
+..|++.|..+......+ .+...+.-.+.....+.|+.++|.+.|.+++..+-.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 456888888887665432 233456667788889999999999999999886533
No 448
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.42 E-value=1.1e+02 Score=29.61 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 540 IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 540 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
..|+..+|..++.++...|+.++|.+...++...+|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456777777777777777777777776666666665
No 449
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.25 E-value=5e+02 Score=28.31 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=24.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHch
Q 002814 309 CSRGGLWEAARNLFNEMVHRGIDQDIF--TYNTLLDAIC--KGAQMDLAFEIMAEMP 361 (877)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~ 361 (877)
+.+.+++..|.++|+.+.+. ++.+.. .+..+..+|. ...++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566666666666666654 333332 2333333332 2334444555444443
No 450
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.15 E-value=2.8e+02 Score=31.87 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMKADC--VSPNLLTYSTLIDVYSKGGLYK------EAMQIFREFKQAGLKADVVLYSAL 515 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 515 (877)
+|+.+|...|++..+.++++...... -+.=...||..|..+.+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67777777777777777777766432 2222455666666666666543 2333333333 33466666666
Q ss_pred HHHH
Q 002814 516 IDAL 519 (877)
Q Consensus 516 i~~~ 519 (877)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 451
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.97 E-value=6.6e+02 Score=27.74 Aligned_cols=33 Identities=18% Similarity=0.060 Sum_probs=19.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..+.+.|+..+..|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 366777777777777777655544444444333
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.88 E-value=4.1e+02 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=11.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 002814 236 SAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~ 256 (877)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555666666666655554
No 453
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.81 E-value=1.3e+02 Score=28.97 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 002814 627 LCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN 676 (877)
Q Consensus 627 ~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (877)
...++..++... ..|+..+|..++.++...|+.++|.+..+++...-|
T Consensus 128 ~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555566555 789999999999999999999999999999987666
No 454
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.69 E-value=38 Score=30.09 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
+.+.|.-.+|..+|.+|++.|.+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 4455566667777777777776665 56666654
No 455
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=9e+02 Score=29.20 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=34.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
+=..|...|+++.|.++-..- |+ ..++..-...|...+++..|-++|-++.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 445677888888888766533 22 12334445667788889999999888743
No 456
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.56 E-value=95 Score=23.51 Aligned_cols=7 Identities=71% Similarity=1.331 Sum_probs=2.1
Q ss_pred cCCHHHH
Q 002814 417 LGRFEEA 423 (877)
Q Consensus 417 ~g~~~~A 423 (877)
.|++++|
T Consensus 36 lg~~~~a 42 (62)
T PF14689_consen 36 LGKYEEA 42 (62)
T ss_dssp TT-HHHH
T ss_pred CCCHHHH
Confidence 3333333
No 457
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.45 E-value=3.5e+02 Score=29.48 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 002814 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDVYSK--GGLYKEAMQIFREFKQAGLK--ADVVLYSALIDAL 519 (877)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~ 519 (877)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++........ -....+..++...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 520 CKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
-..............-.+.-..+-....-.-..--...|+++.|+-.+-++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
No 458
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.19 E-value=1e+03 Score=29.68 Aligned_cols=199 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 002814 233 ALISAYGRSGYCQEAISVFNSMK-RYN--LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL--- 306 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~-~~g--~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll--- 306 (877)
..|+-+...+++.+|+.+.++=+ ..+ +.-|...|-.=+..+.+.=.+.+-.-.++..+... ......|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--cccccccccccccc
Q ss_pred ---------HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHchhCCCCCCHHHHHHH
Q 002814 307 ---------AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA--QMDLAFEIMAEMPAKNISPNVVTYSTM 375 (877)
Q Consensus 307 ---------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~~~~~l 375 (877)
......+++...-+.+.+..+. ..........++.+|++.+ ++++|+.+..++.+.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~------------ 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE------------ 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc------------
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------
Q 002814 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY------ 449 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~------ 449 (877)
+...|.+.++.+.-. ..-...|+.-+..| +++.|+.+-++-.+ |+.-|--+++-+
T Consensus 844 --------~~~~ae~alkyl~fL--vDvn~Ly~~ALG~Y----Dl~Lal~VAq~SQk-----DPKEYLPfL~~L~~l~~~ 904 (928)
T PF04762_consen 844 --------DPESAEEALKYLCFL--VDVNKLYDVALGTY----DLELALMVAQQSQK-----DPKEYLPFLQELQKLPPL 904 (928)
T ss_pred --------ChHHHHHHHhHheee--ccHHHHHHHHhhhc----CHHHHHHHHHHhcc-----ChHHHHHHHHHHHhCChh
Q ss_pred -------HHcCCHHHHHHHHHHH
Q 002814 450 -------GKQGKYDEVRRMFEQM 465 (877)
Q Consensus 450 -------~~~g~~~~A~~~~~~m 465 (877)
...+++++|++.+.++
T Consensus 905 ~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 905 YRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred heeeeHhhhhCCHHHHHHHHHhh
No 459
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.37 E-value=5.5e+02 Score=26.38 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhh
Q 002814 544 VVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCR 623 (877)
Q Consensus 544 ~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 623 (877)
..+|.+++.-+.+....+.|++
T Consensus 26 hqm~RTl~fR~~~~K~~~~aie---------------------------------------------------------- 47 (312)
T KOG3024|consen 26 HQMYRTLVFRYTRQKAHEDAIE---------------------------------------------------------- 47 (312)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH----------------------------------------------------------
Q ss_pred HhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHH
Q 002814 624 QEILCILGVFQKMHKLKIKPNVVTFSAILNACSR---CNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSL 700 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~---~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~ 700 (877)
.+......|=+..+.|..+|..++ +++.+.+ ..++.....+.+-..+.++.... +..-...|++.
T Consensus 48 -L~~~ga~~ffk~~Q~~saaDl~~~--~le~~eka~~ad~~~~~anl~~ll~e~~~~epe---------r~~~v~raikW 115 (312)
T KOG3024|consen 48 -LLYDGALCFFKLKQRGSAADLLVL--VLEVLEKAEVADSLLKVANLAELLGEADPSEPE---------RKTFVRRAIKW 115 (312)
T ss_pred -HHHHHHHHHHHhccCCCchhHHHH--HHHHHHHHHhhHhHHHHHHHHHHHhhcCCCccH---------HHHHHHHHHHH
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHh
Q 002814 701 FDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (877)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (877)
..+.-+-.- .++...+.|++.+|.-++.++|...|..+
T Consensus 116 S~~~~~~k~-G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 116 SKEFGEGKY-GHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HhhcCCCCC-CCHHHHHHHHHHHHhcccHHHHHhHhhhc
No 460
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.63 E-value=1.7e+02 Score=30.51 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 5 PPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPF 79 (877)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~ 79 (877)
|-+...++.+.-++.|.|.+-++|.+|. +.|.-+.|.....+|..++.+...+.+...+..+.....++
T Consensus 418 ~g~a~~~pt~~~PprPppqggppP~g~~------~~p~~~~hl~~~gppq~prt~sr~s~~~t~~q~~~t~Ag~~ 486 (488)
T KOG3895|consen 418 PGPAQASPTRRLPPRPPPQGGPPPRGHM------SDPVGSRHLDHDGPPQIPRTGSRESVDDTMGQLKRTFAGFF 486 (488)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccc------CCccccccCCCCCCCCCCCCCCCCCCccccccCCccccCCC
No 461
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.45 E-value=6.1e+02 Score=26.64 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhccCCCcccccCCCchhHHHHHHH
Q 002814 52 KPPLSPSPRNAPKPAATSTTVAPNPKPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHH 131 (877)
Q Consensus 52 ~pp~~p~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (877)
.||.-+++.++++++.++....+++.++...+..++.+....+.-+.............-.+.......-..+.-++...
T Consensus 138 ~pP~ys~~~~~~p~p~p~~~~~~~p~~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~irasvisa~~e 217 (365)
T KOG2391|consen 138 DPPVYSRSLPSPPPPYPQTEYNTPPLKPKGSAYKPPLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVIRASVISAVRE 217 (365)
T ss_pred CCccccCCCCCCCCCCCcccCCCCCCCCCCcCcCCCCCCCCCCCccccCcccCCCCCCcCCCCcccccchhHHHHHHHHH
Q ss_pred HHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHH
Q 002814 132 VTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL 211 (877)
Q Consensus 132 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (877)
.+.... ++.+.+....++.--...+....-.+.+ ...-+.+.++-.....+..+++.-... ..++
T Consensus 218 klR~r~-eeeme~~~aeq~slkRt~EeL~~G~~kL---------~~~~etLEqq~~~L~~niDIL~~k~~e-----al~~ 282 (365)
T KOG2391|consen 218 KLRRRR-EEEMERLQAEQESLKRTEEELNIGKQKL---------VAMKETLEQQLQSLQKNIDILKSKVRE-----ALEK 282 (365)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhHHHHHhhHHHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHH-----HHhh
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002814 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD 289 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~ 289 (877)
|..+-..=...++......+..++.+|+.-.-.++|+..+++..+.|+- +...|---.+.+.+.. -+-.|..-+.+
T Consensus 283 ~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsReQ-F~~rat~qk~r 358 (365)
T KOG2391|consen 283 AENLEALDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSREQ-FILRATMQKCR 358 (365)
T ss_pred hccCcCCCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHHH-HHHHHHHHHHH
No 462
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.25 E-value=6.1e+02 Score=26.54 Aligned_cols=169 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+++.--+.++..+-++.-..++..+ +.-..+|..+.. -..--+.+|+++|.++++.+-. .|.++
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN---~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~-----------~yr~s 253 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEIN---NECATAYVLLAE--EEATTIVDAERLFKQALKAGET-----------IYRQS 253 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcC---chhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHH-----------HHhhH
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR-ITFNSLLAVCSRGGLWEAARN 320 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~ 320 (877)
.+.+.--...+.+.+++...-+..-..+.-+..+.| +..+|.+.|+++.+.-.-.+. .....|+.++....-+.++..
T Consensus 254 qq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklG-rlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 254 QQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLG-RLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred HHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002814 321 LFNEMVHRGIDQDIFTYNTLLDAICKG 347 (877)
Q Consensus 321 ~~~~m~~~g~~~~~~~~~~li~~~~~~ 347 (877)
++.+..+...+.......+-.-.-.+.
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHH
No 463
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.24 E-value=1.6e+02 Score=20.86 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
++....+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
No 464
>PRK10941 hypothetical protein; Provisional
Probab=31.99 E-value=5.4e+02 Score=26.46 Aligned_cols=86 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 002814 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VSPNLLTYSTLID 482 (877)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~ 482 (877)
....+.+-.+|.+.++++.|+.+.+.+.... +.|..-+.--.-.|.+.|.+..|..=++..++.. -.|+.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q ss_pred HHHhcCCH
Q 002814 483 VYSKGGLY 490 (877)
Q Consensus 483 ~~~~~g~~ 490 (877)
...+....
T Consensus 260 ~l~~~~~~ 267 (269)
T PRK10941 260 SIEQKQIV 267 (269)
T ss_pred HHhhcCcc
No 465
>PF14967 FAM70: FAM70 protein
Probab=31.68 E-value=5.5e+02 Score=26.40 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPFH 80 (877)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~~ 80 (877)
|+..|+++++.---+.+....+.+.....++.|+-+..+.| .-.....+.+++.-.+-+.-+.+++.+++---++..++
T Consensus 231 ~a~~~~~pp~ilynpaqqilay~gf~p~~~~lP~~ssYPlp-lQ~~~~fP~s~ss~ls~sed~q~ps~s~s~~lp~~aPp 309 (327)
T PF14967_consen 231 LAYGPSPPPQILYNPAQQILAYAGFCPSPPTLPTYSSYPLP-LQPSSSFPASPSSDLSLSEDPQPPSQSSSYGLPPNAPP 309 (327)
T ss_pred hcCCCCCCCCcCCCCCCccccccCccCCCCCCCCCCCcCcc-CCccCCCCCCCCccCCcccCCCCCCCCcccCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 002814 81 SLSPLPSSKSELAPDFSG 98 (877)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (877)
..+|.--.+-+..|.-++
T Consensus 310 ~y~P~yf~PgEKPPPYaP 327 (327)
T PF14967_consen 310 RYAPPYFPPGEKPPPYAP 327 (327)
T ss_pred CCCCCCCCCCCCCcCCCC
No 466
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.03 E-value=1.8e+02 Score=31.75 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 6 PHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVS--LTKPPLSPSPRNAPKPAATSTTVAPNPKPFHSL 82 (877)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~~~~ 82 (877)
|-.+..+-+.++.+.+|++.+....++++|+.+..+.-++.-.+ ..+|-.|...++++|+.++++.++-....+++.
T Consensus 404 p~~~~~s~p~pq~qNyppp~p~f~m~~~hP~~~~p~~~~g~~~P~~~mpp~~P~~~~pppP~~pp~p~~~~~q~q~~~y 482 (483)
T KOG2236|consen 404 PSSSDNSGPSPQQQNYPPPSPSFPMFQPHPPESNPPANFGQANPFNQMPPAYPHQQSPPPPPPPPPPNSPMNQMQNPSY 482 (483)
T ss_pred ccccCCCCCCcccCCCCCCCCCCCccCCCCCCCCCcccccccCccccCCCCCccccCCCCCCCCCCCCChhhcccCCCC
No 467
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.78 E-value=3.4e+02 Score=27.01 Aligned_cols=105 Identities=17% Similarity=0.051 Sum_probs=0.0
Q ss_pred CchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHH
Q 002814 138 DDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFE 217 (877)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 217 (877)
|....+.+++.+......++-...++..+..+|+.+.|+.++..+.-. ..+......++.. ..++.+.+|...-+
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~----l~s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP----LSSPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC----CCCHHHHHHHHHH-HHcCCHHHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHH
Q 002814 218 TALNEGYGNTVYAFSALISAYG----RSGYCQEAISV 250 (877)
Q Consensus 218 ~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~ 250 (877)
...+. .....+..++..+. +.+..++-+.+
T Consensus 165 ~~~~~---~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 165 SYPDE---LRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred hCchh---hhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 468
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=30.77 E-value=7.4e+02 Score=27.07 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHH-----HH
Q 002814 284 VEIFDDMLRNGVQPDRIT-FNSLLAVCSRGGLWEAARNLFNEMVHRGI--DQDIFTYNTLLDAICKGAQMDLA-----FE 355 (877)
Q Consensus 284 ~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A-----~~ 355 (877)
..+|...+.-..+||... |+.+.+.=.++.--+..+++.+.|....- .+-+.-..++|..||+..+++-. +.
T Consensus 39 ~~~W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~ 118 (669)
T KOG3636|consen 39 KSDWMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWIT 118 (669)
T ss_pred HHHHHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHH
Q ss_pred HHHHchhCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHHcC
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDG--------YAKAGRLDDALNMFSEMKF---------LGIGLDRVSYNTVLSIYAKLG 418 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~---------~g~~pd~~~~~~li~~~~~~g 418 (877)
+++.+....++ -..+||..... |...|+.-...+++-+... ..+.||..+.|-+.+.++..-
T Consensus 119 lL~pl~~L~lp-rsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~ 197 (669)
T KOG3636|consen 119 LLEPLLLLNLP-RSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSM 197 (669)
T ss_pred HHHHHHHhcCC-cchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhh
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGY--------GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 419 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--------~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
..+-...+++-..+.+ .|-.+-+-++|-.. .+...-++++++++.|...--.-|+.-+-.|...|+
T Consensus 198 Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 198 STEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
No 469
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=30.59 E-value=43 Score=36.47 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 52 KPPLSPSPRNAPKPAATSTTVAPNPKP 78 (877)
Q Consensus 52 ~pp~~p~p~~~~~p~~~~~~~~~~~~~ 78 (877)
.|+|+|.|.|.|+|+|+|++.|.+.++
T Consensus 4 ~p~P~P~P~P~P~P~P~P~PePtP~~~ 30 (465)
T PF01690_consen 4 EPPPSPGPSPTPPPPPAPTPEPTPAKH 30 (465)
T ss_pred CCCCCCCCCCCCCCCCcccCCCcccCc
No 470
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=30.51 E-value=5.5e+02 Score=28.57 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q 002814 2 ASTPPHCSITAT-KPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRN-APKPAATSTTVAPNPKPF 79 (877)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~-~~~p~~~~~~~~~~~~~~ 79 (877)
+|.-|-.+.-|. |.-+..+.-+-.++.++.+..+..+-+|..+.-+.++..|-.+-+|.. .++..+.+|..+..|.-+
T Consensus 575 lSK~Pe~PK~Pk~PKdPksPK~PK~Prspq~P~~PkSPk~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkRPEsPKiP 654 (943)
T PTZ00449 575 LSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKII 654 (943)
T ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCC
Q 002814 80 HSLSPLPSSKSELAPDF 96 (877)
Q Consensus 80 ~~~~~~~~~~~~~~~~~ 96 (877)
-+..+..+++....|.|
T Consensus 655 esPK~PkSPKpP~dPKF 671 (943)
T PTZ00449 655 KSPKPPKSPKPPFDPKF 671 (943)
T ss_pred CCCCCCCCCCCCCCCcc
No 471
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=30.17 E-value=5e+02 Score=32.32 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC--CCCCCCCCCCCCCCCCCC
Q 002814 2 ASTP-PHCSITATKPYQNHQ-YPHNHLKNNHHRQSHHPSSRPHWTSHKVSLT-KPPLSPS--PRNAPKPAATSTTVAPNP 76 (877)
Q Consensus 2 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pp~~p~--p~~~~~p~~~~~~~~~~~ 76 (877)
+..| |.++++-.+...-++ .|.....-.+-.+++.-+..|-.+..+.... +-++... |++.|+-.+-+..+|..+
T Consensus 95 ~~~p~Pi~sss~~pq~~F~p~~p~~s~sgp~~~~~~~~~~~~~~sk~p~~~~v~~~~~~~~~P~p~Ppy~s~pg~pP~~s 174 (1639)
T KOG0905|consen 95 PRGPIPIPSSSIYPQNYFQPQWPKASLSGPSLYPAPGSPGGPEYSKQPAAQSVSLLPDMYFVPPPLPPYTSVPGVPPQHS 174 (1639)
T ss_pred CCCCCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCCCCcccCCCccccccccCcccCcCCCCCCccccCCCCCCCCC
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhccCCCcccccCCCc
Q 002814 77 -KPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHS 122 (877)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (877)
.|.+..+|.-.++......++........++..-...+......|+
T Consensus 175 ~~~~Sp~sp~h~sqps~~s~~s~~a~~~~~~~~~is~~~e~~~~g~s 221 (1639)
T KOG0905|consen 175 RRPQSPPSPIHHSQPSDSSTFSHVAPFPAKSQDKISSEKEFENNGHS 221 (1639)
T ss_pred CCCCCCCCCCCCCCCCCCccccccCCchhhhhhhhcccchhhcCCCc
No 472
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.37 E-value=96 Score=32.02 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 512 YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
|+.-|..-.+.|++++|+.++++..+.|+.--..+|..-++.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~~ 301 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVKG 301 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhhc
No 473
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.10 E-value=3.2e+02 Score=24.20 Aligned_cols=60 Identities=12% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 342 (877)
+..+-+..+....+.|+......-+++|.+.+++..|.++|+.+..+ +.+....|-.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
No 474
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=28.81 E-value=92 Score=33.90 Aligned_cols=72 Identities=26% Similarity=0.394 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCccchhhhhhccCCCccc
Q 002814 45 SHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPK--PFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIA 116 (877)
Q Consensus 45 ~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (877)
+-.+-.--|++||+|+..|.++-...-.||+|+ ++++++|+-..-....+..+.....+...+++|...+..
T Consensus 222 ~~~~~~~~P~~P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~~~~L~~~v~~~~~~~~~r~~~KL~Wr~~~~~ 295 (817)
T KOG1925|consen 222 SLAPEPKEPLIPASPKELPTRDFLLSGVPPPPPKGPFPPPPPLAAPLPHSVPDSSALPTKRKTVKLFWRDVKLA 295 (817)
T ss_pred cCCCCCCCCCCCCChhccCCchhhhcCCCCCCCCCCCCCCCCCcccCcCCCCCcccccccCceeEEEeecceec
No 475
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=28.64 E-value=1.1e+03 Score=28.32 Aligned_cols=420 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred cCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHH
Q 002814 136 ARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNI 215 (877)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 215 (877)
+....-+..+...+.........+..+|..+...|++++....-..|...-+.++....-|..=.......+...++..+
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 002814 216 FETALNEGYGNTVYAFSALISAYGRSGY--------------CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (877)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~li~~~~~~g~--------------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 281 (877)
|++++.. ..++..|.-.+..+...+. +++|+..+..-...|.. ....|.-+=..|..+- ..+
T Consensus 173 ~ekal~d--y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~-~we~~~E~e~~~l~n~-~~~ 248 (881)
T KOG0128|consen 173 FEKALGD--YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAA-IWEMYREFEVTYLCNV-EQR 248 (881)
T ss_pred HHHHhcc--cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHH-HHHHHHHHHHHHHHhH-HHH
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHHcC
Q 002814 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR-------------GIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-------------g~~~~~~~~~~li~~~~~~g 348 (877)
+...+|..-+..+ -|..+-+.=+.-..+...++.+..-++.+.+. ...+--..|-.+++.+.+.|
T Consensus 249 qv~a~~~~el~~~--~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G 326 (881)
T KOG0128|consen 249 QVIALFVRELKQP--LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSG 326 (881)
T ss_pred HHHHHHHHHHhcc--chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHH------------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 349 QMDLAFEIMAEMPAKNISPNVVTY------------------STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTV 410 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~pd~~~~------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 410 (877)
..-.-...++++...-+. |...| ..--.+...+...-.-.+=.....+.+-.+..+.+..+
T Consensus 327 ~p~ri~l~~eR~~~E~~~-~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l 405 (881)
T KOG0128|consen 327 DPVRIQLIEERAVAEMVL-DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNL 405 (881)
T ss_pred CchHHHHHHHHHHHhccc-cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 002814 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK-GGL 489 (877)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~ 489 (877)
-..+...=. .+...+......+-..+...|..|-.++ ..|...|.+.......+...+.......++. .++
T Consensus 406 ~~~ls~~~~--l~~~~~~~rr~~~~~~~s~~~s~lr~~F------~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~n 477 (881)
T KOG0128|consen 406 EKDLSMTVE--LHNDYLAYRRRCTNIIDSQDYSSLRAAF------NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKN 477 (881)
T ss_pred HHHHHHHHH--HHHHHHHHHHhhcccchhhhHHHHHHHH------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCChhhhHHH
Q 002814 490 YKEAMQIFREFKQAGLKADVV-LYSALIDALCKNGLVESAVSLLDEMTKEGIRP--NVVTYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 490 ~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~ 566 (877)
.+.++.+++.....| .-+.. .|...+..-...|+...|..+++.....-..| -..++..+...-...|.++.....
T Consensus 478 md~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 478 MDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred hhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Q ss_pred HHHHh
Q 002814 567 VERDL 571 (877)
Q Consensus 567 ~~~~l 571 (877)
.++.+
T Consensus 557 ~~~~~ 561 (881)
T KOG0128|consen 557 PEKVL 561 (881)
T ss_pred HHhhc
No 476
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.60 E-value=3.8e+02 Score=23.04 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 500 (877)
++|..|.+.+...+ .-...+--+-+..+.+.|++++| +..-... ..||...|-+|-. .+.|--+++...+.++
T Consensus 23 ~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHHH--HhhccHHHHHHHHHHH
Q ss_pred HHCC
Q 002814 501 KQAG 504 (877)
Q Consensus 501 ~~~g 504 (877)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
No 477
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.56 E-value=60 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=0.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 002814 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 556 (877)
..|.-.+|..+|++|++.|-.||. |+.|+..+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~~ 140 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAKQ 140 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhcC
No 478
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=28.51 E-value=1.1e+02 Score=31.50 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred hHHHHHhhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 680 GVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 680 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
+.++.....++.|+.++|.++|+.++.+.| .+..++--++...-..++.-+|-.++-+++
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP-~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAP-TNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCC-CCHHHHHHHhHHHHhhhhhHhhhhhhheee
No 479
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.22 E-value=1.2e+03 Score=28.61 Aligned_cols=385 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHH--HHHHhcCChHHHHHHHHHHHHc------------------
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMI--SILGRLGKVDLAKNIFETALNE------------------ 222 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~------------------ 222 (877)
+..+.+..++++|+.+-+.....++........-..+. --+...|++++|.+.|.++...
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~~~~~ 393 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPSENSS 393 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCCcccc
Q ss_pred ----CCCCCHHHHH----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002814 223 ----GYGNTVYAFS----------ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (877)
Q Consensus 223 ----g~~~~~~~~~----------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 288 (877)
+..|+..... +++.-+....+.+.+..-...|... ..--+..+....... --+-+..+=.
T Consensus 394 ~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~-----~~~~~~~~s~~~~~~-~~~~~~~IDt 467 (877)
T KOG2063|consen 394 IEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYM-----NYFKNTLISELLKSD-LNDILELIDT 467 (877)
T ss_pred cceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHH-----hhhhccCcchhhccc-hHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh---CCC
Q 002814 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA---KNI 365 (877)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~ 365 (877)
.+.+.-..-|...-..++..-...-.+++...++.+..+ |..|+..|...|+.++|++++.+... ...
T Consensus 468 tLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~---------y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d 538 (877)
T KOG2063|consen 468 TLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK---------YRELIELYATKGMHEKALQLLRDLVDEDSDTD 538 (877)
T ss_pred HHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc---------HHHHHHHHHhccchHHHHHHHHHHhccccccc
Q ss_pred CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHH
Q 002814 366 SPNVVTYSTMIDGYAKAGRL--DDALNMFSEMKFLGIGLDRVSYNT------------VLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 366 ~pd~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~pd~~~~~~------------li~~~~~~g~~~~A~~~~~~m~ 431 (877)
.--...+.-+++...+.+.- +-.+++-.-..+..-.-....++. .+-.|......+-+...++.+.
T Consensus 539 ~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li 618 (877)
T KOG2063|consen 539 SFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLI 618 (877)
T ss_pred cchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHh
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcC
Q 002814 432 SSGIRKDAVTYNALLGGYGKQGK-----------------YDEVRRMFEQMKADC------VSPNLLTYSTLIDVYSKGG 488 (877)
Q Consensus 432 ~~g~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g 488 (877)
...-..+....+.++..|++.=+ .+......+.--... .-+....|....-.+.+.|
T Consensus 619 ~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~ 698 (877)
T KOG2063|consen 619 SDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLG 698 (877)
T ss_pred HhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhh
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhhcCChhhhH
Q 002814 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCK--NGLVESAVSLLDEMTKE--GIRPNVVTYNSIIDAFGRSATTECTV 564 (877)
Q Consensus 489 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~ 564 (877)
+.++|+.++-..+. |...-+.....+.. .++.+.-..+++..... +..........++.-++..-+..++.
T Consensus 699 khe~aL~Iyv~~L~-----d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~ 773 (877)
T KOG2063|consen 699 KHEEALHIYVHELD-----DIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVL 773 (877)
T ss_pred hHHHHHHHHHHHhc-----chhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHH
Q ss_pred HHH
Q 002814 565 DDV 567 (877)
Q Consensus 565 ~~~ 567 (877)
+.+
T Consensus 774 ~~L 776 (877)
T KOG2063|consen 774 KLL 776 (877)
T ss_pred HhC
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.12 E-value=4.2e+02 Score=28.08 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
..+.--++..-.----++.+.++..+++.-+.....+..|..++..+...|.++.++.+|++++..|..|--..-.++++
T Consensus 104 ~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~d 183 (353)
T PF15297_consen 104 KTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVD 183 (353)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q ss_pred HHHhcCC
Q 002814 237 AYGRSGY 243 (877)
Q Consensus 237 ~~~~~g~ 243 (877)
.+....+
T Consensus 184 iL~~k~~ 190 (353)
T PF15297_consen 184 ILKMKSQ 190 (353)
T ss_pred HHHhhhh
No 481
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=27.80 E-value=1.8e+02 Score=32.12 Aligned_cols=176 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHH----HHHHHHHHHHcC-CHHHH
Q 002814 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVT----YSTMIDGYAKAG-RLDDA 388 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~----~~~li~~~~~~g-~~~~A 388 (877)
++++|++..++..+.+-..++ |-...|.++|+++.++|+.||.+| ....+.+|+=.| .++++
T Consensus 209 ~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~ 275 (545)
T TIGR01228 209 SLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDA 275 (545)
T ss_pred CHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHH
Q ss_pred HHHHH---HHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------------
Q 002814 389 LNMFS---EMKFLGIGLDRVSYNTVLSIYAKLGR--FEEALLVCKEMESSGIRKDAVTYNALLGGY-------------- 449 (877)
Q Consensus 389 ~~~~~---~m~~~g~~pd~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-------------- 449 (877)
.++.. +-...-..-+.......|..+.+.|- +|-.-.+..+..+.|+. +.+.|-..+..|
T Consensus 276 ~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPFRW 354 (545)
T TIGR01228 276 DKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPFRW 354 (545)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCcee
Q ss_pred -HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--------------HHhcCCHHHHHHHHHHHHHCC
Q 002814 450 -GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV--------------YSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 450 -~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~--------------~~~~g~~~~A~~~~~~m~~~g 504 (877)
|-+|+.++-.+.=+.+.+. +++|...++-+=.+ |...|.-.++-..|++|++.|
T Consensus 355 vaLSGdpeDi~~TD~~~~e~-~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 355 VALSGDPADIYRTDAAVKEL-FPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSG 423 (545)
T ss_pred EecCCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcC
No 482
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=27.68 E-value=48 Score=39.93 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 53 PPLSPSPRNAPKPAATSTTVAPNPKP 78 (877)
Q Consensus 53 pp~~p~p~~~~~p~~~~~~~~~~~~~ 78 (877)
||--|||+||||-.-+|+.|+|+|+|
T Consensus 5 ppg~ppppppppg~epps~pppPppP 30 (2365)
T COG5178 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30 (2365)
T ss_pred CCCCCcccccCCCCCCCCCCCCccCC
No 483
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.57 E-value=4e+02 Score=22.92 Aligned_cols=81 Identities=12% Similarity=-0.011 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 248 (877)
....++|-.+.+|....+ .....+.-.-+..+...|++++| -........||...|.+|-.. +.|..+++.
T Consensus 19 ~HcH~EA~tIa~wL~~~~---~~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e 89 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG---EMEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALCAW--KLGLASALE 89 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHHHH--HCT-HHHHH
T ss_pred hHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHHHH--hhccHHHHH
Q ss_pred HHHHHHHhCC
Q 002814 249 SVFNSMKRYN 258 (877)
Q Consensus 249 ~~~~~m~~~g 258 (877)
..+.++...|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
No 484
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.23 E-value=9.3e+02 Score=27.06 Aligned_cols=461 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002814 209 VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (877)
Q Consensus 209 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 288 (877)
......+|+.+..+ +.-|+..|...+..+.+.+.+.+.-.+|.+|...... ++..|-.-..-....+.+++.|..+|.
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC
Q 002814 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368 (877)
Q Consensus 289 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 368 (877)
+.++.+.. ....|-...++ .+..+.++..+-...|...+..+ --...|...........=...+..+.
T Consensus 165 rgLR~npd-sp~Lw~eyfrm-----EL~~~~Kl~~rr~~~g~~~~~~~------~eie~ge~~~~~~~~s~~~~~~~~k~ 232 (568)
T KOG2396|consen 165 RGLRFNPD-SPKLWKEYFRM-----ELMYAEKLRNRREELGLDSSDKD------EEIERGELAWINYANSVDIIKGAVKS 232 (568)
T ss_pred HHhhcCCC-ChHHHHHHHHH-----HHHHHHHHHHHHHHhccccchhH------HHHHHHHHHHHhhccchhhhhcchhh
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (877)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 448 (877)
.. .+..-+.....+-.+-..+....+.+-|+.++ .+.|...++-.. .-+...+...-.+
T Consensus 233 ~e-----~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~------------~~laqr~l~i~~----~tdl~~~~~~~~~ 291 (568)
T KOG2396|consen 233 VE-----LSVAEKFDFLKELQKNIIDDLQSKAPDNPLLW------------DDLAQRELEILS----QTDLQHTDNQAKA 291 (568)
T ss_pred cc-----hHHHHHHHHHHHHHHHHHHHHhccCCCCCccH------------HHHHHHHHHHHH----Hhhccchhhhhhc
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY------SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
+.-.-+.+....+|++..+. -++...|+..|..| .+...+..-..+|+...+.+.- ....+..+...+...
T Consensus 292 ~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l-~~~~~~~ys~~~l~~ 368 (568)
T KOG2396|consen 292 VEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLL-SECLYKQYSVLLLCL 368 (568)
T ss_pred hhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHH
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHH
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG-RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (877)
....+|...-..+...++.-+...|..-+.... ...+++--.....-.+..++....+..+.....-..
T Consensus 369 ~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~ds---------- 438 (568)
T KOG2396|consen 369 NTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDS---------- 438 (568)
T ss_pred hccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccc----------
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchh
Q 002814 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVT-FSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680 (877)
Q Consensus 602 ~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~ 680 (877)
-....+.++-.....-..|+.+| =+.++.-+...|-.++|++.|..+....|....
T Consensus 439 -----------------------l~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~ 495 (568)
T KOG2396|consen 439 -----------------------LQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLD 495 (568)
T ss_pred -----------------------hhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHH
Q ss_pred HHHHHhhcc---ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 681 VAHGLLMGY---RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 681 ~~~~l~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
.-...+.-. ...++.-+..+++.|...-. .++..|.-+...-...|+.+-+-.+.-.|+.
T Consensus 496 l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 496 LFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.07 E-value=3.9e+02 Score=25.55 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 385 LDDALNMFSEMKFLGIGL--DRVSYNTVLS-----IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~p--d~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 454 (877)
++.|+.+|+.+.+.--.| -......+|. .|.+.|.+++|.+++++... .++......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
No 486
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.77 E-value=6.8e+02 Score=27.20 Aligned_cols=128 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 339 TLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK------AGRLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (877)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 412 (877)
..+..+.+.+++..|.++|+++..+.+.++...+-..+..+++ .-++++|.+.++.+.......-..+.+.-..
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHH
Q 002814 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY------GKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 413 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~ 467 (877)
...+....-.+...-....... .....++..+.+.+ ...|+++.|...+-+.++
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRRE-AKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHhHHhhcchhhhccchhhh-hcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 487
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=26.65 E-value=5e+02 Score=23.76 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 002814 177 QCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY-----GNTVYAFSALISAYGRSGY-CQEAISV 250 (877)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~-~~~A~~~ 250 (877)
+....+...+..........+.++.-+...+++.-...+++.+..... ..+-..|.+++.+..+... ---+..+
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcC
Q 002814 251 FNSMKRYNLKPNLVTYNAVIDACGKG 276 (877)
Q Consensus 251 ~~~m~~~g~~p~~~~~~~ll~~~~~~ 276 (877)
|+-|++.+.+.+..-|..+|.++.+.
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC
No 488
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=26.40 E-value=6.1e+02 Score=29.91 Aligned_cols=93 Identities=12% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHH---PSSRPHWTSHKVSLT---KPPLSPSPRNAPKPAATSTTVAPNP 76 (877)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~pp~~p~p~~~~~p~~~~~~~~~~~ 76 (877)
++-|.|++.....+..++...+.+.++..++..+ +.++|+...+.++.+ ..++.++|+--.+|...++..++-.
T Consensus 573 ~~~~~Ppp~g~~~~~~P~~~pg~P~~~~~Ppa~p~~~~~ppPgf~PnpPpP~~~Pg~np~~pPpg~~pP~~pPp~~Ppm~ 652 (894)
T KOG0132|consen 573 PPDPAPPPVGRPRPQKPPPRPGAPIPSGEPPAFPGPMWHPPPGFVPNPPPPPLRPGYNPYPPPPGFMPPTSPPPGQPPMG 652 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 002814 77 KPFHSLSPLPSSKSELAPD 95 (877)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ 95 (877)
.++...++.........+.
T Consensus 653 ~pp~~pppp~~p~~~~~Pp 671 (894)
T KOG0132|consen 653 IPPQTPPPPMFPQGFNAPP 671 (894)
T ss_pred CCCCCCCCCCCccCCCCCC
No 489
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=26.27 E-value=1.5e+02 Score=19.63 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCHHHHHHH--HHHHHhcCCcc
Q 002814 648 FSAILNACSRCNSFEDASML--LEELRLFDNQV 678 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~--~~~~~~~~~~~ 678 (877)
+-++...+...|++++|+++ |.-+...++.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
No 490
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.44 E-value=1.9e+02 Score=33.98 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 2 ASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATST 70 (877)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~ 70 (877)
++.+++++++++++.+.++...+.+.+...+|..++.....-.......+++++.+++..+.+......
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (620)
T PRK14948 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594 (620)
T ss_pred CccCCCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCcCcccccCCCcccCCCCCCCCCCCCCCcccCCh
No 491
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=25.31 E-value=3.8e+02 Score=31.21 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHK--VSLTKPPLSPSPRNAPKPAATSTTVAPNPKP 78 (877)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~ 78 (877)
+..++-+|.+.-+|.|-..+....+.+|.|.+.++.++.+|.-.+.+ ...+.-|....+.....|+....++|+...|
T Consensus 961 ~~~~~~~paA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~~~~~~~s~~q~~pP~~g~P 1040 (1106)
T KOG0162|consen 961 YGQNGVSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGASGNGRKPSGPQRPPPPAGRP 1040 (1106)
T ss_pred ccCCCCCccccCCCCCCCCCCCccccCCCCCCcccccccccccCCCCCCccccccCcccCcccccCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCC
Q 002814 79 FHSLSPLPSSKS 90 (877)
Q Consensus 79 ~~~~~~~~~~~~ 90 (877)
.|++++.+...+
T Consensus 1041 ~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 1041 KPPPPAKPPKNP 1052 (1106)
T ss_pred CccCCCCCCCCc
No 492
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.14 E-value=5.1e+02 Score=29.92 Aligned_cols=90 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKD---AVTYNALLGGYGKQGK------YDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
+|+.+|...|++-.+.++++.+.... +-+ ...||..|.-+.+.|. .+.|.+++++..-.| |..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
|+++-...-.-.-..-++.+++.
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
No 493
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.06 E-value=5.4e+02 Score=25.54 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 002814 470 VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYS--ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVT 546 (877)
Q Consensus 470 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 546 (877)
+.++..-+|.|+--|.-...+.+|.+.|..-..-.. ..|..+++ .-|....+.|+.++|++..++.--.-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Q ss_pred HHHHHHHH----hhcCChhhhHHHHHHHh
Q 002814 547 YNSIIDAF----GRSATTECTVDDVERDL 571 (877)
Q Consensus 547 ~~~li~~~----~~~g~~~~a~~~~~~~l 571 (877)
+--|...- .+.|..++|++.....+
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHc
No 494
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.81 E-value=1e+03 Score=26.81 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 500 (877)
+-...+-..+...|+..+......++..- .|+...|+.+++++...+ ....++..+...+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S--~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l---------------- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKKG--DGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI---------------- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh----------------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 501 KQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (877)
Q Consensus 501 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (877)
|+. +...+..++.++...+....|+.++++|.+.|..|..+....+
T Consensus 244 ---g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 244 ---GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred ---CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
No 495
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.72 E-value=1.6e+02 Score=30.52 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
++....|+..|..-.+.|++++|+++++++.+.|..---.+|-.-++.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~~ 301 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVKG 301 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhhc
No 496
>PRK10941 hypothetical protein; Provisional
Probab=24.66 E-value=7.8e+02 Score=25.30 Aligned_cols=84 Identities=17% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 002814 193 GKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMK-RYNLKPNLVTYNAVID 271 (877)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~ 271 (877)
.+..+.+-.+|.+.++++.|.++.+.++...+. +..-+.--.-.|.+.|.+..|..-++... ...-.|+.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q ss_pred HHHcCC
Q 002814 272 ACGKGG 277 (877)
Q Consensus 272 ~~~~~g 277 (877)
.+....
T Consensus 260 ~l~~~~ 265 (269)
T PRK10941 260 SIEQKQ 265 (269)
T ss_pred HHhhcC
No 497
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=7.4e+02 Score=24.97 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHH--------ccccCCChHHH-------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVK--------REERKNDQGKL-------ASAMISILGRLGKVDLAKNIFETALNEGYGNT 227 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 227 (877)
.+.+.+.|++.+|...|..++. ..+..+.+..+ +.....++...|++-++++--.+++..... |
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~-n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-N 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-h
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNL 259 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 259 (877)
+.+|..-..+.+..=+.++|..-|....+...
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
No 498
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.37 E-value=9.5e+02 Score=26.19 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCCCHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE---------GYGNTVY 229 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------g~~~~~~ 229 (877)
+..+...|...|+++.|++.|.++..--.........+..++..-.-.|+|.....+-.++... .+.+-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCCCCHHHH
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLK------PNLVTYNAVIDACGKGGVDFKHVVEIFDDML-RNGVQPDRITF 302 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~-~~g~~p~~~t~ 302 (877)
.+..|.....+ ++..|...|-......+. |..++....+.+++-.+ +-+--+.+...-. +.=.+......
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfd-r~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFD-RQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCC-HHHHHHHHHcchhhhhHHhcChHHH
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHR-----GIDQDIFTYNTLLD 342 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~ 342 (877)
..|.+.|. +++....++++++... -+.|.+.+...+|.
T Consensus 310 ~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 499
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.24 E-value=4.4e+02 Score=26.42 Aligned_cols=90 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHH------------------hcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc
Q 002814 652 LNACSRCNSFEDASMLLEELR------------------LFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA 712 (877)
Q Consensus 652 l~a~~~~g~~~eA~~~~~~~~------------------~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~ 712 (877)
++-+.+.|+++||...|.+++ +++......+.|+...+ ..|++-++++--.+.+..+| .|
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~-~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-GN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-ch
Q ss_pred hhHHHHHHHHHHhcCchhhHHHHHHHhhhh
Q 002814 713 SAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 713 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
...|.--+.+....=+.++|..-+...++.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
No 500
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=23.95 E-value=7.6e+02 Score=27.53 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002814 4 TPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPFHSLS 83 (877)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~p~p~~~~~p~~~~~~~~~~~~~~~~~~ 83 (877)
|.++--|.-++.+.-|..|-.+++|--++.+..|..+.+......+-.+.-|--|-.+-.+..+.+|..+.+|..+.+..
T Consensus 573 p~lSK~Pe~PK~Pk~PKdPksPK~PK~Prspq~P~~PkSPk~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkRPEsPK 652 (943)
T PTZ00449 573 PTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK 652 (943)
T ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCC
Q 002814 84 PLPSSKSELAPD 95 (877)
Q Consensus 84 ~~~~~~~~~~~~ 95 (877)
...+++...++.
T Consensus 653 iPesPK~PkSPK 664 (943)
T PTZ00449 653 IIKSPKPPKSPK 664 (943)
T ss_pred CCCCCCCCCCCC
Done!