Query 002814
Match_columns 877
No_of_seqs 920 out of 4356
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 02:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-39 1.2E-43 378.2 42.0 492 155-724 83-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.1E-37 1.4E-41 360.6 39.3 473 191-743 82-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.4E-31 254.3 47.0 382 162-558 5-387 (388)
4 4g26_A Pentatricopeptide repea 100.0 4E-29 1.4E-33 280.6 25.0 186 372-557 29-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-28 3.9E-33 276.9 25.9 205 318-522 9-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-25 6.2E-30 246.3 44.7 369 199-578 5-373 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.1E-22 1E-26 229.2 38.6 383 157-577 7-405 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.8E-22 6.3E-27 231.1 35.9 435 132-578 16-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.2E-21 1.4E-25 215.9 42.6 377 149-563 19-444 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 3.6E-21 1.2E-25 216.4 40.5 304 131-468 35-358 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.9E-21 1.3E-25 221.5 39.7 457 156-681 25-498 (537)
12 3fp2_A TPR repeat-containing p 99.9 6.1E-21 2.1E-25 219.8 40.6 427 130-578 33-496 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.2E-22 180.8 41.0 330 156-521 3-352 (359)
14 2xm6_A Protein corresponding t 99.8 2.8E-16 9.5E-21 178.4 52.7 353 155-540 38-434 (490)
15 3ieg_A DNAJ homolog subfamily 99.8 2.4E-17 8.2E-22 178.5 41.9 331 193-558 3-354 (359)
16 2xm6_A Protein corresponding t 99.8 6.5E-16 2.2E-20 175.4 54.6 364 176-575 27-434 (490)
17 2ooe_A Cleavage stimulation fa 99.8 3.1E-16 1.1E-20 179.9 44.6 415 152-577 9-496 (530)
18 1xi4_A Clathrin heavy chain; a 99.8 4.7E-15 1.6E-19 175.2 53.4 362 152-573 981-1345(1630)
19 2ooe_A Cleavage stimulation fa 99.8 5.3E-16 1.8E-20 178.0 43.8 433 179-676 2-494 (530)
20 3hym_B Cell division cycle pro 99.8 6.4E-17 2.2E-21 173.0 32.6 286 154-449 20-314 (330)
21 3hym_B Cell division cycle pro 99.8 8E-17 2.7E-21 172.3 32.0 290 262-560 21-321 (330)
22 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.5E-19 171.4 51.1 386 193-668 985-1378(1630)
23 4g1t_A Interferon-induced prot 99.8 2.1E-16 7.3E-21 178.6 33.2 109 625-743 349-460 (472)
24 1fch_A Peroxisomal targeting s 99.8 3.7E-17 1.3E-21 178.1 24.6 305 168-498 37-354 (368)
25 1fch_A Peroxisomal targeting s 99.8 6.7E-17 2.3E-21 176.0 26.0 308 241-575 38-361 (368)
26 1b89_A Protein (clathrin heavy 99.7 5.1E-17 1.7E-21 173.3 20.8 283 203-530 13-303 (449)
27 4g1t_A Interferon-induced prot 99.7 2.5E-15 8.4E-20 169.8 34.8 386 227-678 50-463 (472)
28 3cv0_A Peroxisome targeting si 99.7 4.1E-16 1.4E-20 166.4 26.3 270 303-578 25-320 (327)
29 4eqf_A PEX5-related protein; a 99.7 2.3E-16 8E-21 171.6 23.6 265 301-572 67-355 (365)
30 4eqf_A PEX5-related protein; a 99.7 3.8E-16 1.3E-20 169.9 24.6 273 158-464 67-352 (365)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.6E-22 189.7 11.6 152 403-559 126-287 (1134)
32 3spa_A Mtrpol, DNA-directed RN 99.7 2.1E-17 7.1E-22 189.4 11.4 121 368-488 126-250 (1134)
33 3cv0_A Peroxisome targeting si 99.7 2.9E-15 9.9E-20 159.8 27.6 278 156-465 21-312 (327)
34 1b89_A Protein (clathrin heavy 99.7 4.3E-17 1.5E-21 173.9 12.4 287 346-739 15-308 (449)
35 3mkr_A Coatomer subunit epsilo 99.7 8.5E-15 2.9E-19 153.2 27.8 253 237-504 8-265 (291)
36 3mkr_A Coatomer subunit epsilo 99.7 7.4E-15 2.5E-19 153.6 25.5 219 234-467 40-263 (291)
37 3uq3_A Heat shock protein STI1 99.6 2.1E-13 7.1E-18 139.7 26.4 224 300-537 6-235 (258)
38 3uq3_A Heat shock protein STI1 99.6 3.9E-13 1.3E-17 137.6 25.2 225 228-502 5-235 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-13 6.5E-18 152.7 23.0 374 162-572 9-420 (452)
40 2h6f_A Protein farnesyltransfe 99.6 8.4E-13 2.9E-17 142.8 27.1 252 405-725 98-365 (382)
41 2pl2_A Hypothetical conserved 99.6 3.5E-13 1.2E-17 134.4 22.3 193 336-534 7-210 (217)
42 1ouv_A Conserved hypothetical 99.6 9.5E-12 3.3E-16 128.9 34.2 226 334-577 6-255 (273)
43 1ouv_A Conserved hypothetical 99.6 8.1E-12 2.8E-16 129.4 33.5 224 298-539 5-252 (273)
44 2pl2_A Hypothetical conserved 99.5 3.9E-13 1.3E-17 134.0 21.7 196 156-360 5-211 (217)
45 2h6f_A Protein farnesyltransfe 99.5 7.5E-13 2.6E-17 143.2 25.2 248 156-414 97-363 (382)
46 4e6h_A MRNA 3'-END-processing 99.5 1.2E-10 4.3E-15 134.2 44.9 430 141-578 51-575 (679)
47 3e4b_A ALGK; tetratricopeptide 99.5 8.5E-13 2.9E-17 147.4 24.9 122 406-536 178-314 (452)
48 2ho1_A Type 4 fimbrial biogene 99.5 3.5E-12 1.2E-16 130.2 26.8 203 371-577 39-242 (252)
49 3u4t_A TPR repeat-containing p 99.5 1.6E-12 5.3E-17 134.6 24.1 238 338-579 7-256 (272)
50 3u4t_A TPR repeat-containing p 99.5 3.4E-12 1.2E-16 132.0 24.9 236 156-398 3-250 (272)
51 2ho1_A Type 4 fimbrial biogene 99.5 6E-12 2E-16 128.5 26.5 200 335-538 38-238 (252)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.6E-13 2.3E-17 137.6 19.5 250 167-427 16-269 (275)
53 2vq2_A PILW, putative fimbrial 99.5 8.7E-12 3E-16 124.5 27.0 201 334-537 8-210 (225)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.4E-13 2.5E-17 137.2 19.1 218 279-502 20-243 (275)
55 2vq2_A PILW, putative fimbrial 99.5 9.9E-12 3.4E-16 124.1 26.2 200 300-502 9-210 (225)
56 2q7f_A YRRB protein; TPR, prot 99.5 2.8E-12 9.5E-17 130.0 21.9 199 334-537 23-221 (243)
57 2q7f_A YRRB protein; TPR, prot 99.5 3.4E-12 1.2E-16 129.4 22.3 207 368-579 22-228 (243)
58 4e6h_A MRNA 3'-END-processing 99.5 5.8E-10 2E-14 128.6 42.7 375 173-577 49-503 (679)
59 3sf4_A G-protein-signaling mod 99.4 2.9E-12 9.9E-17 141.0 20.6 304 227-563 8-366 (406)
60 4a1s_A PINS, partner of inscut 99.4 6.2E-12 2.1E-16 138.9 21.2 270 306-576 55-375 (411)
61 3sf4_A G-protein-signaling mod 99.4 2.5E-12 8.4E-17 141.6 17.3 304 191-525 7-363 (406)
62 4a1s_A PINS, partner of inscut 99.4 6E-12 2E-16 139.0 19.6 98 159-256 51-154 (411)
63 2ond_A Cleavage stimulation fa 99.4 2.3E-10 8E-15 120.7 28.8 189 386-577 81-274 (308)
64 3ro2_A PINS homolog, G-protein 99.4 1.7E-11 5.9E-16 130.6 19.4 205 371-575 85-334 (338)
65 2ond_A Cleavage stimulation fa 99.4 5.4E-10 1.9E-14 117.8 30.7 218 173-398 33-270 (308)
66 3ro2_A PINS homolog, G-protein 99.4 2E-11 6.7E-16 130.1 19.7 94 161-254 10-109 (338)
67 3vtx_A MAMA; tetratricopeptide 99.3 1.8E-10 6E-15 111.2 23.8 163 370-536 6-168 (184)
68 3vtx_A MAMA; tetratricopeptide 99.3 1.4E-10 4.7E-15 112.0 23.0 172 403-578 4-175 (184)
69 3nf1_A KLC 1, kinesin light ch 99.3 7.8E-12 2.7E-16 131.9 13.9 243 439-742 27-307 (311)
70 4abn_A Tetratricopeptide repea 99.3 1.1E-10 3.7E-15 131.1 23.3 225 280-536 84-319 (474)
71 4abn_A Tetratricopeptide repea 99.3 5.2E-11 1.8E-15 133.7 20.6 217 172-430 84-318 (474)
72 3ulq_A Response regulator aspa 99.3 4.2E-11 1.4E-15 130.9 18.8 162 305-466 109-291 (383)
73 3ulq_A Response regulator aspa 99.3 2.4E-10 8.1E-15 124.9 23.7 228 167-395 23-290 (383)
74 3nf1_A KLC 1, kinesin light ch 99.3 2.5E-11 8.4E-16 128.0 14.9 133 158-291 29-180 (311)
75 1hz4_A MALT regulatory protein 99.2 6E-09 2.1E-13 113.1 28.3 269 162-431 20-320 (373)
76 1hz4_A MALT regulatory protein 99.2 4.5E-09 1.5E-13 114.1 27.3 269 308-576 23-325 (373)
77 3as5_A MAMA; tetratricopeptide 99.2 2.7E-09 9.2E-14 102.4 22.8 163 335-501 9-171 (186)
78 3as5_A MAMA; tetratricopeptide 99.2 2.4E-09 8.1E-14 102.8 21.0 168 406-577 10-177 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.2 8.6E-10 2.9E-14 128.8 20.3 165 156-327 9-173 (723)
80 3q15_A PSP28, response regulat 99.2 3.8E-09 1.3E-13 115.0 24.3 128 371-502 224-364 (378)
81 4gyw_A UDP-N-acetylglucosamine 99.1 1.3E-09 4.6E-14 127.2 21.3 168 190-362 6-173 (723)
82 4i17_A Hypothetical protein; T 99.1 7.9E-09 2.7E-13 103.4 24.2 214 474-723 7-224 (228)
83 4i17_A Hypothetical protein; T 99.1 8.4E-09 2.9E-13 103.2 21.7 201 367-579 5-215 (228)
84 3q15_A PSP28, response regulat 99.1 8.3E-09 2.8E-13 112.3 23.1 231 162-396 107-363 (378)
85 3edt_B KLC 2, kinesin light ch 99.1 2.2E-09 7.4E-14 111.1 16.9 230 487-741 14-280 (283)
86 1qqe_A Vesicular transport pro 99.0 5.4E-09 1.8E-13 109.2 17.2 171 405-577 78-273 (292)
87 3edt_B KLC 2, kinesin light ch 99.0 2.9E-09 9.8E-14 110.1 14.3 156 311-466 13-196 (283)
88 3mv2_B Coatomer subunit epsilo 99.0 2E-07 6.8E-12 95.4 26.1 272 344-707 23-305 (310)
89 3dra_A Protein farnesyltransfe 99.0 3.8E-07 1.3E-11 94.3 28.4 223 167-397 43-286 (306)
90 1qqe_A Vesicular transport pro 98.9 4.5E-08 1.5E-12 102.1 21.1 132 230-362 79-227 (292)
91 3mv2_B Coatomer subunit epsilo 98.9 4.2E-07 1.5E-11 92.9 27.0 247 308-578 22-287 (310)
92 3urz_A Uncharacterized protein 98.9 3.8E-08 1.3E-12 96.8 17.8 173 157-338 5-194 (208)
93 2uy1_A Cleavage stimulation fa 98.9 1.7E-06 5.7E-11 96.9 32.6 205 351-573 196-413 (493)
94 3qky_A Outer membrane assembly 98.9 5.5E-08 1.9E-12 99.5 18.6 216 153-388 12-251 (261)
95 2fo7_A Synthetic consensus TPR 98.9 1.2E-07 4E-12 85.1 18.3 95 440-536 36-130 (136)
96 2pzi_A Probable serine/threoni 98.9 2.2E-08 7.5E-13 117.6 16.4 130 228-362 433-562 (681)
97 2fo7_A Synthetic consensus TPR 98.9 1E-07 3.5E-12 85.6 17.3 127 373-502 5-131 (136)
98 3qky_A Outer membrane assembly 98.8 8.6E-08 3E-12 98.1 18.3 210 332-563 13-251 (261)
99 3urz_A Uncharacterized protein 98.8 1.4E-07 4.6E-12 92.8 18.7 134 410-549 60-195 (208)
100 3dra_A Protein farnesyltransfe 98.8 1.2E-06 4.2E-11 90.5 25.7 220 207-432 47-286 (306)
101 3rjv_A Putative SEL1 repeat pr 98.8 4.2E-07 1.4E-11 89.5 21.0 163 368-539 17-198 (212)
102 2uy1_A Cleavage stimulation fa 98.8 7E-06 2.4E-10 91.8 33.0 344 170-537 28-412 (493)
103 3rjv_A Putative SEL1 repeat pr 98.8 4E-07 1.4E-11 89.7 20.3 175 318-504 5-198 (212)
104 3q7a_A Farnesyltransferase alp 98.7 4.6E-06 1.6E-10 87.1 27.6 222 167-396 65-329 (349)
105 2yhc_A BAMD, UPF0169 lipoprote 98.7 5.2E-07 1.8E-11 89.8 20.0 188 156-364 4-214 (225)
106 2pzi_A Probable serine/threoni 98.7 8.8E-08 3E-12 112.4 16.5 177 380-563 402-587 (681)
107 4ga2_A E3 SUMO-protein ligase 98.7 4.2E-08 1.4E-12 90.8 10.7 143 165-314 6-149 (150)
108 2r5s_A Uncharacterized protein 98.7 7.9E-08 2.7E-12 91.6 13.0 77 283-360 93-170 (176)
109 4ga2_A E3 SUMO-protein ligase 98.7 2.3E-08 7.7E-13 92.6 8.3 100 625-727 46-148 (150)
110 3qou_A Protein YBBN; thioredox 98.7 5.7E-07 2E-11 93.3 18.6 165 298-467 116-283 (287)
111 2r5s_A Uncharacterized protein 98.7 1.7E-07 5.8E-12 89.3 13.4 160 409-572 11-172 (176)
112 3qou_A Protein YBBN; thioredox 98.7 3.3E-07 1.1E-11 95.2 16.5 166 401-572 114-283 (287)
113 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.3E-06 4.5E-11 86.9 20.2 66 333-398 3-70 (225)
114 3dss_A Geranylgeranyl transfer 98.6 1.1E-05 3.9E-10 83.8 26.5 246 416-720 41-316 (331)
115 2vsy_A XCC0866; transferase, g 98.6 5.1E-07 1.7E-11 104.0 18.3 154 169-329 2-158 (568)
116 3gyz_A Chaperone protein IPGC; 98.6 1.6E-07 5.4E-12 86.6 10.7 102 641-743 31-134 (151)
117 2vsy_A XCC0866; transferase, g 98.6 8.7E-07 3E-11 102.0 19.5 152 348-503 3-157 (568)
118 2ifu_A Gamma-SNAP; membrane fu 98.6 5.6E-07 1.9E-11 94.5 15.9 95 301-396 118-222 (307)
119 2c2l_A CHIP, carboxy terminus 98.6 1.7E-06 5.7E-11 89.4 18.5 103 473-577 3-105 (281)
120 4gco_A Protein STI-1; structur 98.6 2.8E-07 9.6E-12 82.1 10.8 102 641-743 8-111 (126)
121 3q7a_A Farnesyltransferase alp 98.6 2.8E-05 9.4E-10 81.2 26.7 169 281-454 71-257 (349)
122 3u3w_A Transcriptional activat 98.5 1E-05 3.6E-10 84.0 22.6 128 410-537 121-265 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.5 6.9E-06 2.4E-10 80.6 20.0 127 336-468 8-150 (213)
124 3u3w_A Transcriptional activat 98.5 1.1E-05 3.9E-10 83.7 22.6 166 410-575 81-268 (293)
125 4gco_A Protein STI-1; structur 98.5 2.5E-06 8.4E-11 75.9 14.7 108 157-269 14-121 (126)
126 3dss_A Geranylgeranyl transfer 98.5 5.3E-05 1.8E-09 78.7 26.5 177 163-347 36-240 (331)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.8E-06 2E-10 81.1 18.4 127 372-503 9-150 (213)
128 2ifu_A Gamma-SNAP; membrane fu 98.5 1.9E-06 6.5E-11 90.4 15.6 130 230-361 78-222 (307)
129 2vgx_A Chaperone SYCD; alterna 98.5 8.9E-07 3E-11 81.4 11.0 109 632-743 9-119 (148)
130 2qfc_A PLCR protein; TPR, HTH, 98.4 2.1E-05 7.3E-10 81.6 22.0 63 511-573 198-266 (293)
131 1a17_A Serine/threonine protei 98.4 9.7E-06 3.3E-10 75.6 17.2 92 409-502 18-109 (166)
132 1a17_A Serine/threonine protei 98.4 1E-05 3.4E-10 75.5 17.1 128 370-500 14-143 (166)
133 2qfc_A PLCR protein; TPR, HTH, 98.4 2.1E-05 7.3E-10 81.6 21.2 169 368-537 74-265 (293)
134 4f3v_A ESX-1 secretion system 98.4 6.7E-06 2.3E-10 83.0 16.4 189 168-363 18-237 (282)
135 4f3v_A ESX-1 secretion system 98.4 2.2E-05 7.6E-10 79.2 19.8 152 311-466 18-198 (282)
136 3gyz_A Chaperone protein IPGC; 98.4 2.5E-06 8.5E-11 78.5 11.7 96 157-256 37-132 (151)
137 1p5q_A FKBP52, FK506-binding p 98.4 8.5E-07 2.9E-11 94.3 9.8 151 170-326 127-292 (336)
138 2xcb_A PCRH, regulatory protei 98.4 1.1E-06 3.8E-11 80.1 9.2 109 632-743 6-116 (142)
139 2c2l_A CHIP, carboxy terminus 98.4 3.4E-06 1.2E-10 87.1 14.0 95 195-292 6-100 (281)
140 1na0_A Designed protein CTPR3; 98.3 1.3E-05 4.5E-10 70.3 15.7 15 449-463 87-101 (125)
141 1na0_A Designed protein CTPR3; 98.3 1.8E-05 6E-10 69.5 16.3 114 405-521 10-123 (125)
142 3gw4_A Uncharacterized protein 98.3 4.5E-06 1.5E-10 81.1 13.0 27 548-574 151-177 (203)
143 3upv_A Heat shock protein STI1 98.3 3.4E-06 1.2E-10 74.9 11.0 98 645-743 4-102 (126)
144 3gw4_A Uncharacterized protein 98.3 4.3E-06 1.5E-10 81.2 12.7 157 167-327 3-175 (203)
145 2e2e_A Formate-dependent nitri 98.3 3.3E-06 1.1E-10 80.2 10.9 122 167-294 21-145 (177)
146 2vyi_A SGTA protein; chaperone 98.3 2.1E-05 7.3E-10 69.6 15.6 61 475-536 47-107 (131)
147 2vyi_A SGTA protein; chaperone 98.3 1.5E-05 5.2E-10 70.6 14.2 59 407-466 49-107 (131)
148 3sz7_A HSC70 cochaperone (SGT) 98.3 4.5E-06 1.5E-10 78.2 11.0 99 644-743 10-109 (164)
149 2e2e_A Formate-dependent nitri 98.3 6.3E-06 2.2E-10 78.2 12.2 120 416-538 22-144 (177)
150 4gcn_A Protein STI-1; structur 98.2 3.3E-06 1.1E-10 75.2 9.4 97 646-742 9-112 (127)
151 2lni_A Stress-induced-phosphop 98.2 1.4E-05 4.7E-10 71.3 13.6 93 372-466 19-111 (133)
152 1hxi_A PEX5, peroxisome target 98.2 4E-06 1.4E-10 74.0 9.7 94 648-742 20-114 (121)
153 2lni_A Stress-induced-phosphop 98.2 1.5E-05 5.1E-10 71.0 13.7 118 403-523 15-132 (133)
154 1p5q_A FKBP52, FK506-binding p 98.2 1.5E-05 5.3E-10 84.5 15.8 146 298-466 146-292 (336)
155 3upv_A Heat shock protein STI1 98.2 2.9E-05 9.8E-10 68.8 14.6 97 157-257 5-101 (126)
156 3q49_B STIP1 homology and U bo 98.2 1E-05 3.6E-10 72.7 11.9 100 643-743 7-107 (137)
157 2vgx_A Chaperone SYCD; alterna 98.2 6E-06 2.1E-10 75.8 10.3 89 162-254 27-115 (148)
158 1dce_A Protein (RAB geranylger 98.2 5.1E-05 1.7E-09 86.2 19.8 103 626-731 125-244 (567)
159 2fbn_A 70 kDa peptidylprolyl i 98.2 3.8E-06 1.3E-10 81.6 8.5 27 371-397 40-66 (198)
160 2kck_A TPR repeat; tetratricop 98.1 9.2E-06 3.1E-10 69.8 9.8 98 644-742 5-106 (112)
161 1elw_A TPR1-domain of HOP; HOP 98.1 8E-05 2.7E-09 64.3 16.0 98 157-258 5-102 (118)
162 4gcn_A Protein STI-1; structur 98.1 4.9E-05 1.7E-09 67.5 13.8 104 441-547 10-119 (127)
163 2xcb_A PCRH, regulatory protei 98.1 2.5E-05 8.4E-10 71.0 12.1 96 157-256 19-114 (142)
164 2hr2_A Hypothetical protein; a 98.1 1.7E-05 5.7E-10 72.2 10.1 95 648-743 14-132 (159)
165 3sz7_A HSC70 cochaperone (SGT) 98.1 5.2E-05 1.8E-09 70.8 14.0 98 156-257 11-108 (164)
166 1elw_A TPR1-domain of HOP; HOP 98.1 0.00014 4.8E-09 62.7 16.0 94 372-467 7-100 (118)
167 1hxi_A PEX5, peroxisome target 98.0 2.9E-05 1E-09 68.3 11.3 96 158-257 19-114 (121)
168 2fbn_A 70 kDa peptidylprolyl i 98.0 6.2E-05 2.1E-09 72.8 14.6 128 336-465 40-183 (198)
169 2kck_A TPR repeat; tetratricop 98.0 7.2E-05 2.5E-09 64.0 12.9 99 156-258 6-107 (112)
170 3q49_B STIP1 homology and U bo 98.0 8.7E-05 3E-09 66.5 13.9 98 155-256 8-105 (137)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.2E-06 2.4E-10 91.2 7.6 90 645-735 317-407 (457)
172 2dba_A Smooth muscle cell asso 98.0 0.00018 6.2E-09 65.2 15.6 111 156-271 28-141 (148)
173 1elr_A TPR2A-domain of HOP; HO 98.0 7.8E-05 2.7E-09 65.9 12.7 110 441-553 6-121 (131)
174 2xev_A YBGF; tetratricopeptide 97.9 0.00025 8.7E-09 62.6 15.6 98 159-257 5-105 (129)
175 3rkv_A Putative peptidylprolyl 97.9 3.2E-05 1.1E-09 72.0 10.0 96 647-743 13-127 (162)
176 1elr_A TPR2A-domain of HOP; HO 97.9 7.3E-05 2.5E-09 66.1 11.9 57 373-430 8-64 (131)
177 2dba_A Smooth muscle cell asso 97.9 0.00026 9E-09 64.1 15.6 23 408-430 103-125 (148)
178 4b4t_Q 26S proteasome regulato 97.9 0.00025 8.6E-09 78.0 18.1 165 372-536 58-243 (434)
179 3rkv_A Putative peptidylprolyl 97.9 0.00014 4.9E-09 67.5 13.4 101 156-257 11-126 (162)
180 4b4t_Q 26S proteasome regulato 97.9 0.00038 1.3E-08 76.6 19.0 119 279-397 110-244 (434)
181 3k9i_A BH0479 protein; putativ 97.9 1.2E-05 4.2E-10 70.2 5.4 83 659-742 4-90 (117)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 1.8E-05 6.2E-10 87.9 7.9 117 171-292 249-379 (457)
183 1dce_A Protein (RAB geranylger 97.8 0.00034 1.2E-08 79.4 18.2 177 166-349 38-241 (567)
184 1wao_1 Serine/threonine protei 97.8 3E-05 1E-09 86.5 9.4 112 623-737 19-134 (477)
185 2hr2_A Hypothetical protein; a 97.8 0.00019 6.6E-09 65.2 12.9 99 157-256 12-130 (159)
186 3ro3_A PINS homolog, G-protein 97.8 7.9E-05 2.7E-09 68.7 10.7 99 476-574 51-159 (164)
187 2xev_A YBGF; tetratricopeptide 97.8 0.00011 3.6E-09 65.1 10.9 94 649-743 6-106 (129)
188 3k9i_A BH0479 protein; putativ 97.8 3.8E-05 1.3E-09 67.0 7.6 89 168-257 2-90 (117)
189 3ro3_A PINS homolog, G-protein 97.8 0.00014 4.6E-09 67.0 11.2 97 441-537 51-157 (164)
190 1zu2_A Mitochondrial import re 97.8 6.8E-05 2.3E-09 68.0 8.4 88 624-714 16-126 (158)
191 1wao_1 Serine/threonine protei 97.7 7.1E-05 2.4E-09 83.4 9.2 87 166-256 16-102 (477)
192 1ihg_A Cyclophilin 40; ppiase 97.7 0.00032 1.1E-08 75.2 14.0 98 158-256 225-335 (370)
193 2l6j_A TPR repeat-containing p 97.6 0.00011 3.9E-09 62.8 7.7 90 644-734 3-99 (111)
194 3n71_A Histone lysine methyltr 97.6 0.00026 9E-09 78.3 12.4 140 518-743 318-465 (490)
195 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00021 7E-09 75.8 10.7 147 158-328 181-328 (338)
196 1ihg_A Cyclophilin 40; ppiase 97.6 0.00055 1.9E-08 73.3 14.2 62 405-467 274-335 (370)
197 1klx_A Cysteine rich protein B 97.6 0.0019 6.4E-08 58.0 15.5 110 419-539 10-127 (138)
198 2if4_A ATFKBP42; FKBP-like, al 97.6 7E-05 2.4E-09 79.4 6.7 115 624-741 193-327 (338)
199 2kat_A Uncharacterized protein 97.6 0.00014 4.9E-09 63.0 7.4 79 663-742 3-82 (115)
200 1klx_A Cysteine rich protein B 97.5 0.00089 3E-08 60.2 12.4 111 383-504 9-127 (138)
201 1zu2_A Mitochondrial import re 97.5 0.00017 5.9E-09 65.3 7.4 100 167-272 13-133 (158)
202 1na3_A Designed protein CTPR2; 97.5 0.00041 1.4E-08 56.7 8.9 82 645-727 9-91 (91)
203 3n71_A Histone lysine methyltr 97.4 0.00055 1.9E-08 75.7 10.8 91 165-255 318-420 (490)
204 2l6j_A TPR repeat-containing p 97.3 0.00059 2E-08 58.2 8.0 91 473-566 3-100 (111)
205 3ma5_A Tetratricopeptide repea 97.2 0.00068 2.3E-08 56.9 7.0 53 690-743 19-71 (100)
206 2kat_A Uncharacterized protein 97.2 0.0016 5.3E-08 56.2 9.5 79 174-256 3-81 (115)
207 1na3_A Designed protein CTPR2; 97.2 0.0037 1.3E-07 50.7 11.1 79 158-240 11-89 (91)
208 3ly7_A Transcriptional activat 97.1 0.015 5.2E-07 60.4 16.8 49 152-203 190-243 (372)
209 3fau_A NEDD4-binding protein 2 96.9 0.0012 4.1E-08 52.7 5.5 78 753-834 2-79 (82)
210 3u64_A Protein TP_0956; tetrat 96.8 0.068 2.3E-06 53.2 17.7 106 624-739 177-295 (301)
211 3qww_A SET and MYND domain-con 96.7 0.0045 1.5E-07 67.2 10.1 91 625-741 313-410 (433)
212 3ma5_A Tetratricopeptide repea 96.7 0.0068 2.3E-07 50.6 8.8 59 195-254 9-67 (100)
213 3qww_A SET and MYND domain-con 96.5 0.007 2.4E-07 65.7 9.5 89 168-256 310-410 (433)
214 3mkq_A Coatomer beta'-subunit; 96.4 0.17 5.8E-06 60.3 22.4 102 303-431 633-734 (814)
215 2d9i_A NEDD4-binding protein 2 96.3 0.013 4.3E-07 48.3 7.8 78 752-833 9-86 (96)
216 3qwp_A SET and MYND domain-con 96.3 0.014 4.7E-07 63.5 10.4 93 163-255 294-398 (429)
217 2kc7_A BFR218_protein; tetratr 96.3 0.0092 3.1E-07 49.4 7.2 59 163-224 7-66 (99)
218 2kc7_A BFR218_protein; tetratr 96.2 0.017 5.8E-07 47.7 8.4 58 652-709 7-66 (99)
219 3mkq_A Coatomer beta'-subunit; 96.1 0.064 2.2E-06 64.0 16.1 45 415-465 663-707 (814)
220 3ly7_A Transcriptional activat 96.0 0.08 2.7E-06 55.1 13.7 70 473-546 276-345 (372)
221 1pc2_A Mitochondria fission pr 96.0 0.042 1.4E-06 49.1 10.0 84 626-710 14-103 (152)
222 2vkc_A NEDD4-binding protein 2 95.9 0.047 1.6E-06 48.0 10.0 79 751-833 53-131 (135)
223 3qwp_A SET and MYND domain-con 95.7 0.084 2.9E-06 57.3 13.2 89 448-536 296-398 (429)
224 1pc2_A Mitochondria fission pr 95.4 0.043 1.5E-06 49.1 8.0 84 660-743 13-101 (152)
225 2v5f_A Prolyl 4-hydroxylase su 95.4 0.12 4.1E-06 43.2 10.4 70 155-224 4-77 (104)
226 3bee_A Putative YFRE protein; 95.2 0.13 4.4E-06 42.0 9.7 65 192-257 5-72 (93)
227 3bee_A Putative YFRE protein; 95.1 0.1 3.5E-06 42.6 8.7 66 644-709 5-74 (93)
228 2v5f_A Prolyl 4-hydroxylase su 94.9 0.16 5.3E-06 42.5 9.8 70 508-577 4-79 (104)
229 3mkq_B Coatomer subunit alpha; 94.8 1.2 4.2E-05 40.7 15.7 45 311-361 17-61 (177)
230 3u64_A Protein TP_0956; tetrat 94.7 0.16 5.5E-06 50.6 10.5 96 172-268 179-282 (301)
231 3mkq_B Coatomer subunit alpha; 94.3 0.72 2.5E-05 42.2 13.1 45 345-395 16-60 (177)
232 1wy6_A Hypothetical protein ST 94.0 2.7 9.3E-05 36.1 15.6 138 311-470 19-156 (172)
233 4h7y_A Dual specificity protei 93.9 1.2 4.2E-05 39.2 12.8 118 152-272 9-137 (161)
234 1wy6_A Hypothetical protein ST 92.7 2.7 9.3E-05 36.1 12.7 63 301-364 93-155 (172)
235 1nzn_A CGI-135 protein, fissio 92.4 0.36 1.2E-05 41.4 7.3 67 643-709 33-105 (126)
236 4ady_A RPN2, 26S proteasome re 92.3 20 0.00067 42.2 23.9 310 237-560 383-722 (963)
237 4b4t_P 26S proteasome regulato 92.0 15 0.00053 39.5 26.0 94 479-572 142-246 (445)
238 2wpv_A GET4, UPF0363 protein Y 92.0 11 0.00039 38.0 19.9 167 337-537 36-216 (312)
239 4h7y_A Dual specificity protei 91.5 2.8 9.4E-05 37.0 11.9 113 436-551 10-135 (161)
240 1nzn_A CGI-135 protein, fissio 91.5 1.1 3.8E-05 38.4 9.4 80 662-741 18-102 (126)
241 3lpz_A GET4 (YOR164C homolog); 90.5 17 0.00057 37.1 22.4 167 337-537 38-215 (336)
242 4ady_A RPN2, 26S proteasome re 90.2 34 0.0012 40.2 28.4 256 307-572 382-657 (963)
243 1y8m_A FIS1; mitochondria, unk 89.1 1.6 5.6E-05 38.0 8.4 45 696-740 60-104 (144)
244 2zqe_A MUTS2 protein; alpha/be 87.5 1.1 3.7E-05 35.3 5.8 63 753-828 6-70 (83)
245 3qd7_X Uncharacterized protein 87.4 0.69 2.4E-05 40.4 5.1 60 753-819 49-108 (137)
246 4gns_B Protein CSD3, chitin bi 87.0 3 0.0001 48.0 11.4 130 231-361 251-398 (754)
247 3lvg_A Clathrin heavy chain 1; 85.9 0.02 6.9E-07 60.7 -6.4 376 154-565 81-533 (624)
248 4gns_B Protein CSD3, chitin bi 85.8 7 0.00024 45.0 13.7 131 194-326 249-398 (754)
249 2ff4_A Probable regulatory pro 84.4 13 0.00044 39.3 14.3 118 168-304 127-250 (388)
250 2ff4_A Probable regulatory pro 84.1 3.7 0.00013 43.6 9.9 71 477-548 174-249 (388)
251 3o48_A Mitochondria fission 1 82.0 5.1 0.00017 34.5 7.8 80 630-709 23-109 (134)
252 4fhn_B Nucleoporin NUP120; pro 81.9 22 0.00077 43.6 17.0 131 440-572 900-1049(1139)
253 4b4t_P 26S proteasome regulato 81.1 63 0.0022 34.6 20.6 61 476-536 179-245 (445)
254 2wpv_A GET4, UPF0363 protein Y 81.0 49 0.0017 33.3 22.4 26 333-358 133-158 (312)
255 3o48_A Mitochondria fission 1 79.4 11 0.00038 32.4 9.0 73 506-578 37-112 (134)
256 4fhn_B Nucleoporin NUP120; pro 78.0 21 0.00071 43.9 14.9 149 268-425 817-992 (1139)
257 1y8m_A FIS1; mitochondria, unk 77.4 24 0.00081 30.8 10.6 72 506-577 36-110 (144)
258 3ffl_A Anaphase-promoting comp 76.0 34 0.0012 30.7 11.6 60 162-221 26-91 (167)
259 1v54_E Cytochrome C oxidase po 75.8 19 0.00063 29.2 8.7 64 489-553 25-88 (109)
260 3lpz_A GET4 (YOR164C homolog); 75.1 76 0.0026 32.3 22.9 110 198-322 40-159 (336)
261 3lvg_A Clathrin heavy chain 1; 74.6 0.0072 2.5E-07 64.0 -14.3 231 195-463 56-286 (624)
262 3ffl_A Anaphase-promoting comp 70.7 13 0.00044 33.4 7.5 29 158-186 65-93 (167)
263 4b4t_R RPN7, 26S proteasome re 70.4 32 0.0011 36.8 12.4 97 195-292 133-236 (429)
264 4b4t_R RPN7, 26S proteasome re 68.9 61 0.0021 34.6 14.2 99 229-328 132-237 (429)
265 1v54_E Cytochrome C oxidase po 68.4 21 0.0007 28.9 7.4 45 422-466 28-72 (109)
266 2y69_E Cytochrome C oxidase su 68.0 30 0.001 29.7 8.7 64 489-553 68-131 (152)
267 1qsa_A Protein (soluble lytic 63.6 1.9E+02 0.0065 32.4 34.9 76 162-245 78-153 (618)
268 1zbp_A Hypothetical protein VP 61.0 24 0.00083 34.5 8.0 54 166-222 7-60 (273)
269 3txn_A 26S proteasome regulato 60.8 1.6E+02 0.0056 30.7 23.8 164 302-466 22-208 (394)
270 4a1g_A Mitotic checkpoint seri 60.6 34 0.0012 30.2 8.2 53 210-262 82-135 (152)
271 3txn_A 26S proteasome regulato 57.6 1.9E+02 0.0063 30.3 23.3 92 304-395 104-207 (394)
272 2y69_E Cytochrome C oxidase su 56.9 38 0.0013 29.0 7.4 45 423-467 72-116 (152)
273 3esl_A Checkpoint serine/threo 56.7 69 0.0024 29.7 9.9 56 206-261 92-148 (202)
274 1zbp_A Hypothetical protein VP 56.5 18 0.00063 35.3 6.3 116 131-256 6-128 (273)
275 2p58_C Putative type III secre 54.7 83 0.0029 25.4 9.0 49 344-398 50-98 (116)
276 2uwj_G Type III export protein 54.6 81 0.0028 25.4 8.4 51 343-399 48-98 (115)
277 3eiq_C Programmed cell death p 53.5 1.3E+02 0.0046 30.8 12.6 26 648-673 220-245 (358)
278 3esl_A Checkpoint serine/threo 53.4 88 0.003 29.0 10.0 53 420-472 95-148 (202)
279 3eiq_C Programmed cell death p 53.4 78 0.0027 32.6 10.8 69 477-546 220-290 (358)
280 2zu6_B Programmed cell death p 53.2 58 0.002 32.8 9.7 26 648-673 169-194 (307)
281 3ltm_A Alpha-REP4; protein eng 52.6 1.4E+02 0.0049 27.4 17.5 109 437-557 93-201 (211)
282 2p58_C Putative type III secre 48.1 82 0.0028 25.4 7.5 46 485-536 51-96 (116)
283 4aez_C MAD3, mitotic spindle c 47.7 61 0.0021 30.7 8.1 53 210-262 131-184 (223)
284 2wvi_A Mitotic checkpoint seri 45.2 55 0.0019 29.3 7.1 51 212-262 79-130 (164)
285 4a1g_A Mitotic checkpoint seri 44.7 1.3E+02 0.0045 26.5 9.3 54 245-299 82-136 (152)
286 2uwj_G Type III export protein 42.9 80 0.0027 25.4 6.7 29 507-537 68-96 (115)
287 2zu6_B Programmed cell death p 38.3 1.1E+02 0.0039 30.6 9.1 64 477-541 169-234 (307)
288 4aez_C MAD3, mitotic spindle c 34.0 68 0.0023 30.3 6.1 51 696-746 132-183 (223)
289 3mv2_A Coatomer subunit alpha; 33.5 3.5E+02 0.012 27.1 11.5 50 526-575 187-238 (325)
290 2xk0_A Polycomb protein PCL; t 33.2 15 0.0005 27.0 1.1 8 1-8 3-10 (69)
291 2r9g_A AAA ATPase, central reg 31.5 2.9E+02 0.01 25.4 9.6 38 486-524 26-63 (204)
292 2h8h_A Proto-oncogene tyrosine 29.7 11 0.00038 41.8 0.0 7 702-708 498-504 (535)
293 1k1a_A B-cell lymphoma 3-encod 29.2 1.1E+02 0.0036 28.9 7.2 17 343-359 85-101 (241)
294 2nsz_A Programmed cell death p 27.0 1.6E+02 0.0056 24.9 7.0 62 478-540 11-74 (129)
295 2nsz_A Programmed cell death p 27.0 1.6E+02 0.0056 24.9 7.0 24 338-361 11-34 (129)
296 2d2s_A Exocyst complex compone 26.7 3E+02 0.01 26.2 9.6 22 306-327 25-46 (235)
297 2r9g_A AAA ATPase, central reg 26.4 3.9E+02 0.013 24.7 9.6 17 383-399 28-44 (204)
298 3pvs_A Replication-associated 26.0 5.3E+02 0.018 27.3 12.5 122 384-524 166-305 (447)
299 4fke_A Aminopeptidase N; zinc 25.9 6.8E+02 0.023 29.4 14.5 155 407-567 689-854 (909)
300 3eu9_A Huntingtin-interacting 25.7 30 0.001 32.9 2.3 12 520-531 218-229 (240)
301 2d2s_A Exocyst complex compone 25.5 4.4E+02 0.015 25.0 13.8 91 162-255 24-118 (235)
302 1qsa_A Protein (soluble lytic 25.4 7.3E+02 0.025 27.6 36.7 373 142-545 88-486 (618)
303 3l6a_A Eukaryotic translation 24.4 3.8E+02 0.013 27.5 10.5 24 196-219 15-38 (364)
304 3mv2_A Coatomer subunit alpha; 23.4 5.7E+02 0.02 25.6 12.0 70 243-328 185-256 (325)
305 4gq2_M Nucleoporin NUP120; bet 23.2 4.3E+02 0.015 31.4 12.1 138 155-313 809-950 (950)
306 3ltm_A Alpha-REP4; protein eng 22.0 4.4E+02 0.015 23.8 18.5 122 368-502 63-184 (211)
307 4gq2_M Nucleoporin NUP120; bet 21.7 5.6E+02 0.019 30.3 12.7 131 340-488 816-950 (950)
308 3bge_A Predicted ATPase; struc 21.0 3.7E+02 0.013 24.7 8.2 33 487-519 20-52 (201)
309 2ion_A PDCD4, programmed cell 21.0 1.5E+02 0.005 26.1 5.6 24 338-361 13-36 (152)
310 3bge_A Predicted ATPase; struc 20.9 3.8E+02 0.013 24.7 8.3 33 382-414 20-52 (201)
311 3ctd_A Putative ATPase, AAA fa 20.7 5.1E+02 0.018 24.1 10.2 37 487-523 48-84 (213)
312 3ctd_A Putative ATPase, AAA fa 20.6 4.7E+02 0.016 24.3 8.9 33 382-414 48-80 (213)
313 2ion_A PDCD4, programmed cell 20.4 1.5E+02 0.005 26.2 5.5 23 443-465 13-35 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-39 Score=378.22 Aligned_cols=492 Identities=12% Similarity=0.037 Sum_probs=408.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
....|..++..+.+.|++++|+.+|++++... ++ ...+..++.+|.+.|++++|+.+|+++... .++..+++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35568889999999999999999999999764 23 357788999999999999999999998653 5689999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRY---------------NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR 299 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 299 (877)
+.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.| ++++|+++|++|.+.+.. +.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCch-hh
Confidence 99999999999999999954321 22335889999999999999 999999999999986433 55
Q ss_pred HHHHHHHHHHHhCCCHHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAAR--NL-FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~--~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
..+..+...+...+..+.+. .+ +..+...+......+|+.++.+|.+.|++++|+++|+++.+. .++..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 56666665554443322221 11 555555554555677888899999999999999999999875 47999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 456 (877)
.+|.+.|++++|+++|+++.+.+ +.+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999875 4577889999999999999999999999998665 668999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 457 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998753 34688999999999999999999999999998753 488999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCC
Q 002814 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (877)
Q Consensus 537 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 616 (877)
+.. ..+..+|..++.+|.+.|++++|++.++++++..+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------------------------------- 506 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK----------------------------------------- 506 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-----------------------------------------
Confidence 763 33688999999999999988877665444333211
Q ss_pred cchhhhhHhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccch
Q 002814 617 KKENRCRQEILCILGVFQKMHKLKIKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNI 693 (877)
Q Consensus 617 ~~~~~~~~~~~~A~~~~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 693 (877)
+.+..|+ ..+|..++.+|.+.|++++|.++|+++.+.+|.+..+...+...+ ..|+
T Consensus 507 ---------------------~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 507 ---------------------KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp ---------------------HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred ---------------------ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 2256787 678999999999999999999999999988887777666665555 6788
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 694 WVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 694 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
+++|.+.|+++++++| .+...|..|+.+|.
T Consensus 566 ~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 566 PGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 9999999999999988 67888888877764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-37 Score=360.61 Aligned_cols=473 Identities=10% Similarity=0.019 Sum_probs=383.3
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
.+...++.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+++.. ..++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 35668899999999999999999999999864 46778999999999999999999999999864 257899999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRN---------------GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF 335 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 335 (877)
.+|.+.| ++++|+++|+++... |...+..+|+.++.+|.+.|++++|.++|++|.+.+. .+..
T Consensus 158 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 235 (597)
T 2xpi_A 158 FCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYE 235 (597)
T ss_dssp HHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhH
Confidence 9999999 999999999953321 2233578899999999999999999999999988652 2566
Q ss_pred HHHHHHHHHHHcCCHHHHHH--H-HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFE--I-MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 412 (877)
.+..+...+...+..+.+.. + +..+...+...+..+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 66666665544433322221 1 444444444455667777888899999999999999988765 578899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492 (877)
Q Consensus 413 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 492 (877)
+|.+.|++++|+.+|+++.+.+ +.+..+++.++.+|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998766 557788899999999999999999999998865 34578889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+|..++.+|.+.|++++|
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A--------- 460 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA--------- 460 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH---------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH---------
Confidence 999999988754 3368899999999999999999999999998763 33677888888888888776654
Q ss_pred hhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 573 KQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAIL 652 (877)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll 652 (877)
+++|++|.+.. ..+..+|+.++
T Consensus 461 ---------------------------------------------------------~~~~~~~~~~~-~~~~~~~~~l~ 482 (597)
T 2xpi_A 461 ---------------------------------------------------------NEYLQSSYALF-QYDPLLLNELG 482 (597)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHC-CCCHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHhC-CCChHHHHHHH
Confidence 44666665522 23678899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhc------CCcc-hhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 002814 653 NACSRCNSFEDASMLLEELRLF------DNQV-YGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~------~~~~-~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (877)
.+|.+.|++++|.++|+++.+. +|.. ..+...+...+ +.|++++|++.++++++.+| .+..+|..|+.+|.
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 9999999999999999999876 5554 33445555444 78999999999999999998 78899999999999
Q ss_pred hcCchhhHHHHHHHhhhhh
Q 002814 725 HFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 725 ~~g~~~~A~~~~~~~~~~~ 743 (877)
+.|++++|.++++++.+..
T Consensus 562 ~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 9999999999999987654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.9e-26 Score=254.29 Aligned_cols=382 Identities=15% Similarity=0.139 Sum_probs=329.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+...+.+.|++++|++.|..+++.. |.+...+..+...+...|++++|...++.+++..+ .+..+|..+..+|.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHC
Confidence 3456778999999999999998875 55667788888999999999999999999988753 4789999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 321 (877)
|++++|+..|+++.+.... +..+|..+..++.+.| ++++|.+.|+++++.... +...+..+...+...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAG-DMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999875422 5678999999999999 999999999999986432 456677888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (877)
Q Consensus 322 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 401 (877)
|+++.+.. +.+..+|+.+...|.+.|++++|++.|+++.+.+.. +...|..+...+...|++++|+..|++..... +
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 99999874 346889999999999999999999999999886433 67889999999999999999999999988764 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (877)
Q Consensus 402 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 481 (877)
.+..++..+...|.+.|++++|+..|+++.+.+ +.+..+|..+...|.+.|++++|...|+++.+. .+.+..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHH
Confidence 467889999999999999999999999999876 557889999999999999999999999999886 356789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 002814 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (877)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 558 (877)
..|.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|+..|+++.+. .|+ ...|..+...+...|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999998764 346889999999999999999999999999874 454 447777666665544
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4e-29 Score=280.63 Aligned_cols=186 Identities=16% Similarity=0.198 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG---------RFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
++.+|++|++.|++++|+++|++|.+.|+.||.+||++||.+|++.+ .+++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44444444444444444444444444444444444444444444333 255666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS 557 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 557 (877)
|++++|.++|++|++.|+.|+..||+.++..|+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-28 Score=276.93 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=146.1
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 002814 318 ARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR---------LDD 387 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~---------~~~ 387 (877)
+..+.+++.+.+.... ..+++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344444554444332 234556666666666666666666666666666666666666666655443 577
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 388 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
|.++|++|...|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 468 ~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888877653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.8e-25 Score=246.34 Aligned_cols=369 Identities=12% Similarity=0.037 Sum_probs=325.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 002814 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (877)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 278 (877)
+...+.+.|++++|.+.++.+.+..+. +..++..+...+...|++++|...++...+... .+..+|..+..++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g- 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG- 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCC-
Confidence 456678899999999999999887543 678888899999999999999999999887543 37889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
++++|++.|+++++... .+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|+++|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999998632 256679999999999999999999999999874 2356778889999999999999999999
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 438 (877)
++.+... -+..+|..+...|.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|+..|++..+.. +.+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9987643 368899999999999999999999999999875 4567889999999999999999999999998765 557
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 518 (877)
..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 8999999999999999999999999999873 3367899999999999999999999999999875 4588999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|+..++++++..|+..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999998752 33567999999999999999999999999999887654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.1e-22 Score=229.24 Aligned_cols=383 Identities=10% Similarity=-0.004 Sum_probs=218.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+......+.+.|++++|+..|+.++... + +..++..++.++.+.|++++|.+.|+++++..+ .+..+|..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 344445555666666666666666666554 1 244555566666666666666666666655432 24555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
+|.+.|++++|+..|+++...+. ++......++..+.... ....+.+.+..+...+..++...+......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 151 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKER-------- 151 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHH--------
Confidence 66666666666666666655432 12223333333332222 222222223222222222222111110000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK---AGRLDDALNMFS 393 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~---~g~~~~A~~~~~ 393 (877)
.......|+.......+..+...... ..+ .-+.+...+..+...+.. .|++++|+.+|+
T Consensus 152 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 152 --------KDKQENLPSVTSMASFFGIFKPELTF-------ANY---DESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCC-------SSC---CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred --------HhhccCCchhHHHHHHHhhcCHHHHH-------HHh---cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 00000112221111111000000000 000 001124444444444444 788888888888
Q ss_pred HHHH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 394 EMKF-----LGI--------GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (877)
Q Consensus 394 ~m~~-----~g~--------~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (877)
++.+ ..- +.+..++..+...+...|++++|...|+++.+.. |+..++..+...|...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHH
Confidence 8776 311 1234567777788888888888888888887765 337778888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002814 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 461 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (877)
.|+++.+.. +.+...|..+...|...|++++|...|+++.+... .+...+..+...|.+.|++++|+.+|+++.+..
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 368 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF- 368 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-
Confidence 888887763 33567788888888888888888888888887653 356778888888888888888888888887642
Q ss_pred CCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 541 RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 541 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
..+..++..+...+.+.|++++|+..+++++...++.
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 2245677888888888888888888777777665543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.8e-22 Score=231.06 Aligned_cols=435 Identities=11% Similarity=-0.000 Sum_probs=314.3
Q ss_pred HHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHH
Q 002814 132 VTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL 211 (877)
Q Consensus 132 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (877)
+...+....++....+.+...+ ++..+..+...+.+.|++++|++.|+.++..+ |.+..++..++.++.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555556555555555554 67788889999999999999999999999885 5567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002814 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 291 (877)
|...|+++...+.. +......++..+.+......+.+.+..+...+..|+...++.......... .......+...+.
T Consensus 92 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 92 AMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE-NLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-CCchhHHHHHHHh
Confidence 99999999987643 444555556555555555555555555554433344333322211111111 1111111111111
Q ss_pred HCCCC--------C-CHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHH
Q 002814 292 RNGVQ--------P-DRITFNSLLAVCSR---GGLWEAARNLFNEMVH-----RGI--------DQDIFTYNTLLDAICK 346 (877)
Q Consensus 292 ~~g~~--------p-~~~t~~~ll~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~ 346 (877)
..... | +...+..+...+.. .|++++|..+|+++.+ ..- +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 11111 1 24445555555554 8999999999999887 311 1235678888999999
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (877)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 426 (877)
.|++++|++.|+++.+... +...+..+...|...|++++|+..++++.... +.+...+..+...|...|++++|+..
T Consensus 250 ~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999887643 38888889999999999999999999988764 45677888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002814 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (877)
Q Consensus 427 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 506 (877)
|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.+....
T Consensus 327 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99998876 5567888899999999999999999999988763 336778889999999999999999999998764321
Q ss_pred -CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 507 -AD----VVLYSALIDALCK---NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 507 -p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
++ ...|..+...|.+ .|++++|...|+++.+.. ..+..++..+..+|.+.|++++|+..++++++..++..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 11 3488889999999 999999999999998753 23566888999999999999999999999999888764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.2e-21 Score=215.87 Aligned_cols=377 Identities=14% Similarity=0.090 Sum_probs=224.4
Q ss_pred hcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 002814 149 FEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV 228 (877)
Q Consensus 149 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 228 (877)
+...+.++..+..++..+.+.|++++|+.+|+.++... +.+..++..++.++...|++++|...|+++++.+.. +.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~ 94 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FT 94 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cH
Confidence 33333344445555566666666666666666665543 333455555666666666666666666666554322 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN-L---VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNS 304 (877)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ 304 (877)
.++..++.+|.+.|++++|+..|+++.+.. |+ . .++..++..+... .+..
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~------------------------~~~~ 148 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ------------------------RLRS 148 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH------------------------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH------------------------HHHH
Confidence 555666666666666666666666665532 32 2 3333333321100 1112
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 384 (877)
+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|+++|+++.+.. +.+..+|..+..+|...|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 2334566677777777777776653 3356667777777777777777777777766542 2256677777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTV------------LSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNALLGG 448 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~ 448 (877)
+++|+..|+++.... +.+...+..+ +..|.+.|++++|+..|+++.+.. +.+ ...|..+...
T Consensus 227 ~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence 777777777776542 2233334333 677777788888888888777643 222 3466777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------
Q 002814 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA---------- 518 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---------- 518 (877)
+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+... -+...+..+..+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccch
Confidence 888888888888888777642 33577777888888888888888888888777532 245555555522
Q ss_pred --HHHcC-----ChHHHHHHHHHH-HHCCCCCC-----------HHHHHHHHHHHhhcCChhhh
Q 002814 519 --LCKNG-----LVESAVSLLDEM-TKEGIRPN-----------VVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 519 --~~~~g-----~~~~A~~~~~~m-~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a 563 (877)
|...| +.+++.+.|+++ .+. .|| ...+..+..+|...++.++.
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33334 566777788763 332 222 12566667777666665544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.6e-21 Score=216.42 Aligned_cols=304 Identities=14% Similarity=0.089 Sum_probs=183.8
Q ss_pred HHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChH
Q 002814 131 HVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVD 210 (877)
Q Consensus 131 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (877)
.+...+....++..+-+.+...+.++..+..+...+...|++++|+..|+.++..+ +.+..++..++.+|.+.|+++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHH
Confidence 34444555555554444455555667788889999999999999999999999885 455778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 002814 211 LAKNIFETALNEGYGNTV---YAFSALISA------------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275 (877)
Q Consensus 211 ~A~~~~~~~~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 275 (877)
+|.+.|+++.+.... +. .++..++.. +.+.|++++|+.+|+++.+... .+..++..+..++.+
T Consensus 112 ~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 999999999986432 45 677777555 5556666666666666654322 245555666666666
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 276 ~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
.| ++++|+++|+++++.. +.+..++..++.+|...|++++|...|+++.+.. +.+...+..+...
T Consensus 190 ~g-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------------ 254 (450)
T 2y4t_A 190 EG-EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------------ 254 (450)
T ss_dssp TT-CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------------
T ss_pred CC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH------------
Confidence 66 6666666666665432 1245555566666666666666666666655442 1123333322000
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-----RVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
. ....+..+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..++++
T Consensus 255 -----~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 255 -----K------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp -----H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -----H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0 0000111245555555555555555555543 222 234555555555666666666666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 431 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
.+.. +.+..+|..+..+|.+.|++++|...|+++.+.
T Consensus 322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5443 334555555666666666666666666665553
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.9e-21 Score=221.46 Aligned_cols=457 Identities=11% Similarity=0.073 Sum_probs=276.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
.+.+..+...+.+.|++++|++.|+.++... |.+..++..++.+|.+.|++++|++.|+++++..+. +..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 4456667777777777777777777777764 445567777777777777777777777777766433 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.++...|++++|+..|+.+ .. .|+.. +..+..+...+ ....|...+++++... |+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~-~~~~a~~~~~~~l~~~--~~~---------------- 156 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERN-LNKQAMKVLNENLSKD--EGR---------------- 156 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHH-HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHH-HHHHHHHHHHHHHHhC--ccc----------------
Confidence 7777777777777777533 21 12211 11122222333 3455555555554321 000
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCH-HHHHHHHHHH--------HHcCCHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV-VTYSTMIDGY--------AKAGRLD 386 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~--------~~~g~~~ 386 (877)
.....|+ ...+..+....+.+.+...+.+.... .+.. .....+...+ ...|+++
T Consensus 157 -----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 157 -----------GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp -------------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred -----------cccccch----HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0001111 11222233333333333333333221 1111 1111111111 1124566
Q ss_pred HHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 387 DALNMFSEMKFLGIGLD-------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (877)
Q Consensus 387 ~A~~~~~~m~~~g~~pd-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 459 (877)
+|+.+|+++.+.. +.+ ..++..+...+...|++++|...|+++.+.. |+..++..+...|...|++++|.
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHH
Confidence 7777777766542 122 2245566667777788888888888877653 45777777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002814 460 RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 460 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (877)
..|+++.+.. +.+..+|..+...|...|++++|...|+++.+... .+...|..+...|.+.|++++|+.+|+++.+..
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877653 33577788888888888888888888888877653 356778888888888888888888888888752
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcch
Q 002814 540 IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (877)
Q Consensus 540 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 619 (877)
..+..++..+...+...|++++|+..++++++..+........+ ..+.....++.... .....
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~-----~~~~~ 437 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI-----------GPLIGKATILARQS-----SQDPT 437 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT-----------HHHHHHHHHHHHHH-----TC---
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH-----------HHHHHHHHHHHHHh-----hccch
Confidence 23456788888888888888888888888888776553211100 00011111121110 00000
Q ss_pred hhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhH
Q 002814 620 NRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (877)
Q Consensus 620 ~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (877)
....+++++|+..|+++.+ ..| +..++..+..+|.+.|++++|.+.|+++.+.+|.....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred hhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 0011588899999999987 445 56778999999999999999999999999888876544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=6.1e-21 Score=219.83 Aligned_cols=427 Identities=13% Similarity=0.058 Sum_probs=322.3
Q ss_pred HHHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh
Q 002814 130 HHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV 209 (877)
Q Consensus 130 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 209 (877)
..+...+....++..+.+.+...+.++..+..+...+.+.|++++|++.|+.++..+ +.+..++..++.++...|++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHcCCH
Confidence 345556777788877777787777788899999999999999999999999999885 55677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCCCHHHH
Q 002814 210 DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKPNLVTYNAVIDACGKGGVDFKHV 283 (877)
Q Consensus 210 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~~a 283 (877)
++|...|+ ..... |+ .....+..+...+...+|+..++++... ...|+..... .+.... +.+.+
T Consensus 110 ~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~ 179 (537)
T 3fp2_A 110 TDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIF-DSHLE 179 (537)
T ss_dssp HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTS-CHHHH
T ss_pred HHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhc-ChHHH
Confidence 99999996 44332 22 2233455666777788999999998653 1234444333 344444 55655
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHc
Q 002814 284 VEIFDDMLRNGVQPDRI-TFNSLLAVCSR--------GGLWEAARNLFNEMVHRGIDQD-------IFTYNTLLDAICKG 347 (877)
Q Consensus 284 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~--------~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~ 347 (877)
...+..... ..+... ....+...+.. .|++++|..+|+++.+.... + ..++..+...+...
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 554443322 122222 22333333222 25789999999999876422 2 33577777888899
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (877)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 427 (877)
|++++|++.|+++.+. .|+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|+..|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999886 4568889999999999999999999999998774 556888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 002814 428 KEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG--- 504 (877)
Q Consensus 428 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--- 504 (877)
+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9998865 5567889999999999999999999999998863 4467789999999999999999999999987642
Q ss_pred --CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 505 --LKADVVLYSALIDALCKN----------GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 505 --~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
.......+..+...+.+. |++++|+..|+++.+.. ..+..++..+..+|.+.|++++|+..++++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 112233355556777787 99999999999998753 23567899999999999999999999999999
Q ss_pred hhhhhh
Q 002814 573 KQKESA 578 (877)
Q Consensus 573 ~~~~~~ 578 (877)
..+...
T Consensus 491 ~~~~~~ 496 (537)
T 3fp2_A 491 LARTMD 496 (537)
T ss_dssp HC--CH
T ss_pred hCCCcH
Confidence 887654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.2e-17 Score=180.81 Aligned_cols=330 Identities=15% Similarity=0.089 Sum_probs=209.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
++.+..+...+.+.|++++|+..|+.++... +.+..++..++.++...|++++|...|+++++.... +..++..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence 4556677888888999999999999998875 455678888999999999999999999999886433 678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
..|...|++++|+..|+++.+. .| +...+..+.... . ...+..+...+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~--------~----------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD--------E----------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
Confidence 9999999999999999998874 34 223333331100 0 0012223344555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
.|++++|..+++++.+.. +.+..++..+...|.+.|++++|++.++++.+.. +.+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555542 2245555555555556666666666665555442 22455555556666666666666666
Q ss_pred HHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCH
Q 002814 392 FSEMKFLGIGLDRVSYN------------TVLSIYAKLGRFEEALLVCKEMESSGIRKDA----VTYNALLGGYGKQGKY 455 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~ 455 (877)
|++..+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+...|.+.|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 66555442 22222222 22455677777777777777776643 2233 2244566677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 456 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
++|...|++..+.. +.+..+|..+...|...|++++|.+.|+++.+... -+...+..+..+...
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 77777777776652 33567777777777777777777777777776542 245555555555443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2.8e-16 Score=178.43 Aligned_cols=353 Identities=14% Similarity=0.040 Sum_probs=292.7
Q ss_pred ChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 002814 155 GADDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR----LGKVDLAKNIFETALNEGYGN 226 (877)
Q Consensus 155 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~ 226 (877)
+++....+...|.. .+++++|+..|+.+...+ +...+..|...|.. .+++++|.+.|+++.+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 45566667777776 789999999999988764 24577778888888 899999999999998864
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCCCC
Q 002814 227 TVYAFSALISAYGR----SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVVEIFDDMLRNGVQPD 298 (877)
Q Consensus 227 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~g~~p~ 298 (877)
+..++..|...|.. .+++++|+.+|++..+.| +...+..+...|.. .+ ++++|++.|++..+.| +
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---C
Confidence 67788888888888 789999999999988764 67777778887776 66 8999999999998864 6
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhCCCCCCHH
Q 002814 299 RITFNSLLAVCSR----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVV 370 (877)
Q Consensus 299 ~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~ 370 (877)
...+..|...|.. .+++++|.++|++..+.| +...+..|...|.. .+++++|+++|++..+.| +..
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7788888888887 889999999999998875 67788888888886 789999999999988764 667
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHH
Q 002814 371 TYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVT 441 (877)
Q Consensus 371 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~ 441 (877)
.+..+...|.. .++.++|+++|++..+.| +...+..|...|... ++.++|+..|++..+.| +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 77788888888 889999999999988765 566777788888877 89999999999988865 5677
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 442 YNALLGGYGKQG---KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSA 514 (877)
Q Consensus 442 ~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 514 (877)
+..+...|.+.| +.++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 788888887766 7889999999988874 67888888888888 789999999999998865 6778888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCC
Q 002814 515 LIDALCK----NGLVESAVSLLDEMTKEGI 540 (877)
Q Consensus 515 li~~~~~----~g~~~~A~~~~~~m~~~g~ 540 (877)
|...|.+ .++.++|...|++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8888888 7899999999999988653
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.4e-17 Score=178.52 Aligned_cols=331 Identities=13% Similarity=0.119 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 193 GKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
...+..++..+...|++++|...|+++++..+. +..++..+...+...|++++|+..|+++.+.... +...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 345666777778888888888888888776433 5777777888888888888888888887764322 56677777777
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 002814 273 CGKGGVDFKHVVEIFDDMLRNGVQP----DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (877)
Q Consensus 273 ~~~~g~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 348 (877)
+...| ++++|...|+++.+. .| +...+..+...+. ...+..+...+...|
T Consensus 81 ~~~~~-~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQG-KLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHT-CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcC-ChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 77777 788888888877764 33 2222222222110 122444577889999
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 428 (877)
++++|+++|+++.+... .+...+..+...|...|++++|+..++++.+.. +.+..++..+...|...|++++|...|+
T Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999987643 478899999999999999999999999999874 5678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 002814 429 EMESSGIRKDAVTYNA------------LLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKE 492 (877)
Q Consensus 429 ~m~~~g~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~ 492 (877)
+..+.. +.+...+.. +...+.+.|++++|...|+++.+.... +. ..+..+..+|.+.|++++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 998765 445554432 366799999999999999999886322 33 335568889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 558 (877)
|...|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+. .|+ ...+..+..+....+
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 999999999864 347889999999999999999999999999985 455 556777776665443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.5e-16 Score=175.38 Aligned_cols=364 Identities=12% Similarity=0.056 Sum_probs=315.0
Q ss_pred HHHHHHHHHccccCCChHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 002814 176 IQCFAFAVKREERKNDQGKLASAMISILGR----LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR----SGYCQEA 247 (877)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 247 (877)
++.+..+...+ +...+..+...|.. .+++++|...|+++.+.| +..++..|...|.. .+++++|
T Consensus 27 ~~~~~~~a~~g-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 27 LEQLKQKAESG-----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp HHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 44455444432 34566777888877 899999999999998874 67889999999998 8999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 002814 248 ISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR----GGLWEAAR 319 (877)
Q Consensus 248 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~ 319 (877)
+++|++..+.| +...+..|...|.. .+ ++++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998864 67788888888877 67 9999999999999875 67788888888887 78999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 002814 320 NLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNM 391 (877)
Q Consensus 320 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~ 391 (877)
+.|++..+.| +...+..|...|.+ .+++++|++.|++..+.| +...+..+...|.. .+++++|+++
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999975 78899999999998 899999999999998874 67888889999987 8999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002814 392 FSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ-----GKYDEVRRMF 462 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 462 (877)
|++..+.| +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998765 56777888888888 899999999999998765 677888888899887 8999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 002814 463 EQMKADCVSPNLLTYSTLIDVYSKGG---LYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEM 535 (877)
Q Consensus 463 ~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 535 (877)
++..+.| +...+..|...|...| +.++|.+.|++..+.| +...+..|...|.. .+++++|+..|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999875 6778888999998877 7899999999999874 78899999999999 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhh----cCChhhhHHHHHHHhhhhh
Q 002814 536 TKEGIRPNVVTYNSIIDAFGR----SATTECTVDDVERDLGKQK 575 (877)
Q Consensus 536 ~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~l~~~~ 575 (877)
.+.| +...+..|...|.+ .++.++|+..++++++..+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9875 57788888888887 8999999999999999873
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=3.1e-16 Score=179.91 Aligned_cols=415 Identities=11% Similarity=0.081 Sum_probs=309.9
Q ss_pred cCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
.+.+.+.|..++. +.+.|++++|+.+|++++... |.+..+|...+..+.+.|++++|+++|++++... |++..|
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~---P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 4556777888887 477899999999999999884 5667899999999999999999999999998864 578888
Q ss_pred HHHHHHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCC
Q 002814 232 SALISAY-GRSGYCQEAIS----VFNSMKR-YNLKP-NLVTYNAVIDACGK---------GGVDFKHVVEIFDDMLRNGV 295 (877)
Q Consensus 232 ~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~~a~~~~~~m~~~g~ 295 (877)
..++... ...|+.++|.+ +|++... .|..| +...|...+....+ .| +++.|..+|++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchh
Confidence 8887633 45677777665 7777654 35444 56778777776544 56 79999999999988311
Q ss_pred CCCHHHHHHHHHHH-------------HhCCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHH
Q 002814 296 QPDRITFNSLLAVC-------------SRGGLWEAARNLFNEMV------HRG---IDQD--------IFTYNTLLDAIC 345 (877)
Q Consensus 296 ~p~~~t~~~ll~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~ 345 (877)
......|....... .+.++++.|..++.++. +.. ++|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123343322211 12456777887777632 211 2333 346666654433
Q ss_pred Hc----CCH----HHHHHHHHHchhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCC
Q 002814 346 KG----AQM----DLAFEIMAEMPAKNISPNVVTYSTMIDGYAK-------AGRLD-------DALNMFSEMKFLGIGLD 403 (877)
Q Consensus 346 ~~----g~~----~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~pd 403 (877)
.. ++. +.|+.+|++..... +-+...|..++..+.+ .|+++ +|.++|++..+.-.+-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 32 222 47788898888753 3378889888888876 69987 89999999986322446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA-VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
...|..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 8889999999999999999999999999864 3343 589999999999999999999999998763 223333333332
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhhcC
Q 002814 483 V-YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRPN--VVTYNSIIDAFGRSA 558 (877)
Q Consensus 483 ~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g 558 (877)
. +...|+.++|..+|++.++.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+....+.|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999998764 2368899999999999999999999999999863 2332 458888888889999
Q ss_pred ChhhhHHHHHHHhhhhhhh
Q 002814 559 TTECTVDDVERDLGKQKES 577 (877)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~ 577 (877)
+.+.+..+..++++..|+.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 9999999999999988854
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=4.7e-15 Score=175.17 Aligned_cols=362 Identities=11% Similarity=0.105 Sum_probs=271.7
Q ss_pred cCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
+..+|+.....+++|...|.+.+|++++++++..+....++..+.+.++.+..+. +.....++..+..+. ..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DA 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cH
Confidence 3456888888999999999999999999999855432234555666677666666 445555555444321 13
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002814 232 SALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (877)
Q Consensus 232 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 311 (877)
.-+...+...|.+++|..+|++... .....+.++. ..+ ++++|.+++++. -+..+|..+..++..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~-nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIG-NLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHh-hHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 4477788889999999999998632 3344455544 445 889999998865 257788899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (877)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 391 (877)
.|++++|++.|.+. .|...|..++.+|.+.|++++|++.|....+.. ++....+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999998664 378888889999999999999999998877653 3333344589999999998854333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002814 392 FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS 471 (877)
Q Consensus 392 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 471 (877)
. . .++...|..+...|...|++++|...|... ..|..+...|.+.|++++|.+.+++..
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 2 1 456677778999999999999999999885 488899999999999999999998873
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 002814 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSI 550 (877)
Q Consensus 472 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 550 (877)
+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.. .+... .|+-|
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftEL 1320 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTEL 1320 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHH
Confidence 6799999999999999999998876643 246777889999999999999999999887753 34433 56555
Q ss_pred HHHH--hhcCChhhhHHHHHHHhhh
Q 002814 551 IDAF--GRSATTECTVDDVERDLGK 573 (877)
Q Consensus 551 i~~~--~~~g~~~~a~~~~~~~l~~ 573 (877)
..+| .+-+++.++++.+...+..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccc
Confidence 5444 4556677777766655543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=5.3e-16 Score=178.00 Aligned_cols=433 Identities=10% Similarity=0.046 Sum_probs=248.5
Q ss_pred HHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002814 179 FAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 258 (877)
|+.+++.+ |.+..+|..++. +.+.|++++|+.+|+++++.. +.+...|..++..+.+.|++++|..+|+++...
T Consensus 2 le~al~~~---P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~- 75 (530)
T 2ooe_A 2 AEKKLEEN---PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK- 75 (530)
T ss_dssp HHHHHHHC---TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-
T ss_pred hhhHhhhC---CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Confidence 45566664 556778888888 478899999999999999864 447889999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHH-HcCCCCHHHHH----HHHHHHHH-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHH
Q 002814 259 LKPNLVTYNAVIDAC-GKGGVDFKHVV----EIFDDMLR-NGVQP-DRITFNSLLAVCSR---------GGLWEAARNLF 322 (877)
Q Consensus 259 ~~p~~~~~~~ll~~~-~~~g~~~~~a~----~~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~g~~~~A~~~~ 322 (877)
.|+...|...+... ...| +.+.|. ++|++.+. .|..| +...|...+....+ .|+++.|+.+|
T Consensus 76 -~p~~~lw~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 -VLHIDLWKCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp -CCCHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 36887887777543 3345 555554 47777764 35444 45667777766554 67889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Q 002814 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK------ 396 (877)
Q Consensus 323 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~------ 396 (877)
++.++.........|..........|. ..+..++.+ +.++++.|..+++++.
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~---------------------~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIED---------------------RSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT---------------------THHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHHh
Confidence 998873111112334333221111110 001111100 1223344444443311
Q ss_pred HCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH------
Q 002814 397 FLG---IGLD--------RVSYNTVLSIYAKL----GRF----EEALLVCKEMESSGIRKDAVTYNALLGGYGK------ 451 (877)
Q Consensus 397 ~~g---~~pd--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~------ 451 (877)
+.. +.|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 110 1222 12333333322221 121 35556666665543 4456666666666554
Q ss_pred -cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 002814 452 -QGKYD-------EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKN 522 (877)
Q Consensus 452 -~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 522 (877)
.|+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++.... + ...|..++..+.+.
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHh
Confidence 56655 66777776665212334666666666666777777777777777664211 2 24666666666667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHH
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDA-FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (877)
|++++|.++|++..+.. ..+...|...... +...|+.++|...++++++..|+...+ |...
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~-----------------~~~~ 431 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY-----------------VLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH-----------------HHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH-----------------HHHH
Confidence 77777777777766542 1122222222211 234667777777777777666544311 1111
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 002814 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK-IKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDN 676 (877)
Q Consensus 602 ~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g-~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (877)
+.++. ..|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++++.+.+..|
T Consensus 432 ~~~~~---------------~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 432 IDYLS---------------HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHT---------------TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHH---------------hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 11111 0124455666666666532 2332 33566666666677888888888877775554
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.4e-17 Score=173.01 Aligned_cols=286 Identities=10% Similarity=0.017 Sum_probs=208.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 233 (877)
.+++.+..++..+...|++++|+++|+.++...+ .+...+..++.++...|++++|..+++++++.... +..+|..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP---FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 4566777788888889999999999999988763 33446677788889999999999999999886543 6788888
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 234 LISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 234 li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
+...+...| ++++|+..|+++.+.... +...|..+...+...| ++++|++.|+++++.... +...+..+...|...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 999999999 899999999999875432 5677888888888888 899999999988876433 455666678888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC--------CCCCHHHHHHHHHHHHHcCC
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN--------ISPNVVTYSTMIDGYAKAGR 384 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~pd~~~~~~li~~~~~~g~ 384 (877)
|++++|...++++.+.. +.+..++..+...|.+.|++++|++.|++..+.. ...+..++..+...|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888887764 3356777777778888888888887777765421 12234566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 385 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
+++|+..|++..+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+..++
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 666666666666543 3345556666666666666666666666665543 33455555555555
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=8e-17 Score=172.26 Aligned_cols=290 Identities=12% Similarity=-0.004 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341 (877)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 341 (877)
+...+..+...+...| ++++|+++|+++++.... +...+..++..+...|++++|..+++++.+.. +.+...|..+.
T Consensus 21 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3334445555555556 666666666666554221 33344445555666666666666666666543 22455666666
Q ss_pred HHHHHcC-CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002814 342 DAICKGA-QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (877)
Q Consensus 342 ~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 420 (877)
..+...| ++++|++.|++..+... .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 6666666 66667777766665432 245666777777777777777777777776653 33445566677777777778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 002814 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC--------VSPNLLTYSTLIDVYSKGGLYKE 492 (877)
Q Consensus 421 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~g~~~~ 492 (877)
++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. ...+..++..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88887777777664 5567777778888888888888888887776531 13345678888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hhcCCh
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAF-GRSATT 560 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~-~~~g~~ 560 (877)
|...|+++.+... .+...|..+...|.+.|++++|.+.|+++.+. .| +...+..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 8888888877653 36778888888888889999999888888764 34 455777777766 455543
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.3e-14 Score=171.40 Aligned_cols=386 Identities=10% Similarity=0.116 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002814 193 GKLASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (877)
Q Consensus 193 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 270 (877)
+.-....+.+|...|...+|+++++++.-.+. ..+....+.|+....+. +..+..+..++.... + ..-+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHH
Confidence 33456778888899999999999999984321 23556777788777777 446666666655431 2 33366
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 002814 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM 350 (877)
Q Consensus 271 ~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 350 (877)
..+...| .+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++
T Consensus 1057 ~Iai~lg-lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1057 NIAISNE-LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHhCC-CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 6677888 8999999999852 12233333433 668889998888755 2578888999999999999
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 351 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
++|++.|.+. -|...|.-++.+|.+.|++++|++.|...++.. ++....+.++.+|++.+++++....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----
Confidence 9999999764 277888889999999999999999998877663 3433444588899999888853333
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002814 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV 510 (877)
Q Consensus 431 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 510 (877)
++ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 22 456677778999999999999999999885 47889999999999999999999876 3678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchh
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (877)
+|..+..+|...|++..|......+ .-+...+..++..|.+.|.+++|+.+++.+++..+...
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~------------ 1314 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM------------ 1314 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh------------
Confidence 9999999999999988888766543 33666777899999999999999999999888765432
Q ss_pred hhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHcCCCHHHH
Q 002814 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP------NVVTFSAILNACSRCNSFEDA 664 (877)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P------d~~t~~~ll~a~~~~g~~~eA 664 (877)
+.+..+..++.+. .-++..+++++|..-.. +.| +...|.-+...|.+.|+++.|
T Consensus 1315 -----gmftELaiLyaKy-------------~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1315 -----GMFTELAILYSKF-------------KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred -----HHHHHHHHHHHhC-------------CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 2333444444321 11255667777775432 333 455688888888899999888
Q ss_pred HHHH
Q 002814 665 SMLL 668 (877)
Q Consensus 665 ~~~~ 668 (877)
....
T Consensus 1375 ~~tm 1378 (1630)
T 1xi4_A 1375 IITM 1378 (1630)
T ss_pred HHHH
Confidence 7543
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.1e-16 Score=178.56 Aligned_cols=109 Identities=10% Similarity=-0.063 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHH
Q 002814 625 EILCILGVFQKMHKLKIKPNV--VTFSAILN-ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLF 701 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~Pd~--~t~~~ll~-a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~ 701 (877)
++++|++.|++.++....+.. ..+..+.. .....|+.++|+..|+++.+++|.... ..+....+.+++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~---------~~~~~~~l~~~~ 419 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE---------KEKMKDKLQKIA 419 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHH
Confidence 445555566665553222211 12233332 235679999999999999998887654 234556778888
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 702 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.++.+| .+..+|+.|+.+|...|++++|.+.++++++.+
T Consensus 420 ~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 420 KMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999 788999999999999999999999999998764
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.7e-17 Score=178.07 Aligned_cols=305 Identities=13% Similarity=-0.030 Sum_probs=159.9
Q ss_pred ccCCHHHHHH-HHHHHHHccccCCC-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 168 NRGEWSKAIQ-CFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 168 ~~g~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
..|++++|++ .|..++......+. ....+..++..+.+.|++++|...|+++++... .+..+|..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 4467777777 77666554322111 133456677777788888888888888777643 36677777777788888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 325 (877)
+|+..|+++.+.... +..++..+...+...| ++++|++.|++++..... +...+..+... .. .
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNES-LQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 888888877764432 6677777777777777 778888888777765322 11111111000 00 0
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 326 VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR 404 (877)
Q Consensus 326 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 404 (877)
. . ....+..+...+ ..|++++|++.|+++.+..... +..++..+...|.+.|++++|+..|+++.... +.+.
T Consensus 179 ~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 A----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0 0 000011111122 4455555555555554432111 34455555555555555555555555554442 2334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CCH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS----------PNL 474 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p~~ 474 (877)
.++..+...|.+.|++++|+..|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.... ...
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 555555555555555555555555555443 334555555555555556666665555555442110 014
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFR 498 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~ 498 (877)
.+|..+..+|...|+.++|..+++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 556666666666666666655554
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=6.7e-17 Score=176.02 Aligned_cols=308 Identities=13% Similarity=0.053 Sum_probs=171.6
Q ss_pred cCCHHHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 241 SGYCQEAIS-VFNSMKRYNLK-P--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 241 ~g~~~~A~~-~~~~m~~~g~~-p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
.|++++|++ .|++....... | +...+..+...+.+.| ++++|+.+|+++++... .+..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 355556655 55544432111 1 2334555555555666 66666666666665432 24455555666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
+|...|+++.+.. +.+..++..+...|...|++++|++.|+++...... +...+..+... ... .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-------~ 179 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG-------A 179 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-------h
Confidence 6666666665543 224555666666666666666666666655544211 11111100000 000 0
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 002814 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (877)
Q Consensus 397 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 474 (877)
.+ ...+..+... ...|++++|+..|+++.+.. +. +..++..+...|.+.|++++|...|+++.+.. +.+.
T Consensus 180 ----~~-~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 180 ----GL-GPSKRILGSL-LSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp -----------CTTHHH-HHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----cc-cHHHHHHHHH-hhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 0011112222 26667777777777666553 22 46667777777777777777777777766642 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----------CH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP----------NV 544 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~ 544 (877)
.+|..+...|.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 677777777777777777777777776654 2356677777777777778888877777776531110 14
Q ss_pred HHHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 545 VTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 545 ~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
.+|..+..+|.+.|+.++|...+.++++...
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 6788888888888888888877777776644
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=5.1e-17 Score=173.33 Aligned_cols=283 Identities=15% Similarity=0.195 Sum_probs=117.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHH
Q 002814 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKH 282 (877)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 282 (877)
+-+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...| ++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g-~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC-CHHH
Confidence 346777888888888872 2348888888888888888888888653 46668888888888888 8888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 283 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
|+.+++..++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 88877766653 3456778888888888888888887774 256678888888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 363 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+ ..++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 25888888888888888888888877 26788888888888888888885554432 2344445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHH
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG--GLYKEAMQIFREFKQAGLKA------DVVLYSA 514 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~ 514 (877)
..++..|.+.|++++|..+++..+... .-....|+.|...|++- +++.+.++.|..- .++++ +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 567888888888888888888877653 44567777777777654 3455555554321 11111 2335566
Q ss_pred HHHHHHHcCChHHHHH
Q 002814 515 LIDALCKNGLVESAVS 530 (877)
Q Consensus 515 li~~~~~~g~~~~A~~ 530 (877)
++-.|.+.++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 6666666666666654
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.5e-15 Score=169.82 Aligned_cols=386 Identities=10% Similarity=-0.058 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----
Q 002814 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRY-----N--LKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----- 293 (877)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----- 293 (877)
.+..||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...| ++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhcc
Confidence 4567888888888999999999999887542 1 122 4567888888888888 888888888877642
Q ss_pred C-CC-CCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHchhCCCC
Q 002814 294 G-VQ-PDRITFNSLLAVCSR--GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKNIS 366 (877)
Q Consensus 294 g-~~-p~~~t~~~ll~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~ 366 (877)
+ .. ....++..+..++.. .+++++|+..|++.++... .+...+..+..++ ...++.++|++.|++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11 134556555555444 3467888888888877542 2455555555443 345666777777777666432
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 367 PNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (877)
Q Consensus 367 pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 442 (877)
.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|+..+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 245555555544443 456677777777776654 4456677777777888888888888887777654 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 522 (877)
..+...|...+....+... ..........+..++|...|++..+... .+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE----------------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHH----------------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh
Confidence 6666555332111110000 0000111122346778888888877542 3556778888889999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchh
Q 002814 523 GLVESAVSLLDEMTKEGIRPNVV--TYNSIID-AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (877)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (877)
|++++|+..|++.++....+... .+..+.. ...+.|+.++|+..+.++++..++.... .
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~------------------~ 409 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK------------------E 409 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH------------------H
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH------------------H
Confidence 99999999999988754332221 2222222 2346678888888888887766543210 0
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcc
Q 002814 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV 678 (877)
Q Consensus 600 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~ 678 (877)
. ....+..++++.+. ..| +..+|..|+.+|...|++++|.+.|+++++.++.+
T Consensus 410 ~------------------------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 410 K------------------------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp H------------------------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred H------------------------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 0 11122334444443 234 45567777777777777777777777776655543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=4.1e-16 Score=166.42 Aligned_cols=270 Identities=8% Similarity=-0.007 Sum_probs=181.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 382 (877)
..+...+...|++++|..+|+++.+.. +.+..++..+..++.+.|++++|++.|+++.+.. +.+..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444555555555555555554432 2244455555555555555555555555554432 12445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHH-------------H-HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNT-------------V-LS-IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~-------------l-i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
|++++|++.++++.+.. +.+...+.. + .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555555442 111111111 1 22 3667788888998888888765 557888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.|.+.|++++|...++++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...|..+...|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 8999999999999999888763 3467888889999999999999999999988765 3367888889999999999999
Q ss_pred HHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 528 AVSLLDEMTKEGIRP-----------NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 528 A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
|.+.|+++.+..... +..+|..+..++.+.|+.++|...++++++..++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 999999988642111 356888899999999999999998888887766554
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.3e-16 Score=171.63 Aligned_cols=265 Identities=10% Similarity=-0.024 Sum_probs=180.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHH
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA 380 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 380 (877)
.+..+...+.+.|++++|+.+|+++++.. +.+..+|..+..+|.+.|++++|++.|+++.+... .+..+|..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 35555556666666666666666665543 23455666666666666666666666666655422 24566666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLD-----------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALLG 447 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~ 447 (877)
..|++++|++.|+++.+.. |+ ...+..+...+.+.|++++|+..|+++.+.. +. +..++..+..
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 6666666666666665431 11 2234455777888888888888888888765 33 6788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 8889999999999998888763 4467888899999999999999999999988764 2357888889999999999999
Q ss_pred HHHHHHHHHHCCCC-----------CCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 528 AVSLLDEMTKEGIR-----------PNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 528 A~~~~~~m~~~g~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
|+..|+++.+.... .+..+|..+..++...|+.+.+.....+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999988763100 0256788899999999998887766555443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3.8e-16 Score=169.94 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=137.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|++.|+.++... +.+..++..++.++.+.|++++|+..|+++++... .+..+|..+...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 35556666666677777777776666653 33455666666666666777777777766666532 246666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
|...|++++|+..|+++.+.. |+.. .+..+ ......+..+...+...|+++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------CCHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 666666666666666665421 1110 01000 000112223344444455555
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
+|..+|+++.+.... .+..++..+...|.+.|++++|++.|+++.+... .+..+|..+..+|.+.|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555443211 1344555555555555555555555555444321 23445555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 396 KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-----------RKDAVTYNALLGGYGKQGKYDEVRRMFEQ 464 (877)
Q Consensus 396 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 464 (877)
.+.. +.+..++..+..+|.+.|++++|...|+++.+..- ..+..+|..+..++...|+.+.+.++..+
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 4442 22344555555555555555555555555443210 00244566666666666666666555543
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=189.65 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMES---SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
-..||++||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 002814 480 LIDVYSKGGL-YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN------VVTYNSIID 552 (877)
Q Consensus 480 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~ 552 (877)
||.++++.|+ .++|.++|++|.+.|+.||.++|++++.++.+. ..++..+++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 8888888876 467788888888888888888888888766554 333333333 2244444 335556666
Q ss_pred HHhhcCC
Q 002814 553 AFGRSAT 559 (877)
Q Consensus 553 ~~~~~g~ 559 (877)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 6666654
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=189.39 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKF---LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 444 (877)
-..|||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002814 445 LLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (877)
Q Consensus 445 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 488 (877)
||+++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9999999987 5788899999999999999999998887766543
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=2.9e-15 Score=159.81 Aligned_cols=278 Identities=10% Similarity=-0.020 Sum_probs=167.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
.+.+..+...+...|++++|+.+|+.++... +.+..++..++.++...|++++|.+.|+++.+... .+..++..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence 3456667788888999999999999998875 45567888889999999999999999999988743 3678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhCC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA--VCSRGG 313 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g 313 (877)
..|...|++++|++.|+++.+.... +...+..++..+ ++......+.. .+...|
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------CCTTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcc
Confidence 9999999999999999998875322 222222220000 00001111111 134445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
++++|...++++.+.. +.+..++..+...|.+.|++++|++.++++.+... .+..+|..+...|...|++++|++.|+
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 12445555555555555555555555555544321 244555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK------------DAVTYNALLGGYGKQGKYDEVRRM 461 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------------~~~~~~~li~~~~~~g~~~~A~~~ 461 (877)
++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +. +..+|..+..+|.+.|+.++|..+
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 555442 3345555666666666666666666666655432 11 355666666666666666666666
Q ss_pred HHHH
Q 002814 462 FEQM 465 (877)
Q Consensus 462 ~~~m 465 (877)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 6543
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=4.3e-17 Score=173.92 Aligned_cols=287 Identities=14% Similarity=0.185 Sum_probs=132.8
Q ss_pred HcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
+.|++++|.++++++. +..+|+.|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6678899999998883 335899999999999999999999965 3577789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002814 426 VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (877)
Q Consensus 426 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 505 (877)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77776663 4567888899999999999999888875 367789999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhc
Q 002814 506 KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCS 585 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~ 585 (877)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L-------------- 203 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-I-------------- 203 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-T--------------
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-H--------------
Confidence 47899999999999999999999988 2788999999999999999888442110 0
Q ss_pred cCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 002814 586 QDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDAS 665 (877)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~ 665 (877)
.+.||. ...++..|.+.|.+++|.
T Consensus 204 ------------------------------------------------------~~~ad~--l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 204 ------------------------------------------------------VVHADE--LEELINYYQDRGYFEELI 227 (449)
T ss_dssp ------------------------------------------------------TTCHHH--HHHHHHHHHHTTCHHHHH
T ss_pred ------------------------------------------------------HhCHhh--HHHHHHHHHHCCCHHHHH
Confidence 022222 224667778888888888
Q ss_pred HHHHHHHhcCCcchhHHHHHhhc---cccchHHHHHHHHHHHhhcCC----CcchhHHHHHHHHHHhcCchhhHHHHHHH
Q 002814 666 MLLEELRLFDNQVYGVAHGLLMG---YRDNIWVQALSLFDEVKLMDS----STASAFYNALTDMLWHFGQKRGAQLVVLE 738 (877)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (877)
.+++.....++...++...+... |+.+++.++.++|.+.+.+.+ ..+...|..+.-+|.+.++++.|....-+
T Consensus 228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 88888888887777776655332 366778888888776544322 12456799999999999999999876544
Q ss_pred h
Q 002814 739 G 739 (877)
Q Consensus 739 ~ 739 (877)
.
T Consensus 308 h 308 (449)
T 1b89_A 308 H 308 (449)
T ss_dssp S
T ss_pred C
Confidence 3
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=8.5e-15 Score=153.17 Aligned_cols=253 Identities=13% Similarity=0.084 Sum_probs=149.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 316 (877)
-....|+++.|+..+++...............+.++|...| +++.|+..++.. -.|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g-~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQR-KYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTT-CHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCC-CHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666666665543221111234445556666666 666666554331 2345556666666666667777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 317 AARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 317 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
+|.+.++++...+..| +...+..+..+|.+.|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777766654323 455556666667777777777777766 235666666777777777777777777776
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 396 KFLGIGLDRVSY---NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 396 ~~~g~~pd~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|...|+++++.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6652 332211 112233333466777777777666653 5566666667667777777777777777666542 33
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 002814 473 NLLTYSTLIDVYSKGGLYKE-AMQIFREFKQAG 504 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~g 504 (877)
+..++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 56666666666666666654 456666666543
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=7.4e-15 Score=153.61 Aligned_cols=219 Identities=17% Similarity=0.123 Sum_probs=101.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhC
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRG 312 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 312 (877)
+.++|...|++++|+..++.. -.|+..++..+...+...+ +.++|++.+++++..+..| +...+..+..++...
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~-~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS-RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST-THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 344444444444444433321 1223344444444444444 4445555555444443222 223333333444445
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHH---HHHHHHHHHcCCHHHHH
Q 002814 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY---STMIDGYAKAGRLDDAL 389 (877)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~---~~li~~~~~~g~~~~A~ 389 (877)
|++++|++.+++ +.+...+..++..|.+.|++++|++.|+++.+.. |+.... ..++..+...|++++|+
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 555555554444 2344445555555555555555555555544432 221110 11222222335555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 002814 390 NMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE-VRRMFEQMKA 467 (877)
Q Consensus 390 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 467 (877)
.+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 187 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555555442 3445555555555555555555555555555443 3445555555555555555543 3455555554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.1e-13 Score=139.72 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCC--CC----HHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PN----VVTYS 373 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd----~~~~~ 373 (877)
..+..+...+...|++++|...|+++++.. .+..++..+..+|...|++++|++.|++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666654 45566666666666666666666666665543111 11 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 453 (877)
.+...|.+.|++++|++.|+++... .++. ..+.+.|++++|...++++.... +.+...+..+...|...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6666677777777777777766654 2332 33455566677777777766543 334556666666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002814 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (877)
Q Consensus 454 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (877)
++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...|..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777766542 3356666667777777777777777777766654 2346666667777777777777777777
Q ss_pred HHHH
Q 002814 534 EMTK 537 (877)
Q Consensus 534 ~m~~ 537 (877)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.9e-13 Score=137.64 Aligned_cols=225 Identities=12% Similarity=0.111 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CC----HHH
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PD----RIT 301 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~--p~----~~t 301 (877)
...|..+...+...|++++|+..|+++.+.. .+..+|..+..++...| ++++|++.++++++.... ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3455555556666666666666666655544 35555555555555555 566666666555543111 11 244
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 381 (877)
+..+...+...|++++|...|+++.+.. ++. ..+.+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------------------~~~~~ 117 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA------------------------------------------DILTK 117 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH------------------------------------------HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh------------------------------------------HHHHH
Confidence 4455555555555555555555555431 221 23344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 461 (877)
.|++++|...++++.... +.+...+..+...+...|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444555555555554432 2233445555555555555555555555555443 33455555666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 462 FEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 462 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
|+++++.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66655542 22455566666666666666666666665554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=1.9e-13 Score=152.68 Aligned_cols=374 Identities=12% Similarity=0.050 Sum_probs=250.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV---DLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
+...+.+.|++++|++.|..+...+. + ..+..+..+|...|+. ++|.+.|+++.+. +..++..|...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~--~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY--S---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--C---TGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC--H---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 45567788999999999999987751 2 2445667777778888 9999999999864 556777777756
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 239 GRSG-----YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF---KHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (877)
Q Consensus 239 ~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 310 (877)
...| ++++|+.+|++..+.|.. ..+..|...|...+ .. .++.+.+.+....|. ......|...|.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP-HSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYR 152 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG-GGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 5555 788999999999986643 26666666666544 22 345666666655443 445667777787
Q ss_pred hCCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc-
Q 002814 311 RGGLWEA----ARNLFNEMVHRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA- 382 (877)
Q Consensus 311 ~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~- 382 (877)
..+.+++ +..+++.... .+...+..|..+|.+.| +.++|++.|++..+.|.. +...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 7775444 4444444333 23448889999999999 999999999999988744 666667777777655
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---
Q 002814 383 ---GRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-Y--AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG--- 453 (877)
Q Consensus 383 ---g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--- 453 (877)
+++++|+++|++.. .| +...+..|... | ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 79999999999987 43 55667777766 4 46899999999999999876 7788888888887 55
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 002814 454 --KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NG 523 (877)
Q Consensus 454 --~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 523 (877)
++++|.+.|++.. .| +...+..|...|.. ..++++|...|++..+.| +...+..|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 9999999999988 43 77888888888877 349999999999999877 34556667766664 45
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 524 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 524 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
+.++|..+|+...+.|.. +.......+......++.++|.....+...
T Consensus 373 d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 899999999999988742 222222333333344455566665555444
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=8.4e-13 Score=142.77 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 483 (877)
..|..+...+.+.|++++|+..++++++.. +.+..+|+.+...|.+.|+ +++|+..|+++++.. +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 445666666677777777777777776654 4566777777777777775 777777777777653 2356777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-cCChhh
Q 002814 484 YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR-SATTEC 562 (877)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~ 562 (877)
|...|++++|+..|+++++... -+...|..+..++.+.|++++|+..|+++++... -+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 7777777777777777777653 3677777777777788888888888888877432 245577777777766 444455
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCC
Q 002814 563 TVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK 642 (877)
Q Consensus 563 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~ 642 (877)
|+. +.+++.|++.++ +.
T Consensus 254 A~~-------------------------------------------------------------~~el~~~~~Al~--l~ 270 (382)
T 2h6f_A 254 AVL-------------------------------------------------------------EREVQYTLEMIK--LV 270 (382)
T ss_dssp HHH-------------------------------------------------------------HHHHHHHHHHHH--HS
T ss_pred HHH-------------------------------------------------------------HHHHHHHHHHHH--HC
Confidence 420 112344444444 34
Q ss_pred C-CHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCcchhHHHHHhhcc-cc--------c-hHHHHHHHHHHH-hhcC
Q 002814 643 P-NVVTFSAILNACSRCN--SFEDASMLLEELRLFDNQVYGVAHGLLMGY-RD--------N-IWVQALSLFDEV-KLMD 708 (877)
Q Consensus 643 P-d~~t~~~ll~a~~~~g--~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~--------~-~~~~A~~~~~~~-~~~~ 708 (877)
| +...|..+..++.+.| ++++|.+.+.++ +.++....++..+...+ .. + .+++|+++++++ ++.+
T Consensus 271 P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 5 3445666666666666 466777776666 55665555544443322 11 2 358888888888 8888
Q ss_pred CCcchhHHHHHHHHHHh
Q 002814 709 SSTASAFYNALTDMLWH 725 (877)
Q Consensus 709 ~~~~~~~~~~l~~~~~~ 725 (877)
| ....+|..++..+..
T Consensus 350 P-~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 350 T-IRKEYWRYIGRSLQS 365 (382)
T ss_dssp G-GGHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHH
Confidence 8 677888877776654
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=3.5e-13 Score=134.40 Aligned_cols=193 Identities=19% Similarity=0.091 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
.+..+...+.+.|++++|+..|++..+.... +...+..+...|.+.|++++|+..|++..+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3344444444444444444444444333211 33344444444444444444444444444332 223333444444444
Q ss_pred Hc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 416 KL-----------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (877)
Q Consensus 416 ~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 484 (877)
+. |++++|+..|++..+.. +.+...+..+...|...|++++|+..|++.++.. .+...+..+..+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 43 44444444444444432 2334444444444444444444444444444433 3444444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002814 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (877)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (877)
...|++++|...|+++.+... .+...+..+...+.+.|++++|+..|++
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444444444444321 1334444444444444444444444443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=9.5e-12 Score=128.89 Aligned_cols=226 Identities=10% Similarity=-0.028 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNT 409 (877)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 409 (877)
..++..+...|.+.|++++|++.|++..+. -+...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 444455555555555555555555555542 134455555555555 556666666666555543 4555555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 410 VLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (877)
Q Consensus 410 li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 481 (877)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5556665 666666666666665543 55566666666666 666666666666666654 455566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 482 DVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 482 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66665 666677777666666653 45666666666666 677777777777766653 24556666666
Q ss_pred Hhh----cCChhhhHHHHHHHhhhhhhh
Q 002814 554 FGR----SATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 554 ~~~----~g~~~~a~~~~~~~l~~~~~~ 577 (877)
|.+ .++.++|++.++++++..++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 666 677777777777777666554
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=8.1e-12 Score=129.42 Aligned_cols=224 Identities=13% Similarity=0.028 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhCCCCCCHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYS 373 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~ 373 (877)
+..++..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44556666666777777777777777776632 55666667777777 777777777777776654 666777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 374 TMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (877)
Q Consensus 374 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 445 (877)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777664 56677777777777 778888888887777754 56667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 446 LGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (877)
Q Consensus 446 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 517 (877)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888877764 56777777788887 788888888888887764 3667777777
Q ss_pred HHHH----cCChHHHHHHHHHHHHCC
Q 002814 518 ALCK----NGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 518 ~~~~----~g~~~~A~~~~~~m~~~g 539 (877)
.|.+ .+++++|++.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7877 788888888888887754
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=3.9e-13 Score=134.00 Aligned_cols=196 Identities=16% Similarity=0.070 Sum_probs=113.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
++.+..+...+.+.|++++|+..|+.++... |.+..++..+..++.+.|++++|+..|+++++..+. +..++..+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 4455566667777777777777777777764 455567777777777777777777777777776433 566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 236 SAYGRS-----------GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNS 304 (877)
Q Consensus 236 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ 304 (877)
.++.+. |++++|+..|++..+..+. +...|..+..++...| ++++|+..|+++++.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLG-ERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcc--cchHHHHH
Confidence 777766 6666666666666553322 3455555555555666 5666666666665554 35555555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
+..+|...|++++|+..|+++++.. +.+...+..+...+.+.|++++|++.|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5566666666666666666655542 224555555555555555555555555543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=7.5e-13 Score=143.19 Aligned_cols=248 Identities=12% Similarity=0.081 Sum_probs=198.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
.+.+..+...+.+.|++++|++.|+.++..+ |.+..+|..+..++.+.|+ +++|+..|++++..... +..+|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 4566777788889999999999999999886 5667889999999999997 99999999999987654 78999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CC
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-GG 313 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g 313 (877)
..++.+.|++++|+..|+++.+.... +..+|..+..++.+.| ++++|+..|+++++.... +...|+.+..++.+ .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986544 7889999999999999 899999999999987544 77889999999988 66
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC---
Q 002814 314 LWEAA-----RNLFNEMVHRGIDQDIFTYNTLLDAICKGA--QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG--- 383 (877)
Q Consensus 314 ~~~~A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g--- 383 (877)
..++| +..|++.++.. +-+...|+.+..++.+.| ++++|++.+.++ +. ...+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 47888888764 336778888888888887 588888888887 33 2346777888888888764
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 002814 384 ------RLDDALNMFSEM-KFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 384 ------~~~~A~~~~~~m-~~~g~~pd~~~~~~li~~~ 414 (877)
.+++|+++|+++ .+.. +.....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257888888887 5542 22334455554444
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=1.2e-10 Score=134.18 Aligned_cols=430 Identities=10% Similarity=0.050 Sum_probs=305.5
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC---hHHHHHHHH
Q 002814 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK---VDLAKNIFE 217 (877)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 217 (877)
.+..+-+.+...+.+.+.|..++..+.+.+.++.|+.+|++++..- |....+|...+..-.+.|+ ++.+.++|+
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f---P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF---PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444555566677788999999999999999999999999999884 5566788889998889999 999999999
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHc---------C
Q 002814 218 TALNEGY-GNTVYAFSALISAYGRSGYC--------QEAISVFNSMKR-YNL-KPN-LVTYNAVIDACGK---------G 276 (877)
Q Consensus 218 ~~~~~g~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~ 276 (877)
+.+.... .|++..|...+....+.+.. +...++|+.... .|. .++ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9988641 37888999888776665543 334578887663 566 554 5678877765432 2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHH----------hCCCHHHHHHHHHHHHHc--CCC----------
Q 002814 277 GVDFKHVVEIFDDMLRNGVQPDRITFNS---LLAVCS----------RGGLWEAARNLFNEMVHR--GID---------- 331 (877)
Q Consensus 277 g~~~~~a~~~~~~m~~~g~~p~~~t~~~---ll~~~~----------~~g~~~~A~~~~~~m~~~--g~~---------- 331 (877)
+ +.+.+..+|++++......-..+|.. +...+. ...+++.|...+.++... ++.
T Consensus 208 ~-~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 Q-RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp H-HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred h-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3 46788999999886322211233322 211110 012344455555554321 211
Q ss_pred -----C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH-H
Q 002814 332 -----Q-----D---IFTYNTLLDAICKGA-------QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL-N 390 (877)
Q Consensus 332 -----~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~-~ 390 (877)
| + ...|...+..--..+ ..+.+..+|+++... ++-+...|-..+..+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 1 245666665443332 123456678887765 3347888888888889999999997 9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHHH
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI---------RK------------DAVTYNALLGGY 449 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~~------------~~~~~~~li~~~ 449 (877)
+|++.... ++.+...|...+....+.|++++|..+|+++++... .| ...+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999875 355666778888889999999999999999876310 13 234688888888
Q ss_pred HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 450 GKQGKYDEVRRMFEQMKAD-CVSPNLLTYSTLIDVYSKG-GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.+.|..+.|..+|.++.+. +. .....|...+..-.+. ++.+.|.++|+..++. +.-+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 8899999999999999876 21 1233443333333344 4589999999999886 34477788899998889999999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 528 AVSLLDEMTKEGIRP--NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 528 A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
|..+|++.+.....+ ....|...+..-.+.|+.+.+..+..++.+.+|+..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999998763322 235888999988999999999999999999998764
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=8.5e-13 Score=147.39 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 406 SYNTVLSIYAKLG---RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ----GKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 406 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
.+..|...|.+.| +.++|+..|++..+.| .++...+..|...|... +++++|+..|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 4555555555555 5556666666655555 44444444455555433 45666666666655 22 344444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 002814 479 TLIDV-Y--SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG-----LVESAVSLLDEMT 536 (877)
Q Consensus 479 ~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~ 536 (877)
.|... | ...+++++|.+.|++..+.| +...+..|...|. .| ++++|++.|++..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 45544 2 23556666666666666554 4555555555554 33 5666666666555
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=3.5e-12 Score=130.23 Aligned_cols=203 Identities=14% Similarity=0.030 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 450 (877)
.|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444444444555555555555444432 2234444445555555555555555555544433 234445555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002814 451 KQGKYDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (877)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (877)
..|++++|.++|+++.+.+..| +...+..+...|.+.|++++|.+.|+++.+... .+...+..+...|.+.|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554421222 234445555555555555555555555554431 23455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 530 SLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 530 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
..|+++.+.. ..+...+..+...+.+.|+.++|.+.++++++..|+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 5555555431 1233445555555555555555555555555555443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1.6e-12 Score=134.60 Aligned_cols=238 Identities=11% Similarity=0.027 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 002814 338 NTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL--DRVSYNTVLSIYA 415 (877)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~ 415 (877)
..+...+.+.|++++|++.|++..+.... +...+..+..+|...|++++|++.|++..+....+ ....|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444555555555555555555544221 33345555555566666666666666555522111 1233556666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 495 (877)
..|++++|+..|++..+.. +.+..+|..+...|...|++++|...|++..+. .+.+...|..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 345566666777777777777777777766655 23345566666623333447777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhhcCChhhhHH
Q 002814 496 IFREFKQAGLKADVVLYSALIDALCKNGL---VESAVSLLDEMTKEG-IRPN------VVTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 496 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~a~~ 565 (877)
.|+++.+... .+...+..+...+...|+ +++|...|+++.+.. -.|+ ..+|..+...|.+.|++++|+.
T Consensus 164 ~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777766542 245666666777777776 677777777766431 1122 2466677777777888888888
Q ss_pred HHHHHhhhhhhhhh
Q 002814 566 DVERDLGKQKESAN 579 (877)
Q Consensus 566 ~~~~~l~~~~~~~~ 579 (877)
.++++++..|++..
T Consensus 243 ~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 243 AWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCccHHH
Confidence 88888887776653
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.4e-12 Score=132.01 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=149.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ 233 (877)
++.+......+...|++++|+..|+.++... +.+..++..+..++...|++++|.+.|+++++....+ ...+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3445556677777888888888888887765 2334466777778888888888888888887733211 2345777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 313 (877)
+...|...|++++|++.|++..+.... +..+|..+...+...| ++++|++.|++.++.. +.+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 777788888888888888877764332 4567777777777777 7777777777776652 224555666652333445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHchhCC-CCCC------HHHHHHHHHHHHHcC
Q 002814 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ---MDLAFEIMAEMPAKN-ISPN------VVTYSTMIDGYAKAG 383 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~pd------~~~~~~li~~~~~~g 383 (877)
++++|.+.|+++++.. +.+...+..+..++...|+ +++|+..|++..+.. -.|+ ..+|..+...|.+.|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 7777777777777653 2245666666666666666 555666665554321 0011 134555555566666
Q ss_pred CHHHHHHHHHHHHHC
Q 002814 384 RLDDALNMFSEMKFL 398 (877)
Q Consensus 384 ~~~~A~~~~~~m~~~ 398 (877)
++++|.+.|++..+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666666655554
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=6e-12 Score=128.52 Aligned_cols=200 Identities=13% Similarity=-0.017 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344455555555555555555555554432 1244555555555666666666666666555442 33455555566666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
...|++++|+..++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665521122 34555566666666666666666666665542 22456666666666666677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
...|+++.+.. +.+...+..+...+.+.|+.++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 76666666543 235556666666666777777777777776653
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=6.6e-13 Score=137.57 Aligned_cols=250 Identities=14% Similarity=0.064 Sum_probs=173.4
Q ss_pred HccCCHHHHHHHHHHHHHcccc-CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 167 GNRGEWSKAIQCFAFAVKREER-KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
...|++++|++.|+.++..... .+.+..++..++.++...|++++|...|+++++.... +..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3467889999999998876321 1235667888899999999999999999999887543 6888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002814 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 325 (877)
+|+..|+++.+.... +..+|..+...+...| ++++|...|+++++. .|+......++..+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGG-RDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999998875432 5778888888888888 899999999988875 344444444555556678888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 326 VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP---NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL 402 (877)
Q Consensus 326 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 402 (877)
.... +++...+. ++..+...++.++|++.+++........ +..+|..+...|.+.|++++|...|+++.... |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7653 23333333 6666777777788888887776542110 13556666777777777777777777766552 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVC 427 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~ 427 (877)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 122234455556666665554
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=8.7e-12 Score=124.50 Aligned_cols=201 Identities=10% Similarity=-0.023 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (877)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 413 (877)
...+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44555555556666666666666655554321 244555555555555555555555555555442 2344455555555
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 414 YAKL-GRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYK 491 (877)
Q Consensus 414 ~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 491 (877)
|... |++++|...++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555421111 23445555555555555555555555554431 223445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+|..+|+++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555554432212444444444444555555555555555443
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=7.4e-13 Score=137.17 Aligned_cols=218 Identities=14% Similarity=-0.002 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 279 DFKHVVEIFDDMLRNGVQ---PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (877)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 355 (877)
++++|++.|+++++.... .+..++..+...+...|++++|...|+++++.. +.+..+|..+...|...|++++|++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 555666666665554211 123445555556666666666666666665543 2245555666666666666666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (877)
Q Consensus 356 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 435 (877)
.|+++.+... .+...+..+...|.+.|++++|++.|+++.+. .|+.......+..+...|++++|...+++.....
T Consensus 99 ~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 99 AFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 6665554321 14455555666666666666666666665554 2333333333333444556666666665544432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS---PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+++...+. ++..+...++.++|...+.++.+.... .+..+|..+...|.+.|++++|...|+++.+
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22322332 444455555555555555555432100 0023344444444444444444444444444
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=9.9e-12 Score=124.09 Aligned_cols=200 Identities=10% Similarity=-0.034 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 379 (877)
..+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|++.|+++.+... .+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 445555555555666666666665555542 22355555555555566666666666655554321 2445555555555
Q ss_pred HHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 380 AKA-GRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (877)
Q Consensus 380 ~~~-g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 457 (877)
... |++++|+..++++.+.+..|+ ...+..+...+...|++++|+..++++.+.. +.+...+..+...|.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 666666666655554211222 3445555555555666666666665555443 3345555555555556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 458 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
|...|+++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666665555432113445555555555555666666555555544
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=2.8e-12 Score=130.03 Aligned_cols=199 Identities=12% Similarity=0.086 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (877)
Q Consensus 334 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 413 (877)
...|..+...+.+.|++++|+.+|+++.+... .+...+..+...|.+.|++++|++.|+++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 33444455555555555555555555554322 245555555555555666666666665555442 3345555555566
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (877)
Q Consensus 414 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 493 (877)
|...|++++|+..++++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655543 3445555566666666666666666666655542 22455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 494 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 66666665543 22455666666666666666666666666655
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=3.4e-12 Score=129.35 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|+..++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45677888889999999999999999998864 5578889999999999999999999999998775 567899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
.|...|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998863 4478889999999999999999999999998865 3478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
|+..|+++.+.. ..+..++..+..+|.+.|++++|+..++++++..|+...
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 999999998753 335778999999999999999999999999999887653
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=5.8e-10 Score=128.64 Aligned_cols=375 Identities=10% Similarity=0.030 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 002814 173 SKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY---CQEAIS 249 (877)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 249 (877)
.+.+..|+..+..+ +.+...|..++..+.+.+.++.++.+|++++.. ++.....|...+..-.+.|. ++.+..
T Consensus 49 ~d~i~~lE~~l~~n---p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ---PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHC---cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34456677777775 567789999999999999999999999999987 45578899999999889999 999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh------
Q 002814 250 VFNSMKRYN-LKPNLVTYNAVIDACGKGGVDF--------KHVVEIFDDMLR-NGV-QPD-RITFNSLLAVCSR------ 311 (877)
Q Consensus 250 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~--------~~a~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~~------ 311 (877)
+|++..... ..|++..|...+.-..+.+ +. +.+.++|+.++. .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 999998753 1378888888877655433 32 345578887764 465 554 4567777665432
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 312 ---GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 312 ---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 388 (877)
.++++.+.++|++++......-..+|......--..+. ..+.+++.+. ..+++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHH
Confidence 34577888999888863211112333322221111111 0111111110 1122223
Q ss_pred HHHHHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCC
Q 002814 389 LNMFSEMKFL--GIG---------------L-----D---RVSYNTVLSIYAKLG-------RFEEALLVCKEMESSGIR 436 (877)
Q Consensus 389 ~~~~~~m~~~--g~~---------------p-----d---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~ 436 (877)
...+.++... ++. | + ...|...+..--..+ ..+....+|++.+..- +
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-C 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-C
Confidence 3333332110 100 0 0 122333333222211 1233455666666542 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------C
Q 002814 437 KDAVTYNALLGGYGKQGKYDEVR-RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL---------K 506 (877)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~ 506 (877)
-+...|...+..+.+.|+.++|. ++|++.... ++.+...|-..+....+.|++++|.++|+++++... .
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 56777777777777777777775 777777654 344566666677777777777777777777765310 1
Q ss_pred CC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhc-CChhhhHHHHHHHhh
Q 002814 507 AD------------VVLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDLG 572 (877)
Q Consensus 507 p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~l~ 572 (877)
|+ ...|...+....+.|..+.|..+|.++++. +. .....|...+..-.+. ++.+.|..+++++++
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 21 235666666666777777777777777764 21 1222333222222222 336666666666666
Q ss_pred hhhhh
Q 002814 573 KQKES 577 (877)
Q Consensus 573 ~~~~~ 577 (877)
.++..
T Consensus 499 ~~p~~ 503 (679)
T 4e6h_A 499 YFATD 503 (679)
T ss_dssp HHTTC
T ss_pred HCCCc
Confidence 55543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=2.9e-12 Score=141.04 Aligned_cols=304 Identities=14% Similarity=0.133 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCCC-
Q 002814 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN----LVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----GVQP- 297 (877)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~----g~~p- 297 (877)
....+..+...+...|++++|+..|+++.+.+.. + ..+|..+...+...| ++++|...+++++.. +-.+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHH
Confidence 4445555566666666666666666666553221 2 234555555555566 666666666555431 1000
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 376 (877)
...++..+...|...|++++|...+++..+.... .+ ......++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------ccchHHHHHHHH
Confidence 1223444444445555555555555444442100 00 000123455556
Q ss_pred HHHHHcCC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 377 DGYAKAGR--------------------LDDALNMFSEMKFL----GIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 377 ~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~-pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
..|...|+ +++|++.+++.... +.. ....++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666 66666666654321 101 112456677777777888888888777765
Q ss_pred HCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 432 SSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PN----LLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (877)
Q Consensus 432 ~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 501 (877)
+..- .++ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...|++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4210 111 336777788888888888888888877643100 11 4577788888889999999999888876
Q ss_pred HCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhh
Q 002814 502 QAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 502 ~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 563 (877)
+.... .+ ..++..+...|.+.|++++|...|++..+. +..+. ..++..+...+...|+....
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 53111 12 557788888999999999999999987643 22222 33677777788777776543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=6.2e-12 Score=138.89 Aligned_cols=270 Identities=14% Similarity=0.078 Sum_probs=158.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHchhC----C-CCCCHHHHHHHH
Q 002814 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAK----N-ISPNVVTYSTMI 376 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~pd~~~~~~li 376 (877)
...+...|++++|+..|+++++.+.. +. .+|..+...|...|++++|++.|++..+. + ......++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33444444445555444444443211 11 23444444444555555555544443321 0 011223445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHC-
Q 002814 377 DGYAKAGRLDDALNMFSEMKFL----G-IGLDRVSYNTVLSIYAKLGR-----------------FEEALLVCKEMESS- 433 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~----g-~~pd~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~- 433 (877)
..|...|++++|+..|++..+. + ......++..+...|...|+ +++|+..+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554332 1 01122345556666666666 66666666654331
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002814 434 ---GI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 434 ---g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (877)
+. .....++..+...|...|++++|...|++..+... ..+ ..++..+...|...|++++|...|++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 10 11234666777778888888888888877765310 011 2367778888888889988888888776531
Q ss_pred CC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 505 LK-----ADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 505 ~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
.. ....++..+...|...|++++|...|++..+. +..+. ..++..+..+|.+.|++++|+..+++++...
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 10 11467778888899999999999999888753 11111 3377788888999999999999998888875
Q ss_pred hh
Q 002814 575 KE 576 (877)
Q Consensus 575 ~~ 576 (877)
.+
T Consensus 374 ~~ 375 (411)
T 4a1s_A 374 XX 375 (411)
T ss_dssp CH
T ss_pred hh
Confidence 54
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=2.5e-12 Score=141.60 Aligned_cols=304 Identities=17% Similarity=0.107 Sum_probs=195.3
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-C
Q 002814 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSALISAYGRSGYCQEAISVFNSMKRY----NLKP-N 262 (877)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 262 (877)
.....+......+...|++++|...|+++++...... ..++..+...|...|++++|+..|++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445667788899999999999999999998754321 467888999999999999999999987542 2112 2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCC--------------------HHH
Q 002814 263 LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-PD----RITFNSLLAVCSRGGL--------------------WEA 317 (877)
Q Consensus 263 ~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~--------------------~~~ 317 (877)
..++..+...+...| ++++|+..+++++..... .+ ..++..+...|...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 457788888899999 999999999998753110 12 3356667777777777 666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
|...+++..+. +..... ......++..+...|...|++++|+..+++..+
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTC--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccC--cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666554432 111100 000123445555555555566555555555443
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 398 LGI-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 398 ~g~-~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
... .++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|.+.|++++|...|++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 200 011 23566666677777777777777766543210 011 45667777888888888888888887764
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCh
Q 002814 468 DCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GL-KADVVLYSALIDALCKNGLV 525 (877)
Q Consensus 468 ~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~ 525 (877)
... ..+ ..++..+...|...|++++|.+.|++..+. +. .....++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 310 011 456778888888899999999888887642 11 11234556666666666655
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=6e-12 Score=139.02 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=59.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCC-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNE----G-YGNTVYAFS 232 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~~~~~ 232 (877)
+..+...+...|++++|+..|+.++......+. ...++..+..+|...|++++|...|++++.. + ......++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 444666677777777777777777776421100 0135666777777777777777777776542 1 011234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
.+...|...|++++|+..|++..+
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666666543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=2.3e-10 Score=120.69 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 002814 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV-TYNALLGGYGKQGKYDEVRRMFEQ 464 (877)
Q Consensus 386 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 464 (877)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5666666666552112234456666666666666666666666666532 12232 566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC
Q 002814 465 MKADCVSPNLLTYSTLIDVYS-KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRP 542 (877)
Q Consensus 465 m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 542 (877)
.++.. +.+...|...+.... ..|++++|..+|++.++... -+...|..++..+.+.|++++|..+|++.++.. +.|
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 66542 223334433333222 25677777777776665432 256666667777777777777777777776642 343
Q ss_pred --CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 543 --NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 543 --~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
....|..++..+.+.|+.++|..++.++++.+|++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 34566666666677777777777777777766654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.7e-11 Score=130.58 Aligned_cols=205 Identities=14% Similarity=0.062 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGI-GLD----RVSYNTVLSIYAKLGR--------------------FEEALL 425 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~--------------------~~~A~~ 425 (877)
++..+...|...|++++|.+.+++..+... ..+ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555554432200 011 2244555555555566 666666
Q ss_pred HHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 002814 426 VCKEMESS----GI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQ 495 (877)
Q Consensus 426 ~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~ 495 (877)
.+++..+. +. .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554321 10 11134566667777777787777777777654210 011 2366777778888888888888
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhhHH
Q 002814 496 IFREFKQAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 496 ~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~ 565 (877)
.+++..+.... .+ ..++..+...|...|++++|...++++.+. +-.+. ..++..+...|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88777642110 11 456777788888888888888888887643 11111 3367778888888888888888
Q ss_pred HHHHHhhhhh
Q 002814 566 DVERDLGKQK 575 (877)
Q Consensus 566 ~~~~~l~~~~ 575 (877)
.+++++....
T Consensus 325 ~~~~a~~~~~ 334 (338)
T 3ro2_A 325 FAEKHLEISR 334 (338)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 8888877544
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=5.4e-10 Score=117.84 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002814 173 SKAIQCFAFAVKREERKNDQGKLASAMISILG-------RLGKV-------DLAKNIFETALNEGYGNTVYAFSALISAY 238 (877)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 238 (877)
++|+.+|++++... |.+..+|..++..+. +.|++ ++|+.+|+++++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 68888999998875 455667777777765 35776 88999999988731223677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCCCH
Q 002814 239 GRSGYCQEAISVFNSMKRYNLKPN-LV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS-RGGLW 315 (877)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~ 315 (877)
.+.|++++|..+|+++.+. .|+ .. .|..+...+.+.| ++++|..+|+++++... .+...|...+.... ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 8899999999999988874 343 33 7888888888888 88888888888887643 23444443333322 36888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISP--NVVTYSTMIDGYAKAGRLDDALNMF 392 (877)
Q Consensus 316 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--d~~~~~~li~~~~~~g~~~~A~~~~ 392 (877)
++|..+|++.++.. +.+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887753 3367778888888888888888888888877752 333 4567777777777788888888888
Q ss_pred HHHHHC
Q 002814 393 SEMKFL 398 (877)
Q Consensus 393 ~~m~~~ 398 (877)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=2e-11 Score=130.14 Aligned_cols=94 Identities=17% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHccccCCC-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 002814 161 FLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNE----GYG-NTVYAFSAL 234 (877)
Q Consensus 161 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~l 234 (877)
.....+...|++++|+..|+.++......+. ...++..+...+...|++++|.+.++++... +.. ....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3445555566666666666666554311000 0234455555555555555555555554332 000 013344444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 002814 235 ISAYGRSGYCQEAISVFNSM 254 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m 254 (877)
...|...|++++|+..|++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~a 109 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRH 109 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 44444445555554444444
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=1.8e-10 Score=111.19 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 334444444444444444444444433332 2233333444444444444444444444433322 22333333333444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (877)
...++++.|...+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444433321 11233333444444444444444444444433321 13333444444444444444444
Q ss_pred HHHHHHH
Q 002814 530 SLLDEMT 536 (877)
Q Consensus 530 ~~~~~m~ 536 (877)
+.|++.+
T Consensus 162 ~~~~~al 168 (184)
T 3vtx_A 162 KYFKKAL 168 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=1.4e-10 Score=111.96 Aligned_cols=172 Identities=14% Similarity=0.069 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
+...|..+...|.+.|++++|+..|++.++.. +.+..++..+...|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 67789999999999999999999999999876 6689999999999999999999999999998763 446788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhh
Q 002814 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562 (877)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 562 (877)
.+...++++.|.+.+.+..+... -+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988653 478899999999999999999999999999853 2356789999999999999999
Q ss_pred hHHHHHHHhhhhhhhh
Q 002814 563 TVDDVERDLGKQKESA 578 (877)
Q Consensus 563 a~~~~~~~l~~~~~~~ 578 (877)
|+..++++++.+|++.
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999988764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=7.8e-12 Score=131.91 Aligned_cols=243 Identities=16% Similarity=0.106 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 002814 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKAD-------CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA------G- 504 (877)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------g- 504 (877)
..++..+...|...|++++|..+|+++.+. .......++..+...|...|++++|...|+++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555566666666666666666665542 11223445566666666666666666666666542 1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.......+..+...|...|++++|+..|+++.+. +-.|+ ..++..+...+...|++++|+..+++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 182 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI---- 182 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence 1123456677777788888888888888877653 22232 336777777888888888777665554432
Q ss_pred hhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 002814 578 ANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACS 656 (877)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~ 656 (877)
+++... +..| ...++..+..+|.
T Consensus 183 -------------------------------------------------------~~~~~~-~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 183 -------------------------------------------------------YQTKLG-PDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp -------------------------------------------------------HHHTSC-TTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 221100 1122 2345777888888
Q ss_pred cCCCHHHHHHHHHHHHhcCCc---------chhHHHHH--hh----cc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 002814 657 RCNSFEDASMLLEELRLFDNQ---------VYGVAHGL--LM----GY-RDNIWVQALSLFDEVKLMDSSTASAFYNALT 720 (877)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~---------~~~~~~~l--~~----~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 720 (877)
..|++++|.++|+++....+. ........ +. .+ ..+.+.+|...++++....+ ....+|..++
T Consensus 207 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la 285 (311)
T 3nf1_A 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLG 285 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHH
Confidence 889999999988887753221 11111111 00 00 23455567777777776666 6788899999
Q ss_pred HHHHhcCchhhHHHHHHHhhhh
Q 002814 721 DMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 721 ~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
.+|.+.|++++|..++.++.+.
T Consensus 286 ~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 286 ALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.1e-10 Score=131.14 Aligned_cols=225 Identities=11% Similarity=-0.020 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
++++++.+++..... ..+...+..+...+...|++ ++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 22555566666666666666 66666666666543 2235555555555555555555555555
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 002814 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (877)
Q Consensus 359 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 438 (877)
+..+.. |+...+..+...|...+.- ....+.|++++|+..|++..+.. +.+
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~--------------------------~~~~~~g~~~~A~~~~~~al~~~-p~~ 212 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTD--------------------------SGDEHSRHVMDSVRQAKLAVQMD-VLD 212 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCS--------------------------CHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccC--------------------------ChhhhhhhHHHHHHHHHHHHHhC-CCC
Confidence 555442 3444444455555444000 00000044455555555444433 334
Q ss_pred HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002814 439 AVTYNALLGGYGKQ--------GKYDEVRRMFEQMKADCVS--PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (877)
Q Consensus 439 ~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (877)
...|..+..+|... |++++|+..|++.++.... -+...|..+..+|...|++++|.+.|++..+... -+
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~ 291 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AW 291 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 45555555555555 5666666666666654110 2566666677777777777777777777666542 25
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 509 VVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
...+..+..++...|++++|++.+.++.
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5566777777777777777777666553
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=5.2e-11 Score=133.71 Aligned_cols=217 Identities=13% Similarity=0.001 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV-DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISV 250 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 250 (877)
+++|++.++...... +....++..+..++...|++ ++|++.|+++++.... +..+|..+...|.+.|++++|++.
T Consensus 84 ~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555444332 33445555566666666666 6666666666554322 455666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------C
Q 002814 251 FNSMKRYNLKPNLVTYNAVIDACGKG---------GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG--------G 313 (877)
Q Consensus 251 ~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g 313 (877)
|++..+. .|+..++..+...+... | ++++|++.|+++++.... +...|..+..+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSR-HVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHH-HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhh-hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 6666553 24445555555555555 5 555555555555543221 344444444444444 4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (877)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 393 (877)
++++|+..|++.++.. |. ..-+...|..+..+|...|++++|++.|+
T Consensus 236 ~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD--RK-------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHHHHHHC--GG-------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CC-------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444432 10 00144455555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+..+.. +-+...+..+..++...|++++|+..+.++
T Consensus 283 ~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 283 QAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 554442 223444555555555555555555544433
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=4.2e-11 Score=130.85 Aligned_cols=162 Identities=10% Similarity=0.017 Sum_probs=76.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC--C----CCCHHHHH
Q 002814 305 LLAVCSRGGLWEAARNLFNEMVHRG--IDQ---DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN--I----SPNVVTYS 373 (877)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~m~~~g--~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~pd~~~~~ 373 (877)
....+...|++++|...|++..+.- ... ...++..+...|...|++++|++.+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445556666666666666665430 010 13455556666666666666666655543210 0 00123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 002814 374 TMIDGYAKAGRLDDALNMFSEMKFLGI-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESS----GI-RKDAVTYN 443 (877)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~ 443 (877)
.+...|...|++++|++.|++..+..- ..+ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555566666666655555442200 011 123444555555555555555555544431 11 12233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 002814 444 ALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
.+...|.+.|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44445555555555555554443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=2.4e-10 Score=124.85 Aligned_cols=228 Identities=10% Similarity=-0.089 Sum_probs=109.8
Q ss_pred HccCCHHHHHHHHHHHHHccccC--CChHHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCC----
Q 002814 167 GNRGEWSKAIQCFAFAVKREERK--NDQGKLASAMISI--LGRLGKVDLAK-----------NIFETALNEGYGNT---- 227 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~---- 227 (877)
.+.+++++|..+++.+...-... ..+...|..++.. ..-.++++.+. ++++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 45788999999998876643221 2222222333221 11223333333 55555433210000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-C----
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNL-KP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-P---- 297 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~-p---- 297 (877)
...+......+...|++++|+..|++..+.-. .+ ...+|..+...+...| ++++|+..+++.++.-.. +
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchH
Confidence 11222245556677777777777777654200 11 2345666666666666 677777776666542100 0
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHchh-----CCCC
Q 002814 298 -DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QD----IFTYNTLLDAICKGAQMDLAFEIMAEMPA-----KNIS 366 (877)
Q Consensus 298 -~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~ 366 (877)
...+++.+...|...|++++|...|++.++.... .+ ..++..+..+|...|++++|++.|++..+ ....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1234555556666666666666666655432100 01 12444455555555555555555554443 1101
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 367 pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
....++..+...|.+.|++++|.+.+++.
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12333444444444444444444444443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=2.5e-11 Score=128.04 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=73.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccc-----cCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-C
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREE-----RKNDQGKLASAMISILGRLGKVDLAKNIFETALNE------GY-G 225 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~-~ 225 (877)
.+..+...+...|++++|+.+|+.++.... ..+....++..+..+|...|++++|...|++++.. +. .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 455567777777777777777777766310 12334455666677777777777777777766543 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002814 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (877)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~ 291 (877)
....++..+...|...|++++|+..|+++.+. +-.| ...++..+...+...| ++++|+++|++++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 12445556666666666666666666665532 1111 1233444444444444 4444444444444
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=6e-09 Score=113.12 Aligned_cols=269 Identities=10% Similarity=-0.016 Sum_probs=159.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCC--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFETALNEGYG-NT----VYAFSAL 234 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~l 234 (877)
....+...|++++|+..++.++........ ...++..+...+...|++++|.+.++++...... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444566789999999999988876421111 1124566777888889999999998887653110 11 2345667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRY----NLK--P-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ----PDRITFN 303 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~----p~~~t~~ 303 (877)
...+...|++++|+..+++..+. +.. | ...++..+...+...| ++++|...+++.+..... ....++.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 77888888888888888877542 211 2 2345566667777788 888888888887753221 1234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHchhCCCCC---CHHHHHH
Q 002814 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQ-D-IFTYN----TLLDAICKGAQMDLAFEIMAEMPAKNISP---NVVTYST 374 (877)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~ 374 (877)
.+...+...|++++|...+++.....-.+ + ..... .++..+...|++++|...+++........ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 67777778888888888887776531111 1 11111 23344667777888877777766543211 1224455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 375 MIDGYAKAGRLDDALNMFSEMKFL----GIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
+...+...|++++|...+++.... |...+. ..+..+..++...|+.++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 566666667777766666655432 111111 133333444445555555555544443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=4.5e-09 Score=114.12 Aligned_cols=269 Identities=10% Similarity=0.011 Sum_probs=145.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHchhCCC-CCC----HHHHHHHHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-SPN----VVTYSTMIDG 378 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~ 378 (877)
.+...|++++|...+++..+.....+. .+++.+...+...|++++|.+.+++...... ..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344455555555555555443211111 1334444555555555555555555432100 001 1224445555
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 002814 379 YAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR----KDAVTYNALLG 447 (877)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~----g~~--p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~ 447 (877)
|...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..-. ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666655432 111 1 1234455566666677777777777665543211 12345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSP-N-LLTYS----TLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALIDA 518 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p-~-~~t~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~ 518 (877)
.+...|++++|...+++.......+ + ..... ..+..+...|++++|...+++..+..... ....+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 6777777777777777665421111 1 11111 22334667777777777777665432111 12345666777
Q ss_pred HHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhh
Q 002814 519 LCKNGLVESAVSLLDEMTKE----GIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (877)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (877)
+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++++.....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 77888888888888777542 222222 25556667778888888888888887776543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=2.7e-09 Score=102.39 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
..+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3455555666666666666666666655422 245555566666666666666666666655442 33444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 494 (877)
...|++++|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554433 3344444555555555555555555555544431 223344444444444444444444
Q ss_pred HHHHHHH
Q 002814 495 QIFREFK 501 (877)
Q Consensus 495 ~~~~~m~ 501 (877)
+.++++.
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=2.4e-09 Score=102.78 Aligned_cols=168 Identities=17% Similarity=0.119 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
.+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555556666655555554433 3345555556666666666666666666655542 234555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHH
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVD 565 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 565 (877)
..|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+.. ..+..++..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 2355666666666666677777777776666542 2244566666667777777777777
Q ss_pred HHHHHhhhhhhh
Q 002814 566 DVERDLGKQKES 577 (877)
Q Consensus 566 ~~~~~l~~~~~~ 577 (877)
.++++++..++.
T Consensus 166 ~~~~~~~~~~~~ 177 (186)
T 3as5_A 166 HFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHcCCCc
Confidence 777776666554
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=8.6e-10 Score=128.84 Aligned_cols=165 Identities=14% Similarity=0.124 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
++.+..+...+.+.|++++|++.|+++++.. +.+..++..+..+|.+.|++++|++.|+++++.... +..+|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4455666666666777777777777766664 344556666666777777777777777766665432 466666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.+|.+.|++++|++.|++..+.... +..+|+.+..++.+.| ++++|++.|++.++.... +...+..|..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g-~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSG-NIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 6666667777777776666654322 4556666666666666 666666666666654322 455566666666666666
Q ss_pred HHHHHHHHHHHH
Q 002814 316 EAARNLFNEMVH 327 (877)
Q Consensus 316 ~~A~~~~~~m~~ 327 (877)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=3.8e-09 Score=114.96 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKF-----LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKDAVT 441 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~ 441 (877)
++..+..+|...|++++|++.|++..+ .. +....++..+...|.+.|++++|...+++..+.. -+.....
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555555555555555443 21 2224455555556666666666666665554421 1112333
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 442 YNALLGGYGKQGK---YDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 442 ~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+..+...|...|+ +.+|+..+++. +..+ ....+..+...|.+.|++++|...|++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455555555 55555555542 1111 123445566666666666666666666544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=1.3e-09 Score=127.22 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=135.0
Q ss_pred CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
|.+..+++.+..+|.+.|++++|++.|+++++.... +..+|+.|..+|.+.|++++|++.|++..+.... +..+|+.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 556778888888999999999999999998887543 6788888888899999999999999888875432 57788888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002814 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (877)
Q Consensus 270 l~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 349 (877)
..++.+.| ++++|++.|++.++.... +...|+.+..+|.+.|++++|++.|++.++.. +-+...|..|..+|...|+
T Consensus 84 g~~l~~~g-~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQ-DVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 88888888 888888888888876433 56778888888888888888888888888764 2357788888888888888
Q ss_pred HHHHHHHHHHchh
Q 002814 350 MDLAFEIMAEMPA 362 (877)
Q Consensus 350 ~~~A~~~~~~m~~ 362 (877)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=7.9e-09 Score=103.42 Aligned_cols=214 Identities=8% Similarity=-0.002 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIID 552 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~ 552 (877)
...+..+...|.+.|++++|...|++.++....++...+..+..++.+.|++++|++.|++..+. .|+. .+|..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34444444444445555555555554444332234444444444555555555555555555442 2322 24444555
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
++...|++++|+..++++++..|++..+. ..+...+..++.. ....+++++|+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~~~~~~~g~~--------~~~~~~~~~A~~~ 139 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIE-----------------KLYAIYYLKEGQK--------FQQAGNIEKAEEN 139 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHH-----------------HHHHHHHHHHHHH--------HHHTTCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHH-----------------HHHHHHHHHHhHH--------HHHhccHHHHHHH
Confidence 55555555555555555555444432110 0111111111100 1112377889999
Q ss_pred HHHHHHCCCCCC--H-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCC
Q 002814 633 FQKMHKLKIKPN--V-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 633 ~~~m~~~g~~Pd--~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~ 709 (877)
|++.++ +.|+ . ..+..+..+|.. .+..+++++....+........ ......+.+++|+..++++++++|
T Consensus 140 ~~~al~--~~p~~~~~~~~~~l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 140 YKHATD--VTSKKWKTDALYSLGVLFYN-----NGADVLRKATPLASSNKEKYAS-EKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHTT--SSCHHHHHHHHHHHHHHHHH-----HHHHHHHHHGGGTTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--cCCCcccHHHHHHHHHHHHH-----HHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 998887 5676 3 456777777754 4455566666554433221111 111245678999999999999999
Q ss_pred CcchhHHHHHHHHH
Q 002814 710 STASAFYNALTDML 723 (877)
Q Consensus 710 ~~~~~~~~~l~~~~ 723 (877)
.+..+...|..+.
T Consensus 212 -~~~~~~~~l~~i~ 224 (228)
T 4i17_A 212 -NRTEIKQMQDQVK 224 (228)
T ss_dssp -TCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5666666655443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=8.4e-09 Score=103.23 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (877)
Q Consensus 367 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 446 (877)
.|...+..+...|...|++++|++.|++..+....++...+..+..++...|++++|+..|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 36788889999999999999999999999887533788888889999999999999999999999876 55678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 002814 447 GGYGKQGKYDEVRRMFEQMKADCVSPNL-------LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALI 516 (877)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 516 (877)
..|.+.|++++|...|++.++.. +.+. ..|..+...+...|++++|.+.|+++++.. |+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 99999999999999999998863 2344 557888888999999999999999998763 44 56777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhh
Q 002814 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESAN 579 (877)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 579 (877)
.+|...| ..+++++...+ ..+...|.... ....+.+++|+..++++++..|++..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 7776554 44566666543 22444554443 33456789999999999999887653
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=8.3e-09 Score=112.28 Aligned_cols=231 Identities=9% Similarity=0.021 Sum_probs=133.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCC---ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----C-CCHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKN---DQGKLASAMISILGRLGKVDLAKNIFETALNEGY-----G-NTVYAFS 232 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-----~-~~~~~~~ 232 (877)
....+...|++++|+..|+.++......+ ....++..+..+|...|+++.|...++++++... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44555677888888888888776532212 2345667777778888888888887777765211 1 1244666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRY----NLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITF 302 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~g~~p~~~t~ 302 (877)
.+...|...|++++|++.|++..+. +-.+ ...+++.+...+...| ++++|++.|++.+. .... ...++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 7777777777777777777766541 1000 1235566666666666 67777777776665 3222 24556
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHchhCCCCCCHHHHHHH
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRG----IDQDIFTYNTLLDAICKGAQ---MDLAFEIMAEMPAKNISPNVVTYSTM 375 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~pd~~~~~~l 375 (877)
..+...|.+.|++++|...+++..+.. -......+..+...|...++ +++|+..+++.... ......+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHHHHHH
Confidence 666666667777777777776666531 11112334444455555555 55555555542210 0112334455
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002814 376 IDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~ 396 (877)
...|.+.|++++|.+.|++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555666666666666655543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=2.2e-09 Score=111.06 Aligned_cols=230 Identities=11% Similarity=0.070 Sum_probs=141.4
Q ss_pred cCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQ-------AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSIID 552 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~li~ 552 (877)
.|++++|..+|++..+ ........++..+...|...|++++|+..|+++.+. +-.|. ..++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555555444433 121224567788888888899999999988888753 22233 347889999
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHH
Q 002814 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 632 (877)
.|...|++++|+..+++++........ .... .....+..+..++. ..+++++|+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~---~~~~~~~~la~~~~---------------~~g~~~~A~~~ 149 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLG------KFHP---DVAKQLNNLALLCQ---------------NQGKAEEVEYY 149 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHC------TTCH---HHHHHHHHHHHHHH---------------TTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcC------CCCh---HHHHHHHHHHHHHH---------------HcCCHHHHHHH
Confidence 999999999999999999887422100 0000 00011122222222 22478899999
Q ss_pred HHHHHHC------CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---------CcchhHHHHHhhc-----c--
Q 002814 633 FQKMHKL------KIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD---------NQVYGVAHGLLMG-----Y-- 689 (877)
Q Consensus 633 ~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~---------~~~~~~~~~l~~~-----~-- 689 (877)
|+++.+. +-.|+ ..++..+..+|...|++++|.++|+++.+.. +....+....... .
T Consensus 150 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 9999863 22443 4568889999999999999999999987542 1111111111100 0
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
....+.++...++.+....+ .....+..|+.+|...|++++|..++.++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 230 DSAPYGEYGSWYKACKVDSP-TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp C------------CCCCCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23345666666665544444 5577899999999999999999999988764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=5.4e-09 Score=109.17 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC----
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KD----AVTYNALLGGYGKQ-GKYDEVRRMFEQMKADCVS-PN---- 473 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~---- 473 (877)
.+|+.+..+|.+.|++++|+..|++..+.... .+ ..+++.+...|... |++++|+..|++.++.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555555555666666665555554432100 01 34566777788885 8888888888877653110 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--
Q 002814 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV------VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-- 545 (877)
Q Consensus 474 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 545 (877)
..++..+...|.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+. .|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 346778888888889999999998888875433221 15677777888899999999999888763 34322
Q ss_pred ----HHHHHHHHHh--hcCChhhhHHHHHHHhhhhhhh
Q 002814 546 ----TYNSIIDAFG--RSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 546 ----~~~~li~~~~--~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.+..++.+|. ..+++++|+..+++++...|..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 3444556664 4567888888777777665543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=2.9e-09 Score=110.14 Aligned_cols=156 Identities=16% Similarity=0.091 Sum_probs=80.1
Q ss_pred hCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC------CC-CCCHHHHHHHH
Q 002814 311 RGGLWEAARNLFNEMVHR-------GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK------NI-SPNVVTYSTMI 376 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~~~~~li 376 (877)
..|++++|+..|++.++. ..+....++..+...|...|++++|++.|++..+. +- .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666555442 11123455666666667777777777766665532 11 11234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHH
Q 002814 377 DGYAKAGRLDDALNMFSEMKFL------G-IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS------G-IRKDAVTY 442 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~------g-~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~ 442 (877)
..|...|++++|++.|++.... . .+....++..+...|...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666666666666655432 0 0112334455555555555555555555555432 0 01123344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
..+...|.+.|++++|..+|+++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555544
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=2e-07 Score=95.40 Aligned_cols=272 Identities=10% Similarity=0.005 Sum_probs=173.5
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002814 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEA 423 (877)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 423 (877)
..-.|++..++.-...+... .....-.-+.++|...|+++... .-.|....+..+...+ . ++ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~-~~---a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-D-TK---N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-T-TT---C
T ss_pred HHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-c-cc---H
Confidence 44567777777644443321 12333444567777777766421 1234444444444333 2 22 6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 424 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
+..|+++.+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77787777665 55666667888889999999999999998876643 23577788888999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 503 AGLKA-----DVVLYSALIDA--LCKNG--LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 503 ~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
. .| +..+...|+.+ ....| ++.+|+.+|+++.+. .|+..+-..++.++.+.|++++|...++..++.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 35 24555555555 33334 899999999998764 455444445555788888888887765544443
Q ss_pred hhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 002814 574 QKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAIL 652 (877)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll 652 (877)
.|+-. + +.+..| |..++..++
T Consensus 241 ~p~~~--------------------------------------------------------~--k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 241 YYSVE--------------------------------------------------------Q--KENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHTT--------------------------------------------------------T--CHHHHSSHHHHHHHHH
T ss_pred ccccc--------------------------------------------------------c--cccCCCCCHHHHHHHH
Confidence 22200 0 000124 344454566
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhc
Q 002814 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLM 707 (877)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 707 (877)
......|+ +|.++++++.+.+|++..+. ++.+....|+++...
T Consensus 263 ~l~~~lgk--~a~~l~~qL~~~~P~hp~i~----------d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTNQLVKLDHEHAFIK----------HHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHHTTC--TTHHHHHHHHHTTCCCHHHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHhCh--HHHHHHHHHHHhCCCChHHH----------HHHHHHHHHHHHHHH
Confidence 56666676 88999999999888876553 456677777776543
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=3.8e-07 Score=94.34 Aligned_cols=223 Identities=9% Similarity=0.027 Sum_probs=169.6
Q ss_pred HccCCH-HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 002814 167 GNRGEW-SKAIQCFAFAVKREERKNDQGKLASAMISILGRLG--KVDLAKNIFETALNEGYGNTVYAFSALISAY----G 239 (877)
Q Consensus 167 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~ 239 (877)
.+.|.+ ++|+++++.++..+ |....+++.-..++...| +++++++.++.++...+. +..+|+.-...+ .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 334444 68999999999886 566778888888888888 999999999999887654 667787766666 5
Q ss_pred hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 240 RS---GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 240 ~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
.. +++++++++++++.+...+ |-.+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+....++.+.+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred hccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 55 7889999999999886554 7888888887777777 777 889999999887654 77778777777777776
Q ss_pred ------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCH
Q 002814 315 ------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL-AFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRL 385 (877)
Q Consensus 315 ------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~ 385 (877)
++++++.+++++.... -|...|+.+-..+.+.|+..+ +.++.+++.+.+ -..+...+..+.++|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 8888888888887753 478888888888888887444 445666655432 123667777777777777888
Q ss_pred HHHHHHHHHHHH
Q 002814 386 DDALNMFSEMKF 397 (877)
Q Consensus 386 ~~A~~~~~~m~~ 397 (877)
++|+++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888877765
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=4.5e-08 Score=102.10 Aligned_cols=132 Identities=7% Similarity=0.058 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCCC-C----
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLK-PN----LVTYNAVIDACGKG-GVDFKHVVEIFDDMLRNGVQP-D---- 298 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~-g~~~~~a~~~~~~m~~~g~~p-~---- 298 (877)
+|+.+..+|.+.|++++|+..|++..+.... .+ ..+|+.+...|... | ++++|+..|++.++..... +
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4444444444444444444444444321000 01 23444455555553 5 5555555555554321000 0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI------FTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
..++..+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234555555555566666666666555554221111 1345555555556666666666665554
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=4.2e-07 Score=92.95 Aligned_cols=247 Identities=9% Similarity=-0.042 Sum_probs=156.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 387 (877)
-..-.|.+..++.- ..+...........-+.++|...|+++.. + .-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~------~---~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ------D---PTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC------C---SSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC------C---CCCHHHHHHHHHHHHh-ccc----
Confidence 34445677666652 22222122233333445666666665531 1 1223433443333333 222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 388 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45666666777888888888888888888776552 1356677778888888899999999998887
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 467 ADCVSP-----NLLTYSTLIDVY--SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 467 ~~g~~p-----~~~t~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 245555565553 3234 8889999999987653 4533444445578889999999999987654
Q ss_pred C-----CC---CC-CHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 538 E-----GI---RP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 538 ~-----g~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
. .. .| |..++..+|......|+ +|.+++.++.+..|+.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2 01 24 44466577766666776 78888888888887765
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=3.8e-08 Score=96.80 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHH----------------HHHHHHhcCChHHHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASA----------------MISILGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 220 (877)
+.+......+.+.|++++|+..|+.++... |.+..++.. +..+|.+.|++++|+..|++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445666788999999999999999875 344455555 6777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCCCCH
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVEIFDDMLRNGVQPDR 299 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~~a~~~~~~m~~~g~~p~~ 299 (877)
+..+. +..++..+..+|...|++++|+..|++..+..+. +..+|..+...+...| ...+.+...++.... ..|..
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 66433 5667777777777777777777777777664322 4566666666654433 022334444444321 12222
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYN 338 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 338 (877)
..+..+..++...|++++|+..|++.++. .|+.....
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 23333444455556666666666666653 35544333
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=1.7e-06 Score=96.90 Aligned_cols=205 Identities=11% Similarity=0.002 Sum_probs=133.3
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 351 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
+.+..+|+++.... +-+...|...+..+.+.|+.++|.++|++.... +.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 34566777777642 335677777777788888888888888888776 33332222 22222111111 2222
Q ss_pred HHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 002814 431 ESSG---------I---RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK-GGLYKEAMQIF 497 (877)
Q Consensus 431 ~~~g---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~ 497 (877)
.+.- . .....+|...+..+.+.+..+.|..+|++. .. ...+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2110 0 011355677777777788899999999998 32 12344455433322222 33699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhh
Q 002814 498 REFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (877)
Q Consensus 498 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~ 573 (877)
+...+.. .-+...|...++...+.|+.+.|..+|+++. -....|...++.-...|+.+.+..++++++..
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9998754 2245667778888888999999999999973 25678888888778889998888888887764
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=5.5e-08 Score=99.51 Aligned_cols=216 Identities=12% Similarity=0.004 Sum_probs=139.6
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHH
Q 002814 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYA 230 (877)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~ 230 (877)
..+++.+..+...+.+.|++++|+..|+.++...+..+....++..+..++.+.|++++|+..|+++++..+. ....+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3446667778888899999999999999999886443333668888999999999999999999999886432 23567
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002814 231 FSALISAYGR--------SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (877)
Q Consensus 231 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~ 302 (877)
+..+..++.+ .|++++|+..|+++.+.... +...+..+.... .....+ ...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~--------~~~~~~-----------~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIR--------ELRAKL-----------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHH--------HHHHHH-----------HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHH--------HHHHHH-----------HHHH
Confidence 7888888888 99999999999998874322 222221111000 000000 1124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHchhCCCCCC--
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQ--DIFTYNTLLDAICKG----------AQMDLAFEIMAEMPAKNISPN-- 368 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~pd-- 368 (877)
..+...|.+.|++++|+..|+++++..... ....+..+..+|.+. |++++|+..|+++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 456666777777777777777776653211 234566666666655 677777777777766422111
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 002814 369 VVTYSTMIDGYAKAGRLDDA 388 (877)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A 388 (877)
......+-..+.+.++++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 23444455555555555443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=1.2e-07 Score=85.10 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
..+..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 113 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 333333333444444444444444433321 1123333444444444444444444444443332 11333444444444
Q ss_pred HHcCChHHHHHHHHHHH
Q 002814 520 CKNGLVESAVSLLDEMT 536 (877)
Q Consensus 520 ~~~g~~~~A~~~~~~m~ 536 (877)
.+.|++++|...|+++.
T Consensus 114 ~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 114 YKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHH
Confidence 44444444444444443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=2.2e-08 Score=117.59 Aligned_cols=130 Identities=15% Similarity=0.016 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA 307 (877)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 307 (877)
...+..+...|.+.|++++|++.|+++.+.... +...|..+..++...| ++++|++.|+++++.... +...+..+..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~-~~~~~~~lg~ 509 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTG-DYDSATKHFTEVLDTFPG-ELAPKLALAA 509 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTT-CSHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 344444444444444444444444444432211 3344444444444444 455555555544443211 3344444444
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 002814 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (877)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 362 (877)
+|.+.|++++ ++.|+++++.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 4555555555 55555544432 12344445555555555555555555555444
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=1e-07 Score=85.55 Aligned_cols=127 Identities=21% Similarity=0.320 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 452 (877)
..+...|...|++++|.++|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.+.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444444444444444444332 2233444444444444444555544444444332 23344444445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 453 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555544431 22344445555555555555555555555544
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=8.6e-08 Score=98.06 Aligned_cols=210 Identities=11% Similarity=-0.019 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHH
Q 002814 332 QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN---VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI--GLDRVS 406 (877)
Q Consensus 332 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~ 406 (877)
.+...+..+...+.+.|++++|++.|+++.+.... + ...+..+..+|.+.|++++|+..|++..+... ......
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35666777777777888888888888877765322 2 56677777777888888888888887776521 112345
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 407 YNTVLSIYAK--------LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (877)
Q Consensus 407 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 478 (877)
+..+..++.. .|++++|+..|+++++.. +.+.....++.... .+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 6666667777 777777777777776653 22222222221110 00000 011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCH--
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKA--DVVLYSALIDALCKN----------GLVESAVSLLDEMTKEGIRPNV-- 544 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~-- 544 (877)
.+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|+..|+++++. .|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChH
Confidence 67778888999999999999888754221 245677777778766 8889999999998874 3443
Q ss_pred --HHHHHHHHHHhhcCChhhh
Q 002814 545 --VTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 545 --~~~~~li~~~~~~g~~~~a 563 (877)
.....+-..+.+.++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 2344444445555554443
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=1.4e-07 Score=92.82 Aligned_cols=134 Identities=15% Similarity=0.049 Sum_probs=83.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 489 (877)
+..+|.+.|++++|+..|++.++.. +.+...+..+...|...|++++|...|++.++.. +.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6677777777777777777777665 5567777777777777777777777777777652 3356677777777655443
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 490 --YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNS 549 (877)
Q Consensus 490 --~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 549 (877)
.+.+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 3344455544432 122222333445556667777888888887776 4566554433
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=1.2e-06 Score=90.50 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=150.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HcC---C
Q 002814 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG--YCQEAISVFNSMKRYNLKPNLVTYNAVIDAC----GKG---G 277 (877)
Q Consensus 207 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g 277 (877)
...++|+++++.++...+. +..+|+.--..+...| ++++++++++.+....++ +..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3346899999999887554 6788999888888888 999999999999886544 566777655555 444 5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------
Q 002814 278 VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE--AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ------ 349 (877)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------ 349 (877)
++++++++++++++...+ +-.+|+.-.-++.+.|.++ ++++.++++++... .|-..|+.....+.+.++
T Consensus 125 -~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 -DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp -CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred -CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 778888888888876443 6677777777777777777 88888888887653 366777766666666665
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002814 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD-ALNMFSEMKFLG--IGLDRVSYNTVLSIYAKLGRFEEALLV 426 (877)
Q Consensus 350 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~ 426 (877)
++++++.++++...... |...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++++|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 67777777776665443 66777777766766666433 333444433321 123455666666666666666666666
Q ss_pred HHHHHH
Q 002814 427 CKEMES 432 (877)
Q Consensus 427 ~~~m~~ 432 (877)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=4.2e-07 Score=89.53 Aligned_cols=163 Identities=11% Similarity=0.024 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG----RFEEALLVCKEMESSGIRKDAVTYN 443 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~ 443 (877)
+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+..|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33344444444444444444444444444332 23333334443333 3 4444444444444432 334444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 444 ALLGGYGK----QGKYDEVRRMFEQMKADCVS-PNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSA 514 (877)
Q Consensus 444 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 514 (877)
.|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .+++++|...|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 44444443 44455555555544443210 013444444444444 444555555555554431 12334444
Q ss_pred HHHHHHHc-C-----ChHHHHHHHHHHHHCC
Q 002814 515 LIDALCKN-G-----LVESAVSLLDEMTKEG 539 (877)
Q Consensus 515 li~~~~~~-g-----~~~~A~~~~~~m~~~g 539 (877)
|...|.+. | +.++|+..|++..+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444432 2 4555555555555443
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=7e-06 Score=91.82 Aligned_cols=344 Identities=10% Similarity=-0.008 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHH----hcC
Q 002814 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNE-GYG-NTVYAFSALISAYG----RSG 242 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~~----~~g 242 (877)
++++.+..+|++++..- | +..+|...+....+.+. .+....+|+.++.. |.. .+...|...+..+. ..|
T Consensus 28 ~~~e~~~~iferal~~~---p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC---C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 77888888888888752 2 45677777776666653 45677788887653 322 35677877776554 245
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc-------------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPNL-VTYNAVIDACGK-------------GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~-------------~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 308 (877)
+.+.+..+|++....... +. ..|......-.. .+ .+..|..+++++...--..+...|...+..
T Consensus 104 ~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~-~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGDTLP-IFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 677888888888873221 22 222222211100 01 233444445444321000133355555544
Q ss_pred HHhC--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 002814 309 CSRG--GL-----WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (877)
Q Consensus 309 ~~~~--g~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 381 (877)
-... |- .+.+..+|++++.. ++.+...|...+..+.+.|+.++|.++|++.... +.+...|. .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 3322 11 34577889998875 3456888888899899999999999999998887 33333332 2333
Q ss_pred cCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 382 AGRLDDALNMFSEMKFLG---------IGL---DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g---------~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
..+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. +.. ..+..+|......-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence 2222222 22222110 001 1245666677777788899999999999 322 23445554333333
Q ss_pred HHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 002814 450 GKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESA 528 (877)
Q Consensus 450 ~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 528 (877)
...+ +.+.|..+|+...+.. .-+...|...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence 3333 6999999999998753 3345667777888888999999999999973 2678899999888889999999
Q ss_pred HHHHHHHHH
Q 002814 529 VSLLDEMTK 537 (877)
Q Consensus 529 ~~~~~~m~~ 537 (877)
..+++++.+
T Consensus 404 r~v~~~~~~ 412 (493)
T 2uy1_A 404 RELVDQKMD 412 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=4e-07 Score=89.70 Aligned_cols=175 Identities=9% Similarity=0.001 Sum_probs=106.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 002814 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLDDALNMFS 393 (877)
Q Consensus 318 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~A~~~~~ 393 (877)
|.+.|++..+.| +...+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455555555543 55556666666666666666666666655543 45555555555555 4 6666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 002814 394 EMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYGK----QGKYDEVRRMFEQ 464 (877)
Q Consensus 394 ~m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 464 (877)
+..+.| +...+..|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665544 45556666666655 56677777777776665410 115666666666766 6677777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 002814 465 MKADCVSPNLLTYSTLIDVYSKG-G-----LYKEAMQIFREFKQAG 504 (877)
Q Consensus 465 m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 504 (877)
..+. ..+...+..|..+|... | +.++|...|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7665 12444566666666543 2 6777777777777665
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=4.6e-06 Score=87.11 Aligned_cols=222 Identities=11% Similarity=0.077 Sum_probs=156.9
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-C
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGRS-G-Y 243 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~ 243 (877)
......++|+++++.++..+ |.+..+++.-..++...| .+++++++++.++...++ +..+|+.-...+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 33445578999999999886 566778888888888888 599999999999987654 788999888888777 7 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-
Q 002814 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--------HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL- 314 (877)
Q Consensus 244 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~- 314 (877)
+++++++++++.+...+ |..+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 89999999999986654 7888887666555544 344 888889988887554 77788888777777775
Q ss_pred ------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHchhCC----
Q 002814 315 ------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM--------------------DLAFEIMAEMPAKN---- 364 (877)
Q Consensus 315 ------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~g---- 364 (877)
++++++.+++++... +-|...|+-+-..+.+.|+. .+..+...++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 688888888888764 34778888777777776653 22333333333221
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 365 -ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 365 -~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
-.++...+..|++.|...|+.++|.++++.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 02355555666666666666666666666654
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=5.2e-07 Score=89.82 Aligned_cols=188 Identities=15% Similarity=0.077 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ 233 (877)
++.+..+...+.+.|++++|+..|+.++...+..+....++..++.++.+.|++++|+..|+++++..+... ..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556677788999999999999999987644444446778889999999999999999999988654321 134555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 002814 234 LISAYGR------------------SGYCQEAISVFNSMKRYNLKPN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (877)
Q Consensus 234 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g 294 (877)
+..++.+ .|++++|+..|+++.+.. |+ ..++....... .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~-----------~~~~~~~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV-----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH-----------HHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH-----------HHHHHHH---
Confidence 5555544 466777777777777643 32 22221111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 295 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
.....+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|++++|++.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0123466778889999999999999988632111 2568888999999999999999999888764
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=8.8e-08 Score=112.44 Aligned_cols=177 Identities=12% Similarity=-0.009 Sum_probs=145.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 380 AKAGRLDDALNMFSEMK--------FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 380 ~~~g~~~~A~~~~~~m~--------~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
...|++++|++.|++.. +.. +.+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 432 4456788889999999999999999999998765 6678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002814 452 QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (877)
.|++++|...|++.++.. +-+...|..+..+|.+.|++++ .+.|++.++.+. -+...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998863 3367888999999999999999 999999998763 3778999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhhcCChhhh
Q 002814 532 LDEMTKEGIRPNV-VTYNSIIDAFGRSATTECT 563 (877)
Q Consensus 532 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a 563 (877)
|+++.+ +.|+. ..|..+..++...++.+++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------C
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCC
Confidence 999987 45765 4777788887776654433
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=4.2e-08 Score=90.75 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=91.1
Q ss_pred HHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 002814 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 244 (877)
.+...|++++|++.|..+.... +.....+..+..+|.+.|++++|++.|+++++..+. +..+|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3445667777777777766553 233445556777777777777777777777776433 677777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 002814 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI-FDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (877)
Q Consensus 245 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~-~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 314 (877)
++|+..|++..+.... +..+|..+...+.+.| ++++|.+. +++.++.... +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 7777777777764322 4666777777777766 65554443 4666654322 45556655555555553
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=7.9e-08 Score=91.64 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 002814 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (877)
Q Consensus 283 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 360 (877)
|+..+++.++.... +...+..+..++...|++++|...|+++++....+ +...+..+...+...|+.++|...|++.
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34444444443211 34445555555555555555555555555443211 2334555555555555555555555443
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.72 E-value=2.3e-08 Score=92.57 Aligned_cols=100 Identities=6% Similarity=-0.066 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHH-HH
Q 002814 625 EILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALS-LF 701 (877)
Q Consensus 625 ~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~-~~ 701 (877)
++++|++.|++.++ +.| +..+|..++.+|...|++++|...|+++++.+|.+..+..++...+ ..|++++|.+ ++
T Consensus 46 ~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 46 EYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34444444544444 334 3344555555555566666666666665555555555544443332 3444444333 34
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHhcC
Q 002814 702 DEVKLMDSSTASAFYNALTDMLWHFG 727 (877)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~g 727 (877)
+++++++| .+..+|...+.++...|
T Consensus 124 ~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 124 ERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 55555555 45555555555555444
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.68 E-value=5.7e-07 Score=93.31 Aligned_cols=165 Identities=10% Similarity=-0.012 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHH-H
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM-I 376 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i 376 (877)
+...+..+...+...|++++|...|+++++.. +.+...+..+...|.+.|++++|++.++++.... |+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44566677778888899999999999888764 3367788888889999999999999998887653 444433332 3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCC
Q 002814 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD--AVTYNALLGGYGKQGK 454 (877)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~ 454 (877)
..+...++.++|+..|++..... +.+...+..+...|...|++++|+..|+++.+.. +.+ ...+..++..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 33667777888888888887764 5567788888888888888888888888887764 222 6678888888888888
Q ss_pred HHHHHHHHHHHHH
Q 002814 455 YDEVRRMFEQMKA 467 (877)
Q Consensus 455 ~~~A~~~~~~m~~ 467 (877)
.++|...|++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888776543
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.7e-07 Score=89.32 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 002814 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKG 487 (877)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~ 487 (877)
.+...+.+.|++++|+..|++..+.. +.+...+..+...|.+.|++++|...|+++.+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34455556666666666666654433 3455666666666666666666666666655432 233332222111 1121
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCChhhhHHH
Q 002814 488 GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 488 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 566 (877)
+...+|...|++..+... -+...+..+...+...|++++|+..|+++++....+ +...+..+..++...|+.++|+..
T Consensus 88 ~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 222345666777666542 256677777777777777777777777777643222 244667777777777777777777
Q ss_pred HHHHhh
Q 002814 567 VERDLG 572 (877)
Q Consensus 567 ~~~~l~ 572 (877)
+++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=3.3e-07 Score=95.16 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST- 479 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~- 479 (877)
+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345566677778888888888888888887765 556778888888888888888888888887664 345443322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhh
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN---VVTYNSIIDAFGR 556 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 556 (877)
....+.+.++.++|...|++..+... .+...+..+...|...|++++|+..|+++.+. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 23335667777788888888887653 36788888888888899999999998888875 343 4578888888888
Q ss_pred cCChhhhHHHHHHHhh
Q 002814 557 SATTECTVDDVERDLG 572 (877)
Q Consensus 557 ~g~~~~a~~~~~~~l~ 572 (877)
.|+.++|...+++++.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8888888888777664
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=1.3e-06 Score=86.89 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP--NVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
+...+..+...+.+.|++++|+..|+++.+..... ....+..+..+|.+.|++++|+..|+++.+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777643211 1345666777777777777777777777765
No 114
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.64 E-value=1.1e-05 Score=83.79 Aligned_cols=246 Identities=10% Similarity=0.049 Sum_probs=133.5
Q ss_pred HcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 416 KLGRF-EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK----------YDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (877)
Q Consensus 416 ~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 484 (877)
+.|.+ ++|+.+++.++..+ +.+..+|+.--..+...+. +++++.+++.++... +-+..+|+--...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44444 36677777666654 4455555554444333332 345555555555432 22455555555555
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChh
Q 002814 485 SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL-VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561 (877)
Q Consensus 485 ~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 561 (877)
.+.| .+++++.+++++.+... -|...|+.-...+.+.|. ++++++.++++++.... |...|+.....+.+.+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 5554 25555555555555442 255555555555555555 35555555555544322 3444444443333222110
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhccCchhhhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCC
Q 002814 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641 (877)
Q Consensus 562 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~ 641 (877)
.+- ..+. ...+.++++++.+++.+. +
T Consensus 197 ~~~-----------------------------------------------~~~~-----~~~~~~~eEle~~~~ai~--~ 222 (331)
T 3dss_A 197 DSG-----------------------------------------------PQGR-----LPENVLLKELELVQNAFF--T 222 (331)
T ss_dssp -----------------------------------------------------C-----CCHHHHHHHHHHHHHHHH--H
T ss_pred ccc-----------------------------------------------cccc-----cchHHHHHHHHHHHHHHH--h
Confidence 000 0000 001256778889998887 5
Q ss_pred CC-CHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHhcCCcchhHHHHHhhcc----ccchHHHHHHHHHHHh
Q 002814 642 KP-NVVTFSAILNACSRC-----------NSFEDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVK 705 (877)
Q Consensus 642 ~P-d~~t~~~ll~a~~~~-----------g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~A~~~~~~~~ 705 (877)
.| |...|+.+-..+.+. +.++++++.++++.+.+|++-.++..++... ..+..+++...+++++
T Consensus 223 ~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 223 DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 67 566677676666665 4578888888888888887655544432211 2456678888888888
Q ss_pred hcCCCcchhHHHHHH
Q 002814 706 LMDSSTASAFYNALT 720 (877)
Q Consensus 706 ~~~~~~~~~~~~~l~ 720 (877)
++|| -....|.-|.
T Consensus 303 ~~Dp-~r~~~y~d~~ 316 (331)
T 3dss_A 303 AVDP-MRAAYLDDLR 316 (331)
T ss_dssp HHCG-GGHHHHHHHH
T ss_pred HhCc-chhhHHHHHH
Confidence 8888 5556665543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=5.1e-07 Score=103.96 Aligned_cols=154 Identities=10% Similarity=-0.028 Sum_probs=103.4
Q ss_pred cCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002814 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (877)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 248 (877)
.|++++|++.|+++++.. +.+..++..+...+...|++++|.+.|+++++.... +..++..+...|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 367788888888887764 445667788888888888888888888888876433 6778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Q 002814 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG---GLWEAARNLFNEM 325 (877)
Q Consensus 249 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~A~~~~~~m 325 (877)
+.|++..+.... +...|..+..++.+.| ++++|.+.|++.++... .+...+..+...+... |++++|.+.+++.
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAG-QAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888888765432 5677777888888888 88888888888877533 2566777777888887 8888888888887
Q ss_pred HHcC
Q 002814 326 VHRG 329 (877)
Q Consensus 326 ~~~g 329 (877)
++.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 7764
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=1.6e-07 Score=86.57 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=91.9
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 002814 641 IKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (877)
Q Consensus 641 ~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (877)
+.|+. ..+..+..++.+.|++++|.+.|+.+...+|.+..++.++...+ ..|++++|+..|+++++++| .+...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHH
Confidence 67754 45888999999999999999999999999999999888876655 68999999999999999999 78889999
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 719 LTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.+|..+|++++|...+.++....
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=8.7e-07 Score=102.00 Aligned_cols=152 Identities=8% Similarity=-0.039 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002814 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (877)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~ 427 (877)
|++++|++.|++..+... -+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...|...|++++|...|
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555555444321 134445555555555555555555555554442 223444444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 002814 428 KEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQA 503 (877)
Q Consensus 428 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~ 503 (877)
++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5544433 3334444445555555555555555555444431 12344444444444444 4455555544444443
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=5.6e-07 Score=94.49 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHchhC----CCCCC-HH
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-----DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPN-VV 370 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~ 370 (877)
++..+..+|.. |++++|+..|++.++..... ...+++.+...|.+.|++++|++.|++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444455544 55555555555544321000 0234555555555566666665555554431 11111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMK 396 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (877)
.+..++.++...|++++|+..|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44445555555566666666666555
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=1.7e-06 Score=89.44 Aligned_cols=103 Identities=13% Similarity=0.004 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 552 (877)
+...+..+...+.+.|++++|...|++.++... .+...|..+..+|.+.|++++|+..+++.++.. .-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456667777778888888888888888877542 367778888888888888888888888887742 224557778888
Q ss_pred HHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 553 AFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
++...|++++|+..++++++..|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc
Confidence 8888888888888888888887765
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=2.8e-07 Score=82.13 Aligned_cols=102 Identities=15% Similarity=-0.021 Sum_probs=90.5
Q ss_pred CCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 002814 641 IKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (877)
Q Consensus 641 ~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (877)
+.|+. ..+...+..|.+.|++++|.+.|+++++.+|.+..+..++...+ ..|++++|++.++++++++| .+...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHH
Confidence 66754 45888999999999999999999999999999888877776555 78999999999999999999 78889999
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 719 LTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.+|...|++++|...++++++..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987654
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.55 E-value=2.8e-05 Score=81.21 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHH
Q 002814 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG-LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-A-QMDLAFEIM 357 (877)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 357 (877)
++|++++++++..... +..+|+.--.++...| .+++++++++.++... +.+..+|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3444444444443221 2233343333333444 3555555555555432 22344444444444443 4 455555555
Q ss_pred HHchhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHH
Q 002814 358 AEMPAKNISPNVVTYSTMIDGYAKAGRLD--------DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR-------FEE 422 (877)
Q Consensus 358 ~~m~~~g~~pd~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-------~~~ 422 (877)
+++.+...+ |...|+.....+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++ +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 555544322 4455554444444444443 5566666555543 3355555555555555544 456
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (877)
Q Consensus 423 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 454 (877)
+++.+++++... +-|...|+.+-..+.+.|+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 666666665544 4556666655555555444
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=1e-05 Score=84.00 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=66.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHH
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGIR-KD----AVTYNALLGGYGKQGKYDEVRRMFEQMKA----D-CVSPN-LLTYS 478 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~t~~ 478 (877)
+...+...|++++|+..|++..+.... .+ ..+++.+...|...|++++|...|+++++ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 334444444555555555554442111 11 22455555555555555555555555542 1 11111 23556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQA----GLKAD-VVLYSALIDALCKNGL-VESAVSLLDEMTK 537 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 537 (877)
.+...|.+.|++++|.+.+++.++. +.... ..+|..+..+|.+.|+ +++|.+.|++...
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6666666666666666666665431 11111 4566777777777774 5777777777654
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=6.9e-06 Score=80.59 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 415 (877)
.+..+...+.+.|++++|++.|++.. .++...|..+...|.+.|++++|++.|++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666667777777777777664 3466677777777777777777777777766653 445566677777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 416 KLGRFEEALLVCKEMESSGIRKD----------------AVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (877)
..|++++|+..|++..+.. +.+ ...+..+...|.+.|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777776643 222 256666666777777777777777776654
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=1.1e-05 Score=83.75 Aligned_cols=166 Identities=10% Similarity=0.057 Sum_probs=127.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 002814 410 VLSIYAKLGRFEEALLVCKEMESSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PN----LLTYST 479 (877)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 479 (877)
.+..+...|++++|..++++..+... .++ ...+..+...+...|++++|+..|+++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999998876431 122 123445777788889999999999999884322 23 347899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQ----A-GLKA-DVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYN 548 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~----~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 548 (877)
+...|...|++++|...|+++.+ . +..+ ...+|..+...|.+.|++++|+..+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999874 1 1111 2347888999999999999999999988752 32333 45888
Q ss_pred HHHHHHhhcCC-hhhhHHHHHHHhhhhh
Q 002814 549 SIIDAFGRSAT-TECTVDDVERDLGKQK 575 (877)
Q Consensus 549 ~li~~~~~~g~-~~~a~~~~~~~l~~~~ 575 (877)
.+..++.+.|+ +++|+..+++++....
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 99999999995 6999999999988654
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.49 E-value=2.5e-06 Score=75.93 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+......+.+.|++++|++.|+.+++.. |.+..++..+..+|.+.|++++|+..|+++++.... +..+|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 345567788888999999999999988875 456678888888899999999999999998887543 6788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 269 (877)
+|...|++++|++.|++..+..+. +...+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 899999999999999988874322 34444443
No 126
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=5.3e-05 Score=78.75 Aligned_cols=177 Identities=8% Similarity=0.038 Sum_probs=129.6
Q ss_pred HHHHHccCCHH-HHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHH
Q 002814 163 LRELGNRGEWS-KAIQCFAFAVKREERKNDQGKLASAMISILGRLGK----------VDLAKNIFETALNEGYGNTVYAF 231 (877)
Q Consensus 163 l~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~ 231 (877)
+....+.|.++ +|+++++.++..+ |.+..+++.--.++...+. ++++..+++.++...+. +..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHH
Confidence 33445567665 7999999999886 5666777766665555544 67889999999887554 78899
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 232 SALISAYGRSGY--CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD-FKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (877)
Q Consensus 232 ~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 308 (877)
+.-..++.+.|+ +++++++++++.+...+ |..+|+.-.-.+...| . ++++++.+++++...+. |...|+.....
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAA-VAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 988888888884 88999999999986654 8888888887777777 5 68999999999987654 77777776666
Q ss_pred HHhC--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002814 309 CSRG--------------GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG 347 (877)
Q Consensus 309 ~~~~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 347 (877)
+.+. +.++++.+.++..+... +-|...|+-+-..+.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5554 34677777777777654 33666666555444443
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=5.8e-06 Score=81.13 Aligned_cols=127 Identities=16% Similarity=0.048 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
+..+...+...|++++|++.|++.. .++...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666665542 3455556666666666666666666666655543 3445555556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002814 452 QGKYDEVRRMFEQMKADCVSP---------------NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~~p---------------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (877)
.|++++|...|++..+..... +...+..+..+|.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655532110 1144444555555555555555555555443
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.47 E-value=1.9e-06 Score=90.39 Aligned_cols=130 Identities=9% Similarity=-0.049 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-----CH
Q 002814 230 AFSALISAYGRSGYCQEAISVFNSMKRYN--L-KP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-----DR 299 (877)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p-----~~ 299 (877)
+|+.+...|.+.|++++|+..|++..+.- . .+ -..+++.+...|.. | ++++|++.|++.+...... ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 34444444444444444444444433210 0 01 12344444444544 5 5555555555554321000 02
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHR----GIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 300 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
.++..+...|.+.|++++|+..|++.++. +..+. ...+..+..++...|++++|+..|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555556666666666666666655542 11001 1244555555555666666666666654
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=8.9e-07 Score=81.44 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=93.6
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 632 VFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 632 ~~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
.|+++.. +.|+ ...+..+...+...|++++|...|+.+...+|.+..+..++...+ ..|++++|+..|+++++++|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4555554 5674 445778899999999999999999999999999888877775554 68999999999999999999
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+...|..++.+|...|++++|...+.++.+..
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 778899999999999999999999999887654
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=2.1e-05 Score=81.62 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCChhhh-HHHHHHHhhh
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECT-VDDVERDLGK 573 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a-~~~~~~~l~~ 573 (877)
+|..+...|.+.|++++|+..+++..+. +.... ..+|..+..+|.+.|+.++| ...+++++..
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4444555555555555555555554321 11111 33455555555555555555 4445555544
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=9.7e-06 Score=75.64 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002814 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (877)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 488 (877)
.+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+..+|...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 33334444444444444444443332 2234444444444444444444444444444331 123334444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 002814 489 LYKEAMQIFREFKQ 502 (877)
Q Consensus 489 ~~~~A~~~~~~m~~ 502 (877)
++++|...|+++.+
T Consensus 96 ~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 96 KFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44444444444443
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1e-05 Score=75.52 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (877)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 449 (877)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...|..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666666777777777777666543 3356666667777777777777777777766654 44566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 002814 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYST--LIDVYSKGGLYKEAMQIFREF 500 (877)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--li~~~~~~g~~~~A~~~~~~m 500 (877)
.+.|++++|...|+++.+.. +.+...+.. ++..+.+.|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777776642 223344422 223355556666666666554
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=2.1e-05 Score=81.65 Aligned_cols=169 Identities=13% Similarity=0.025 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CC
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR------VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KD 438 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~ 438 (877)
....+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|+..+++..+.... +.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456667788899999999999999988876422 22 22445666778889999999999998864311 12
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 002814 439 --AVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VSPN-----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA--- 507 (877)
Q Consensus 439 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 507 (877)
..+|+.+...|...|++++|...|+++.+.. ..++ ..++..+...|.+.|++++|...+++..+.....
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 4588999999999999999999999987320 1112 2588899999999999999999999998642110
Q ss_pred --CHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 002814 508 --DVVLYSALIDALCKNGLVESA-VSLLDEMTK 537 (877)
Q Consensus 508 --~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 537 (877)
-..+|..+..+|.+.|++++| ...|++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 167888999999999999999 777888764
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=6.7e-06 Score=82.97 Aligned_cols=189 Identities=7% Similarity=-0.053 Sum_probs=129.2
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHc------------CCC---
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAM-------ISILGRLGKVDLAKNIFETALNE------------GYG--- 225 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------g~~--- 225 (877)
+.+++.+|++.|..+...+ |.....|..+ ...+.+.++..++...+...+.. |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5788999999999999886 4555677777 56666666666666666665541 100
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC--
Q 002814 226 -----NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD-- 298 (877)
Q Consensus 226 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~-- 298 (877)
.-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+ ++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAE-RWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTT-CHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcC-CHHHHHHHHHHhhccC-CcccH
Confidence 002345566777888899999999998887643 44335555555677778 8888888887554431 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 299 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
...+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566777888888888888888888875433243 345667777778888888888888888765
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=2.2e-05 Score=79.17 Aligned_cols=152 Identities=11% Similarity=0.037 Sum_probs=72.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHchhC------------CCC-----
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTL-------LDAICKGAQMDLAFEIMAEMPAK------------NIS----- 366 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~------------g~~----- 366 (877)
..++.+.|.+.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-... |+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777764 2246667666 45555555555555555544431 100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 002814 367 ---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD--AVT 441 (877)
Q Consensus 367 ---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~ 441 (877)
--...+-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .+. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 00112233444455555555555555554433 2332233334444555555555555554332211 000 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
+..+..++.+.|++++|+..|++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3444444444444444444444444
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.37 E-value=2.5e-06 Score=78.46 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+.+.|++++|+..|+.++..+ |.+..++..+..+|...|++++|+..|+++++..+. +..+|..+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 344455566666666666666666666654 344556666666666666666666666666665433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 002814 237 AYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~ 256 (877)
+|.+.|++++|+..|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=8.5e-07 Score=94.27 Aligned_cols=151 Identities=14% Similarity=0.057 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 002814 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALI 235 (877)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li 235 (877)
+++++|++.|+.+.... +.....+..+...|.+.|++++|+..|++++....... ..+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555555544432 23455677777778888888888888888777643321 45666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 002814 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 315 (877)
.+|.+.|++++|+..|++..+.... +..+|..+..++...| ++++|+..|+++++.... +...+..+..++.+.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666654322 4556666666666666 666666666666654322 445555566666666666
Q ss_pred HHH-HHHHHHHH
Q 002814 316 EAA-RNLFNEMV 326 (877)
Q Consensus 316 ~~A-~~~~~~m~ 326 (877)
++| ..+|+.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655 33444443
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=1.1e-06 Score=80.15 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=90.6
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 632 VFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 632 ~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
.|+++.. +.|+. ..+..+...+...|++++|...|+.+...+|.+..+...+...+ ..|++++|+..|+++++++|
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444433 55643 45677888999999999999999999999999888877775554 78999999999999999999
Q ss_pred CcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
.+..+|..++.+|...|++++|...+.++....
T Consensus 84 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 84 -NEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 788899999999999999999999999887654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=3.4e-06 Score=87.07 Aligned_cols=95 Identities=6% Similarity=-0.086 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
.+..+...+.+.|++++|+..|+++++.... +...|..+..+|.+.|++++|+..|++..+.... +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3444444555555555555555555544221 4445555555555555555555555555443221 3444555555555
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 002814 275 KGGVDFKHVVEIFDDMLR 292 (877)
Q Consensus 275 ~~g~~~~~a~~~~~~m~~ 292 (877)
..| ++++|+..|++.++
T Consensus 84 ~~g-~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EME-SYDEAIANLQRAYS 100 (281)
T ss_dssp HTT-CHHHHHHHHHHHHH
T ss_pred HcC-CHHHHHHHHHHHHH
Confidence 555 55555555555443
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=1.3e-05 Score=70.27 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=5.4
Q ss_pred HHHcCCHHHHHHHHH
Q 002814 449 YGKQGKYDEVRRMFE 463 (877)
Q Consensus 449 ~~~~g~~~~A~~~~~ 463 (877)
|.+.|++++|...|+
T Consensus 87 ~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQ 101 (125)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHH
Confidence 333333333333333
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.33 E-value=1.8e-05 Score=69.46 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 484 (877)
..+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|..+|+++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444455555555555555555554432 3344555555555555555555555555555432 22455555556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (877)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (877)
...|++++|...|+++.+... .+...+..+...+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 666666666666666555432 234444444444433
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=4.5e-06 Score=81.11 Aligned_cols=27 Identities=7% Similarity=-0.163 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 548 NSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 548 ~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
..+..++...|++++|...+++++...
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 444445555555555555555555543
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.4e-06 Score=74.89 Aligned_cols=98 Identities=6% Similarity=-0.111 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
...+..++..+.+.|++++|.+.|+++++.+|.+..+..++...+ ..|++++|+..++++++++| .+...|..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 345777888999999999999999999999998888777775554 68899999999999999999 6788999999999
Q ss_pred HhcCchhhHHHHHHHhhhhh
Q 002814 724 WHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 724 ~~~g~~~~A~~~~~~~~~~~ 743 (877)
...|++++|...+.++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999887654
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=4.3e-06 Score=81.23 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=95.0
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhc
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE----GY-GNTVYAFSALISAYGRS 241 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~ 241 (877)
...|++++|.+.++..... +.....++..+...+...|++++|...+++++.. +. .....++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3568888888855554332 2345667788888888888888888888887662 11 11345677777778888
Q ss_pred CCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 002814 242 GYCQEAISVFNSMKRY----NLKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-QPD----RITFNSLLAVCS 310 (877)
Q Consensus 242 g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~ 310 (877)
|++++|++.|++..+. +-.+ ...++..+...+...| ++++|...+++.+...- ..+ ..++..+...+.
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8888888888776542 1011 1334566666666677 77777777776653210 011 123455556666
Q ss_pred hCCCHHHHHHHHHHHHH
Q 002814 311 RGGLWEAARNLFNEMVH 327 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~ 327 (877)
..|++++|.+.+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 66666666666665543
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=3.3e-06 Score=80.20 Aligned_cols=122 Identities=6% Similarity=0.076 Sum_probs=89.1
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH-
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA-YGRSGYC- 244 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~- 244 (877)
...|++++|+..|+.++... +.+..++..+..+|...|++++|...|+++.+.... +..++..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 45677888888888887764 445667788888888888888888888888776433 67777777777 7778887
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 002814 245 -QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (877)
Q Consensus 245 -~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g 294 (877)
++|+..|+++.+.... +...+..+...+...| ++++|...|+++++..
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQA-NYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhC
Confidence 8888888888765432 5667777777888888 8888888888887753
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=2.1e-05 Score=69.57 Aligned_cols=61 Identities=21% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 475 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|...|++..
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333333333334444444444443333322 1123333334444444444444444444443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=1.5e-05 Score=70.57 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
+..+...+...|++++|+..+++..+.. +.+...+..+...|.+.|++++|...|++..
T Consensus 49 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 49 FCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333333333333333333333322 2223333333334444444444444444333
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=4.5e-06 Score=78.19 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 002814 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDM 722 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (877)
+...+..+...|...|++++|.+.|+++++.+|.+..+..++...+ ..|++++|+..|+++++++| .+...|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4556888899999999999999999999999999888877775554 78999999999999999999 678999999999
Q ss_pred HHhcCchhhHHHHHHHhhhhh
Q 002814 723 LWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~ 743 (877)
|...|++++|...+.++.+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=6.3e-06 Score=78.23 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=73.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 002814 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGGLY--KE 492 (877)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~ 492 (877)
..|++++|+..+++..+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666655543 4455666666666666666666666666665542 2245566666666 5566666 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002814 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (877)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (877)
|...|+++.+... .+...+..+...|...|++++|+..|+++.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777666542 24566666777777777777777777777664
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=3.3e-06 Score=75.24 Aligned_cols=97 Identities=9% Similarity=0.052 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc------hhHHHH
Q 002814 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA------SAFYNA 718 (877)
Q Consensus 646 ~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~ 718 (877)
..+..|++.+.+.|++++|++.|+++++.+|.+..+..++...+ ..|++++|++.++++++++|... ...|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34667899999999999999999999999999888877776555 78999999999999998877322 236778
Q ss_pred HHHHHHhcCchhhHHHHHHHhhhh
Q 002814 719 LTDMLWHFGQKRGAQLVVLEGKRR 742 (877)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~ 742 (877)
++.++...|++++|.+.+.+++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999999988754
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.24 E-value=1.4e-05 Score=71.28 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
|..+...|.+.|++++|++.|++..+.. +.+...+..+...|...|++++|+..+++..+.. +.+...+..+...|.+
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 3333333334444444444444333321 1233333333344444444444444444433322 2233344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 002814 452 QGKYDEVRRMFEQMK 466 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~ 466 (877)
.|++++|.+.|++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444443
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=4e-06 Score=73.95 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhc
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (877)
+..+...+.+.|++++|...|+++.+.+|.+..+...+...+ ..|++++|+..++++++++| .+...+..|+.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 455677888999999999999999999999888877765544 68999999999999999999 6788999999999999
Q ss_pred CchhhHHHHHHHhhhh
Q 002814 727 GQKRGAQLVVLEGKRR 742 (877)
Q Consensus 727 g~~~~A~~~~~~~~~~ 742 (877)
|++++|...+.++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887654
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.24 E-value=1.5e-05 Score=71.02 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (877)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 482 (877)
+...+..+...+.+.|++++|+..|++..+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555566666666666666666665543 3355556666666666666666666666655542 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002814 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523 (877)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 523 (877)
+|.+.|++++|.+.|++..+... -+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 66666666666666666655431 13344455555554443
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=1.5e-05 Score=84.48 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 002814 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMID 377 (877)
Q Consensus 298 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 377 (877)
+...+..+...|.+.|++++|+..|++.++....... -..+.+.++-. -....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHHH--------HHHHHHHHHHH
Confidence 4566777778888888888888888888775322110 00001100000 01344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (877)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 457 (877)
+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+..++..+...+.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555543 3345555555555666666666666665555543 3345555555555555555555
Q ss_pred H-HHHHHHHH
Q 002814 458 V-RRMFEQMK 466 (877)
Q Consensus 458 A-~~~~~~m~ 466 (877)
| ..+|..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5 33444443
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.9e-05 Score=68.75 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+.+.|++++|+..|+.++... +.+..++..+..++.+.|++++|+..|+++++.... +..+|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 345556677788888888888888888775 445667888888888888888888888888876543 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 002814 237 AYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~ 257 (877)
++...|++++|+..|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888887763
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=1e-05 Score=72.74 Aligned_cols=100 Identities=11% Similarity=-0.064 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 002814 643 PNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTD 721 (877)
Q Consensus 643 Pd~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 721 (877)
.+...+..++..+...|++++|...|+.+...+|.+..+..++...+ ..|++++|+..++++++.+| .+...|..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 36778889999999999999999999999999998887777765544 68899999999999999999 67889999999
Q ss_pred HHHhcCchhhHHHHHHHhhhhh
Q 002814 722 MLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+|...|++++|...+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999887654
No 157
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=6e-06 Score=75.78 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
+...+.+.|++++|+..|+.++... +.+..++..+..+|...|++++|+..|++++...+. +..++..+..+|...
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 3333444444444444444444332 222333333444444444444444444444333221 233333344444444
Q ss_pred CCHHHHHHHHHHH
Q 002814 242 GYCQEAISVFNSM 254 (877)
Q Consensus 242 g~~~~A~~~~~~m 254 (877)
|++++|+..|++.
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=5.1e-05 Score=86.24 Aligned_cols=103 Identities=10% Similarity=0.007 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCcchhHHHHHhhcc--------------
Q 002814 626 ILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCN-SFEDASMLLEELRLFDNQVYGVAHGLLMGY-------------- 689 (877)
Q Consensus 626 ~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-------------- 689 (877)
+++++++++++.+ +.| |...|+.-..++.+.| .++++.++++++++.++.++.+++.....+
T Consensus 125 ~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 4556777777776 344 6667777777777888 889999999999999999888877652221
Q ss_pred -ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhh
Q 002814 690 -RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRG 731 (877)
Q Consensus 690 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 731 (877)
..+.+++|.+.++++++.+| .+...|+.+.+++.+.|+.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 13779999999999999999 788999999999999888655
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.16 E-value=3.8e-06 Score=81.56 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 371 TYSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
.+..+...+.+.|++++|+..|++...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555666666666655554
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=9.2e-06 Score=69.79 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCc--chhHHHHHH
Q 002814 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSST--ASAFYNALT 720 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 720 (877)
+...+..++..+...|++++|...|+++.+.++....+..++...+ ..|++++|+..++++++.+| . +..++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHH
Confidence 3445777888999999999999999999998888777666665444 67899999999999999988 6 788999999
Q ss_pred HHHHhc-CchhhHHHHHHHhhhh
Q 002814 721 DMLWHF-GQKRGAQLVVLEGKRR 742 (877)
Q Consensus 721 ~~~~~~-g~~~~A~~~~~~~~~~ 742 (877)
.+|... |++++|.+.+.++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999887654
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=8e-05 Score=64.35 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+...|++++|+..|+.++... +.+..++..+..++...|++++|...++++.+.... +..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 345556667777888888888888877764 344567777777788888888888888887776432 5677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 002814 237 AYGRSGYCQEAISVFNSMKRYN 258 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g 258 (877)
++...|++++|.+.|++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 7888888888888888777643
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.10 E-value=4.9e-05 Score=67.46 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--KAD----VVLYSA 514 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 514 (877)
++..+...|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.|++.++... ..+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555532 22455555555555666666666655555544211 011 124555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 002814 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547 (877)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (877)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 566666666666666666666552 3454433
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.09 E-value=2.5e-05 Score=71.03 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
+.+..+...+.+.|++++|+..|+.++... |.+..++..+..++.+.|++++|...|++++...+. +...+..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 344456667777888888888888887774 455667777888888888888888888888776543 5667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 002814 237 AYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~ 256 (877)
+|...|++++|+..|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887765
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=1.7e-05 Score=72.20 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCc-------chh-----HHHHHhhcc-ccchHHHHHHHHHHHhhc-------
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRLFDNQ-------VYG-----VAHGLLMGY-RDNIWVQALSLFDEVKLM------- 707 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~-------~~~-----~~~~l~~~~-~~~~~~~A~~~~~~~~~~------- 707 (877)
+...+..+.+.|++++|.+.|+++++.+|. ++. +..+....+ ..|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 455667777888888888888888887777 332 444443333 567888888888888888
Q ss_pred CCCcchhHH----HHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 708 DSSTASAFY----NALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 708 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+| .+...| +.++.+|..+|++++|...++++.+..
T Consensus 94 ~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 94 NQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp TS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99 678888 999999999999999999999887653
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.06 E-value=5.2e-05 Score=70.77 Aligned_cols=98 Identities=18% Similarity=0.005 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 235 (877)
.+.+..+...+.+.|++++|++.|+.++... +.+..++..+..+|.+.|++++|+..|+++++.... +..+|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4456667788888999999999999998875 455678888899999999999999999999887543 688888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
.+|.+.|++++|+..|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.06 E-value=0.00014 Score=62.73 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 451 (877)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444444332 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 002814 452 QGKYDEVRRMFEQMKA 467 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~ 467 (877)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=2.9e-05 Score=68.26 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=81.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|+..|+.++... |.+..++..+..++...|++++|+..|+++++..+. +..++..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34556677888999999999999999885 556778888999999999999999999999887544 67888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 002814 238 YGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~ 257 (877)
|.+.|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.04 E-value=6.2e-05 Score=72.82 Aligned_cols=128 Identities=13% Similarity=0.002 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhCCCC-C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-P--------------NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400 (877)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p--------------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 400 (877)
.+..+...+.+.|++++|++.|++....... + ....|..+..+|.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444445555555555555555554432111 0 02455555556666666666666666655542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR-RMFEQM 465 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m 465 (877)
+.+...+..+..+|...|++++|+..|++..+.. +.+..++..+...+...++.+++. ..|..|
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666666666655443 334555555555555555544444 333333
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=7.2e-05 Score=64.00 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ 233 (877)
++.+..+...+.+.|++++|+..|+.++... +.+..++..+..++...|++++|.+.|+++++.. +. +..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 4455556677777788888888888777764 3445567777777778888888888888777653 22 4667777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCC
Q 002814 234 LISAYGRS-GYCQEAISVFNSMKRYN 258 (877)
Q Consensus 234 li~~~~~~-g~~~~A~~~~~~m~~~g 258 (877)
+...+.+. |++++|++.|++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777777 88888888877776643
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.01 E-value=8.7e-05 Score=66.52 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=70.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
++..+..+...+...|++++|+..|..++... +.+..++..+..++...|++++|...|+++++.... +..+|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 34556667777777778888888887777764 344567777777777777777777777777776433 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 002814 235 ISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~ 256 (877)
..+|...|++++|+..|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777777664
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=7.2e-06 Score=91.15 Aligned_cols=90 Identities=9% Similarity=-0.066 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
..+|..+..+|.+.|++++|+..|+++++.+|.+..+.+++...+ ..+++++|+..|+++++++| .+..++..|+.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 356888999999999999999999999999999888877776555 68999999999999999999 7788999999999
Q ss_pred HhcCchhhHHHH
Q 002814 724 WHFGQKRGAQLV 735 (877)
Q Consensus 724 ~~~g~~~~A~~~ 735 (877)
.+.|++++|.+-
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00018 Score=65.24 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCCh---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQ---GKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 232 (877)
...+..+...+...|++++|++.|+.++... +.+ ..++..+..++...|++++|+..++++++.... +..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4556667788889999999999999999875 333 667888899999999999999999999886433 678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 271 (877)
.+..+|...|++++|+..|++..+.... +...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 8999999999999999999998874322 3444443333
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.97 E-value=7.8e-05 Score=65.87 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--KAD----VVLYSA 514 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 514 (877)
.+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...|+++.+... ..+ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555566666666666666655542 23455556666666666666666666666554321 111 556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
+..+|.+.|++++|.+.|+++.+. .|+...+..+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 666777777777777777777663 3454444444433
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=0.00025 Score=62.60 Aligned_cols=98 Identities=11% Similarity=-0.059 Sum_probs=76.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 002814 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSALI 235 (877)
Q Consensus 159 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li 235 (877)
+..+...+.+.|++++|+..|+.++...+..+....++..+..++.+.|++++|...|+++++.... + ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 4446667778899999999999988876433322257777888889999999999999998876433 3 66778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 002814 236 SAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
.+|.+.|++++|+..|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999888764
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=3.2e-05 Score=72.02 Aligned_cols=96 Identities=10% Similarity=-0.108 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc------------------CCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhc
Q 002814 647 TFSAILNACSRCNSFEDASMLLEELRLF------------------DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLM 707 (877)
Q Consensus 647 t~~~ll~a~~~~g~~~eA~~~~~~~~~~------------------~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~ 707 (877)
.+...+..+.+.|++++|...|++++.. ++....+..++...+ ..|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4667788889999999999999998876 444455555554444 688999999999999999
Q ss_pred CCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 708 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+| .+...|..++.+|...|++++|...+.++....
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 99 778889999999999999999999999887654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=7.3e-05 Score=66.07 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 430 (877)
..+...|...|++++|+..|++..... +.+...+..+...|...|++++|...++++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444444444444444433332 223333334444444444444444444443
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=0.00026 Score=64.11 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 002814 408 NTVLSIYAKLGRFEEALLVCKEM 430 (877)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~m 430 (877)
..+..+|...|++++|...|++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00025 Score=78.00 Aligned_cols=165 Identities=11% Similarity=0.012 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHH
Q 002814 372 YSTMIDGYAKAGRLDDALNMFSEMKFLG-IGLDR----VSYNTVLSIYAKLGRFEEALLVCKEMES----SGIRK-DAVT 441 (877)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~-~~~~ 441 (877)
+..+...|.+.|++++|.+.+.++...- ...+. .+.+.+...+...|+.++|..+++.... .+... -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455666666666666666665543320 01111 1122222233344556666666555432 11111 1344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC--C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HH
Q 002814 442 YNALLGGYGKQGKYDEVRRMFEQMKADC--V--SP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQA--GLKAD----VV 510 (877)
Q Consensus 442 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~--~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~ 510 (877)
+..+...|...|++++|..+++++...- . .+ ...++..++..|...|++++|..++++.... .+..+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 5555666666666666666665554311 0 01 1334555555566666666666555554321 01111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444455555555555554443
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00014 Score=67.52 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcccc---------------CCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002814 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREER---------------KNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (877)
...+......+.+.|++++|+..|..++..-.. .+....++..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666788889999999999999999876100 12345677888888888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
...+. +..+|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76533 6778888888888888888888888888764
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00038 Score=76.58 Aligned_cols=119 Identities=7% Similarity=-0.071 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC---CCHHHHHHHHHHHHHcC
Q 002814 279 DFKHVVEIFDDMLR----NGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHR--GID---QDIFTYNTLLDAICKGA 348 (877)
Q Consensus 279 ~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~---~~~~~~~~li~~~~~~g 348 (877)
+++.+.+++++... .+..+. ..++..|...|...|++++|..+++++... +.. ....++..++..|...|
T Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR 189 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence 45555555554432 121222 234555566666666666666666655432 110 11345666666666666
Q ss_pred CHHHHHHHHHHchhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 349 QMDLAFEIMAEMPAK----NISPN--VVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (877)
Q Consensus 349 ~~~~A~~~~~~m~~~----g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (877)
++++|..++++.... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 190 NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666666666554321 11111 23455556666667777777776666543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.87 E-value=1.2e-05 Score=70.20 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhc---CCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHH
Q 002814 659 NSFEDASMLLEELRLF---DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQL 734 (877)
Q Consensus 659 g~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 734 (877)
|++++|...|+++++. +|....+..++...+ ..|++++|+..|+++++.+| .+..++..++.+|...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455555554444 233333333332222 34455555555555555555 455666666777777777777776
Q ss_pred HHHHhhhh
Q 002814 735 VVLEGKRR 742 (877)
Q Consensus 735 ~~~~~~~~ 742 (877)
.+.++...
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666544
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=1.8e-05 Score=87.89 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHH
Q 002814 171 EWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALIS 236 (877)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li~ 236 (877)
++++|++.|+...... +.....+..+...|.+.|++++|...|+++++...... ..+|..+..
T Consensus 249 ~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444332 23344566677777777777777777777766432211 344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~ 292 (877)
+|.+.|++++|+..|++..+.... +..+|..+..+|...| ++++|+..|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMN-EFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHH
Confidence 444445555555544444443211 3444444444444444 44444444444444
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=0.00034 Score=79.39 Aligned_cols=177 Identities=8% Similarity=0.044 Sum_probs=132.2
Q ss_pred HHccCCH-HHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 166 LGNRGEW-SKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK----------VDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 166 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
+.+.|++ ++|++.++.++..+ |.+..+|+.-..++.+.|+ ++++.+.++.+++..++ +..+|+.-
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR 113 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHR 113 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3344444 67899999999886 5667788888888888877 89999999999987654 78899999
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 002814 235 ISAYGRSG--YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (877)
Q Consensus 235 i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 312 (877)
..++.+.| +++++++.++++.+...+ |..+|+.-.-++.+.|..++++++.++++++..+. |...|+....++.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l 191 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence 88899999 679999999999987655 88888888777777764678889998888877554 677777776666553
Q ss_pred --------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002814 313 --------------GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (877)
Q Consensus 313 --------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 349 (877)
+.++++.+.+++++... +-|...|+.+-..+.+.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666553 2255566665555555554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.85 E-value=3e-05 Score=86.45 Aligned_cols=112 Identities=9% Similarity=-0.036 Sum_probs=94.1
Q ss_pred hHhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHH
Q 002814 623 RQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSL 700 (877)
Q Consensus 623 ~~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~ 700 (877)
.+++++|++.|++.++ +.| +..++..+..+|.+.|++++|.+.|+++.+.+|.+..+..++...+ ..|++++|++.
T Consensus 19 ~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3588899999999987 456 5778999999999999999999999999999999888877776555 68999999999
Q ss_pred HHHHhhcCCCcchhHHHHHHHH--HHhcCchhhHHHHHH
Q 002814 701 FDEVKLMDSSTASAFYNALTDM--LWHFGQKRGAQLVVL 737 (877)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 737 (877)
++++++.+| .+...+..++.+ +.+.|++++|.+++.
T Consensus 97 ~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999 667788888888 888999999999887
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=0.00019 Score=65.19 Aligned_cols=99 Identities=15% Similarity=0.021 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCC----h-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 002814 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND----Q-----GKLASAMISILGRLGKVDLAKNIFETALNE----- 222 (877)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 222 (877)
+.+......+.+.|++++|++.|+.+++..+..+. + ..+|..+..++.+.|++++|+..|+++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555677788899999999999999988743211 1 226777777777888888888777777765
Q ss_pred --CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 223 --GYGNTVYAF----SALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 223 --g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
.+. +..+| .....++...|++++|+..|++..+
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 432 45566 6677777777777777777777654
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=7.9e-05 Score=68.69 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HH
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VV 545 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 545 (877)
++..+...|...|++++|.+.+++..+.... .+ ...+..+...+...|++++|...+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555554331100 01 334555566666666666666666665432 11111 23
Q ss_pred HHHHHHHHHhhcCChhhhHHHHHHHhhhh
Q 002814 546 TYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (877)
Q Consensus 546 ~~~~li~~~~~~g~~~~a~~~~~~~l~~~ 574 (877)
++..+...+...|++++|++.++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55566666777777777777776666543
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.83 E-value=0.00011 Score=65.12 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCcch---hHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc---hhHHHHHHH
Q 002814 649 SAILNACSRCNSFEDASMLLEELRLFDNQVY---GVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA---SAFYNALTD 721 (877)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 721 (877)
..+...+...|++++|.+.|+.+...+|.+. .+...+...+ ..|++++|+..++++++..| .+ ...+..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 3456677788999999999999888777665 3444443333 67899999999999999888 45 667888999
Q ss_pred HHHhcCchhhHHHHHHHhhhhh
Q 002814 722 MLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
+|...|++++|...+.++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999998877543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.81 E-value=3.8e-05 Score=67.01 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=70.2
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEA 247 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 247 (877)
..|++++|+..|+.++..+...+.+..++..+..+|...|++++|+..|+++++..+. +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3578899999999998873222455678888999999999999999999999887544 688888899999999999999
Q ss_pred HHHHHHHHhC
Q 002814 248 ISVFNSMKRY 257 (877)
Q Consensus 248 ~~~~~~m~~~ 257 (877)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.77 E-value=0.00014 Score=67.03 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHH
Q 002814 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GLK-ADVV 510 (877)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~ 510 (877)
++..+...|...|++++|...+++..+... ..+ ...+..+...|...|++++|.+.+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 444555555556666666665555443210 001 334556666666777777777776665532 100 1134
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 511 LYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777788888888888888887764
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=6.8e-05 Score=68.01 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=66.3
Q ss_pred HhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHhcCCcchhHHHHHhhccc-c
Q 002814 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSF----------EDASMLLEELRLFDNQVYGVAHGLLMGYR-D 691 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~----------~eA~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 691 (877)
+.+++|++.+++..+ +.| |...|..++.++...|++ ++|+..|+++++++|+...+.+++...+. .
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 478889999999887 567 666788888888877664 58888888888888887777777655542 2
Q ss_pred -----------chHHHHHHHHHHHhhcCCCcchh
Q 002814 692 -----------NIWVQALSLFDEVKLMDSSTASA 714 (877)
Q Consensus 692 -----------~~~~~A~~~~~~~~~~~~~~~~~ 714 (877)
+++++|++.|+++++++| .+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P-~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP-DNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT-TCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC-CCHH
Confidence 478888888888888888 4443
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.69 E-value=7.1e-05 Score=83.44 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=52.7
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 245 (877)
+.+.|++++|++.|+++++.. +.+..++..+..+|.+.|++++|++.++++++.... +..+|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 445666666666666666653 334556666666666666666666666666665322 4556666666666666666
Q ss_pred HHHHHHHHHHh
Q 002814 246 EAISVFNSMKR 256 (877)
Q Consensus 246 ~A~~~~~~m~~ 256 (877)
+|++.|++..+
T Consensus 92 eA~~~~~~al~ 102 (477)
T 1wao_1 92 AALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00032 Score=75.21 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=52.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcccc-------------CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREER-------------KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 224 (877)
.+..+...+.+.|++++|++.|+.+++.... .+....++..+..+|.+.|++++|++.++++++...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3555667777788888888888877762100 112233444455555555555555555555554332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002814 225 GNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (877)
. +..+|..+..+|.+.|++++|++.|++..+
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 344555555555555555555555555444
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00011 Score=62.83 Aligned_cols=90 Identities=14% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcc------hhHH
Q 002814 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA------SAFY 716 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 716 (877)
+...+..++..+...|++++|.+.|+++.+.+|.+..+..++...+ ..|++++|++.++++++.+| .+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHHH
Confidence 4556788899999999999999999999999998887777765554 78899999999999999998 44 5566
Q ss_pred HHHHHHHHhcCchhhHHH
Q 002814 717 NALTDMLWHFGQKRGAQL 734 (877)
Q Consensus 717 ~~l~~~~~~~g~~~~A~~ 734 (877)
..++.++...|+.++|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 667777777776665543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=0.00026 Score=78.32 Aligned_cols=140 Identities=8% Similarity=-0.027 Sum_probs=94.8
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhhhhhhhhccCchh
Q 002814 518 ALCKNGLVESAVSLLDEMTKE---GIR---PNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (877)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---g~~---p~~-~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (877)
.+...|++++|+.++++.++. -+. |+. .+++.|..+|...|++++|..+++++++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------ 379 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------------ 379 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------
Confidence 345678888888888877642 122 333 3788999999999999999877655443
Q ss_pred hhhhccchhHHHHHHHHHHHHHhcCCcchhhhhHhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHH
Q 002814 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLE 669 (877)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~ 669 (877)
++++..-. -.|+. .+++.|...|...|++++|..+++
T Consensus 380 -----------------------------------------i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 380 -----------------------------------------GYMKLYHH-NNAQLGMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp -----------------------------------------HHHHHSCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------------------HHHHHcCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 43333211 23443 358899999999999999999987
Q ss_pred HHHhcCCcchhHHHHHhhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 670 ELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
++.+ ++++..-.+........+.|..++..+|++++|..++.+++++.
T Consensus 418 ~Al~--------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 418 KAYA--------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHH--------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7652 22222211111224455677778888899999999888887654
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.60 E-value=0.00021 Score=75.76 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=61.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|+..|..++... +.+. .+...|+.+++...+. ..+|..+..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34556677777888888888888887763 2221 0111222222221110 1245555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHH
Q 002814 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLWE 316 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~ 316 (877)
|.+.|++++|+..|++..+.... +..+|..+..++...| ++++|+..|+++++.... +...+..|... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666553221 4555666666666666 666666666665543211 22333333333 22334455
Q ss_pred HHHHHHHHHHHc
Q 002814 317 AARNLFNEMVHR 328 (877)
Q Consensus 317 ~A~~~~~~m~~~ 328 (877)
.+..+|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 556666665543
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.60 E-value=0.00055 Score=73.34 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|.+.|++++|+..|++.++
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444445555555555555555554433 23444444455555555555555555554444
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.0019 Score=57.99 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 002814 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAM 494 (877)
Q Consensus 419 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~ 494 (877)
++++|+..|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555554 22222 4444555555555555565555543 45555555555555 45566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 002814 495 QIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEG 539 (877)
Q Consensus 495 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 539 (877)
+.|++..+.| +...+..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 45555555555555 556666666666665544
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.58 E-value=7e-05 Score=79.43 Aligned_cols=115 Identities=5% Similarity=-0.106 Sum_probs=66.0
Q ss_pred HhHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHH
Q 002814 624 QEILCILGVFQKMHKLKIKPNVV------------------TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~Pd~~------------------t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l 685 (877)
+++++|+..|++.+. +.|+.. +|..+..+|.+.|++++|...|+++++.+|.+..+.+++
T Consensus 193 g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 270 (338)
T 2if4_A 193 EKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270 (338)
T ss_dssp SCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 467889999998876 456554 677888888899999999999999988888887777776
Q ss_pred hhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH-hcCchhhHHHHHHHhhh
Q 002814 686 LMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW-HFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 686 ~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 741 (877)
...+ ..|++++|+..|+++++++| .+..++..|..+.. ..++.+++..++.++..
T Consensus 271 g~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 271 GKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5554 67889999999999988888 66777777777643 34556666666655543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00014 Score=62.97 Aligned_cols=79 Identities=19% Similarity=0.113 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 663 DASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 663 eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
+|.+.|+++.+.+|.+..+..++...+ ..|++++|+..++++++.+| .+...|..++.+|...|++++|...+.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544444443332 45556666666666666777 5677788889999999999999988887765
Q ss_pred h
Q 002814 742 R 742 (877)
Q Consensus 742 ~ 742 (877)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.53 E-value=0.00089 Score=60.16 Aligned_cols=111 Identities=9% Similarity=-0.043 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEV 458 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 458 (877)
+++++|++.|++..+.| .++.. |...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777776 33333 5566666667777888887777754 66777777777777 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 002814 459 RRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAG 504 (877)
Q Consensus 459 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 504 (877)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888877765 66777777777777 678888888888887765
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.52 E-value=0.00017 Score=65.34 Aligned_cols=100 Identities=16% Similarity=0.031 Sum_probs=78.3
Q ss_pred HccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002814 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV----------DLAKNIFETALNEGYGNTVYAFSALIS 236 (877)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~ 236 (877)
.+.+++++|++.|+.+++.+ |.+...+..+..++...+++ ++|+..|+++++..+. +..+|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 44567899999999999886 56677888888888888765 5999999999987654 6788999999
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 237 AYGRSG-----------YCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 237 ~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
+|...| ++++|++.|++..+ +.|+...|...+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 998775 78888888888887 35666666555543
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.49 E-value=0.00041 Score=56.71 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 002814 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (877)
Q Consensus 645 ~~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (877)
...+..+...+...|++++|.+.|+++...+|.+..+..++...+ ..|++++|+..++++++.+| .+...+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 456778888999999999999999999988888776666664444 67899999999999999988 6778888888887
Q ss_pred HhcC
Q 002814 724 WHFG 727 (877)
Q Consensus 724 ~~~g 727 (877)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.38 E-value=0.00055 Score=75.73 Aligned_cols=91 Identities=9% Similarity=0.007 Sum_probs=55.4
Q ss_pred HHHccCCHHHHHHHHHHHHHc-----cccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-C-CHHHHH
Q 002814 165 ELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----GYG-N-TVYAFS 232 (877)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~-~-~~~~~~ 232 (877)
.+..+|++++|+.++++++.. +...+....+++.|+.+|...|++++|+.+++++++. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355677777777777776643 2223334556677777777777777777777666542 211 1 234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 002814 233 ALISAYGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~ 255 (877)
.|...|...|++++|+.+|++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666554
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00059 Score=58.17 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------HH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-------VV 545 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 545 (877)
+...|..+...+.+.|++++|.+.|++.++... .+...|..+..+|.+.|++++|+..|++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 455677777788888888888888888877642 36777888888888888888888888888764 344 44
Q ss_pred HHHHHHHHHhhcCChhhhHHH
Q 002814 546 TYNSIIDAFGRSATTECTVDD 566 (877)
Q Consensus 546 ~~~~li~~~~~~g~~~~a~~~ 566 (877)
.+..+..++...|+.++|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 556666666677776666543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.20 E-value=0.00068 Score=56.93 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhhhh
Q 002814 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (877)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (877)
..|++++|+..|+++++.+| .+..+|..++.+|...|++++|...+.++.+..
T Consensus 19 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34555555556666666777 567788889999999999999999988877653
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.19 E-value=0.0016 Score=56.18 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002814 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253 (877)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (877)
.|++.|+.++... +.+..++..+..+|...|++++|+..|++++..... +..+|..+..+|...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566677776654 445567777777777778888888888777766432 566777777777777777777777777
Q ss_pred HHh
Q 002814 254 MKR 256 (877)
Q Consensus 254 m~~ 256 (877)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.15 E-value=0.0037 Score=50.71 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=45.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
.+..+...+.+.|++++|+..|+.++... +.+..++..+..++.+.|++++|...|+++.+..+. +..++..+..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34445555666666666666666666553 333445566666666666666666666666654322 44555555554
Q ss_pred HHh
Q 002814 238 YGR 240 (877)
Q Consensus 238 ~~~ 240 (877)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.015 Score=60.44 Aligned_cols=49 Identities=6% Similarity=-0.096 Sum_probs=28.7
Q ss_pred cCCChhhHHHHHHHHHc--c---CCHHHHHHHHHHHHHccccCCChHHHHHHHHHHH
Q 002814 152 KLCGADDYTFLLRELGN--R---GEWSKAIQCFAFAVKREERKNDQGKLASAMISIL 203 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (877)
.+.+++.|...+++... . ..+.+|+.+|+++++.. |....++..+..++
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---P~~a~A~A~la~a~ 243 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---PEFTYARAEKALVD 243 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 44566777666655432 2 23467888888888775 44445555444444
No 209
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=96.91 E-value=0.0012 Score=52.68 Aligned_cols=78 Identities=24% Similarity=0.238 Sum_probs=50.7
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCceE
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGRF 832 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~~ 832 (877)
.+|||.+++.+|...+..++.+......... -...+.|+||.|.||. .|-..++..|...|++-. +.+...|.|.+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~-g~~~v~II~GkG~hS~-~g~~~Lk~~V~~~L~~~~--~~~~e~n~G~l 77 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHS--FRFSEIKPGCL 77 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCC----------CHHHHHHHHHHHTT--CCEEEEETTEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEECCCCCCC-CCcchHHHHHHHHHHhCC--CceeeCCCEEE
Confidence 4899999999999999988876543222111 1346889999999973 233458899999999855 55555688887
Q ss_pred Ee
Q 002814 833 IS 834 (877)
Q Consensus 833 ~~ 834 (877)
..
T Consensus 78 ~V 79 (82)
T 3fau_A 78 KV 79 (82)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.76 E-value=0.068 Score=53.25 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCcc-hhHHHHHhhcc-c-cc
Q 002814 624 QEILCILGVFQKMHKLKIKPN---VVTFSAILNACSRC-----NSFEDASMLLEELRLFDNQV-YGVAHGLLMGY-R-DN 692 (877)
Q Consensus 624 ~~~~~A~~~~~~m~~~g~~Pd---~~t~~~ll~a~~~~-----g~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~-~-~~ 692 (877)
....+|..++++.++ +.|+ ...|..|+..|.+. |+.++|.++|+++++++|+. ..+.+.+...+ + .+
T Consensus 177 ~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 466778888999888 6787 45688888888884 99999999999999999964 55554443333 3 58
Q ss_pred hHHHHHHHHHHHhhcCCC--cchhHHHHHHHHHHhcCchhhHHHHHHHh
Q 002814 693 IWVQALSLFDEVKLMDSS--TASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (877)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (877)
+.++|.+.+++++..+|. +.... ...+..++|..++.+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~l--------an~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKL--------LVILSQKRARWLKAHV 295 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHH--------HHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhH--------HHHHHHHHHHHHHHHh
Confidence 899999999999998885 33332 2334455666665543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.73 E-value=0.0045 Score=67.24 Aligned_cols=91 Identities=8% Similarity=0.079 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHH---CCCCCC---H-HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCcchhHHHHHhhccccchHHHH
Q 002814 625 EILCILGVFQKMHK---LKIKPN---V-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQA 697 (877)
Q Consensus 625 ~~~~A~~~~~~m~~---~g~~Pd---~-~t~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A 697 (877)
++++|+.++++.++ .-+.|+ . .+++.|..+|...|++++|..+++++++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------------ 368 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK------------------------ 368 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH------------------------
Confidence 56778888877653 223343 2 4689999999999999999999987762
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhhh
Q 002814 698 LSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (877)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (877)
++++..--+...-...|+.|+.+|+.+|++++|..++.++++
T Consensus 369 --i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 --PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 222222222213456799999999999999999999988764
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.67 E-value=0.0068 Score=50.60 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSM 254 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 254 (877)
++..+..+|.+.|++++|+..|+++++..+. +..+|..+..+|.+.|++++|++.|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444444443222 3334444444444444444444444443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.48 E-value=0.007 Score=65.73 Aligned_cols=89 Identities=6% Similarity=-0.068 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHHHHHHHc-----cccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCC-HHHHHHHH
Q 002814 168 NRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----GY-GNT-VYAFSALI 235 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~-~~~~~~li 235 (877)
..|+|++|+.++++++.. +...+....+++.+..+|...|++++|+.++++++.. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356778888888777653 2223344566777777788888888887777777542 21 122 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 002814 236 SAYGRSGYCQEAISVFNSMKR 256 (877)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~ 256 (877)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777777777777777776653
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.42 E-value=0.17 Score=60.29 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 002814 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (877)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 382 (877)
..++..+.+.|..++|.++.+... .-.......|++++|.++.+.+. +...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~~------~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDES------AEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTCC------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhhC------cHhHHHHHHHHHHHc
Confidence 566666777777777776552211 11334456777888877766542 567777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (877)
|+++.|.+.|.++.. |..+...|...|+.+...++-+...
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777776532 2334444444555554444433333
No 215
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=96.29 E-value=0.013 Score=48.35 Aligned_cols=78 Identities=24% Similarity=0.239 Sum_probs=54.9
Q ss_pred ccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCce
Q 002814 752 SCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLGR 831 (877)
Q Consensus 752 ~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g~ 831 (877)
..+|||.+.+.+|...+..++.+......... --.++.|+||.|.||. .+...+++.|...|++....| ...|.|.
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~-g~~~v~IIhGkG~hS~-~g~~~Lk~~V~~~L~~~~~~~--~egg~Ga 84 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHSFRF--SEIKPGC 84 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEECCCSGGGT-TCTTCHHHHHHHHHHHTTCCE--ECCSTTC
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEEECcCCCCC-CCcchHHHHHHHHHhhCCCcc--ccCCCcE
Confidence 36999999999999999999877653222111 1346899999999984 234678899999999866433 2334444
Q ss_pred EE
Q 002814 832 FI 833 (877)
Q Consensus 832 ~~ 833 (877)
++
T Consensus 85 ~~ 86 (96)
T 2d9i_A 85 LK 86 (96)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.29 E-value=0.014 Score=63.52 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=46.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc-----cccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CC-CHHH
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----GY-GN-TVYA 230 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~~-~~~~ 230 (877)
+..+.+.|++++|++++++++.. +...+....+++.++.+|...|++++|+.++++++.. |. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34444556666666666655532 1112223344555555565666666666555555431 11 11 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 002814 231 FSALISAYGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~ 255 (877)
++.|...|...|++++|+.+|++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555555555555555555555543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.28 E-value=0.0092 Score=49.42 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHccccCCChHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002814 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGK-LASAMISILGRLGKVDLAKNIFETALNEGY 224 (877)
Q Consensus 163 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 224 (877)
...+.+.|++++|++.|+.++... +.+.. ++..+..+|...|++++|.+.|+++++...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 445566777777777777777764 34455 667777777777777777777777776643
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.19 E-value=0.017 Score=47.74 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCcchh-HHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 652 LNACSRCNSFEDASMLLEELRLFDNQVYG-VAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 652 l~a~~~~g~~~eA~~~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
+..+...|++++|.+.|+++.+.+|.+.. +...+...+ ..|++++|++.|+++++.+|
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33444555566666666655555555444 433332222 44555566666666655555
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.064 Score=64.02 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=21.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 415 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (877)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555443221 23445555555555555555555555544
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.97 E-value=0.08 Score=55.06 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 002814 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVT 546 (877)
Q Consensus 473 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 546 (877)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++... +.|...|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 44555555444444455555555555555543 4444454555555555555555555555554 2344443
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.95 E-value=0.042 Score=49.13 Aligned_cols=84 Identities=18% Similarity=0.088 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhcC-C-cchhHHHHHhhcc-ccchHHHHHH
Q 002814 626 ILCILGVFQKMHKLKIKPNVVTFSAILNACSRCN---SFEDASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALS 699 (877)
Q Consensus 626 ~~~A~~~~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~eA~~~~~~~~~~~-~-~~~~~~~~l~~~~-~~~~~~~A~~ 699 (877)
...+.+-|.+....|. ++..+.-.+..++.+.+ ++++|..+|++..+.+ | ..-..++++..++ +.+++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3345556666666554 57777667888889888 6779999999988777 5 4455666665554 8899999999
Q ss_pred HHHHHhhcCCC
Q 002814 700 LFDEVKLMDSS 710 (877)
Q Consensus 700 ~~~~~~~~~~~ 710 (877)
+++++++.+|.
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999999993
No 222
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=95.89 E-value=0.047 Score=48.05 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=56.1
Q ss_pred cccchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCCCCcccccCCCc
Q 002814 751 ESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMGAPFWVANCNLG 830 (877)
Q Consensus 751 ~~~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~~pf~~~~~~~g 830 (877)
...+|||++.+.+|...|..++.+.....+.... ..++.||||.|.||. .|...++..|...|++..- .....|.|
T Consensus 53 ~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g-~~~v~IIhGkG~hS~-~g~~~Lk~~V~~~L~~~~~--~~~e~g~G 128 (135)
T 2vkc_A 53 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG-KPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHSF--RFSEIKPG 128 (135)
T ss_dssp GTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCC-CSEEEEECCSCSSSC-CSCCTHHHHHHHHHHTTTC--EEEECSTT
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEECCCcCCC-CCCchHHHHHHHHHhcCCC--ceeeCCCC
Confidence 3469999999999999999998775533222111 346899999999984 2346788899999998654 33333555
Q ss_pred eEE
Q 002814 831 RFI 833 (877)
Q Consensus 831 ~~~ 833 (877)
.+.
T Consensus 129 ~~~ 131 (135)
T 2vkc_A 129 CLK 131 (135)
T ss_dssp EEE
T ss_pred eEE
Confidence 554
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.67 E-value=0.084 Score=57.25 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADC---VSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----GL-KAD-VVLYS 513 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~ 513 (877)
.+.+.|++++|+.++++.++.. +.++ ..+++.|...|...|++++|..+++++++. |. .|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665431 1111 345555666666666666666666555431 11 111 23455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 002814 514 ALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.|...|...|++++|+.+|++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555555554
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.45 E-value=0.043 Score=49.07 Aligned_cols=84 Identities=7% Similarity=-0.027 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHhhcc-c---cchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHhcCchhhHHH
Q 002814 660 SFEDASMLLEELRLFDNQVYGVAHGLLMGY-R---DNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQL 734 (877)
Q Consensus 660 ~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 734 (877)
.+..+++.|.+....++.+..+..++.+++ + ..+.++++.+++++.+.+ |..+...+..|+-+|.+.|++++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 345677778777776777777777776554 3 447889999999999988 54567888889999999999999999
Q ss_pred HHHHhhhhh
Q 002814 735 VVLEGKRRQ 743 (877)
Q Consensus 735 ~~~~~~~~~ 743 (877)
+++..++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999877643
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.37 E-value=0.12 Score=43.24 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=54.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcccc----CCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREER----KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 224 (877)
+++++..+...+.+.+++..|+..|+.+++.... ......++..+..++.+.|+++.|...++++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4667778889999999999999999998875321 123456778888888888888888888888877643
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.21 E-value=0.13 Score=41.96 Aligned_cols=65 Identities=23% Similarity=0.043 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002814 192 QGKLASAMISILGRLGK---VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (877)
Q Consensus 192 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (877)
+..++..+..++...++ .++|..+++++++..+. ++.+...+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455555555543333 46666666666665433 5666666666666666666666666666654
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.07 E-value=0.1 Score=42.58 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCcchhHHHHHhhc-cccchHHHHHHHHHHHhhcCC
Q 002814 644 NVVTFSAILNACSRCNS---FEDASMLLEELRLFDNQVYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 644 d~~t~~~ll~a~~~~g~---~~eA~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~ 709 (877)
|...+..+..++...++ .++|..+|+++++.+|++......+... +..|++++|+..|+++++.+|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44445555555543332 5666666666666666665554444222 255666666666666666665
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.93 E-value=0.16 Score=42.49 Aligned_cols=70 Identities=7% Similarity=-0.091 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 508 DVVLYSALIDALCKNGLVESAVSLLDEMTKEG------IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
+..-+..|...+.+.|+++.|...|+...+.- -.+...++..|..++.+.|++++|+..+++++...|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 44445566666666777777777666665420 11234466777777777777777777777777766654
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.75 E-value=1.2 Score=40.72 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=22.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
..|+++.|.++.+++ .+...|..|.+...+.|+++-|.+.|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555555554433 134455555555555555555555555543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.73 E-value=0.16 Score=50.59 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHH
Q 002814 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRL-----GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS-GYCQ 245 (877)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~ 245 (877)
..+|...+++++..++.. .+..++..+...|.+. |+.+.|++.|+++++....-+..++......+++. |+.+
T Consensus 179 l~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 356777777777775221 1456777788888774 88888888888888765543466777777777774 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHH
Q 002814 246 EAISVFNSMKRYNLK--PNLVTYNA 268 (877)
Q Consensus 246 ~A~~~~~~m~~~g~~--p~~~~~~~ 268 (877)
+|.+.+++....... |+....|.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 888888888876655 65544443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.72 Score=42.22 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002814 345 CKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (877)
Q Consensus 345 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (877)
.+.|+++.|.++.+++. +...|..|.+.....|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555544431 4445555555555555555555555443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.97 E-value=2.7 Score=36.11 Aligned_cols=138 Identities=11% Similarity=0.122 Sum_probs=71.3
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALN 390 (877)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~ 390 (877)
-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356667777777666654 25555555555555555555555555544332 111 11222222222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (877)
Q Consensus 391 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 470 (877)
.+-.+ ..+..-+..-++.+...|+-|+-.+++..+.... ++++...-.+..+|.+.|+..+|.+++.+.-++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 22221 1122233344555566666666666666643322 55666666666666666666666666666666654
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.87 E-value=1.2 Score=39.16 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=77.8
Q ss_pred cCCChhhHHHHHHHHHccCCH------HHHHHHHHHHHHccccC--CCh---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002814 152 KLCGADDYTFLLRELGNRGEW------SKAIQCFAFAVKREERK--NDQ---GKLASAMISILGRLGKVDLAKNIFETAL 220 (877)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (877)
.+.++|.|...+..+-+.|+. ++.+++|++++..-+.. ..+ ..++...+ .+...++.++|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 345678887777777777888 88899999998763210 001 11111111 1234478889999999887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002814 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (877)
Q Consensus 221 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 272 (877)
+..-. =..+|......-.+.|++..|.+++.+....+.+| .......|.-
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 75333 27777777777788899999999999888877664 3444444443
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.70 E-value=2.7 Score=36.09 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCC
Q 002814 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (877)
Q Consensus 301 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 364 (877)
.+...++.....|+-++-.+++..+.. ..+++....-.+..+|.+.|+..+|.+++.+.-++|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333444444444444444444444322 122334444444444444444444444444444443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.36 E-value=0.36 Score=41.38 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHhcC-C-cchhHHHHHhhcc-ccchHHHHHHHHHHHhhcCC
Q 002814 643 PNVVTFSAILNACSRCNSFED---ASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (877)
Q Consensus 643 Pd~~t~~~ll~a~~~~g~~~e---A~~~~~~~~~~~-~-~~~~~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (877)
++..+--.+..++.++.+..+ ++.+++++...+ | .....++.+..++ +.|++++|.+.++.+++.+|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 444443345555555554444 555555554433 2 2222233332222 45555555555555555555
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.31 E-value=20 Score=42.22 Aligned_cols=310 Identities=10% Similarity=-0.005 Sum_probs=148.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 002814 237 AYGRSGYCQEAISVFNSMKRYNLKPNL--VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-------QPDRITFNSLLA 307 (877)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~-------~p~~~t~~~ll~ 307 (877)
+....|+.++++.+++.....+-..+. ..-..+.-+....| ..+++..++...+...- .+....-..|.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag-~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG-FGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 455667777777777766532101122 22223333344555 33456666666554211 011122223323
Q ss_pred HHHhCCC-HHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH--HH
Q 002814 308 VCSRGGL-WEAARNLFNEMVHRGIDQDIFT--YN--TLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG--YA 380 (877)
Q Consensus 308 ~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~--~~ 380 (877)
++.-.|. -+++.+.+..++... +..+ .. +|...|+-.|+-+....++..+.+.. +......+.-+ +.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3332332 234445555554421 2221 12 22333445566666666666655431 33333333333 34
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002814 381 KAGRLDDALNMFSEMKFLGIGLDRVSYN---TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (877)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 457 (877)
..|+.+.+..+++.+.... .| ..-|. ++.-+|+..|+......++..+.+.. ..++.....+.-++...|+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 5677777777777776542 11 22222 33345667778766666777776542 2233333333334444666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC-------ChHH
Q 002814 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY-KEAMQIFREFKQAGLKADVVLYSALIDALCK--NG-------LVES 527 (877)
Q Consensus 458 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g-------~~~~ 527 (877)
+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++..+.. .+|..+-..-+-++.. .| ++..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 777777666553 33443334444444444443 677778888765 2454444333333333 22 3334
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHhhcCCh
Q 002814 528 AVSLLDEMTKE-GIRPNVVTYNSIIDAFGRSATT 560 (877)
Q Consensus 528 A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~ 560 (877)
.++.+...... .-.++...-..+..+....|.=
T Consensus 689 ~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 689 INKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 44444444332 1123334444555566555543
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.00 E-value=15 Score=39.50 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCH--HHH
Q 002814 479 TLIDVYSKGGLYKEAMQIFREFKQ--AGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTK----EGIRPNV--VTY 547 (877)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~ 547 (877)
.|...|...|++.+|..++..+.. .|.... ...|...+..|...+++.+|..+++++.. ....|+. ..+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 344555555556665555555532 111111 23444455556666666666666665531 1111221 233
Q ss_pred HHHHHHHhhcCChhhhHHHHHHHhh
Q 002814 548 NSIIDAFGRSATTECTVDDVERDLG 572 (877)
Q Consensus 548 ~~li~~~~~~g~~~~a~~~~~~~l~ 572 (877)
...+..+...+++.+|.+.+.++..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4445555556666666555555444
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.00 E-value=11 Score=37.99 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHH
Q 002814 337 YNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM----FSEMKFLGIGLDRVSYNTVLS 412 (877)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~~~~~li~ 412 (877)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ ++-..+.++++|......|+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4445555666667777766654321 123344554444443 333344566666666666665
Q ss_pred HHHHcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 413 IYAKLGRFE-EALLVCKEM----ESSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 413 ~~~~~g~~~-~A~~~~~~m----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
.+.....-+ .-.++.+++ .+.| -.-|+.....+...|.+.|++.+|...|-.- -.-|...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHH
Confidence 554432111 011222222 2222 1247788888889999999999988877521 1113455555554444
Q ss_pred hc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 486 KG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 486 ~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+. |...++--+.- .++ --|...|+...|..+|+...+
T Consensus 177 ~~~~~~~~~e~dlf~~--------------RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 177 CQVDDIEDSTVAEFFS--------------RLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHTTCCCHHHHHHHHH--------------HHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHHH--------------HHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 43 44433221111 112 235567888888888877653
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.55 E-value=2.8 Score=36.96 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 002814 436 RKDAVTYNALLGGYGKQGKY------DEVRRMFEQMKADCVSPNL----LTYSTLID---VYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~----~t~~~li~---~~~~~g~~~~A~~~~~~m~~ 502 (877)
+.|..+|-..+....+.|+. ++.+++|++.... ++|+. ..|.-|-- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555666666666656666 6666666666553 44431 11111111 11233678888888888866
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 503 AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSII 551 (877)
Q Consensus 503 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 551 (877)
.+-+- ...|......-.+.|++..|.+++.+.+..+..|. ..+...+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 53333 67777777777788888888888888887765543 3333333
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.54 E-value=1.1 Score=38.35 Aligned_cols=80 Identities=6% Similarity=-0.072 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHhhcc----ccchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHhcCchhhHHHHH
Q 002814 662 EDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQLVV 736 (877)
Q Consensus 662 ~eA~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 736 (877)
..+.+.|.+....++.+..+..++.+++ ...+..+++.+++.+.+.+ |..+......|+-++.+.|++++|..++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444444444444444554433 2345556777777776655 3335556666677777777777777776
Q ss_pred HHhhh
Q 002814 737 LEGKR 741 (877)
Q Consensus 737 ~~~~~ 741 (877)
+..++
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.46 E-value=17 Score=37.07 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHH
Q 002814 337 YNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF----SEMKFLGIGLDRVSYNTVLS 412 (877)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~~~~~li~ 412 (877)
|.++..-|.+.+++++|++++..-- ..+.+.|+...|.++- +-+.+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455556777788888887764321 1234445554444443 33344566677766666666
Q ss_pred HHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002814 413 IYAKLGRFE-EALLVCKEME----SSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (877)
Q Consensus 413 ~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 485 (877)
.+.....-+ .=..+.++++ +.| -.-|......+...|.+.+++.+|...|- . |-.+....+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 655444311 1111222221 112 23467777888888888899888888773 2 33333456655554444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
+.+...++ |...-.+++ -|...++...|..+|+...+
T Consensus 179 ~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 43321111 222222222 35567778888777766654
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.20 E-value=34 Score=40.22 Aligned_cols=256 Identities=9% Similarity=0.019 Sum_probs=127.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhCCC-------CCCHHHHHHHHH
Q 002814 307 AVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-------SPNVVTYSTMID 377 (877)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~pd~~~~~~li~ 377 (877)
-+....|+.++++.+++..+..+-..+ +..-..+.-+...+|..+++.+++.......- .+.+..-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 346677888888777776654211122 33334444455566666677776666554310 011122222322
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHH
Q 002814 378 GYAKAGR-LDDALNMFSEMKFLGIGLDRV----SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL--GGYG 450 (877)
Q Consensus 378 ~~~~~g~-~~~A~~~~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~~~~ 450 (877)
+++-.|. -+++.+.+..+.... +.. .-.+|...+.-.|+-+....++..+.+.. +..+...+. -++.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3333332 245666666666542 211 11233334456677777777777666532 333333333 3344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 002814 451 KQGKYDEVRRMFEQMKADCVSPNLLTYS---TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (877)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (877)
..|+.+.+..+.+.+.... .| ..-|. ++.-+|+-.|+.....++++.+.+.. ..++.....+.-++...|+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 6678787777777776641 11 22232 33445667778777767887777642 2233333333334445677666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCh-hhhHHHHHHHhh
Q 002814 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATT-ECTVDDVERDLG 572 (877)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~l~ 572 (877)
+.++++.+.+.+ .|...--..+.-+....|.- .++++.+.+...
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 677776665542 22222222222222323332 455665555543
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.08 E-value=1.6 Score=38.01 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHHhcCchhhHHHHHHHhh
Q 002814 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (877)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (877)
+++.+++.+...+|.........|+-++.++|++++|.++.+..+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444443344444445555555555555555554433
No 244
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=87.47 E-value=1.1 Score=35.34 Aligned_cols=63 Identities=29% Similarity=0.257 Sum_probs=46.4
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCC--CCcccccCC
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMG--APFWVANCN 828 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~--~pf~~~~~~ 828 (877)
.+|||.+...+|...+..++.+-.. .| -.++.|++|.|. ..+++.|...|+.-. .-|+.+..+
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~---~g---~~~v~IIHGkG~-------GvLr~~V~~~L~~~~~V~~f~~a~~~ 70 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARA---LG---LSTLRLLHGKGT-------GALRQAIREALRRDKRVESFADAPPG 70 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHH---TT---CSEEEEECCSTT-------SHHHHHHHHHHHHCTTEEEEEECCTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH---CC---CCEEEEEECCCc-------hHHHHHHHHHHhcCCceeEEEEcCcc
Confidence 5899999999999999998876442 22 246899999886 368899999998743 234544443
No 245
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=87.42 E-value=0.69 Score=40.45 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=45.7
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHhhhccCCCCCceeEEeeccccccccCchhhHHHHHHHHhcCC
Q 002814 753 CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLLSILTGWGKHSKVVGDGALRRAVEVLLTGMG 819 (877)
Q Consensus 753 ~~dl~~~s~g~a~~~~~~w~~~~~~~~~~~~~~p~~~~i~~g~g~h~~~~~~~~~~~~i~~~l~~l~ 819 (877)
.+|||.|...+|..++..++.+-.. .| -.++.|++|.|.||. .+...+++.|...|+...
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~~a~~---~g---~r~V~IIHGKG~gs~-~~~~vLk~~V~~wL~~~~ 108 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQQALA---DG---LRNVLIIHGKGRDDK-SHANIVRSYVARWLTEFD 108 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHH---TT---CSEEEEECCCCSSTT-SHHHHHHHHHHHHHHTST
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH---CC---CCEEEEEECCCCCCC-CchHHHHHHHHHHHhcCC
Confidence 6999999999999999999876432 22 236889999999862 112367889999998843
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.01 E-value=3 Score=48.03 Aligned_cols=130 Identities=14% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------CCCCCCHH--
Q 002814 231 FSALISAYGRSGY-CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-------NGVQPDRI-- 300 (877)
Q Consensus 231 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-------~g~~p~~~-- 300 (877)
-..|+..+...|+ ++.|+.+|+++.+....-+......++..+...+.+--+|.+++.+.++ .-...+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555555 4778888888876432212222223333333322122345555544432 11111211
Q ss_pred --------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 002814 301 --------TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 301 --------t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
....=.+.|...|+++.|+++-++..... +.+-.+|..|..+|.+.|+++.|+-.++-+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111344667888999998888888753 3357788999999999999999988888775
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.94 E-value=0.02 Score=60.69 Aligned_cols=376 Identities=12% Similarity=0.164 Sum_probs=204.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002814 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (877)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 233 (877)
.+|..|..++....+.|.|++-++.+.-+.+.. . ...+=+.|+-+|++.+++.+-.+++. .||+.-...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k---e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~ 149 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R---ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 149 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C---STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c---ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHH
Confidence 357778888888888999988888776544332 1 22344678888999888776544432 245444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 002814 234 LISAYGRSGYCQEAISVFNSMKRYN--------------------LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (877)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~ 293 (877)
+.+-|...|.++.|.-+|..+.... -.-+..||-.+-.+|...+ ++.-|.-.--.++-.
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~-EfrLAqicGLniIvh 228 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK-EFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC-TTTTTTHHHHHHHCC
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch-HHHHHHHhcchhccc
Confidence 6677777777777776665542211 0236678888888888888 776665443333321
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC-CCCC-----
Q 002814 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NISP----- 367 (877)
Q Consensus 294 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p----- 367 (877)
+| -...|+..|-..|.+++.+.+++.-+.. -......|+-|.-.|+|- +.++-.+.++..-.+ +++-
T Consensus 229 ---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 ---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp ---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred ---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 1234566677788888888887776632 124567777777777765 344444444433222 1111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHH---------------HcC
Q 002814 368 -NVVTYSTMIDGYAKAGRLDDALNMF-------------SEMKFLGIGLDRVSYNTVLSIYA---------------KLG 418 (877)
Q Consensus 368 -d~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~g~~pd~~~~~~li~~~~---------------~~g 418 (877)
....|.-++-.|++-.++|.|.... ++...+ ..|...|-.-|..|. ..=
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prl 379 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 379 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTC
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccC
Confidence 2234677777777777777664321 111111 223333333333332 222
Q ss_pred CHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHHcCCHHHHHH------------HHHHHHHCCCCCCHHH
Q 002814 419 RFEEALLVCKEMES----------SGIRKDAVTYNALLGGYGKQGKYDEVRR------------MFEQMKADCVSPNLLT 476 (877)
Q Consensus 419 ~~~~A~~~~~~m~~----------~g~~~~~~~~~~li~~~~~~g~~~~A~~------------~~~~m~~~g~~p~~~t 476 (877)
+...+.++|++.-. ..-..+..+-.++-+.|....+++.-+. +-+++.+. .-...
T Consensus 380 Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eF 456 (624)
T 3lvg_A 380 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEF 456 (624)
T ss_dssp CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHH
T ss_pred ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHH
Confidence 33333333332110 0012234444556666666666554322 22222221 01122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 556 (877)
-..-...|.+.+++++++.+.++ ...|.-.|......|+.+-|.++++-..+.| +...|.+.+-.|..
T Consensus 457 RrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYd 524 (624)
T 3lvg_A 457 RRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYD 524 (624)
T ss_dssp HHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhh
Confidence 22333456667777777655321 1122333444556777777888888777754 55667777777766
Q ss_pred cCChhhhHH
Q 002814 557 SATTECTVD 565 (877)
Q Consensus 557 ~g~~~~a~~ 565 (877)
.=+.+.+++
T Consensus 525 LlrpDvVlE 533 (624)
T 3lvg_A 525 LLRPDVVLE 533 (624)
T ss_dssp SSSCHHHHH
T ss_pred ccChHHHHH
Confidence 666665544
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.79 E-value=7 Score=44.96 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC------CCCC-CHH
Q 002814 194 KLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY-CQEAISVFNSMKRY------NLKP-NLV 264 (877)
Q Consensus 194 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-~~~ 264 (877)
.+...++..+.-.++ .+.|..+|+++.+.....++....++|..+.+.+. --+|+.++.+..+. ...+ +..
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 355667777766777 58899999999887543333333444444444432 23566666554321 1111 211
Q ss_pred ----------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002814 265 ----------TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (877)
Q Consensus 265 ----------~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 326 (877)
..+.-.+-|...| +++.|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRG-DYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccC-cHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111123355677 9999999999998763 3367899999999999999999998887763
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.44 E-value=13 Score=39.33 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 002814 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV-DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (877)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 246 (877)
..|+.+.|.+.+..++..-..+.-.. . . ...+ .....-+++.. ..+...++..+...|++++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~-~--------~-~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDD-L--------R-DFQFVEPFATALVEDK-------VLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGG-G--------T-TSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTTCHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCC-C--------C-chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHH
Confidence 45788888888888876521111100 0 0 0111 11122222221 1244557777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 002814 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITFNS 304 (877)
Q Consensus 247 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 304 (877)
|+..+..+..... -+...|..+|.++.+.| +..+|++.|+.+.+ .|+.|...+-..
T Consensus 190 a~~~l~~~~~~~P-~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 190 VIAELEALTFEHP-YREPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8888888776432 27778888888888888 88888888887654 488888776543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.10 E-value=3.7 Score=43.56 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYN 548 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 548 (877)
...++..+...|++++|...+..+.... +.+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456777888999999999888887765 45788999999999999999999999988754 48888876543
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.95 E-value=5.1 Score=34.46 Aligned_cols=80 Identities=8% Similarity=-0.037 Sum_probs=40.4
Q ss_pred HHHHHHHH-HC-CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCc-chhHHHHHhhcc-ccchHHHHHHHHH
Q 002814 630 LGVFQKMH-KL-KIKPNVVTFSAILNACSRCNS---FEDASMLLEELRLFDNQ-VYGVAHGLLMGY-RDNIWVQALSLFD 702 (877)
Q Consensus 630 ~~~~~~m~-~~-g~~Pd~~t~~~ll~a~~~~g~---~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~A~~~~~ 702 (877)
+..|++.- .+ +-.|...|--.+..++.++.. ..+|+.+++++...++. .-..++.+..|+ +.|++++|.+..+
T Consensus 23 L~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 23 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444443 22 333444443345555555544 34566666666554442 223333333333 5666666666666
Q ss_pred HHhhcCC
Q 002814 703 EVKLMDS 709 (877)
Q Consensus 703 ~~~~~~~ 709 (877)
.+++.+|
T Consensus 103 ~lL~~eP 109 (134)
T 3o48_A 103 TLFEHER 109 (134)
T ss_dssp HHHTTCT
T ss_pred HHHhhCC
Confidence 6666666
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.90 E-value=22 Score=43.61 Aligned_cols=131 Identities=11% Similarity=0.058 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002814 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515 (877)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 515 (877)
.-|..++..+.+.|.++.+.++-...++....-+. ..|..+...+.+.|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34555666666666666666666555543211111 2456666666667777777666666655432 23444455
Q ss_pred HHHHHHcCC------------hHHHHHHHHHHHH-C-CCCCCHHHHHHHHHHHhhcCChhhhHHHH-HHHhh
Q 002814 516 IDALCKNGL------------VESAVSLLDEMTK-E-GIRPNVVTYNSIIDAFGRSATTECTVDDV-ERDLG 572 (877)
Q Consensus 516 i~~~~~~g~------------~~~A~~~~~~m~~-~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~l~ 572 (877)
+..+|..|. .++..+++....+ . .+.....-|..|-.-+...|++..|..++ +++..
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 555554443 3444455443221 1 11111123445555557788888887664 44433
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.10 E-value=63 Score=34.63 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 476 TYSTLIDVYSKGGLYKEAMQIFREFKQ----AGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 476 t~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
.+..-+..|...+++.+|..+++++.. ....|+ ...|..++..+...+++.+|.+.|.++.
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555556666666655555421 111111 1344555556666666666666666654
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.02 E-value=49 Score=33.34 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 333 DIFTYNTLLDAICKGAQMDLAFEIMA 358 (877)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (877)
|......+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66777777777888888888777664
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.39 E-value=11 Score=32.37 Aligned_cols=73 Identities=12% Similarity=0.017 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhhh
Q 002814 506 KADVVLYSALIDALCKNGLV---ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (877)
.|+..+--.+..++.+..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|.+..+..|+..|++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 45666666666677766553 45677777776544211234555666677777888888777777777777653
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.97 E-value=21 Score=43.91 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=101.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------------
Q 002814 268 AVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI----------------- 330 (877)
Q Consensus 268 ~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~----------------- 330 (877)
.++..+...+ ..+.+.++... ++-+...-..+..+|...|++++|.+.|++... |+
T Consensus 817 ~l~~~l~~~~-~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFK-QYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHS-CTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhh-hHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 3455555556 55555554332 233555545667788888999999888866421 11
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 002814 331 ------DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV----VTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400 (877)
Q Consensus 331 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 400 (877)
..-..-|..++..+.+.+.++.++++-....+....-+. ..|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 112345788899999999999988877655543211122 2588899999999999999999988877643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH
Q 002814 401 GLDRVSYNTVLSIYAKLGRFEEALL 425 (877)
Q Consensus 401 ~pd~~~~~~li~~~~~~g~~~~A~~ 425 (877)
-...+..|+..+|..|..+.-..
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhC
Confidence 46678888888888888776554
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.35 E-value=24 Score=30.77 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCChhhhHHHHHHHhhhhhhh
Q 002814 506 KADVVLYSALIDALCKNGL---VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (877)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (877)
.++..+--.+..++.+..+ ..+++.++++....+..-.....-.|.-++.+.|++++|.+..+..|+..|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3455555555555555544 23455666665543221122233344556666666666666666666666554
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.98 E-value=34 Score=30.71 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=36.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCC------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKND------QGKLASAMISILGRLGKVDLAKNIFETALN 221 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (877)
-++.+...+.|+.|+-+.+.++......++ ...++..+.+++...|++..|...|++++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345566677777777776665543321111 122456667777788888888888877643
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.83 E-value=19 Score=29.21 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 489 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
+.-+..+-++.+....+.|+.....+.+.+|-+.+++.-|+++|+-.+.+ +.+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 45566666677777777888888888888888888888888888877754 33334466666644
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.13 E-value=76 Score=32.27 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=52.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHHHH
Q 002814 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVF----NSMKRYNLKPNLVTYNAVIDAC 273 (877)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~ 273 (877)
++..-|.+.+++++|++++-... ..+.+.|+...|.++- +-+.+.++++|......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444666777777776654332 1233445554443333 3334445556665555555555
Q ss_pred HcCCCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002814 274 GKGGVDFKHVVEIFDDMLR----NG--VQPDRITFNSLLAVCSRGGLWEAARNLF 322 (877)
Q Consensus 274 ~~~g~~~~~a~~~~~~m~~----~g--~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 322 (877)
......-..-..+.+++++ .| ..-|......+...|.+.+++.+|+.-|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4433100011222222221 11 2234455555666666666666666554
No 261
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.61 E-value=0.0072 Score=63.98 Aligned_cols=231 Identities=16% Similarity=0.188 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 274 (877)
+|+.|..+....+++.+|++-|-++ .|+..|..+|.+..+.|.+++-+..+.-.++..- +...=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 5666666666666666666544321 2444566666666666666666666655544322 3333345666666
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002814 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (877)
Q Consensus 275 ~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 354 (877)
+.+ ++.+..+++ . .||..-...+.+-|...|.++.|.-+|..+. -|.-|..++.+.|++..|.
T Consensus 128 k~~-rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 128 KTN-RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TSC-SSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred hhC-cHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 666 443322221 1 2444444555666666666666655553322 2344455555666666665
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (877)
Q Consensus 355 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 434 (877)
+.-++. -++.||..+-.+|...+.+.-|.-.--.++-. +| -...++..|-..|.+++-+.+++.-....
T Consensus 191 daArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 191 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 433322 26678888888898888887775554443321 11 12345667788888888888888776433
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002814 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (877)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (877)
+.....|+-|.-.|+|- +.++..+.++
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 56788888888888765 3444444433
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.72 E-value=13 Score=33.43 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=24.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 002814 158 DYTFLLRELGNRGEWSKAIQCFAFAVKRE 186 (877)
Q Consensus 158 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 186 (877)
.+..+...+...|+|.+|...|+.+++..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999987654
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.42 E-value=32 Score=36.78 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHH--HH
Q 002814 195 LASAMISILGRLGKVDLAKNIFETALNE--GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR---YNLKPNLVT--YN 267 (877)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~--~~ 267 (877)
+...++..|.+.|+++.|.+.|.++... +...-...+-.+|+.+...+++..+...+.+... .+..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4456666677777777777777666543 2222355666666667677777777666666542 222222211 01
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH
Q 002814 268 AVIDACGKGGVDFKHVVEIFDDMLR 292 (877)
Q Consensus 268 ~ll~~~~~~g~~~~~a~~~~~~m~~ 292 (877)
.-...+...+ ++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r-~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVR-NFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hHHHHHHHHHHHhc
Confidence 1111123445 67777777666554
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.92 E-value=61 Score=34.55 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---CCCCCCHHH--
Q 002814 229 YAFSALISAYGRSGYCQEAISVFNSMKRY--NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR---NGVQPDRIT-- 301 (877)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~---~g~~p~~~t-- 301 (877)
.++..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+ ++..+...+.++.. .+..++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 36677899999999999999999999863 33334667888888888888 99999999988753 333333321
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHR 328 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~ 328 (877)
...-+..+...+++..|.+.|-+....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111122344678999999988887654
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.41 E-value=21 Score=28.95 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002814 422 EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (877)
Q Consensus 422 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (877)
+..+-+..+...++.|++.+..+.+.+|-+.+++..|.++|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444443
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.98 E-value=30 Score=29.67 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002814 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (877)
Q Consensus 489 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 553 (877)
+.-+..+-++.+....+.|+.....+.+.+|-+.+++.-|+++|+-.+.+ +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34456666677777778888888888899999999999999988888754 34445567766654
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.60 E-value=1.9e+02 Score=32.35 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=48.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 241 (877)
-+..+.+.++|...+.+|.. .+.+...-.....+....|+-.+|......+-..|.. ....+..|+..+.+.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHhccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence 56667777888777765432 2344455556677777788877777777776655432 445677777777766
Q ss_pred CCHH
Q 002814 242 GYCQ 245 (877)
Q Consensus 242 g~~~ 245 (877)
|.+.
T Consensus 150 g~lt 153 (618)
T 1qsa_A 150 GKQD 153 (618)
T ss_dssp TCSC
T ss_pred CCCC
Confidence 6543
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.96 E-value=24 Score=34.50 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002814 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (877)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (877)
+.+.|++++|++.....++.. |.+...-..++..||-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666665555553 444555555666666666666666655555543
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.76 E-value=1.6e+02 Score=30.66 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=87.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-C-C--CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHchhCCCCCCHHHH----
Q 002814 302 FNSLLAVCSRGGLWEAARNLFNEMVHR-G-I--DQDIFTYNTLLDAICKG-AQMDLAFEIMAEMPAKNISPNVVTY---- 372 (877)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~m~~~-g-~--~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~~~---- 372 (877)
...|...|.+.|+.++..+++...... + + .-.......|++.+... +..+.-.++..+..+..-. +..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345666667777776666666554322 0 0 01133345555555443 2233333333333211000 11122
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHH
Q 002814 373 --STMIDGYAKAGRLDDALNMFSEMKFLGIGLD-----RVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKDAVTYN 443 (877)
Q Consensus 373 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~ 443 (877)
.-++..|...|++.+|.+++.++.+.=-..| ...|..-+..|...+++.++...+...... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2467788888888888888887765311112 233555567788888888888888766432 2224443332
Q ss_pred HH----HHHHH-HcCCHHHHHHHHHHHH
Q 002814 444 AL----LGGYG-KQGKYDEVRRMFEQMK 466 (877)
Q Consensus 444 ~l----i~~~~-~~g~~~~A~~~~~~m~ 466 (877)
.+ ..++. ..+++..|...|-+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22 22345 6788888888777664
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.58 E-value=34 Score=30.19 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002814 210 DLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262 (877)
Q Consensus 210 ~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 262 (877)
+++..+|..|...|+... ...|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346777777777665533 55666667777777777777777777777666653
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.64 E-value=1.9e+02 Score=30.27 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHchhC--CCCCCHHHHHHH-
Q 002814 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQD-----IFTYNTLLDAICKGAQMDLAFEIMAEMPAK--NISPNVVTYSTM- 375 (877)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~l- 375 (877)
-|+..|...|++.+|.+++.++.+.=-..| ..+|..-+.+|...+++.++...+...... .+.++......+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777777777777777777765310111 334555566667777777777766655422 111222222111
Q ss_pred ---HHHHH-HcCCHHHHHHHHHHH
Q 002814 376 ---IDGYA-KAGRLDDALNMFSEM 395 (877)
Q Consensus 376 ---i~~~~-~~g~~~~A~~~~~~m 395 (877)
...+. ..+++.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 12234 566777777666654
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=56.87 E-value=38 Score=29.03 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002814 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (877)
Q Consensus 423 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (877)
..+-++.+...++.|++.+..+.+.+|-+.+++..|.++|+-++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444455555555555555555555555555555443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.74 E-value=69 Score=29.74 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=40.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 002814 206 LGKVDLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261 (877)
Q Consensus 206 ~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 261 (877)
++...++..+|..|...|+.-. ...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446688888888877766533 5667777777778888888888888877766665
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.50 E-value=18 Score=35.33 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=71.1
Q ss_pred HHHhccCCchhHHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChH
Q 002814 131 HVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVD 210 (877)
Q Consensus 131 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (877)
.+++.+.-.+++..+...+...+.+.+.-..++.-||-.|+|++|.+-++...+..+.......+|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH--------
Confidence 445555556677777778888888888888999999999999999999998888753222222233333322
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 002814 211 LAKNIFETALNEG-----YGNTVYAFSALISAYG--RSGYCQEAISVFNSMKR 256 (877)
Q Consensus 211 ~A~~~~~~~~~~g-----~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 256 (877)
+..=.++..-+ +.....-...|+.+.. ..|+.++|.++-+.+.+
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11112222211 1112233344555443 45888888888777754
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.67 E-value=83 Score=25.37 Aligned_cols=49 Identities=6% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002814 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (877)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (877)
+...|+|++|..+.+.+- .||...|-+|-. .+.|..+++..-+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344455555555544433 345555544432 2444444444444444433
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.62 E-value=81 Score=25.41 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=25.6
Q ss_pred HHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002814 343 AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (877)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 399 (877)
.+...|+|++|..+.+.+- .||...|-+|-. .+.|..+++..-+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555665555554443 355555544432 34555555555554554444
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.50 E-value=1.3e+02 Score=30.80 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRL 673 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (877)
...++.-|...|+.+||.+.++++..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC
Confidence 57788889999999999999999864
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.35 E-value=88 Score=29.04 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002814 420 FEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (877)
Q Consensus 420 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 472 (877)
..++..+|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555554432 23444555555555555555555555555554444
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.35 E-value=78 Score=32.59 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL--VESAVSLLDEMTKEGIRPNVVT 546 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~ 546 (877)
.+.++.=|...|+.++|.+.++++..-.+. ..+....+..++-+.++ .+...+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 466777788888888888888888532211 23344555555554433 3456677777776665544333
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.22 E-value=58 Score=32.79 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 002814 648 FSAILNACSRCNSFEDASMLLEELRL 673 (877)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (877)
...++.-|...|+.+||.+.++++..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~ 194 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV 194 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 45788888888999999999998864
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.62 E-value=1.4e+02 Score=27.44 Aligned_cols=109 Identities=10% Similarity=0.043 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002814 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (877)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 516 (877)
+|..+-...+.++.+.|+.+ +...+.++.+ .++...-...+.++.+.|.. ++...+..+.+ .++...-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444555555555432 3333333332 23544444555555555543 23334444433 24555555556
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 002814 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS 557 (877)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 557 (877)
.++.+.|. .++...+.++.+. ++..+-...+.++.+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 66666654 4455555555542 3444444444444443
No 282
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=48.12 E-value=82 Score=25.41 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=18.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002814 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (877)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (877)
...|++++|..+.+.+- .||.+.|-+|.. .+.|..+++..-+.++.
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 34444444444433221 344444443332 23444444444444443
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.71 E-value=61 Score=30.67 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002814 210 DLAKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262 (877)
Q Consensus 210 ~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 262 (877)
+++..+|..|...|+.-. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 577889999988877644 66788888888899999999999999888776664
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.22 E-value=55 Score=29.34 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002814 212 AKNIFETALNEGYGNT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262 (877)
Q Consensus 212 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 262 (877)
+..+|..|...|+... ...|......+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5555666655554432 44455555555566666666666666655555543
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.73 E-value=1.3e+02 Score=26.46 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH
Q 002814 245 QEAISVFNSMKRYNLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR 299 (877)
Q Consensus 245 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~ 299 (877)
+++.++|..|...|+-- -...|......+-..| ++++|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g-~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQG-ELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCccHH
Confidence 44788888887766543 3455666666677777 888888888888887766643
No 286
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=42.95 E-value=80 Score=25.42 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002814 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (877)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (877)
||.+.|-+|.. .+.|..+++..-+.++..
T Consensus 68 pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 68 PALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp GGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44444443322 244444444444444433
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.25 E-value=1.1e+02 Score=30.62 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCC
Q 002814 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL--VESAVSLLDEMTKEGIR 541 (877)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 541 (877)
...++.-|...|+.++|.+.++++..-.+. ....+..+..++-+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 346677777788888888888877421111 22344444445444332 34455666666655544
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.96 E-value=68 Score=30.33 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCC-cchhHHHHHHHHHHhcCchhhHHHHHHHhhhhhchh
Q 002814 696 QALSLFDEVKLMDSS-TASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (877)
Q Consensus 696 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (877)
++..+|.-|...+.. .-+.+|...+..|...|++.+|..++..|++++..+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455666666554442 457899999999999999999999999999988776
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.49 E-value=3.5e+02 Score=27.09 Aligned_cols=50 Identities=10% Similarity=-0.082 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhcCChhhhHHHHHHHhhhhh
Q 002814 526 ESAVSLLDEMTKEGIRPNVV--TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (877)
Q Consensus 526 ~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~l~~~~ 575 (877)
...+++-.-|..-.+.|... ++..-+..+.+.+++..|..+..+.|+..+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34444444444444555443 444555556666666666665555555443
No 290
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=33.20 E-value=15 Score=26.98 Aligned_cols=8 Identities=25% Similarity=0.077 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 002814 1 MASTPPHC 8 (877)
Q Consensus 1 ~~~~~~~~ 8 (877)
|+||||.|
T Consensus 3 m~pp~~a~ 10 (69)
T 2xk0_A 3 MAPPVAAP 10 (69)
T ss_dssp SSCSSSSS
T ss_pred CCCCCCCC
Confidence 55555433
No 291
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.54 E-value=2.9e+02 Score=25.45 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
+..+.+.|+-.+-+|++.| .|..+.-..++.+....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 3456666666666666666 5555555555555555443
No 292
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=29.67 E-value=11 Score=41.84 Aligned_cols=7 Identities=0% Similarity=-0.277 Sum_probs=2.5
Q ss_pred HHHhhcC
Q 002814 702 DEVKLMD 708 (877)
Q Consensus 702 ~~~~~~~ 708 (877)
.++...+
T Consensus 498 ~~cl~~d 504 (535)
T 2h8h_A 498 CQCWRKE 504 (535)
T ss_dssp HHHTCSS
T ss_pred HHHcCCC
Confidence 3333333
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.19 E-value=1.1e+02 Score=28.91 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=8.2
Q ss_pred HHHHcCCHHHHHHHHHH
Q 002814 343 AICKGAQMDLAFEIMAE 359 (877)
Q Consensus 343 ~~~~~g~~~~A~~~~~~ 359 (877)
..+..|+.+-+..+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555554444444
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.00 E-value=1.6e+02 Score=24.94 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCC
Q 002814 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL--VESAVSLLDEMTKEGI 540 (877)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 540 (877)
..++.-|...|+.++|.+.++++..-.+ ........+..++-+.+. .+....++..+.+.|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3455555556666666666665532111 112233333334443321 2344455555554443
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.97 E-value=1.6e+02 Score=24.93 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHch
Q 002814 338 NTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555566666666666554
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.73 E-value=3e+02 Score=26.18 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=12.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 002814 306 LAVCSRGGLWEAARNLFNEMVH 327 (877)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~m~~ 327 (877)
++.+....++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4455556666666666655543
No 297
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.38 E-value=3.9e+02 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHHCC
Q 002814 383 GRLDDALNMFSEMKFLG 399 (877)
Q Consensus 383 g~~~~A~~~~~~m~~~g 399 (877)
.+.+.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44445555555555544
No 298
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.99 E-value=5.3e+02 Score=27.29 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHH
Q 002814 384 RLDDALNMFSEMKFL--------GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK----DAVTYNALLGGYGK 451 (877)
Q Consensus 384 ~~~~A~~~~~~m~~~--------g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~ 451 (877)
..++...+++..... ++..+......++.. ..|+..+++.+++.+....... ...+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~------- 236 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPEL------- 236 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH-------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHH-------
Confidence 456666777766543 234566666666665 4688888888887765432100 0111111
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 452 QGKYDEVRRMFEQMKADCV---SPNLLTYSTLIDVY---SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (877)
Q Consensus 452 ~g~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (877)
+.++..... ..+....-.++.++ .+.++.+.|+..+.+|.+.|..|....-..++.+...-|.
T Consensus 237 ----------v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 237 ----------LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp ----------HHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred ----------HHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 111111110 00111122233333 3457888999999999988876655555555555554443
No 299
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.89 E-value=6.8e+02 Score=29.41 Aligned_cols=155 Identities=12% Similarity=0.042 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002814 407 YNTVLSIYAKLGR---FEEALLVCKEMESSG----IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (877)
Q Consensus 407 ~~~li~~~~~~g~---~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 479 (877)
-..++...|..|. .++|.+.|+.....+ +.||... .+...-.+.|..++-..++++..... +..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHH
Confidence 3456677788887 457788888776532 4555432 23333446677777677777777642 4555567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHh
Q 002814 480 LIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL-VESAVSLLDEMTK---EGIRPNVVTYNSIIDAFG 555 (877)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~ 555 (877)
++.+++...+.+...++++............... ++.+...+-. .+.|.+.+.+=-+ ..+..+...+..++....
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 8888888888888888877766433211222222 2333333221 3445555443211 112233345667777766
Q ss_pred hcCChhhhHHHH
Q 002814 556 RSATTECTVDDV 567 (877)
Q Consensus 556 ~~g~~~~a~~~~ 567 (877)
..-..++.++.+
T Consensus 843 ~~~~t~~~~~~~ 854 (909)
T 4fke_A 843 RRFSSEFELQQL 854 (909)
T ss_dssp TTCCSHHHHHHH
T ss_pred HhcCCHHHHHHH
Confidence 554444444333
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.74 E-value=30 Score=32.87 Aligned_cols=12 Identities=17% Similarity=-0.180 Sum_probs=4.9
Q ss_pred HHcCChHHHHHH
Q 002814 520 CKNGLVESAVSL 531 (877)
Q Consensus 520 ~~~g~~~~A~~~ 531 (877)
.+.|+.+-+..+
T Consensus 218 ~~~~~~~~v~~L 229 (240)
T 3eu9_A 218 KQRKNVWMINHL 229 (240)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCcHHHHHHH
Confidence 344444433333
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.53 E-value=4.4e+02 Score=25.03 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=56.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHccccCCC----hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002814 162 LLRELGNRGEWSKAIQCFAFAVKREERKND----QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (877)
Q Consensus 162 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 237 (877)
-+..+....+|++|+++.+.....-..... ........+..-.....-.-+..+.+++.. ..........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456677789999999999877643211111 111223334444444444555556555533 3456666777788
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 002814 238 YGRSGYCQEAISVFNSMK 255 (877)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~ 255 (877)
+.+.|+-++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 999999999999986654
No 302
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=25.39 E-value=7.3e+02 Score=27.56 Aligned_cols=373 Identities=11% Similarity=0.014 Sum_probs=196.9
Q ss_pred HHHHHHhhcccCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 002814 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL--AKNIFETA 219 (877)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 219 (877)
-..++..+...+.+.+.-+....+....|+-.+|......+-..+...+ ..+..++..+.+.|.+.. ..+=++.+
T Consensus 88 w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p---~~c~~l~~~~~~~g~lt~~~~~~R~~~a 164 (618)
T 1qsa_A 88 WRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP---NACDKLFSVWRASGKQDPLAYLERIRLA 164 (618)
T ss_dssp HHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC---THHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4455555544444555556678888888998888887777666654333 367788888887776533 44444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCHHH---HHHHHHHHHcCCCCHHHHHHHH
Q 002814 220 LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY---------NLKPNLVT---YNAVIDACGKGGVDFKHVVEIF 287 (877)
Q Consensus 220 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~---~~~ll~~~~~~g~~~~~a~~~~ 287 (877)
...| +...-..|+... . .....-.+.+..+... .+.++... +...+.-+.+. +.+.|..++
T Consensus 165 l~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~--d~~~A~~~~ 237 (618)
T 1qsa_A 165 MKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQ--DAENARLMI 237 (618)
T ss_dssp HHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHH--CHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhc--CHHHHHHHH
Confidence 4443 222222222211 0 0111001111111110 01122221 22223333443 678999999
Q ss_pred HHHHHCCCCCCHHHHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhC
Q 002814 288 DDMLRNGVQPDRITFNSLL----AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (877)
Q Consensus 288 ~~m~~~g~~p~~~t~~~ll----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 363 (877)
....+.+ ..+......+- ......+...++...+....... .+.....-.+....+.|+++.|.+.|+.|...
T Consensus 238 ~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 238 PSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred Hhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 8886543 22333322222 22333443556677777665543 34434444555556789999999999999764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHH
Q 002814 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK---DAV 440 (877)
Q Consensus 364 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~ 440 (877)
... .....--+..++...|+.++|..+|..+... . +|-.++. ..+.|..-.. ......+ ...
T Consensus 315 ~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lA-a~~Lg~~~~~-------~~~~~~~~~~~~~ 379 (618)
T 1qsa_A 315 AKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVA-AQRIGEEYEL-------KIDKAPQNVDSAL 379 (618)
T ss_dssp GGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHH-HHHTTCCCCC-------CCCCCCSCCCCHH
T ss_pred ccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHH-HHHcCCCCCC-------CCCCCChhHHhhh
Confidence 222 3444445667788899999999999998742 1 2333321 1233321000 0000000 111
Q ss_pred H---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 002814 441 T---YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK--ADVVLYSAL 515 (877)
Q Consensus 441 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l 515 (877)
. -..-+..+...|....|...+..+... . +......+.......|..+.++.........+.. .-...|..+
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~ 456 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDL 456 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHH
Confidence 1 112345677889999999999888764 2 4444445555566788888877655443222100 000135666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 002814 516 IDALCKNGLVESAVSLLDEMTKEGIRPNVV 545 (877)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 545 (877)
+..+.+.-.++.++-.---..+.++.|+..
T Consensus 457 i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 457 FKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 777776666666554333345667777654
No 303
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.44 E-value=3.8e+02 Score=27.54 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 002814 196 ASAMISILGRLGKVDLAKNIFETA 219 (877)
Q Consensus 196 ~~~l~~~~~~~g~~~~A~~~~~~~ 219 (877)
...++.-|...|+.++|.+.++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 345555566666666666666555
No 304
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.39 E-value=5.7e+02 Score=25.59 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 002814 243 YCQEAISVFNSMKRYNLKPN--LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARN 320 (877)
Q Consensus 243 ~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 320 (877)
+..+.+++---+....+.|. ..+...-|..+.+.+ ++..|..+-+++++.+..++ ..++|++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~K-Ny~tAa~fArrLLel~p~~~---------------~a~qArk 248 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHK-NFLQASYFAGEFLKIISSGP---------------RAEQARK 248 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSSH---------------HHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCHH---------------HHHHHHH
Confidence 33444555544544444442 345566667778888 89999888888888754322 3355666
Q ss_pred HHHHHHHc
Q 002814 321 LFNEMVHR 328 (877)
Q Consensus 321 ~~~~m~~~ 328 (877)
++....+.
T Consensus 249 il~~ce~~ 256 (325)
T 3mv2_A 249 IKNKADSM 256 (325)
T ss_dssp HHHHHHTS
T ss_pred HHHHHhcC
Confidence 66665544
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.23 E-value=4.3e+02 Score=31.37 Aligned_cols=138 Identities=12% Similarity=-0.013 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002814 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (877)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 234 (877)
.++....++..|...+.++-|.++..|. +.++..--.++.+|..+|++++|...|+++-. |+..+.....
T Consensus 809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~-------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~-- 878 (950)
T 4gq2_M 809 ENDLVTELVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA-- 878 (950)
T ss_dssp SCCHHHHHHHHHHHTTCHHHHHHHGGGC-------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG--
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHhhc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc--
Confidence 3444555777788888888777765443 22333334578889999999999999987642 2221110000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 002814 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI----TFNSLLAVCS 310 (877)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~ 310 (877)
..+....++..... ......-|..++..+-+.+ -++.++++-+.+++.--.-|.. .|..+.++.+
T Consensus 879 --------~~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~-a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~ 947 (950)
T 4gq2_M 879 --------VLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 947 (950)
T ss_dssp --------GGHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred --------chhhhhhccCcccc--cchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHh
Confidence 00111222222111 0112336777888888888 8888888888888642222332 4666666665
Q ss_pred hCC
Q 002814 311 RGG 313 (877)
Q Consensus 311 ~~g 313 (877)
..|
T Consensus 948 a~g 950 (950)
T 4gq2_M 948 AAG 950 (950)
T ss_dssp HHC
T ss_pred hCC
Confidence 543
No 306
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.03 E-value=4.4e+02 Score=23.83 Aligned_cols=122 Identities=10% Similarity=0.009 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002814 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (877)
Q Consensus 368 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 447 (877)
|...-...+.++.+.+..+ +...+.++.. .+|...-...+.++.+.|+.+ +...+..+.+ .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444444444444422 2222222221 234444444455555555432 2233333332 345555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002814 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (877)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (877)
++.+.|.. ++...+..+.+ .+|..+-...+.++.+.+. .++...+..+.+
T Consensus 135 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 135 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 55555543 23334444432 2355555555555555554 334444444444
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.65 E-value=5.6e+02 Score=30.34 Aligned_cols=131 Identities=10% Similarity=0.054 Sum_probs=67.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002814 340 LLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR 419 (877)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 419 (877)
++..+...|.++-|.++..-+.. +...--.+..+|...|++++|..+|++.- .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------
Confidence 44455556666665554444332 33333345666677777777777776542 122111100000
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 002814 420 FEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGG 488 (877)
Q Consensus 420 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g 488 (877)
......++... +.. .....-|..++..+.+.+.++-+.++-+..++.--.-|. ..|+.+..+.+..|
T Consensus 880 ~~~~~~ll~~~-e~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY-HHQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT-TTC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc-ccc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00011111110 000 112346778888888999999998888888765322233 35667777666554
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.00 E-value=3.7e+02 Score=24.71 Aligned_cols=33 Identities=21% Similarity=0.080 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (877)
..+.+.|+-.+-+|++.|-.|..+.-..++.+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344555555555555554433333333333333
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.99 E-value=1.5e+02 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHch
Q 002814 338 NTLLDAICKGAQMDLAFEIMAEMP 361 (877)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~m~ 361 (877)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555555566666666666554
No 310
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.87 E-value=3.8e+02 Score=24.66 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
-.+.+.|+-.+-+|++.|..|..+.-..++-+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355666666666666665444444434343333
No 311
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.74 E-value=5.1e+02 Score=24.05 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=19.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002814 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523 (877)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 523 (877)
..+.+.|+-.+-+|++.|-.|..+.-..++.+...-|
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4555566666666665554444444444444444444
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.56 E-value=4.7e+02 Score=24.28 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=16.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002814 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (877)
Q Consensus 382 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 414 (877)
-.+.+.|+-.+-+|++.|..|..+.-..++-+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345555555555555555444443333333333
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.41 E-value=1.5e+02 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 002814 443 NALLGGYGKQGKYDEVRRMFEQM 465 (877)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m 465 (877)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444445555555554444
Done!