BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002816
(877 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRK--CPGC 863
CS+CLE KE VI +C H FC C+ + E R CP C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 67
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 65
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHR-----KCPGCAASFSPNDVKP 874
C ICLE KE V C H FC C+ ES CP C + ++KP
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC E K+V I C HL C C+ ES + CP C
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCP 861
+C ICL +E V T C H FC C+ K KCP
Sbjct: 8 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 45
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
+C IC++ ++++ C H FC C+ K ++ RHR CP C
Sbjct: 17 ECCICMDGRADLIL-PCAHSFCQKCIDKWSD-RHRNCPIC 54
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRH--RKCPGC 863
C ICLE KE V TKC H+FC C+ K+ + +CP C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCP 861
+C ICL +E V T C H FC C+ K KCP
Sbjct: 27 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 64
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPNDVK 873
C ICL+ ++ V C H FC C+ ++ E+ KCP C S N ++
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 825 CSICLERPKEVVITK-CYHLFCNPCVQKVTESRHRKCPGC 863
C ICL+ K + TK C H FC C+ S +++CP C
Sbjct: 57 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 96
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 36.2 bits (82), Expect = 0.072, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 873
C IC + V T C HLFC C+ + + CP C P D++
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 825 CSICLERPKEVV-------ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877
C IC++ E+V T+C H+FC+ C++ ++ + CP C + P+YI
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPIYI 68
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 825 CSICLERPKEVV-------ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877
C IC++ E+V T+C H+FC+ C++ ++ + CP C + P+YI
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPIYI 133
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 825 CSICLERPKEVV-------ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877
C IC++ E+V T+C H+FC+ C++ ++ + CP C + P+YI
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPIYI 71
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 825 CSICLERPKEVV-------ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877
C IC++ E+V T+C H+FC+ C++ ++ + CP C + P+YI
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHPIYI 64
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 824 KCSICLERPK-EVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 873
+C IC E ++I +C H +C+ C++K S +CP C + + D+K
Sbjct: 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-SYKTQCPTCCVTVTEPDLK 73
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 825 CSICLERPKEVVITK-CYHLFCNPCVQKVTESRHRKCPGC 863
C ICL+ K + TK C H FC C+ S +++CP C
Sbjct: 56 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 95
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 825 CSICLERPKEVVITK-CYHLFCNPCVQKVTESRHRKCPGC 863
C ICL+ K + TK C H FC C+ S +++CP C
Sbjct: 37 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTC 76
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
+C IC+E E V C H C PC Q E CP C
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFC 56
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872
KC + L PK+ T+C H FC C+ + S KC C S + V
Sbjct: 20 KCHLVLCSPKQ---TECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGC 863
C ICL+ ++ V C H FC C+ ++ E+ KCP C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCP 861
+C ICL +E V T C H FC C+ K KCP
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCP 861
+C ICL +E V T C H FC C+ K KCP
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
+C IC + + V+TKC H FC C + R P C
Sbjct: 17 RCFICRQAFQNPVVTKCRHYFCESCALE----HFRATPRC 52
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 865
C +CL+R +V C HL C C + + CP C A
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGL-----QLCPICRA 51
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
C C E + V T+C+H C C+Q+ +++ CP C
Sbjct: 81 CVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPAC 119
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
+C IC E E V C H FC+ C+ + + R +CP C
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPIC 93
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRK---------CPGCAASFSPNDVKP 874
C ICLE + + C H FC C+ + H+K CP C S+ P +++P
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLT----ANHKKSMLDKGESSCPVCRISYQPENIRP 76
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 825 CSICLERPKEVV-------ITKCYHLFCNPCVQKVTESRHRKCPGC 863
C IC++ E+V T+C H+FC+ C++ ++ + CP C
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTC 62
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
+C IC E E V C H FC+ C+ + + R +CP C
Sbjct: 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPIC 93
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863
+C IC E E V C H FC+ C+ + + R +CP C
Sbjct: 66 QCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPIC 104
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 349 CLSSSKAFLS--VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRR 406
CLS LS +K LEK + K++ F K W N+ +++ +
Sbjct: 79 CLSPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQT 138
Query: 407 SSA---VTDSKIADLGIEIQKQ---IDEKNRIEMRLEE 438
S+A VTD K+ L +++ + ID KN + LE+
Sbjct: 139 SNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEK 176
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 825 CSICLERPKEVVITKCYHLFCNPCV-----QKVTESRHR-KCPGCAASFS 868
C ICLE E + C H C C+ + VT + CP C S+S
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64
>pdb|2V0X|A Chain A, The Dimerization Domain Of Lap2alpha
pdb|2V0X|B Chain B, The Dimerization Domain Of Lap2alpha
Length = 235
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 78 YDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIEDVTPHPSHD----AFLSR 133
++S LKVV + W+++ L S + R SS + +R LS+ P D F+S
Sbjct: 36 HESILKVVEEEWQQIDRQLPSVACRYPVSSI-EAARILSV-------PKVDDEILGFISE 87
Query: 134 LMETGATESSSADNCPNQME 153
AT++SS ++C ++
Sbjct: 88 ATPAAATQASSTESCDKHLD 107
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 825 CSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGC 863
C IC++R +V C HL C C + V KCP C
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVD-----KCPMC 61
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 825 CSIC---LERPKEVVITKC---YHLFC-NPCVQKVTESRHRKCPGC 863
C +C E +++ +C YH++C NP + KV E + CP C
Sbjct: 29 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 825 CSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGC 863
C +C+++ VV C HL C C + RKCP C
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPIC 332
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 458 SFPEDMSAMQRQLSKYKEAALDIHILRADV----LSLTNVLERKVKECETLLA 506
S PE +A + L +KE +++IH++ AD+ +S TN+ + +E +L +
Sbjct: 469 SGPEAYAAAYQDLLMFKEGSMNIHLIEADLRNFEISKTNISQSTEQEMASLWS 521
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 458 SFPEDMSAMQRQLSKYKEAALDIHILRADV----LSLTNVLERKVKECETLLA 506
S PE +A + L +KE +++IH++ AD+ +S TN+ + +E +L +
Sbjct: 469 SGPEAYAAAYQDLLMFKEGSMNIHLIEADLRNFEISKTNISQSTEQEMASLWS 521
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 825 CSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAAS 866
C +C+++ +V C HL C C + RKCP C ++
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSL-----RKCPICRST 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,747,649
Number of Sequences: 62578
Number of extensions: 741962
Number of successful extensions: 2160
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2098
Number of HSP's gapped (non-prelim): 102
length of query: 877
length of database: 14,973,337
effective HSP length: 107
effective length of query: 770
effective length of database: 8,277,491
effective search space: 6373668070
effective search space used: 6373668070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)