Query 002816
Match_columns 877
No_of_seqs 514 out of 2815
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 11:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 100.0 2.6E-38 5.6E-43 335.2 75.8 686 155-877 6-698 (698)
2 TIGR00606 rad50 rad50. This fa 99.9 5.5E-18 1.2E-22 207.9 78.7 729 28-823 309-1091(1311)
3 KOG0161 Myosin class II heavy 99.9 7.8E-17 1.7E-21 192.1 82.4 178 574-758 1615-1792(1930)
4 KOG0161 Myosin class II heavy 99.8 6.4E-12 1.4E-16 150.9 87.7 71 359-432 1074-1144(1930)
5 PF01576 Myosin_tail_1: Myosin 99.8 8.3E-22 1.8E-26 227.1 0.0 717 30-801 10-785 (859)
6 COG1196 Smc Chromosome segrega 99.8 2E-12 4.4E-17 157.2 79.1 21 784-804 946-966 (1163)
7 TIGR02169 SMC_prok_A chromosom 99.8 1.5E-12 3.3E-17 163.3 80.1 22 783-804 954-975 (1164)
8 TIGR00606 rad50 rad50. This fa 99.8 7.5E-13 1.6E-17 163.1 69.5 68 41-108 401-468 (1311)
9 TIGR02168 SMC_prok_B chromosom 99.8 2.6E-11 5.7E-16 152.9 83.0 32 68-99 167-198 (1179)
10 KOG4674 Uncharacterized conser 99.8 8.9E-10 1.9E-14 130.2 87.3 62 39-100 533-606 (1822)
11 TIGR02169 SMC_prok_A chromosom 99.8 1.5E-10 3.2E-15 145.5 83.0 29 48-76 173-201 (1164)
12 COG1196 Smc Chromosome segrega 99.8 1E-09 2.2E-14 133.9 85.9 19 844-863 1074-1092(1163)
13 TIGR02168 SMC_prok_B chromosom 99.7 3.8E-10 8.1E-15 142.4 83.0 17 786-802 964-980 (1179)
14 KOG4674 Uncharacterized conser 99.7 1.5E-08 3.2E-13 120.2 84.6 63 38-100 682-744 (1822)
15 PF10174 Cast: RIM-binding pro 99.7 2E-09 4.3E-14 120.5 68.6 135 302-436 123-261 (775)
16 PRK02224 chromosome segregatio 99.7 2.4E-09 5.3E-14 128.9 74.4 14 554-567 475-488 (880)
17 PRK02224 chromosome segregatio 99.7 2.4E-09 5.2E-14 129.0 73.3 38 502-539 408-445 (880)
18 PF10174 Cast: RIM-binding pro 99.7 6E-09 1.3E-13 116.6 68.5 65 501-571 289-353 (775)
19 KOG0933 Structural maintenance 99.6 1.3E-08 2.8E-13 111.6 65.8 133 302-444 338-472 (1174)
20 KOG0996 Structural maintenance 99.6 5.1E-08 1.1E-12 109.0 71.6 36 58-93 266-301 (1293)
21 PRK03918 chromosome segregatio 99.6 7.1E-08 1.5E-12 116.7 75.4 12 860-871 815-826 (880)
22 PF01576 Myosin_tail_1: Myosin 99.6 1.9E-16 4.1E-21 183.1 0.0 51 54-104 6-56 (859)
23 KOG0996 Structural maintenance 99.6 1.3E-07 2.9E-12 105.8 67.7 57 209-265 407-463 (1293)
24 PRK03918 chromosome segregatio 99.6 3.8E-07 8.2E-12 110.5 77.3 22 512-533 458-479 (880)
25 KOG0320 Predicted E3 ubiquitin 99.4 6.4E-14 1.4E-18 120.8 2.9 55 822-877 131-187 (187)
26 KOG0962 DNA repair protein RAD 99.3 7.1E-06 1.5E-10 94.9 74.0 72 28-99 308-379 (1294)
27 PRK01156 chromosome segregatio 99.3 1.5E-05 3.3E-10 96.3 73.4 25 509-533 419-443 (895)
28 PLN03208 E3 ubiquitin-protein 99.3 1.3E-12 2.9E-17 117.2 3.6 58 819-876 15-87 (193)
29 KOG0964 Structural maintenance 99.3 8.3E-06 1.8E-10 89.8 65.4 73 359-434 395-467 (1200)
30 KOG0317 Predicted E3 ubiquitin 99.2 6E-12 1.3E-16 118.3 3.8 54 822-876 239-292 (293)
31 PF15227 zf-C3HC4_4: zinc fing 99.2 6.5E-12 1.4E-16 84.0 2.2 39 825-863 1-42 (42)
32 KOG0823 Predicted E3 ubiquitin 99.2 5.5E-12 1.2E-16 115.1 1.9 56 821-876 46-103 (230)
33 smart00504 Ubox Modified RING 99.2 9.7E-12 2.1E-16 94.4 2.7 53 823-876 2-54 (63)
34 KOG0976 Rho/Rac1-interacting s 99.2 1.8E-05 3.8E-10 84.9 56.5 27 841-867 632-658 (1265)
35 KOG0287 Postreplication repair 99.2 5.1E-12 1.1E-16 119.9 0.4 57 820-877 21-77 (442)
36 COG5432 RAD18 RING-finger-cont 99.1 1.3E-11 2.7E-16 114.5 1.5 58 817-875 20-77 (391)
37 TIGR00599 rad18 DNA repair pro 99.1 2.4E-11 5.3E-16 124.3 3.3 60 816-876 20-79 (397)
38 PF12128 DUF3584: Protein of u 99.1 0.00013 2.8E-09 89.9 72.1 32 202-233 354-385 (1201)
39 PF14835 zf-RING_6: zf-RING of 99.1 2E-11 4.3E-16 86.2 0.6 55 818-875 3-58 (65)
40 PF13923 zf-C3HC4_2: Zinc fing 99.1 5.4E-11 1.2E-15 79.2 1.7 38 825-863 1-39 (39)
41 KOG0933 Structural maintenance 99.1 7.9E-05 1.7E-09 82.8 75.0 65 365-436 438-502 (1174)
42 KOG2164 Predicted E3 ubiquitin 99.0 5.8E-11 1.2E-15 121.2 2.0 56 822-877 186-245 (513)
43 KOG0978 E3 ubiquitin ligase in 99.0 9.2E-05 2E-09 81.1 74.7 67 204-270 59-125 (698)
44 PF04564 U-box: U-box domain; 99.0 8.1E-11 1.8E-15 90.9 1.3 55 822-876 4-58 (73)
45 PF13920 zf-C3HC4_3: Zinc fing 99.0 2E-10 4.2E-15 81.6 2.0 45 823-868 3-48 (50)
46 PRK04863 mukB cell division pr 98.9 0.00052 1.1E-08 84.3 73.4 56 741-796 1063-1118(1486)
47 PHA02926 zinc finger-like prot 98.9 8E-10 1.7E-14 99.8 4.2 59 818-876 166-238 (242)
48 KOG0964 Structural maintenance 98.9 0.00027 5.9E-09 78.4 68.9 47 522-568 673-720 (1200)
49 PF00097 zf-C3HC4: Zinc finger 98.9 6.3E-10 1.4E-14 75.5 1.9 39 825-863 1-41 (41)
50 PF13445 zf-RING_UBOX: RING-ty 98.9 3.6E-10 7.8E-15 75.2 0.7 36 825-861 1-43 (43)
51 PF05701 WEMBL: Weak chloropla 98.9 0.00031 6.7E-09 77.9 58.8 111 589-699 314-424 (522)
52 PF14634 zf-RING_5: zinc-RING 98.9 1.1E-09 2.4E-14 74.9 2.9 41 824-865 1-44 (44)
53 PF00261 Tropomyosin: Tropomyo 98.9 7.3E-06 1.6E-10 80.7 30.7 199 591-789 29-227 (237)
54 KOG0250 DNA repair protein RAD 98.9 0.00045 9.8E-09 78.5 71.5 22 83-104 151-172 (1074)
55 PF13639 zf-RING_2: Ring finge 98.9 3.6E-10 7.8E-15 77.8 0.0 40 824-864 2-44 (44)
56 PF05701 WEMBL: Weak chloropla 98.8 0.00047 1E-08 76.5 59.5 17 418-434 216-232 (522)
57 PRK04778 septation ring format 98.8 0.00056 1.2E-08 77.2 54.5 11 447-457 165-175 (569)
58 PHA02929 N1R/p28-like protein; 98.8 1.5E-09 3.2E-14 103.2 2.8 48 821-869 173-228 (238)
59 KOG4172 Predicted E3 ubiquitin 98.8 4.3E-10 9.3E-15 74.9 -0.7 52 823-876 8-60 (62)
60 COG5574 PEX10 RING-finger-cont 98.8 1.6E-09 3.4E-14 100.8 2.5 51 822-872 215-266 (271)
61 PRK04778 septation ring format 98.8 0.00074 1.6E-08 76.2 52.0 9 807-815 552-560 (569)
62 KOG0250 DNA repair protein RAD 98.8 0.00085 1.8E-08 76.4 65.7 19 843-862 996-1014(1074)
63 COG1579 Zn-ribbon protein, pos 98.8 8E-06 1.7E-10 77.5 25.7 34 824-868 199-232 (239)
64 KOG4643 Uncharacterized coiled 98.8 0.00081 1.7E-08 75.1 47.7 43 636-678 411-453 (1195)
65 cd00162 RING RING-finger (Real 98.7 6.4E-09 1.4E-13 72.9 2.8 44 824-867 1-45 (45)
66 PF00261 Tropomyosin: Tropomyo 98.7 5.3E-05 1.1E-09 74.7 30.3 18 632-649 63-80 (237)
67 KOG0976 Rho/Rac1-interacting s 98.7 0.001 2.2E-08 72.0 60.9 60 209-268 94-153 (1265)
68 PF07888 CALCOCO1: Calcium bin 98.7 0.00093 2E-08 71.5 44.7 48 753-800 411-458 (546)
69 smart00184 RING Ring finger. E 98.7 1.1E-08 2.4E-13 69.1 2.9 39 825-863 1-39 (39)
70 KOG0971 Microtubule-associated 98.7 0.0013 2.8E-08 72.4 46.9 115 506-629 325-441 (1243)
71 PF07888 CALCOCO1: Calcium bin 98.7 0.0012 2.5E-08 70.8 43.6 44 760-803 411-454 (546)
72 KOG0994 Extracellular matrix g 98.6 0.0022 4.7E-08 72.5 55.8 11 782-792 1733-1743(1758)
73 KOG0994 Extracellular matrix g 98.6 0.0023 4.9E-08 72.3 61.4 30 769-798 1713-1742(1758)
74 KOG4643 Uncharacterized coiled 98.6 0.0031 6.6E-08 70.7 57.2 57 201-257 171-227 (1195)
75 KOG0977 Nuclear envelope prote 98.6 0.00043 9.4E-09 74.0 33.8 36 781-822 350-385 (546)
76 PF06160 EzrA: Septation ring 98.5 0.0035 7.6E-08 70.4 50.1 11 363-373 62-72 (560)
77 KOG0311 Predicted E3 ubiquitin 98.5 1.5E-08 3.2E-13 98.2 0.3 55 816-870 37-92 (381)
78 PF05557 MAD: Mitotic checkpoi 98.5 9.5E-07 2.1E-11 102.7 13.0 24 781-804 607-630 (722)
79 COG5152 Uncharacterized conser 98.5 6.2E-08 1.3E-12 84.9 1.7 45 822-867 196-240 (259)
80 KOG0824 Predicted E3 ubiquitin 98.4 9.5E-08 2.1E-12 90.6 2.2 48 823-870 8-55 (324)
81 PF00038 Filament: Intermediat 98.4 0.005 1.1E-07 64.4 40.6 33 363-395 6-38 (312)
82 PF00038 Filament: Intermediat 98.4 0.0057 1.2E-07 63.9 40.4 48 750-797 260-307 (312)
83 KOG0977 Nuclear envelope prote 98.4 0.0072 1.6E-07 65.0 37.1 48 750-797 340-387 (546)
84 PF05483 SCP-1: Synaptonemal c 98.3 0.0075 1.6E-07 64.9 76.9 14 557-570 467-480 (786)
85 COG5243 HRD1 HRD ubiquitin lig 98.2 5.7E-07 1.2E-11 87.4 3.2 46 821-867 286-344 (491)
86 PF05557 MAD: Mitotic checkpoi 98.2 9.5E-06 2.1E-10 94.5 13.5 70 507-576 358-428 (722)
87 PF09726 Macoilin: Transmembra 98.2 0.0034 7.4E-08 71.2 31.7 73 733-805 589-661 (697)
88 TIGR00570 cdk7 CDK-activating 98.2 1.3E-06 2.8E-11 85.8 3.8 38 839-876 25-62 (309)
89 KOG0962 DNA repair protein RAD 98.2 0.037 8E-07 65.4 66.9 68 630-699 1012-1079(1294)
90 PF12678 zf-rbx1: RING-H2 zinc 98.2 8.3E-07 1.8E-11 68.4 1.8 40 824-864 21-73 (73)
91 KOG2879 Predicted E3 ubiquitin 98.2 1E-06 2.2E-11 82.6 2.5 47 822-868 239-287 (298)
92 PRK11637 AmiB activator; Provi 98.1 0.0074 1.6E-07 65.9 31.6 6 822-827 306-311 (428)
93 PF06160 EzrA: Septation ring 98.1 0.037 8.1E-07 62.3 58.8 23 362-384 102-124 (560)
94 COG5540 RING-finger-containing 98.1 1.7E-06 3.6E-11 81.9 2.1 49 821-869 322-373 (374)
95 KOG2177 Predicted E3 ubiquitin 98.1 1.7E-06 3.8E-11 93.9 2.5 47 818-865 9-55 (386)
96 PF15070 GOLGA2L5: Putative go 98.0 0.042 9.1E-07 61.6 41.1 112 635-746 148-259 (617)
97 KOG1813 Predicted E3 ubiquitin 98.0 1.2E-06 2.5E-11 83.3 0.6 45 823-868 242-286 (313)
98 PF14447 Prok-RING_4: Prokaryo 98.0 1.9E-06 4.2E-11 59.2 1.4 48 822-872 7-54 (55)
99 KOG0018 Structural maintenance 98.0 0.051 1.1E-06 62.1 65.6 15 785-799 934-948 (1141)
100 PF14662 CCDC155: Coiled-coil 98.0 0.01 2.2E-07 53.8 27.6 97 680-776 65-161 (193)
101 KOG1785 Tyrosine kinase negati 98.0 2.3E-06 5E-11 84.0 1.8 48 824-871 371-419 (563)
102 KOG4673 Transcription factor T 98.0 0.042 9.1E-07 59.1 60.4 58 745-802 866-926 (961)
103 KOG0802 E3 ubiquitin ligase [P 97.9 3.5E-06 7.7E-11 94.0 1.8 47 822-869 291-342 (543)
104 PHA02562 46 endonuclease subun 97.9 0.013 2.7E-07 67.4 30.8 20 553-572 173-192 (562)
105 PRK04863 mukB cell division pr 97.9 0.15 3.2E-06 63.5 80.9 42 501-542 839-880 (1486)
106 PHA02562 46 endonuclease subun 97.9 0.017 3.8E-07 66.2 31.8 23 549-571 176-198 (562)
107 PF11789 zf-Nse: Zinc-finger o 97.9 3.6E-06 7.8E-11 60.5 1.0 43 821-863 10-54 (57)
108 KOG4159 Predicted E3 ubiquitin 97.8 6.3E-06 1.4E-10 85.2 2.0 49 820-869 82-130 (398)
109 KOG4628 Predicted E3 ubiquitin 97.8 7.1E-06 1.5E-10 82.1 2.2 46 823-868 230-278 (348)
110 PF04641 Rtf2: Rtf2 RING-finge 97.8 7.7E-06 1.7E-10 81.6 2.5 55 819-875 110-168 (260)
111 COG5222 Uncharacterized conser 97.8 8.1E-06 1.7E-10 76.9 2.4 43 823-865 275-318 (427)
112 KOG4265 Predicted E3 ubiquitin 97.8 6.9E-06 1.5E-10 81.1 2.0 47 822-869 290-337 (349)
113 KOG2817 Predicted E3 ubiquitin 97.8 8.9E-06 1.9E-10 81.4 2.3 60 818-877 330-394 (394)
114 PF09726 Macoilin: Transmembra 97.8 0.043 9.4E-07 62.5 31.6 33 508-540 420-452 (697)
115 KOG2660 Locus-specific chromos 97.8 9.3E-06 2E-10 79.0 2.3 53 818-871 11-64 (331)
116 PF12861 zf-Apc11: Anaphase-pr 97.8 1.8E-05 4E-10 60.8 2.8 48 822-869 21-83 (85)
117 KOG4275 Predicted E3 ubiquitin 97.7 1.8E-06 4E-11 81.2 -3.6 40 823-867 301-341 (350)
118 PF05667 DUF812: Protein of un 97.7 0.13 2.9E-06 57.4 34.4 49 658-706 488-536 (594)
119 KOG0825 PHD Zn-finger protein 97.7 6.9E-06 1.5E-10 87.9 -0.0 52 824-876 125-179 (1134)
120 KOG1003 Actin filament-coating 97.7 0.034 7.4E-07 50.2 27.4 38 687-724 93-130 (205)
121 PF14662 CCDC155: Coiled-coil 97.7 0.039 8.4E-07 50.2 27.8 10 662-671 68-77 (193)
122 KOG0018 Structural maintenance 97.7 0.19 4.1E-06 57.8 64.6 62 624-685 688-749 (1141)
123 KOG3039 Uncharacterized conser 97.7 2.1E-05 4.6E-10 72.2 2.2 54 821-875 220-277 (303)
124 KOG4673 Transcription factor T 97.6 0.14 3E-06 55.3 63.9 28 152-179 403-430 (961)
125 KOG1002 Nucleotide excision re 97.6 2.6E-05 5.6E-10 79.8 2.6 51 821-871 535-589 (791)
126 COG1340 Uncharacterized archae 97.6 0.077 1.7E-06 52.2 34.1 34 593-626 50-83 (294)
127 COG1579 Zn-ribbon protein, pos 97.6 0.048 1.1E-06 52.4 23.5 11 820-830 219-229 (239)
128 KOG0946 ER-Golgi vesicle-tethe 97.5 0.14 3E-06 56.8 28.8 23 778-800 916-938 (970)
129 PF12718 Tropomyosin_1: Tropom 97.5 0.034 7.5E-07 49.4 20.6 21 779-799 114-134 (143)
130 KOG0612 Rho-associated, coiled 97.5 0.32 6.8E-06 56.9 44.8 12 843-854 916-927 (1317)
131 COG4372 Uncharacterized protei 97.5 0.12 2.6E-06 51.8 32.7 54 722-775 215-268 (499)
132 KOG0946 ER-Golgi vesicle-tethe 97.5 0.16 3.4E-06 56.3 28.9 23 66-88 65-87 (970)
133 PF05622 HOOK: HOOK protein; 97.5 2.4E-05 5.1E-10 91.0 0.0 17 835-851 657-673 (713)
134 PF09730 BicD: Microtubule-ass 97.5 0.32 6.9E-06 55.1 66.1 37 306-342 82-118 (717)
135 KOG0297 TNF receptor-associate 97.5 5E-05 1.1E-09 80.4 2.0 52 819-871 18-70 (391)
136 KOG0995 Centromere-associated 97.4 0.26 5.6E-06 52.8 41.5 32 360-391 293-324 (581)
137 COG4942 Membrane-bound metallo 97.4 0.22 4.8E-06 52.0 30.9 22 745-766 217-238 (420)
138 KOG0995 Centromere-associated 97.4 0.28 6E-06 52.6 45.8 66 505-573 293-358 (581)
139 COG5220 TFB3 Cdk activating ki 97.4 4.9E-05 1.1E-09 69.4 0.7 48 823-870 11-66 (314)
140 KOG0826 Predicted E3 ubiquitin 97.4 3E-05 6.6E-10 74.9 -0.6 54 822-876 300-354 (357)
141 KOG1039 Predicted E3 ubiquitin 97.3 0.00012 2.7E-09 74.1 2.9 49 821-869 160-222 (344)
142 KOG0828 Predicted E3 ubiquitin 97.3 0.00014 3E-09 74.2 3.0 50 820-869 569-635 (636)
143 PF14915 CCDC144C: CCDC144C pr 97.3 0.19 4.1E-06 49.1 36.4 21 779-799 277-297 (305)
144 KOG0804 Cytoplasmic Zn-finger 97.3 7.4E-05 1.6E-09 75.5 0.8 47 819-868 172-222 (493)
145 PF05290 Baculo_IE-1: Baculovi 97.3 0.00094 2E-08 55.6 6.7 51 821-871 79-135 (140)
146 KOG1029 Endocytic adaptor prot 97.2 0.52 1.1E-05 52.0 35.2 35 632-666 471-505 (1118)
147 KOG1029 Endocytic adaptor prot 97.2 0.53 1.1E-05 51.9 34.0 54 613-666 445-498 (1118)
148 KOG4692 Predicted E3 ubiquitin 97.1 0.00021 4.5E-09 69.5 1.9 46 822-868 422-467 (489)
149 PF14570 zf-RING_4: RING/Ubox 97.1 0.00036 7.8E-09 47.3 2.4 43 825-867 1-47 (48)
150 PF15070 GOLGA2L5: Putative go 97.1 0.77 1.7E-05 51.8 52.9 22 412-433 121-142 (617)
151 KOG4593 Mitotic checkpoint pro 97.1 0.67 1.4E-05 51.0 63.9 21 781-801 560-580 (716)
152 KOG1571 Predicted E3 ubiquitin 97.1 0.00016 3.4E-09 71.8 0.3 44 821-868 304-347 (355)
153 KOG1814 Predicted E3 ubiquitin 96.9 0.00079 1.7E-08 67.7 4.0 45 821-865 183-237 (445)
154 PF15619 Lebercilin: Ciliary p 96.9 0.4 8.6E-06 45.2 25.5 38 659-696 66-103 (194)
155 KOG4593 Mitotic checkpoint pro 96.8 1.1 2.3E-05 49.5 66.1 23 781-803 601-623 (716)
156 PF09728 Taxilin: Myosin-like 96.8 0.73 1.6E-05 47.3 39.9 58 643-700 205-262 (309)
157 KOG0963 Transcription factor/C 96.8 1.1 2.3E-05 48.8 42.7 67 588-654 193-263 (629)
158 COG5109 Uncharacterized conser 96.8 0.00059 1.3E-08 65.5 1.6 59 819-877 333-396 (396)
159 KOG1734 Predicted RING-contain 96.7 0.00036 7.9E-09 65.4 -0.0 50 823-872 225-285 (328)
160 PF14915 CCDC144C: CCDC144C pr 96.6 0.77 1.7E-05 45.1 37.6 38 661-698 207-244 (305)
161 KOG3161 Predicted E3 ubiquitin 96.6 0.00074 1.6E-08 71.4 1.0 37 822-861 11-51 (861)
162 PF09789 DUF2353: Uncharacteri 96.6 1 2.2E-05 45.6 24.9 37 754-790 191-227 (319)
163 KOG1001 Helicase-like transcri 96.6 0.0009 2E-08 75.3 1.5 48 823-871 455-503 (674)
164 COG0419 SbcC ATPase involved i 96.5 3.1 6.8E-05 50.6 75.4 8 837-844 815-822 (908)
165 TIGR03185 DNA_S_dndD DNA sulfu 96.5 2.4 5.3E-05 49.3 34.6 9 863-871 580-588 (650)
166 PF15619 Lebercilin: Ciliary p 96.5 0.75 1.6E-05 43.4 26.5 14 783-796 174-187 (194)
167 COG3883 Uncharacterized protei 96.5 0.97 2.1E-05 44.2 25.6 21 620-640 67-87 (265)
168 COG5194 APC11 Component of SCF 96.4 0.0027 5.8E-08 47.2 2.8 32 839-871 53-84 (88)
169 KOG0980 Actin-binding protein 96.4 2.4 5.3E-05 48.0 33.7 15 808-822 597-611 (980)
170 COG5175 MOT2 Transcriptional r 96.4 0.0017 3.8E-08 62.9 2.2 52 824-875 16-71 (480)
171 PF10146 zf-C4H2: Zinc finger- 96.3 0.47 1E-05 45.9 18.0 27 844-871 196-222 (230)
172 PF13514 AAA_27: AAA domain 96.3 4.8 0.0001 50.3 73.8 35 507-541 460-494 (1111)
173 KOG1493 Anaphase-promoting com 96.3 0.0023 4.9E-08 47.1 1.8 46 824-869 22-82 (84)
174 PF08647 BRE1: BRE1 E3 ubiquit 96.2 0.18 3.8E-06 41.4 12.8 80 632-711 2-81 (96)
175 PF10473 CENP-F_leu_zip: Leuci 96.2 0.79 1.7E-05 40.2 21.2 38 729-766 71-108 (140)
176 KOG1941 Acetylcholine receptor 96.2 0.0022 4.7E-08 63.7 1.5 45 823-867 366-415 (518)
177 KOG3800 Predicted E3 ubiquitin 96.2 0.0029 6.2E-08 60.8 2.2 35 839-873 22-56 (300)
178 COG3883 Uncharacterized protei 96.1 1.5 3.3E-05 42.9 28.3 12 628-639 82-93 (265)
179 KOG0979 Structural maintenance 96.1 3.9 8.5E-05 47.3 60.8 42 221-262 181-222 (1072)
180 KOG3002 Zn finger protein [Gen 96.0 0.0032 6.9E-08 63.1 2.0 44 820-868 46-91 (299)
181 KOG2114 Vacuolar assembly/sort 96.0 0.015 3.2E-07 64.6 7.1 79 770-866 802-881 (933)
182 KOG0963 Transcription factor/C 95.9 3.4 7.3E-05 45.2 43.9 33 591-623 310-342 (629)
183 KOG2034 Vacuolar sorting prote 95.9 0.013 2.9E-07 65.5 5.9 33 823-855 818-852 (911)
184 PF09730 BicD: Microtubule-ass 95.8 4.7 0.0001 46.1 65.5 26 413-438 156-181 (717)
185 KOG4362 Transcriptional regula 95.8 0.003 6.5E-08 69.2 0.6 54 815-868 14-69 (684)
186 PF09728 Taxilin: Myosin-like 95.7 2.9 6.4E-05 43.0 40.2 88 713-800 212-299 (309)
187 KOG3970 Predicted E3 ubiquitin 95.7 0.01 2.2E-07 54.1 3.6 55 813-867 38-104 (299)
188 KOG1100 Predicted E3 ubiquitin 95.6 0.0081 1.8E-07 57.0 2.8 40 824-868 160-200 (207)
189 COG5219 Uncharacterized conser 95.6 0.0053 1.1E-07 68.2 1.5 48 821-868 1468-1523(1525)
190 KOG3579 Predicted E3 ubiquitin 95.6 0.0047 1E-07 58.6 0.9 34 822-855 268-305 (352)
191 KOG3113 Uncharacterized conser 95.4 0.009 1.9E-07 55.8 2.1 53 820-875 109-165 (293)
192 PF09789 DUF2353: Uncharacteri 95.3 3.7 8.1E-05 41.7 29.3 37 698-734 191-227 (319)
193 PF13514 AAA_27: AAA domain 95.2 12 0.00026 46.9 81.8 28 245-272 356-383 (1111)
194 KOG0298 DEAD box-containing he 95.2 0.1 2.2E-06 61.2 9.9 54 814-868 1145-1199(1394)
195 PF06008 Laminin_I: Laminin Do 95.1 4.4 9.6E-05 40.9 29.6 14 591-604 127-140 (264)
196 KOG2932 E3 ubiquitin ligase in 95.0 0.0086 1.9E-07 57.6 0.9 41 824-867 92-133 (389)
197 smart00744 RINGv The RING-vari 95.0 0.025 5.4E-07 39.5 2.9 41 824-864 1-49 (49)
198 PF02891 zf-MIZ: MIZ/SP-RING z 95.0 0.011 2.4E-07 41.4 1.1 44 823-866 3-50 (50)
199 PF10367 Vps39_2: Vacuolar sor 95.0 0.071 1.5E-06 45.5 6.4 29 822-850 78-108 (109)
200 COG5236 Uncharacterized conser 94.9 0.016 3.5E-07 56.6 2.4 45 823-867 62-107 (493)
201 KOG0827 Predicted E3 ubiquitin 94.9 0.016 3.4E-07 57.9 2.4 37 837-873 23-61 (465)
202 KOG4360 Uncharacterized coiled 94.9 6.3 0.00014 41.9 24.9 68 30-97 54-121 (596)
203 PF07111 HCR: Alpha helical co 94.9 8.1 0.00018 43.1 73.6 20 784-803 636-655 (739)
204 KOG4185 Predicted E3 ubiquitin 94.8 0.011 2.5E-07 61.1 1.3 35 833-867 20-54 (296)
205 KOG4445 Uncharacterized conser 94.8 0.037 8.1E-07 53.2 4.5 83 788-870 76-188 (368)
206 PF04849 HAP1_N: HAP1 N-termin 94.7 5.3 0.00012 40.2 28.6 10 783-792 293-302 (306)
207 PRK11281 hypothetical protein; 94.7 15 0.00031 45.1 43.3 46 648-693 286-331 (1113)
208 PHA03096 p28-like protein; Pro 94.6 0.018 3.9E-07 57.4 2.1 43 823-865 179-231 (284)
209 KOG2930 SCF ubiquitin ligase, 94.6 0.026 5.6E-07 44.6 2.3 29 839-868 80-108 (114)
210 PF05911 DUF869: Plant protein 94.4 13 0.00028 43.3 62.6 14 413-426 190-203 (769)
211 PF11793 FANCL_C: FANCL C-term 94.4 0.0078 1.7E-07 45.9 -0.9 47 822-868 2-66 (70)
212 PF08317 Spc7: Spc7 kinetochor 94.4 7.7 0.00017 40.6 30.8 16 806-821 275-290 (325)
213 KOG0971 Microtubule-associated 94.2 13 0.00028 42.6 74.6 212 43-277 229-445 (1243)
214 PF10481 CENP-F_N: Cenp-F N-te 94.2 4.7 0.0001 39.0 16.6 20 781-800 110-129 (307)
215 KOG1937 Uncharacterized conser 94.2 8.5 0.00018 40.2 30.8 51 27-81 220-270 (521)
216 PRK11281 hypothetical protein; 94.1 19 0.00041 44.1 35.5 19 552-570 126-144 (1113)
217 PF06906 DUF1272: Protein of u 94.1 0.065 1.4E-06 37.3 3.2 48 822-872 5-56 (57)
218 TIGR01005 eps_transp_fam exopo 94.0 7.7 0.00017 46.3 22.7 24 775-798 378-401 (754)
219 PF05010 TACC: Transforming ac 93.6 6.9 0.00015 37.2 30.7 26 600-625 25-50 (207)
220 TIGR03007 pepcterm_ChnLen poly 93.4 16 0.00036 41.1 24.1 25 774-798 356-380 (498)
221 COG4477 EzrA Negative regulato 93.4 13 0.00029 40.0 53.0 49 662-710 362-410 (570)
222 PF05883 Baculo_RING: Baculovi 93.3 0.048 1E-06 46.5 1.8 35 820-854 24-67 (134)
223 KOG3039 Uncharacterized conser 93.3 0.041 8.9E-07 51.3 1.5 32 823-854 44-75 (303)
224 PF10481 CENP-F_N: Cenp-F N-te 93.2 8.7 0.00019 37.2 19.1 13 781-793 177-189 (307)
225 COG3813 Uncharacterized protei 93.2 0.089 1.9E-06 38.4 2.7 50 822-874 5-58 (84)
226 TIGR01843 type_I_hlyD type I s 93.2 16 0.00035 40.2 24.2 10 557-566 84-93 (423)
227 PF10272 Tmpp129: Putative tra 93.0 0.065 1.4E-06 55.0 2.6 35 840-874 311-357 (358)
228 PF08317 Spc7: Spc7 kinetochor 92.9 14 0.0003 38.7 29.4 19 786-804 275-293 (325)
229 PF12325 TMF_TATA_bd: TATA ele 92.9 5.5 0.00012 34.1 15.2 30 640-669 75-104 (120)
230 COG5185 HEC1 Protein involved 92.6 15 0.00033 38.6 37.9 23 549-571 370-392 (622)
231 PF10498 IFT57: Intra-flagella 92.6 6.9 0.00015 41.1 16.7 60 761-820 282-341 (359)
232 TIGR01843 type_I_hlyD type I s 92.6 19 0.00041 39.5 25.2 23 596-618 79-101 (423)
233 KOG1645 RING-finger-containing 92.5 0.029 6.2E-07 56.7 -0.6 43 834-876 21-64 (463)
234 KOG4185 Predicted E3 ubiquitin 92.5 0.29 6.3E-06 50.6 6.7 44 823-866 208-265 (296)
235 PRK10929 putative mechanosensi 92.4 33 0.00072 42.0 44.3 47 647-693 265-311 (1109)
236 PF04111 APG6: Autophagy prote 91.8 5.2 0.00011 41.4 14.7 30 775-804 108-137 (314)
237 PF13870 DUF4201: Domain of un 91.8 11 0.00024 35.3 22.7 24 644-667 46-69 (177)
238 PF14569 zf-UDP: Zinc-binding 91.7 0.15 3.3E-06 38.3 2.5 47 823-869 10-63 (80)
239 TIGR03185 DNA_S_dndD DNA sulfu 91.6 32 0.0007 40.2 42.6 29 413-441 262-290 (650)
240 KOG0979 Structural maintenance 91.6 33 0.00072 40.3 57.1 23 513-535 636-658 (1072)
241 PF07191 zinc-ribbons_6: zinc- 91.6 0.018 3.8E-07 42.7 -2.4 39 823-867 2-40 (70)
242 COG4026 Uncharacterized protei 91.4 3.3 7.1E-05 38.5 11.0 71 732-802 136-206 (290)
243 PF03854 zf-P11: P-11 zinc fin 91.3 0.063 1.4E-06 35.8 0.1 44 823-869 3-47 (50)
244 PF13870 DUF4201: Domain of un 90.7 15 0.00032 34.5 23.4 19 781-799 153-171 (177)
245 PF04111 APG6: Autophagy prote 90.7 6.4 0.00014 40.7 14.0 12 839-850 247-258 (314)
246 PF05911 DUF869: Plant protein 90.6 40 0.00087 39.4 61.9 48 297-344 262-309 (769)
247 COG5185 HEC1 Protein involved 90.6 25 0.00055 37.1 38.6 18 552-569 335-352 (622)
248 COG4477 EzrA Negative regulato 90.5 29 0.00062 37.6 52.4 10 427-436 171-180 (570)
249 TIGR01562 FdhE formate dehydro 90.5 0.068 1.5E-06 53.9 -0.4 44 822-866 184-233 (305)
250 PF07975 C1_4: TFIIH C1-like d 90.5 0.2 4.3E-06 34.9 2.0 39 825-864 2-50 (51)
251 KOG0827 Predicted E3 ubiquitin 90.4 1.8 4E-05 43.9 9.3 46 824-870 198-247 (465)
252 PF10571 UPF0547: Uncharacteri 90.4 0.12 2.5E-06 30.3 0.6 11 858-868 15-25 (26)
253 smart00787 Spc7 Spc7 kinetocho 90.4 24 0.00052 36.4 30.7 13 807-819 271-283 (312)
254 PF05605 zf-Di19: Drought indu 90.2 0.22 4.8E-06 35.8 2.1 41 822-869 2-43 (54)
255 KOG1899 LAR transmembrane tyro 89.9 35 0.00075 37.5 20.3 96 588-690 108-203 (861)
256 PF07111 HCR: Alpha helical co 89.9 39 0.00084 38.1 75.4 23 549-571 473-495 (739)
257 PF10235 Cript: Microtubule-as 89.7 0.12 2.6E-06 40.8 0.4 35 823-867 45-79 (90)
258 KOG0249 LAR-interacting protei 89.5 33 0.00072 38.4 18.3 29 772-800 229-257 (916)
259 smart00787 Spc7 Spc7 kinetocho 89.0 30 0.00065 35.7 28.9 17 787-803 271-287 (312)
260 KOG1815 Predicted E3 ubiquitin 88.9 0.32 7E-06 53.2 3.2 38 819-856 67-105 (444)
261 KOG0825 PHD Zn-finger protein 88.8 0.17 3.8E-06 55.6 1.0 46 823-868 97-154 (1134)
262 PF06785 UPF0242: Uncharacteri 88.7 28 0.00061 34.9 18.9 23 677-699 150-172 (401)
263 KOG2462 C2H2-type Zn-finger pr 88.6 0.17 3.6E-06 48.9 0.7 49 821-869 160-227 (279)
264 PRK03564 formate dehydrogenase 88.6 0.12 2.5E-06 52.2 -0.4 44 822-866 187-235 (309)
265 PF05384 DegS: Sensor protein 88.6 19 0.00041 32.7 22.1 69 655-723 78-146 (159)
266 PF04216 FdhE: Protein involve 88.5 0.084 1.8E-06 54.1 -1.5 44 823-867 173-221 (290)
267 PF15066 CAGE1: Cancer-associa 88.5 37 0.0008 36.0 29.9 7 598-604 345-351 (527)
268 KOG0999 Microtubule-associated 88.4 41 0.00089 36.4 64.4 19 321-339 170-188 (772)
269 PF00769 ERM: Ezrin/radixin/mo 88.3 28 0.00062 34.5 18.0 14 785-798 187-200 (246)
270 KOG3899 Uncharacterized conser 88.2 0.21 4.6E-06 47.9 1.0 36 840-875 325-372 (381)
271 KOG3268 Predicted E3 ubiquitin 88.0 0.38 8.2E-06 42.5 2.4 33 838-870 188-230 (234)
272 KOG0972 Huntingtin interacting 87.9 29 0.00062 34.1 14.9 80 743-822 271-350 (384)
273 COG4647 AcxC Acetone carboxyla 87.8 0.18 4E-06 41.6 0.3 22 826-847 61-82 (165)
274 PF10498 IFT57: Intra-flagella 87.7 40 0.00087 35.5 18.7 53 718-770 267-319 (359)
275 PF09755 DUF2046: Uncharacteri 87.7 34 0.00073 34.6 35.1 22 516-537 181-202 (310)
276 KOG1940 Zn-finger protein [Gen 87.3 0.37 7.9E-06 47.5 2.1 43 822-865 158-204 (276)
277 cd00065 FYVE FYVE domain; Zinc 87.1 0.15 3.3E-06 37.2 -0.5 32 823-854 3-38 (57)
278 PF00769 ERM: Ezrin/radixin/mo 87.1 34 0.00073 34.0 17.8 40 588-627 9-48 (246)
279 KOG2991 Splicing regulator [RN 87.0 30 0.00064 33.3 21.0 24 505-528 235-258 (330)
280 KOG1428 Inhibitor of type V ad 87.0 0.33 7.2E-06 57.0 1.9 47 823-869 3487-3545(3738)
281 KOG1812 Predicted E3 ubiquitin 86.8 0.33 7.2E-06 51.5 1.6 48 822-869 146-204 (384)
282 PF13851 GAS: Growth-arrest sp 86.6 31 0.00067 33.0 27.4 34 655-688 94-127 (201)
283 KOG2068 MOT2 transcription fac 86.3 0.55 1.2E-05 46.9 2.8 48 823-871 250-301 (327)
284 PRK04023 DNA polymerase II lar 86.3 0.38 8.3E-06 55.3 1.9 46 823-871 627-677 (1121)
285 KOG4718 Non-SMC (structural ma 85.9 1.6 3.5E-05 40.3 5.2 63 806-869 163-228 (235)
286 PF13240 zinc_ribbon_2: zinc-r 85.9 0.13 2.8E-06 29.1 -1.0 22 845-867 2-23 (23)
287 KOG2991 Splicing regulator [RN 85.7 35 0.00076 32.8 22.5 12 549-560 110-121 (330)
288 PF02318 FYVE_2: FYVE-type zin 85.7 0.53 1.1E-05 40.6 2.0 43 822-864 54-101 (118)
289 KOG1899 LAR transmembrane tyro 85.6 62 0.0014 35.7 22.0 9 860-868 390-398 (861)
290 cd00350 rubredoxin_like Rubred 85.5 0.62 1.3E-05 29.3 1.8 11 856-866 16-26 (33)
291 PF01363 FYVE: FYVE zinc finge 85.4 0.036 7.8E-07 42.5 -4.7 33 822-854 9-45 (69)
292 PF09755 DUF2046: Uncharacteri 85.3 45 0.00097 33.7 36.9 19 450-468 23-41 (310)
293 PF06818 Fez1: Fez1; InterPro 85.2 34 0.00074 32.2 22.8 47 593-639 12-58 (202)
294 PF08746 zf-RING-like: RING-li 85.1 0.76 1.7E-05 31.0 2.2 39 825-863 1-43 (43)
295 PF15616 TerY-C: TerY-C metal 84.8 0.38 8.2E-06 41.4 0.7 43 819-868 74-116 (131)
296 COG4026 Uncharacterized protei 84.6 13 0.00028 34.7 10.3 64 712-775 144-207 (290)
297 PF09986 DUF2225: Uncharacteri 84.2 0.3 6.4E-06 47.2 -0.2 54 820-874 3-65 (214)
298 KOG2979 Protein involved in DN 84.2 27 0.00059 33.9 12.6 46 821-866 175-222 (262)
299 KOG0993 Rab5 GTPase effector R 83.7 58 0.0013 33.8 37.0 68 780-855 434-507 (542)
300 PF10267 Tmemb_cc2: Predicted 83.6 6.6 0.00014 41.5 9.3 12 847-858 363-374 (395)
301 PF04710 Pellino: Pellino; In 83.6 0.34 7.5E-06 49.4 0.0 48 822-869 328-402 (416)
302 PF12660 zf-TFIIIC: Putative z 83.4 0.096 2.1E-06 43.1 -3.3 46 824-869 16-67 (99)
303 KOG1952 Transcription factor N 83.1 0.77 1.7E-05 51.6 2.4 46 822-867 191-246 (950)
304 KOG1729 FYVE finger containing 82.6 0.29 6.4E-06 48.8 -0.9 45 823-867 169-224 (288)
305 PRK10884 SH3 domain-containing 82.2 31 0.00066 33.1 12.4 17 593-609 95-111 (206)
306 PF13248 zf-ribbon_3: zinc-rib 82.2 0.28 6.1E-06 28.8 -0.7 23 844-867 4-26 (26)
307 KOG3799 Rab3 effector RIM1 and 81.9 4.4 9.4E-05 34.2 5.7 18 822-843 65-83 (169)
308 PF14353 CpXC: CpXC protein 81.4 0.76 1.7E-05 40.4 1.4 47 823-869 2-50 (128)
309 KOG0249 LAR-interacting protei 81.3 1E+02 0.0022 34.9 19.8 45 721-765 213-257 (916)
310 KOG4302 Microtubule-associated 80.9 1.1E+02 0.0024 35.0 29.7 41 720-760 229-269 (660)
311 PF08882 Acetone_carb_G: Aceto 80.7 0.26 5.5E-06 40.2 -1.7 16 858-873 75-90 (112)
312 KOG0982 Centrosomal protein Nu 80.5 80 0.0017 33.2 25.0 219 595-815 219-439 (502)
313 KOG1937 Uncharacterized conser 80.5 83 0.0018 33.3 35.5 43 659-701 387-429 (521)
314 PF10083 DUF2321: Uncharacteri 79.8 1.4 3E-05 38.7 2.3 29 840-872 26-54 (158)
315 COG3058 FdhE Uncharacterized p 79.7 0.84 1.8E-05 44.1 1.1 45 821-866 184-234 (308)
316 PF11559 ADIP: Afadin- and alp 79.3 49 0.0011 30.0 18.9 16 781-796 134-149 (151)
317 PHA02768 hypothetical protein; 79.2 1.1 2.4E-05 31.8 1.2 38 823-869 6-43 (55)
318 PRK14714 DNA polymerase II lar 79.1 0.75 1.6E-05 54.6 0.7 48 823-870 668-722 (1337)
319 KOG2196 Nuclear porin [Nuclear 79.0 64 0.0014 31.1 19.5 11 793-803 222-232 (254)
320 PRK15422 septal ring assembly 78.8 28 0.0006 26.8 11.1 21 592-612 12-32 (79)
321 COG3074 Uncharacterized protei 78.8 24 0.00052 26.1 10.6 15 598-612 18-32 (79)
322 KOG3362 Predicted BBOX Zn-fing 78.7 0.59 1.3E-05 39.9 -0.2 31 824-855 120-151 (156)
323 PF12795 MscS_porin: Mechanose 78.3 75 0.0016 31.6 24.6 21 600-620 40-60 (240)
324 cd00729 rubredoxin_SM Rubredox 78.3 1.5 3.3E-05 27.8 1.6 10 857-866 18-27 (34)
325 PF09738 DUF2051: Double stran 78.0 68 0.0015 32.8 13.9 44 654-697 84-127 (302)
326 PF07106 TBPIP: Tat binding pr 77.7 19 0.00042 33.4 9.5 41 778-818 114-156 (169)
327 KOG0999 Microtubule-associated 77.7 1.1E+02 0.0024 33.3 65.5 38 358-395 153-190 (772)
328 KOG2113 Predicted RNA binding 77.0 1.2 2.6E-05 43.7 1.2 47 817-866 338-385 (394)
329 PF13094 CENP-Q: CENP-Q, a CEN 76.9 18 0.00039 33.2 8.9 74 27-100 9-82 (160)
330 PF09738 DUF2051: Double stran 76.6 85 0.0018 32.1 14.2 21 778-798 224-244 (302)
331 PF06785 UPF0242: Uncharacteri 76.6 90 0.002 31.6 20.6 75 634-708 93-167 (401)
332 PF14319 Zn_Tnp_IS91: Transpos 76.5 1 2.2E-05 38.1 0.6 10 839-848 57-66 (111)
333 PF06818 Fez1: Fez1; InterPro 76.5 70 0.0015 30.2 22.7 47 593-639 33-79 (202)
334 PF13166 AAA_13: AAA domain 76.2 1.7E+02 0.0038 34.7 27.8 10 790-799 462-471 (712)
335 KOG3842 Adaptor protein Pellin 76.2 2 4.4E-05 42.0 2.5 34 837-870 375-416 (429)
336 PLN02189 cellulose synthase 76.1 1.4 3E-05 51.8 1.7 45 824-868 36-87 (1040)
337 COG4306 Uncharacterized protei 75.6 1.8 3.9E-05 35.8 1.7 28 840-871 26-53 (160)
338 COG1382 GimC Prefoldin, chaper 75.2 51 0.0011 28.1 12.8 38 762-799 73-110 (119)
339 KOG1842 FYVE finger-containing 75.0 4.1 9E-05 42.4 4.4 73 781-853 133-215 (505)
340 KOG1850 Myosin-like coiled-coi 74.6 99 0.0021 31.1 40.4 325 500-840 19-346 (391)
341 PF09787 Golgin_A5: Golgin sub 74.3 1.6E+02 0.0034 33.3 35.1 30 768-797 401-430 (511)
342 PHA02825 LAP/PHD finger-like p 74.3 2.9 6.3E-05 37.0 2.8 47 822-869 8-60 (162)
343 PLN02436 cellulose synthase A 74.0 1.7 3.6E-05 51.2 1.7 45 824-868 38-89 (1094)
344 PRK10929 putative mechanosensi 73.8 2.4E+02 0.0051 35.0 46.0 13 807-819 443-455 (1109)
345 KOG4739 Uncharacterized protei 73.7 1 2.3E-05 42.9 -0.0 23 832-854 15-37 (233)
346 smart00064 FYVE Protein presen 73.6 1.4 3.1E-05 33.5 0.7 32 823-854 11-46 (68)
347 KOG1812 Predicted E3 ubiquitin 73.6 1.4 3E-05 46.9 0.8 32 823-854 307-343 (384)
348 PLN02939 transferase, transfer 72.8 2.2E+02 0.0049 34.4 24.8 36 459-494 238-273 (977)
349 KOG4218 Nuclear hormone recept 72.8 1.7 3.6E-05 43.2 1.0 11 824-834 17-27 (475)
350 PRK00846 hypothetical protein; 72.7 43 0.00093 26.0 8.5 53 752-804 13-65 (77)
351 PF09538 FYDLN_acid: Protein o 71.6 1.6 3.4E-05 36.5 0.5 14 857-870 26-39 (108)
352 COG4357 Zinc finger domain con 71.6 1.9 4.1E-05 34.0 0.9 26 844-869 64-92 (105)
353 PF06156 DUF972: Protein of un 71.2 61 0.0013 27.2 9.9 21 780-800 36-56 (107)
354 PF12773 DZR: Double zinc ribb 71.1 3.3 7.2E-05 29.1 2.0 41 825-871 1-43 (50)
355 PLN02195 cellulose synthase A 71.1 2.7 5.8E-05 49.2 2.4 46 823-868 7-59 (977)
356 PLN02638 cellulose synthase A 71.0 2.2 4.8E-05 50.4 1.7 45 824-868 19-70 (1079)
357 PRK10246 exonuclease subunit S 70.9 2.8E+02 0.0061 34.7 77.3 12 860-871 978-989 (1047)
358 PTZ00303 phosphatidylinositol 70.2 2.1 4.6E-05 47.5 1.3 31 823-853 461-500 (1374)
359 KOG4577 Transcription factor L 70.1 1.5 3.2E-05 42.3 0.1 47 823-872 61-107 (383)
360 PRK04406 hypothetical protein; 69.9 50 0.0011 25.6 8.9 47 755-801 14-60 (75)
361 PHA02862 5L protein; Provision 69.8 4.6 0.0001 34.9 2.9 46 823-869 3-54 (156)
362 KOG2789 Putative Zn-finger pro 69.4 2.2 4.8E-05 43.4 1.1 33 821-853 73-107 (482)
363 PF13834 DUF4193: Domain of un 69.4 1.4 3.1E-05 35.3 -0.2 28 821-848 69-98 (99)
364 PF10234 Cluap1: Clusterin-ass 68.8 1.3E+02 0.0028 30.1 17.4 150 524-683 111-261 (267)
365 cd00632 Prefoldin_beta Prefold 68.7 69 0.0015 26.8 11.7 25 774-798 78-102 (105)
366 KOG1356 Putative transcription 68.6 1.2 2.7E-05 50.2 -0.9 46 823-868 230-282 (889)
367 TIGR01000 bacteriocin_acc bact 68.6 2E+02 0.0043 32.0 26.2 25 774-798 292-316 (457)
368 KOG2169 Zn-finger transcriptio 68.3 3.1 6.7E-05 47.7 2.1 53 820-872 304-360 (636)
369 COG3364 Zn-ribbon containing p 67.8 2.3 5E-05 33.9 0.7 25 837-866 5-29 (112)
370 PF15397 DUF4618: Domain of un 67.8 1.3E+02 0.0029 29.8 29.4 11 508-518 122-132 (258)
371 TIGR01000 bacteriocin_acc bact 67.8 2E+02 0.0044 31.9 25.2 22 591-612 97-118 (457)
372 PF08581 Tup_N: Tup N-terminal 67.8 58 0.0013 25.6 12.2 19 782-800 59-77 (79)
373 PRK02119 hypothetical protein; 67.5 55 0.0012 25.2 8.6 49 753-801 10-58 (73)
374 PF03962 Mnd1: Mnd1 family; I 67.3 1.1E+02 0.0025 28.8 13.3 61 510-570 66-126 (188)
375 PF14197 Cep57_CLD_2: Centroso 67.2 54 0.0012 25.0 9.8 59 206-264 4-62 (69)
376 PF10212 TTKRSYEDQ: Predicted 67.0 1.7E+02 0.0037 32.2 14.3 94 578-674 421-514 (518)
377 PLN02915 cellulose synthase A 66.6 3 6.5E-05 49.1 1.6 46 823-868 16-68 (1044)
378 TIGR03017 EpsF chain length de 66.6 2.1E+02 0.0046 31.6 25.8 25 775-799 344-368 (444)
379 PF09538 FYDLN_acid: Protein o 66.3 3.1 6.7E-05 34.8 1.2 28 820-847 7-39 (108)
380 PF15254 CCDC14: Coiled-coil d 66.2 2.5E+02 0.0055 32.4 25.7 17 479-495 335-351 (861)
381 COG1198 PriA Primosomal protei 66.1 2.1 4.6E-05 49.2 0.3 44 821-866 434-484 (730)
382 PF09889 DUF2116: Uncharacteri 66.0 3.8 8.2E-05 29.7 1.4 15 856-870 2-16 (59)
383 PF05064 Nsp1_C: Nsp1-like C-t 66.0 10 0.00022 32.5 4.4 69 32-100 30-98 (116)
384 PLN02400 cellulose synthase 65.8 2.7 5.9E-05 49.7 1.1 45 824-868 38-89 (1085)
385 PF15358 TSKS: Testis-specific 65.4 1.8E+02 0.0039 30.4 23.3 65 753-820 334-398 (558)
386 PRK09343 prefoldin subunit bet 65.3 91 0.002 27.0 13.5 34 768-801 80-113 (121)
387 PF15290 Syntaphilin: Golgi-lo 65.1 1.5E+02 0.0032 29.4 14.6 10 713-722 92-101 (305)
388 PRK13169 DNA replication intia 65.0 46 0.00099 28.0 7.7 19 781-799 37-55 (110)
389 PF13465 zf-H2C2_2: Zinc-finge 65.0 2 4.4E-05 25.2 -0.1 13 856-868 13-25 (26)
390 PRK05978 hypothetical protein; 64.9 3.7 8.1E-05 36.5 1.5 32 823-870 34-65 (148)
391 PRK09841 cryptic autophosphory 64.8 2.6E+02 0.0057 33.3 17.2 34 635-668 262-295 (726)
392 COG1645 Uncharacterized Zn-fin 64.8 1.8 3.9E-05 37.1 -0.4 23 823-849 29-51 (131)
393 KOG2041 WD40 repeat protein [G 64.6 2.9 6.2E-05 46.1 0.9 25 845-869 1159-1186(1189)
394 PF03833 PolC_DP2: DNA polymer 64.5 2.2 4.7E-05 48.6 0.0 45 823-870 656-705 (900)
395 PF04710 Pellino: Pellino; In 63.8 2.3 5E-05 43.7 0.0 45 822-866 277-337 (416)
396 PRK00420 hypothetical protein; 63.5 2.2 4.7E-05 35.8 -0.2 11 823-833 24-34 (112)
397 KOG3476 Microtubule-associated 63.1 1.4 3.1E-05 33.6 -1.1 36 823-868 55-90 (100)
398 KOG2391 Vacuolar sorting prote 63.1 81 0.0018 32.1 10.3 53 48-100 221-273 (365)
399 KOG0309 Conserved WD40 repeat- 63.1 4.4 9.5E-05 45.1 1.9 40 822-862 1028-1069(1081)
400 PF10013 DUF2256: Uncharacteri 62.8 4.4 9.6E-05 26.7 1.1 12 857-868 8-19 (42)
401 PF04102 SlyX: SlyX; InterPro 62.7 61 0.0013 24.7 7.5 46 755-800 7-52 (69)
402 PRK06266 transcription initiat 62.2 5.6 0.00012 37.1 2.2 34 822-871 117-150 (178)
403 COG0068 HypF Hydrogenase matur 62.2 3.5 7.6E-05 46.1 1.0 24 844-867 153-183 (750)
404 TIGR00373 conserved hypothetic 62.1 7.6 0.00016 35.5 3.0 34 822-871 109-142 (158)
405 PRK09841 cryptic autophosphory 61.7 3.4E+02 0.0074 32.3 17.5 15 839-853 542-556 (726)
406 PF10164 DUF2367: Uncharacteri 60.9 4.2 9.1E-05 32.5 1.0 37 824-867 51-98 (98)
407 COG5183 SSM4 Protein involved 60.8 5.7 0.00012 44.6 2.3 51 823-873 13-71 (1175)
408 PRK02793 phi X174 lysis protei 60.5 76 0.0016 24.4 8.5 50 753-802 9-58 (72)
409 KOG3576 Ovo and related transc 60.3 1.2 2.6E-05 40.7 -2.4 49 821-869 116-185 (267)
410 smart00290 ZnF_UBP Ubiquitin C 60.3 3.8 8.3E-05 28.7 0.7 24 824-847 1-24 (50)
411 COG1675 TFA1 Transcription ini 60.2 8.5 0.00018 35.4 2.9 33 823-871 114-146 (176)
412 PF07503 zf-HYPF: HypF finger; 60.0 8.9 0.00019 24.5 2.1 25 844-868 1-32 (35)
413 PF05766 NinG: Bacteriophage L 59.8 19 0.00041 33.6 5.1 48 821-870 86-136 (189)
414 smart00647 IBR In Between Ring 59.6 3.3 7.2E-05 30.9 0.2 34 821-854 17-60 (64)
415 KOG4080 Mitochondrial ribosoma 59.6 5.2 0.00011 35.4 1.4 31 817-854 88-118 (176)
416 PF04912 Dynamitin: Dynamitin 59.4 2.6E+02 0.0056 30.2 26.8 52 515-566 89-144 (388)
417 KOG2196 Nuclear porin [Nuclear 59.2 1.8E+02 0.0038 28.3 21.0 12 790-801 236-247 (254)
418 KOG0288 WD40 repeat protein Ti 58.7 2.5E+02 0.0053 29.7 17.0 6 601-606 30-35 (459)
419 KOG2807 RNA polymerase II tran 58.5 4.5 9.7E-05 40.2 1.0 25 839-864 350-374 (378)
420 PF08581 Tup_N: Tup N-terminal 58.2 90 0.0019 24.5 12.1 45 606-650 12-56 (79)
421 PF08172 CASP_C: CASP C termin 57.8 1.8E+02 0.004 28.9 11.9 54 664-717 82-135 (248)
422 TIGR02300 FYDLN_acid conserved 57.7 3.6 7.7E-05 34.9 0.1 11 822-832 9-19 (129)
423 KOG4642 Chaperone-dependent E3 57.5 6.9 0.00015 37.6 1.9 54 823-876 212-265 (284)
424 PF15450 DUF4631: Domain of un 57.4 3E+02 0.0064 30.3 59.1 16 303-318 95-110 (531)
425 PF13851 GAS: Growth-arrest sp 57.2 1.8E+02 0.004 27.8 27.9 185 628-819 4-190 (201)
426 PRK12495 hypothetical protein; 57.1 19 0.00041 34.1 4.6 60 769-848 4-64 (226)
427 COG4338 Uncharacterized protei 57.0 3 6.5E-05 28.0 -0.3 13 856-868 11-23 (54)
428 PF12777 MT: Microtubule-bindi 56.9 2.6E+02 0.0057 29.5 22.6 223 626-855 1-342 (344)
429 PF04102 SlyX: SlyX; InterPro 56.9 80 0.0017 24.0 7.3 52 595-646 1-52 (69)
430 COG4068 Uncharacterized protei 56.8 7.4 0.00016 27.5 1.5 17 856-872 7-23 (64)
431 PF14446 Prok-RING_1: Prokaryo 56.8 6.3 0.00014 27.9 1.2 40 824-868 7-52 (54)
432 PRK14559 putative protein seri 55.9 6.4 0.00014 44.9 1.8 36 825-869 18-53 (645)
433 KOG2751 Beclin-like protein [S 55.8 2.8E+02 0.0061 29.6 15.5 123 642-766 145-267 (447)
434 KOG3475 60S ribosomal protein 55.8 6.3 0.00014 30.2 1.1 25 842-866 16-40 (92)
435 KOG4687 Uncharacterized coiled 55.8 2.1E+02 0.0045 28.0 21.0 193 577-769 9-205 (389)
436 PRK04406 hypothetical protein; 55.7 96 0.0021 24.1 8.3 57 590-646 3-59 (75)
437 KOG2066 Vacuolar assembly/sort 55.7 3.9 8.3E-05 46.1 0.0 38 824-863 786-830 (846)
438 COG4098 comFA Superfamily II D 55.5 4.1 9E-05 41.2 0.2 30 820-849 37-67 (441)
439 TIGR02680 conserved hypothetic 55.5 5.8E+02 0.013 33.0 77.1 572 116-785 195-989 (1353)
440 PF15294 Leu_zip: Leucine zipp 55.3 2.3E+02 0.0051 28.4 16.5 142 624-768 130-276 (278)
441 PF10234 Cluap1: Clusterin-ass 54.9 2.3E+02 0.0051 28.4 18.8 142 598-739 120-261 (267)
442 PF09723 Zn-ribbon_8: Zinc rib 54.9 2.3 5.1E-05 28.5 -1.1 25 839-865 10-34 (42)
443 PRK10698 phage shock protein P 54.8 2.2E+02 0.0047 27.9 22.5 183 637-821 14-202 (222)
444 KOG4809 Rab6 GTPase-interactin 54.6 3.3E+02 0.0072 30.0 37.9 321 489-816 233-585 (654)
445 TIGR00622 ssl1 transcription f 54.5 8.2 0.00018 32.3 1.7 41 825-866 58-112 (112)
446 KOG0239 Kinesin (KAR3 subfamil 54.5 4.1E+02 0.0089 31.0 22.1 205 596-800 98-313 (670)
447 PF12906 RINGv: RING-variant d 53.9 4.9 0.00011 27.8 0.3 36 825-863 1-47 (47)
448 KOG3726 Uncharacterized conser 53.9 7 0.00015 43.4 1.6 37 824-864 656-696 (717)
449 COG1592 Rubrerythrin [Energy p 53.8 3.8 8.3E-05 37.2 -0.3 22 845-866 137-158 (166)
450 KOG3842 Adaptor protein Pellin 53.7 7.1 0.00015 38.4 1.4 58 806-864 273-348 (429)
451 KOG1962 B-cell receptor-associ 53.6 2.1E+02 0.0046 27.5 12.3 97 661-762 114-210 (216)
452 PF09297 zf-NADH-PPase: NADH p 53.4 1.7 3.8E-05 27.0 -1.8 23 842-864 3-28 (32)
453 KOG0269 WD40 repeat-containing 53.4 11 0.00023 42.5 2.8 53 824-877 781-837 (839)
454 COG1842 PspA Phage shock prote 53.4 2.3E+02 0.0049 27.7 24.3 187 630-816 14-220 (225)
455 COG1655 Uncharacterized protei 53.0 1.6 3.4E-05 40.9 -2.8 57 819-875 16-80 (267)
456 PRK10246 exonuclease subunit S 52.9 5.6E+02 0.012 32.1 75.6 567 206-803 215-883 (1047)
457 KOG2807 RNA polymerase II tran 52.6 3.4 7.3E-05 41.0 -0.9 44 825-868 293-356 (378)
458 PF07754 DUF1610: Domain of un 52.5 3.3 7.2E-05 23.7 -0.6 21 845-865 1-24 (24)
459 KOG1280 Uncharacterized conser 52.4 6.8 0.00015 39.4 1.1 43 823-865 9-87 (381)
460 PRK04325 hypothetical protein; 52.3 1.1E+02 0.0024 23.7 8.2 55 747-801 4-58 (74)
461 PRK11519 tyrosine kinase; Prov 52.2 4.7E+02 0.01 31.1 18.1 137 664-800 256-397 (719)
462 PRK02119 hypothetical protein; 52.1 1.1E+02 0.0024 23.7 8.0 55 592-646 3-57 (73)
463 PF07889 DUF1664: Protein of u 50.9 1.7E+02 0.0036 25.5 13.3 85 713-800 39-123 (126)
464 PF14205 Cys_rich_KTR: Cystein 50.6 5.1 0.00011 28.1 -0.0 26 823-848 5-34 (55)
465 PF02403 Seryl_tRNA_N: Seryl-t 50.6 1.5E+02 0.0033 24.9 9.6 72 361-432 29-100 (108)
466 PLN03086 PRLI-interacting fact 50.5 12 0.00026 41.6 2.7 51 817-867 448-514 (567)
467 KOG2264 Exostosin EXT1L [Signa 50.4 1.5E+02 0.0033 32.4 10.4 70 586-655 81-150 (907)
468 COG1842 PspA Phage shock prote 50.1 2.6E+02 0.0056 27.4 24.3 182 635-820 12-204 (225)
469 TIGR00595 priA primosomal prot 50.0 5.1 0.00011 44.8 -0.2 45 817-866 208-262 (505)
470 KOG0230 Phosphatidylinositol-4 49.9 4.2 9.1E-05 49.3 -0.9 52 824-876 7-59 (1598)
471 TIGR02977 phageshock_pspA phag 49.9 2.6E+02 0.0056 27.3 22.4 163 637-801 14-180 (219)
472 PF14319 Zn_Tnp_IS91: Transpos 49.7 5.1 0.00011 33.9 -0.2 25 822-848 42-66 (111)
473 COG2900 SlyX Uncharacterized p 49.6 1.1E+02 0.0025 23.2 8.1 61 749-809 5-65 (72)
474 PF10046 BLOC1_2: Biogenesis o 49.3 1.5E+02 0.0033 24.5 12.2 85 631-715 12-99 (99)
475 PF10205 KLRAQ: Predicted coil 49.3 1.5E+02 0.0033 24.5 10.9 70 637-706 2-71 (102)
476 PF11932 DUF3450: Protein of u 49.3 2.8E+02 0.0062 27.7 19.0 130 691-820 23-159 (251)
477 KOG1850 Myosin-like coiled-coi 49.0 3E+02 0.0065 27.9 42.8 312 456-796 17-329 (391)
478 KOG0239 Kinesin (KAR3 subfamil 49.0 5E+02 0.011 30.4 20.9 208 589-796 98-316 (670)
479 COG2888 Predicted Zn-ribbon RN 48.8 11 0.00024 27.0 1.4 41 824-864 11-57 (61)
480 PF13913 zf-C2HC_2: zinc-finge 48.8 8.4 0.00018 22.4 0.7 10 859-868 4-13 (25)
481 PRK11827 hypothetical protein; 48.6 9.2 0.0002 27.9 1.0 44 817-877 3-46 (60)
482 PRK11519 tyrosine kinase; Prov 48.3 5.4E+02 0.012 30.6 18.2 138 586-723 255-397 (719)
483 PF04871 Uso1_p115_C: Uso1 / p 48.1 2E+02 0.0043 25.5 15.9 107 694-800 3-111 (136)
484 PF10217 DUF2039: Uncharacteri 48.0 11 0.00023 30.3 1.4 39 819-866 52-90 (92)
485 PF09787 Golgin_A5: Golgin sub 47.9 4.6E+02 0.0099 29.6 35.9 301 511-817 107-430 (511)
486 COG5242 TFB4 RNA polymerase II 47.4 9.3 0.0002 35.7 1.1 25 823-868 261-285 (296)
487 PF14073 Cep57_CLD: Centrosome 47.3 2.4E+02 0.0052 26.2 22.6 169 626-797 4-172 (178)
488 PF04728 LPP: Lipoprotein leuc 47.2 1.1E+02 0.0023 22.1 8.3 53 590-642 2-54 (56)
489 TIGR02977 phageshock_pspA phag 47.1 2.8E+02 0.0061 27.0 25.1 189 630-818 14-219 (219)
490 PF01920 Prefoldin_2: Prefoldi 47.1 1.7E+02 0.0036 24.4 11.0 79 721-799 2-102 (106)
491 PRK00564 hypA hydrogenase nick 47.0 6.2 0.00013 33.8 -0.1 26 841-866 70-97 (117)
492 KOG1818 Membrane trafficking a 47.0 5.4 0.00012 44.3 -0.5 39 825-863 168-217 (634)
493 PRK01343 zinc-binding protein; 46.9 15 0.00033 26.4 1.8 17 856-872 8-24 (57)
494 TIGR00627 tfb4 transcription f 46.9 12 0.00025 37.8 1.8 24 823-867 256-279 (279)
495 PF07800 DUF1644: Protein of u 46.4 8.6 0.00019 34.1 0.7 21 821-841 1-21 (162)
496 PF06844 DUF1244: Protein of u 46.4 11 0.00024 27.7 1.1 11 844-854 12-22 (68)
497 PF10805 DUF2730: Protein of u 46.3 1.8E+02 0.0039 24.5 9.4 66 206-271 34-101 (106)
498 PRK11032 hypothetical protein; 46.2 2.3E+02 0.0051 25.8 12.6 144 696-866 3-151 (160)
499 PRK00295 hypothetical protein; 46.2 1.3E+02 0.0028 22.8 8.1 51 596-646 3-53 (68)
500 PF12777 MT: Microtubule-bindi 46.2 3.9E+02 0.0084 28.3 24.7 297 368-673 1-310 (344)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=335.15 Aligned_cols=686 Identities=29% Similarity=0.403 Sum_probs=482.6
Q ss_pred hHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHhccccCCchhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002816 155 DRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQ 234 (877)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~ 234 (877)
.+..++......+......++.+....+.+...+... -..+......+..+...++...+.+..++..+...+..+.
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~---~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~ 82 (698)
T KOG0978|consen 6 PLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRV---EEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISELL 82 (698)
T ss_pred hhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556666666666555554433321 0011225667788888999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcccccccCcccCCccchhhhhhHHHHHHHHHHHHH
Q 002816 235 DIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMD 314 (877)
Q Consensus 235 ~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 314 (877)
+.+.....+...+...++.+..+++.+......+............. ...++ +..++..+-....+..+...+++++.
T Consensus 83 ~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t-~~~~~-~~~~~~~t~~~t~~~~l~~~iee~~~ 160 (698)
T KOG0978|consen 83 DKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT-YGNGN-GSLSGTITVNSTELEELRDEIEELRE 160 (698)
T ss_pred HHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCcc-cccCcccccchhhhhhhccchhHHHH
Confidence 99999999999999999999999999988877776665554443222 11111 12222233333447777788888887
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHHhhhhhhhhcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 315 QASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (877)
Q Consensus 315 ~~~~~~~el~~l~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 394 (877)
.......+++.++..+..+..++..+...+..+.. ........+..+. .+..+ ... ..
T Consensus 161 ~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~e~~~~~-----~NE~l---~~~--~~ 218 (698)
T KOG0978|consen 161 LASTRMEELEKLQLYSDEILRQLDRFRVELRSLKE------------KVRSETFELRCLQ-----YNEEL---QRK--TM 218 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHH-----hhhhc---ccc--cc
Confidence 77788888888888888888887777776532210 0000000000000 00000 000 00
Q ss_pred hhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHhcchHHHHHHHHHHHHh
Q 002816 395 NMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG-RKEIIAEFRALVSSFPEDMSAMQRQLSKY 473 (877)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l~~~l~~~~~~~~-~~~~~~el~~~~~~l~~~~~~l~~~~~~~ 473 (877)
...+.. ....+..++..+.....+++++....+......+ +..+..++..+...+......+......+
T Consensus 219 ----~~~e~~------~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~ 288 (698)
T KOG0978|consen 219 ----ESDEAI------NSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYEREL 288 (698)
T ss_pred ----hhhhhh------ccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011 1122456666777777777777766665444443 45788888888888888888887766667
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHhhHHHHHHHHhhcHHHHHHHHHHHH-HHHHhHhhHHHHHHHHHHHhccCCChhhHHHH
Q 002816 474 KEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQA-MVQDLTDSNLELKLILDMYRRESTDSRDVLAA 552 (877)
Q Consensus 474 ~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~ei~~l~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l 552 (877)
......+..+++...+....+.........+...++........+.. -+..+......++.............+++...
T Consensus 289 k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~ 368 (698)
T KOG0978|consen 289 KDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVA 368 (698)
T ss_pred hcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHH
Confidence 77777777777666665555544333344455555555555444442 22222222333333333333333343344444
Q ss_pred HHHHHH-HHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHhhHHH
Q 002816 553 RDLEYK-AWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMR-QKLEAFKR---DMVSLSDALKSKNEE 627 (877)
Q Consensus 553 ~~~~~~-~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~-~~~~~~~~---~~~~l~~~l~~~~~~ 627 (877)
..+... ++..++.+...+.....+.++....+...-.+....-...+...+. ...+.... +...+...+......
T Consensus 369 k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~ 448 (698)
T KOG0978|consen 369 KSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKN 448 (698)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 433333 4445555554444333332222222222222333333333444444 23344444 334444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 002816 628 IEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAAR 707 (877)
Q Consensus 628 ~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~ 707 (877)
...+..++..+..++++++.++..+..++.+.++..-.++.+...+.+.++.+..++..+...+.++......+...+..
T Consensus 449 ~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~ 528 (698)
T KOG0978|consen 449 FKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGK 528 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 708 IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEE 787 (877)
Q Consensus 708 l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~ 787 (877)
++++...+......+..++..+...++.+.....++...+..++..++.....+..+...+.+...+++.+.....++++
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCcchHHHHHHHHHhccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 788 DLEMGRRKVLRLQAQTEGSSIIEELQQELREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 788 el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
++..++.++..++....++..+..|.+++..|+..++||+|+.+|++.|+++|||+||..|+.+++.+|+|+||.|+.+|
T Consensus 609 E~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 609 ELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAF 688 (698)
T ss_pred HHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 99999999999999988777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCC
Q 002816 868 SPNDVKPVYI 877 (877)
Q Consensus 868 ~~~~~~~~~~ 877 (877)
|++||+++||
T Consensus 689 ganDv~~I~l 698 (698)
T KOG0978|consen 689 GANDVHRIHL 698 (698)
T ss_pred CcccccccCC
Confidence 9999999997
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=5.5e-18 Score=207.93 Aligned_cols=729 Identities=12% Similarity=0.112 Sum_probs=405.8
Q ss_pred CCCCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHhhhccCCC
Q 002816 28 PFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESS 107 (877)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 107 (877)
.|+..+......+..+......+...+..++.....+...+|.|+++...|...+..+...+.++...+..-++ +
T Consensus 309 ~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 383 (1311)
T TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGF-----E 383 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC-----C
Confidence 36666777888888999999999999999999999999999999999999999999999999988888763321 1
Q ss_pred CCccccccccccCCCCCCchhHHHHHHhhccCCCCCCCCCCcchhHHhHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002816 108 NGQESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAA 187 (877)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (877)
.+ | .....+..|...+ ..........+..+...+..........+..+...+....+.+......
T Consensus 384 ~~-~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~ 448 (1311)
T TIGR00606 384 RG-P----------FSERQIKNFHTLV----IERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEI 448 (1311)
T ss_pred Cc-c----------cchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 0001145566555 1111111222445566666667777777777777776666665555555
Q ss_pred HhccccCCchhhh---hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 002816 188 VLKDLQDGGSKQK---ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (877)
Q Consensus 188 l~~~~~~~~~~~~---~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~ 264 (877)
+.+.......... .+......+..+...+..+...+..+..... ...+..+|...+..+..++.++..+...
T Consensus 449 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~le~~~~~l~~~ 523 (1311)
T TIGR00606 449 LEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL-----TETLKKEVKSLQNEKADLDRKLRKLDQE 523 (1311)
T ss_pred HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444322222222 3333344555555555555555544444332 2336666777777777777777777666
Q ss_pred HHHHHHhhhhhcCCCcccccccCcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHhh
Q 002816 265 LAALRAERDVTKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (877)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~el~~l~~~~~~l~~e~~~l~~~l 344 (877)
+..+. ........+.-++..+......+..+...+......+-. .+
T Consensus 524 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~---~~ 569 (1311)
T TIGR00606 524 MEQLN-------------------------------HHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG---YF 569 (1311)
T ss_pred HHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC
Confidence 66655 245555666666666666666665555544333322110 00
Q ss_pred hhhhhhcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHhh------hhhhhhhhHHHH
Q 002816 345 KSVKCLSSSKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRR------SSAVTDSKIADL 418 (877)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 418 (877)
... ..-...+..+...+..++.....+...+..++..+..+...+.... ..+..... .+..|...+..+
T Consensus 570 -~~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~---~eL~~~~~~i~~~~~~~~~~~~L~~~ 644 (1311)
T TIGR00606 570 -PNK-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKE---EQLSSYEDKLFDVCGSQDEESDLERL 644 (1311)
T ss_pred -CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 000 0001112233333333333333333333333333333333333333 11121111 223455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------H--hc------------cCCc-hhHHHHHHHHHhcchHHHHHHHHHHHHhHHH
Q 002816 419 GIEIQKQIDEKNRIEMRLEE-------A--SR------------EPGR-KEIIAEFRALVSSFPEDMSAMQRQLSKYKEA 476 (877)
Q Consensus 419 e~~l~~~~~~~~~l~~~l~~-------~--~~------------~~~~-~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~ 476 (877)
+..+..+..++..+...... . .. ..+. ..+..++...+..+......+...+..+...
T Consensus 645 ~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 724 (1311)
T TIGR00606 645 KEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 66666666555544433322 2 10 0011 2456666667776665666666666666666
Q ss_pred HHHHHHHHHhHHhHHHHHHhhHHHHHHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 002816 477 ALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLE 556 (877)
Q Consensus 477 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 556 (877)
...+..+...+..+.... ...++.+...+..+...+..+...+..+...+..+...++.+.....++..+..+..++
T Consensus 725 ~e~l~~l~~~~~~~~~l~---~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei 801 (1311)
T TIGR00606 725 RDEMLGLAPGRQSIIDLK---EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMEL 801 (1311)
T ss_pred HHHHHHhhhhHHHHHHHH---HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555554432 23567777777777777777777777777777777777776666555665577888888
Q ss_pred HHHHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHH
Q 002816 557 YKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEE---IEAYLS 633 (877)
Q Consensus 557 ~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~---~~~l~~ 633 (877)
..++.++..+...+.......++..+...+..+...+..+...+..+.........++..|...+..+... +.....
T Consensus 802 ~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 802 KDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred HHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777544433345666666667777777777777777777777777777774444333322 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHhHHHHHH
Q 002816 634 EIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKH----MMESEIQQANASLNFFDMKAARIE 709 (877)
Q Consensus 634 e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~----~l~~~~~~~~~~l~~~~~~~~~l~ 709 (877)
....+...+..+...+..+...+..+...+..+...+..+...+..+..... .+...+..+...+..+......+.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555544333222 222223333333333333333333
Q ss_pred HHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 002816 710 NQLRFC-LDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKS---------RLTLMELQIELVKER 779 (877)
Q Consensus 710 ~~~~~~-~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l---------~~~l~~~~~~l~~~~ 779 (877)
.+.... ...+..+..++..+...+..+...+..+...+..+...+..+......+ ...+.++..++..+.
T Consensus 962 ~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 962 NKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 1223344444444433444444444444444444444433333332222 233333333333332
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHhhhhc-CcchHHHHHHHHHhccCcc
Q 002816 780 F-----AKKRLEEDLEMGRRKVLRLQAQTE-GSSIIEELQQELREYREIL 823 (877)
Q Consensus 780 ~-----~~~~~~~el~~l~~~l~~l~~~~~-~~~~~~~l~~~~~~l~~~l 823 (877)
. ....+..+...+...+..|.+.+. ..|.+..++.++..+...|
T Consensus 1042 ~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1042 KEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 446778888888888888887665 5678888888888877776
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.92 E-value=7.8e-17 Score=192.05 Aligned_cols=178 Identities=18% Similarity=0.272 Sum_probs=122.8
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 574 SLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLL 653 (877)
Q Consensus 574 ~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~ 653 (877)
..+..++.++....++.+.+..+...+.+++.+++.......++...+...+..+..+.+++..+...++.+......+.
T Consensus 1615 elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE 1694 (1930)
T KOG0161|consen 1615 ELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAE 1694 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33455777777888999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002816 654 QQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANL 733 (877)
Q Consensus 654 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~ 733 (877)
.++.++.+.+..+..... .+......++.++..++.+++..........+..+........+..++...+...
T Consensus 1695 ~e~~E~~e~i~~~~~~~s-------~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1695 LELEELAERVNELNAQNS-------SLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred HHHHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888777777776554433 3334444445555555555555555555555555555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 734 ENTQKRLSDVRKSSVQVRGSLEESQ 758 (877)
Q Consensus 734 ~~~~~~~~~l~~~~~~l~~~l~~~~ 758 (877)
..+......++..+.++..++.+++
T Consensus 1768 ~~le~~k~~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1768 QKLERLKKSLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.84 E-value=6.4e-12 Score=150.86 Aligned_cols=71 Identities=24% Similarity=0.245 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002816 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (877)
Q Consensus 359 l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l 432 (877)
...++..+...+......+..++..+..+...+.++. +.++..+.....++....++...+..+..+++..
T Consensus 1074 ke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~---e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1074 KESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE---EELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556666666666666665555 4444444444444455555555555555544444
No 5
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.82 E-value=8.3e-22 Score=227.15 Aligned_cols=717 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHhhhccCCCCC
Q 002816 30 FPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSNG 109 (877)
Q Consensus 30 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 109 (877)
...+.-++..+..+..+...-......+++.+++|+++|.+|+.++++....+.++++...+|..+|..+..+++...+.
T Consensus 10 ~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~ 89 (859)
T PF01576_consen 10 EEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGA 89 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34445566666677777777777788899999999999999999999999999999999999999999999888766665
Q ss_pred ccccccccccCCCCCCchhHHHHHHhhccCCCCCCCCCCcchhHHhHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 002816 110 QESRCLSIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVL 189 (877)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 189 (877)
+.+ +............-+.+-++. . ...++.....++.++......+...++.+...+..++.....+.
T Consensus 90 t~a----q~E~~kkrE~El~~Lrr~LEe----~---~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~ 158 (859)
T PF01576_consen 90 TQA----QIELNKKREAELAKLRRDLEE----A---NLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLE 158 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHh----hHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 222322222222222222111 1 22245556667788888878888777777777776665555443
Q ss_pred cc----ccCCchhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002816 190 KD----LQDGGSKQKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (877)
Q Consensus 190 ~~----~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~ 265 (877)
.. ...+.............+..+...+..+..++......+..+.....++..++..+...+.+....+..+....
T Consensus 159 ~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k 238 (859)
T PF01576_consen 159 AELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREK 238 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 11222222233444444555666666666666666666666666666666666666665555555555444433
Q ss_pred HHHHHhhhhhcCCC---cccccccCcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHH
Q 002816 266 AALRAERDVTKGAF---FPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (877)
Q Consensus 266 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~el~~l~~~~~~l~~e~~~l~~ 342 (877)
..+...+..+...+ ++.... +...+..+..++..++..+..-......+...+..+..++..++.
T Consensus 239 ~~L~~qLeelk~~leeEtr~k~~------------L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~ 306 (859)
T PF01576_consen 239 SSLESQLEELKRQLEEETRAKQA------------LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKK 306 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHhHhhhhhh------------hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHH
Confidence 33333333222221 111111 111122233333333333332222233333333333333333333
Q ss_pred hhhh-----------------------------hhhhcc--hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 343 TLKS-----------------------------VKCLSS--SKAFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (877)
Q Consensus 343 ~l~~-----------------------------~~~~~~--~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~ 391 (877)
.+.. ...... ......+..++..+...+.........+......|...+
T Consensus 307 K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l 386 (859)
T PF01576_consen 307 KYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQL 386 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3332 111110 111223444444444444444444444444444444444
Q ss_pred HHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHhcchHHHHHHHHHHH
Q 002816 392 TELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLS 471 (877)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~ 471 (877)
.++.. ....+....+.+......+..++..+...++.+...+..+ ......|..++..+...+.
T Consensus 387 ~e~k~---~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~l-------------ere~k~L~~El~dl~~q~~ 450 (859)
T PF01576_consen 387 AEWKA---KVEELQAERDAAQREARELETELFKLKNELEELQEQLEEL-------------ERENKQLQDELEDLTSQLD 450 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHH-------------HHHHHHHHHhhccchhhhh
Confidence 44441 1122222222222333333333333333333333222211 1111122222222222222
Q ss_pred HhHHHHHHH----HHHHHhHHhHHHHHHhhHHHHHHHHhhcHHHHHHHHHHHHHHH-HhHhhHHHHHHHHHHHhccCCCh
Q 002816 472 KYKEAALDI----HILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQ-DLTDSNLELKLILDMYRRESTDS 546 (877)
Q Consensus 472 ~~~~~~~~l----~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~ei~~l~~~~~-~l~~~~~~l~~~~~~~~~~~~~~ 546 (877)
..+..+..+ ..|......+...+......+......+.++..++..++..+. .+.....++......+...+..+
T Consensus 451 ~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~l 530 (859)
T PF01576_consen 451 DAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESL 530 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence 222222222 2333444455555555555555555566666666666666553 22222222222221111111111
Q ss_pred hh--------HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 547 RD--------VLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLS 618 (877)
Q Consensus 547 ~~--------~~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~ 618 (877)
.. ...+......++.++..+.. .++..+.....+...+..+...+.+++..++........+.
T Consensus 531 e~~LE~E~k~r~~~~r~kkKLE~~l~eLe~---------~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~ 601 (859)
T PF01576_consen 531 EAELEEERKERAEALREKKKLESDLNELEI---------QLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELR 601 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00 11111222223333333332 34555555667778888889999999999999888888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002816 619 DALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASL 698 (877)
Q Consensus 619 ~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l 698 (877)
..+...+..+..+..++..+...++........+..++.++...+..+..... .+...+..++..+..+...+
T Consensus 602 ~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~-------~l~~~kr~le~~i~~l~~el 674 (859)
T PF01576_consen 602 EQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNS-------SLSEEKRKLEAEIQQLEEEL 674 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888777777777777777777666655444 55666777777788888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 002816 699 NFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSK--------VYKSRLTLME 770 (877)
Q Consensus 699 ~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~--------~~~l~~~l~~ 770 (877)
+........+.+........+..+..++...+.....+......++..+.++..++..++.. +..+..++.+
T Consensus 675 eE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~e 754 (859)
T PF01576_consen 675 EEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRE 754 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHH
Confidence 88888888888888888888888888888877777777777777777788787777776654 5566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 771 LQIELVKERFAKKRLEEDLEMGRRKVLRLQA 801 (877)
Q Consensus 771 ~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~ 801 (877)
++.+++............+.++.+++..+..
T Consensus 755 LE~~Le~E~r~~~~~~k~~rk~er~~kEl~~ 785 (859)
T PF01576_consen 755 LEEELESEQRRRAEAQKQLRKLERRVKELQF 785 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777777777777777777777777654
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.82 E-value=2e-12 Score=157.20 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 002816 784 RLEEDLEMGRRKVLRLQAQTE 804 (877)
Q Consensus 784 ~~~~el~~l~~~l~~l~~~~~ 804 (877)
.++..+..+...+..||++|.
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~ 966 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNL 966 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCCh
Confidence 567788888888888888885
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.81 E-value=1.5e-12 Score=163.30 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 002816 783 KRLEEDLEMGRRKVLRLQAQTE 804 (877)
Q Consensus 783 ~~~~~el~~l~~~l~~l~~~~~ 804 (877)
..+...+..+..++..++++|.
T Consensus 954 ~~l~~~l~~l~~~i~~l~~vN~ 975 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALEPVNM 975 (1164)
T ss_pred HHHHHHHHHHHHHHHHcCCCCh
Confidence 4566677788888888888774
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=7.5e-13 Score=163.06 Aligned_cols=68 Identities=6% Similarity=0.057 Sum_probs=57.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHhhhccCCCC
Q 002816 41 AVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRARESSN 108 (877)
Q Consensus 41 ~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 108 (877)
..+......+......++..+..++..+..+...+....+.+......+......+..+...++....
T Consensus 401 ~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~ 468 (1311)
T TIGR00606 401 ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46778888888999999999999999999999999999999999988888888888888767654333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.78 E-value=2.6e-11 Score=152.86 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=14.4
Q ss_pred HHHHHhhccchhhHHHHHHhhHhHHHHHHHHH
Q 002816 68 FAQLKERQQPYDSTLKVVNKSWEELITDLESC 99 (877)
Q Consensus 68 ~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l 99 (877)
+..+..+......++..+...+..+...+..+
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L 198 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNEL 198 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.78 E-value=8.9e-10 Score=130.20 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=37.2
Q ss_pred chhHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHh
Q 002816 39 DTAVLQFQNQKLVQKLETQKVE------------YSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCS 100 (877)
Q Consensus 39 ~~~~l~~~~~~l~~~l~~~~~~------------~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 100 (877)
.|..|+.+|..|...++.+... ...+...+..+.+.++.....+......+..+......+.
T Consensus 533 nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~ 606 (1822)
T KOG4674|consen 533 NINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYK 606 (1822)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555544443322 2445566666777777777777777777777776666553
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.76 E-value=1.5e-10 Score=145.54 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002816 48 QKLVQKLETQKVEYSALENKFAQLKERQQ 76 (877)
Q Consensus 48 ~~l~~~l~~~~~~~~~l~~~~~~L~~~~~ 76 (877)
......+......+.++...+..|+.+..
T Consensus 173 ~~~~~~l~~~~~~l~el~~~~~~L~~q~~ 201 (1164)
T TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLE 201 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.75 E-value=1e-09 Score=133.93 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=10.1
Q ss_pred hhHHhHHHHhccCCCCCCCC
Q 002816 844 FCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 844 ~c~~C~~~~~~~~~~~Cp~c 863 (877)
+|.-|+-=-+. +.+.||+|
T Consensus 1074 LtAlAllFAi~-~~~PaPf~ 1092 (1163)
T COG1196 1074 LTALALLFAIQ-KYRPAPFY 1092 (1163)
T ss_pred HHHHHHHHHHH-hhCCCCee
Confidence 45544432222 34569998
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.74 E-value=3.8e-10 Score=142.43 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002816 786 EEDLEMGRRKVLRLQAQ 802 (877)
Q Consensus 786 ~~el~~l~~~l~~l~~~ 802 (877)
...+..++..+..||+.
T Consensus 964 ~~~~~~l~~~i~~lg~a 980 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENK 980 (1179)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 34567888889999984
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.69 E-value=1.5e-08 Score=120.15 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=41.6
Q ss_pred cchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHh
Q 002816 38 IDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCS 100 (877)
Q Consensus 38 ~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 100 (877)
........+..-|...+..++.+...|..+...|++-+...++....+..........+..+.
T Consensus 682 ~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le 744 (1822)
T KOG4674|consen 682 NELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLE 744 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334445556666777788888888888888888887777777766555555555555555444
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.68 E-value=2e-09 Score=120.47 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHhhhhhhhhc-chhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLS-SSKAFLSVKNQLEKSKSEVFKYQALFEKL 380 (877)
Q Consensus 302 ~~~l~~~l~~~~~~~~~~~~el~~l~~~~~~l~~e~~~l~~~l~~~~~~~-~~~~~~~l~~~l~~~~~~l~~~~~~~~~l 380 (877)
.+.+..++..++..+......++.++..+......+..+...|....... ...........+......+..+...+...
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~ 202 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERK 202 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555553211110 01111222234444555555555555555
Q ss_pred HHHHHHHHHHHHH---hhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 381 QVEKDNLAWRETE---LNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL 436 (877)
Q Consensus 381 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l~~~l 436 (877)
......+...+.. ..+.......+...+......+..++..+..+..++..+...+
T Consensus 203 e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 203 EKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG 261 (775)
T ss_pred HHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5544433222221 0100011122333344445556666666665555555555433
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=99.67 E-value=2.4e-09 Score=128.93 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 002816 554 DLEYKAWAHVHSLK 567 (877)
Q Consensus 554 ~~~~~~~~~~~~l~ 567 (877)
..+..+...+..+.
T Consensus 475 ~~~~~~~~~~~~le 488 (880)
T PRK02224 475 ERVEELEAELEDLE 488 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=99.67 E-value=2.4e-09 Score=129.00 Aligned_cols=38 Identities=8% Similarity=-0.057 Sum_probs=18.0
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 002816 502 ETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMY 539 (877)
Q Consensus 502 ~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 539 (877)
..+...+..+...+..+...+..+...+..+...+..+
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555444444444444433
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.66 E-value=6e-09 Score=116.64 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=33.3
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHhhhh
Q 002816 501 CETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLD 571 (877)
Q Consensus 501 ~~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~ 571 (877)
+..+...++....++..+..++.++.....++...++.+... +.........+..++..|...|+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkes------l~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKES------LRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHH
Confidence 455555566666666666666666666555554444433322 33333444444555555554443
No 19
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.3e-08 Score=111.56 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHhhhhhhhhcchh--hHhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 302 LRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSK--AFLSVKNQLEKSKSEVFKYQALFEK 379 (877)
Q Consensus 302 ~~~l~~~l~~~~~~~~~~~~el~~l~~~~~~l~~e~~~l~~~l~~~~~~~~~~--~~~~l~~~l~~~~~~l~~~~~~~~~ 379 (877)
+.+....+..-...+.........+.+.......-+...+..+..+....+.. .-..+..++...+..+..+...+..
T Consensus 338 i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~ 417 (1174)
T KOG0933|consen 338 IEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQ 417 (1174)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444455555555555555566655554443332 2357888999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002816 380 LQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPG 444 (877)
Q Consensus 380 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l~~~l~~~~~~~~ 444 (877)
....+.++..++....++. ..+..+.......+..++.+++.+...+..+..+.+
T Consensus 418 a~~k~e~~~~elk~~e~e~----------~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 418 AKLKLEHLRKELKLREGEL----------ATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHHHHHHHHhhhhHh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888988888887665333 334455555667777888888888888887766655
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=5.1e-08 Score=108.98 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHH
Q 002816 58 KVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELI 93 (877)
Q Consensus 58 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~ 93 (877)
..-+..+..++..|......+...+..+.+....+.
T Consensus 266 ~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE 301 (1293)
T KOG0996|consen 266 KEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALE 301 (1293)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666677777776666666666665554443
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.59 E-value=7.1e-08 Score=116.71 Aligned_cols=12 Identities=8% Similarity=-0.374 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCC
Q 002816 860 CPGCAASFSPND 871 (877)
Q Consensus 860 Cp~c~~~~~~~~ 871 (877)
+.+...||+.-|
T Consensus 815 ~lilDEp~~~lD 826 (880)
T PRK03918 815 LLILDEPTPFLD 826 (880)
T ss_pred eEEEeCCCcccC
Confidence 344556665544
No 22
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.58 E-value=1.9e-16 Score=183.06 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHhhhcc
Q 002816 54 LETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRAR 104 (877)
Q Consensus 54 l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 104 (877)
...+...+......+..+..++......+..+.+.+..+...|..+...++
T Consensus 6 ~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe 56 (859)
T PF01576_consen 6 KEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELE 56 (859)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666667777777777777777777777777777777765553
No 23
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.3e-07 Score=105.82 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002816 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKL 265 (877)
Q Consensus 209 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~ 265 (877)
+..+...+..+..++.........+..........+..++.++..+...++..+..+
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l 463 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEEREL 463 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444444444333
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=99.55 E-value=3.8e-07 Score=110.47 Aligned_cols=22 Identities=14% Similarity=0.490 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhHhhHHHHH
Q 002816 512 VAEIHKLQAMVQDLTDSNLELK 533 (877)
Q Consensus 512 ~~ei~~l~~~~~~l~~~~~~l~ 533 (877)
..++..+..++..+..++..+.
T Consensus 458 ~~ei~~l~~~~~~l~~~~~~l~ 479 (880)
T PRK03918 458 TAELKRIEKELKEIEEKERKLR 479 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333
No 25
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.4e-14 Score=120.77 Aligned_cols=55 Identities=35% Similarity=0.874 Sum_probs=49.7
Q ss_pred ccccccccccccc--ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 822 ILKCSICLERPKE--VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 822 ~l~C~~C~~~~~~--~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
.+.||||+..+.. |+.++|||+||..||+..+.. ..+||+|++.+..+.++++||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 4899999999976 567899999999999999884 667999999999999999997
No 26
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.32 E-value=7.1e-06 Score=94.92 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=61.5
Q ss_pred CCCCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHH
Q 002816 28 PFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESC 99 (877)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l 99 (877)
.|+..+.++......+......+......+......+.-+++.|+.....+...+......++.+...+...
T Consensus 308 n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~ 379 (1294)
T KOG0962|consen 308 NFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLD 379 (1294)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366677778888888888888999888888899999999999999999999999999998888887777643
No 27
>PRK01156 chromosome segregation protein; Provisional
Probab=99.30 E-value=1.5e-05 Score=96.27 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHH
Q 002816 509 ADQVAEIHKLQAMVQDLTDSNLELK 533 (877)
Q Consensus 509 ~~~~~ei~~l~~~~~~l~~~~~~l~ 533 (877)
..+..++..+...+..+...+.++.
T Consensus 419 ~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 419 QDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333
No 28
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.30 E-value=1.3e-12 Score=117.19 Aligned_cols=58 Identities=38% Similarity=0.846 Sum_probs=50.9
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhcc---------------CCCCCCCCCCCCCCCCCcccC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTES---------------RHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~---------------~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
....+.|+||++.+.+|++++|||+||+.|+..|+.. ....||.|+..+...++.++|
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3456899999999999999999999999999999742 235799999999999999887
No 29
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=8.3e-06 Score=89.82 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002816 359 VKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEM 434 (877)
Q Consensus 359 l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l~~ 434 (877)
+..++..+..-+.........++.++..+...+.... +....+...+.+...++.++...+..+..+++.+..
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~---e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKL---EEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554445555555555555444333 333333333344444444444444444444444443
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6e-12 Score=118.34 Aligned_cols=54 Identities=33% Similarity=0.747 Sum_probs=48.7
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
..+|++|++...+|..+||||+||++||..|...+. .||.||..|.+.+|..++
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcceeeec
Confidence 479999999999999999999999999999998644 599999999999887654
No 31
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.20 E-value=6.5e-12 Score=84.03 Aligned_cols=39 Identities=36% Similarity=0.901 Sum_probs=31.5
Q ss_pred ccccccccccccccccchhhhHHhHHHHhccCC---CCCCCC
Q 002816 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRH---RKCPGC 863 (877)
Q Consensus 825 C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~---~~Cp~c 863 (877)
|+||.+.|.+||+++|||+||..|+..++.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998653 469988
No 32
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.5e-12 Score=115.06 Aligned_cols=56 Identities=41% Similarity=0.937 Sum_probs=51.6
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccC--CCCCCCCCCCCCCCCCcccC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~~~~~~~~ 876 (877)
..+.|.||.+.-++||++.|||.||+.|+..|+..+ ...||+|...++...|.++|
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 358999999999999999999999999999999865 45789999999999999998
No 33
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.18 E-value=9.7e-12 Score=94.38 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=48.8
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+.|+||++.+.+|++++|||+||..|+..|+.. ...||.|+.+++..++.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCH
Confidence 789999999999999999999999999999985 66899999999988887764
No 34
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.17 E-value=1.8e-05 Score=84.93 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=18.4
Q ss_pred chhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 841 YHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 841 ~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
-|.-|..|+..-......+-|.|+.+-
T Consensus 632 e~~elvtyL~sqi~~kqtkqpklgrrs 658 (1265)
T KOG0976|consen 632 EHPELVTYLPSQIDAKQTKQPKLGRRS 658 (1265)
T ss_pred ccHHHHhhchhhhchhcccCCccCChH
Confidence 355677777766666666788887653
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.16 E-value=5.1e-12 Score=119.91 Aligned_cols=57 Identities=32% Similarity=0.783 Sum_probs=51.1
Q ss_pred cCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 820 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
...++|.||++.|.-|+++||||+||.-||..++.. ...||.|..+|...+++.++|
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhH
Confidence 334899999999999999999999999999999985 456999999999999988764
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-11 Score=114.53 Aligned_cols=58 Identities=24% Similarity=0.555 Sum_probs=49.3
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
..|...+.|-||...|+-|+.++|||+||.-||.+++.+ +..||.|+.+|...-++..
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~ 77 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGS 77 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccc
Confidence 345556899999999999999999999999999999995 5569999999876655544
No 37
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=2.4e-11 Score=124.30 Aligned_cols=60 Identities=28% Similarity=0.652 Sum_probs=52.9
Q ss_pred HHhccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 816 LREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 816 ~~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+..+...+.|+||+..|..|++++|||+||..|+..|+.. ...||.|+..+....++.+|
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccch
Confidence 4556777999999999999999999999999999999884 45799999999887887776
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.12 E-value=0.00013 Score=89.93 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002816 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSR 233 (877)
Q Consensus 202 ~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~ 233 (877)
...+..++..+...+..+...+..++.++...
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~ 385 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKL 385 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.09 E-value=2e-11 Score=86.18 Aligned_cols=55 Identities=35% Similarity=0.780 Sum_probs=30.4
Q ss_pred hccCcccccccccccccccc-cccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~-~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
.+...++|++|+..++.||. ..|.|+||..|+...+.+ .||+|+.|.-..|++-|
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhh
Confidence 45556999999999999985 589999999999887663 59999999998888754
No 40
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.06 E-value=5.4e-11 Score=79.16 Aligned_cols=38 Identities=45% Similarity=1.104 Sum_probs=33.4
Q ss_pred ccccccccccc-cccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 825 CSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 825 C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
|+||++.+.+| ++++|||+||..|+..++.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68899999999999999997 6789998
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=7.9e-05 Score=82.84 Aligned_cols=65 Identities=28% Similarity=0.318 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 365 KSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRL 436 (877)
Q Consensus 365 ~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l~~~l 436 (877)
....+.......+..++.+++.+...+..+.-.....+.+. .....+-..+..+...++.+..++
T Consensus 438 t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~-------q~~~~l~~~~~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 438 TASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALK-------QRRAKLHEDIGRLKDELDRLLARL 502 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444555556666666666665543333333333 333444444444555555554444
No 42
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.8e-11 Score=121.20 Aligned_cols=56 Identities=38% Similarity=0.861 Sum_probs=51.8
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccC----CCCCCCCCCCCCCCCCcccCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR----HRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~----~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
...||||+....-|+.+.|||+||..||-.++... ...||+|+..+..+||.++||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 68999999999999999999999999999998764 578999999999999999986
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=9.2e-05 Score=81.14 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002816 204 NLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRA 270 (877)
Q Consensus 204 ~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~~ 270 (877)
.++..+..+......+..+...+...+.........+...++.++..+..+......+...++....
T Consensus 59 ~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~ 125 (698)
T KOG0978|consen 59 KLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALE 125 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444444444445555554555555555555555555555544444444444433
No 44
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.01 E-value=8.1e-11 Score=90.95 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=45.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.|.|+||+..|.+||+++|||+||+.||..|+......||+|+.++...++.+++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 4899999999999999999999999999999997688999999999988887764
No 45
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.98 E-value=2e-10 Score=81.57 Aligned_cols=45 Identities=40% Similarity=1.070 Sum_probs=39.7
Q ss_pred ccccccccccccccccccchh-hhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
..|+||++.+.+++++||||. ||..|+..+.. ....||+||.++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 689999999999999999999 99999999988 5678999999874
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.95 E-value=0.00052 Score=84.33 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 741 SDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKV 796 (877)
Q Consensus 741 ~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l 796 (877)
.++...+.....+-..++..+.....++..+...+.........+...+...+..+
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W 1118 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGW 1118 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444433
No 47
>PHA02926 zinc finger-like protein; Provisional
Probab=98.92 E-value=8e-10 Score=99.79 Aligned_cols=59 Identities=25% Similarity=0.640 Sum_probs=44.3
Q ss_pred hccCccccccccccccc---------ccccccchhhhHHhHHHHhccC-----CCCCCCCCCCCCCCCCcccC
Q 002816 818 EYREILKCSICLERPKE---------VVITKCYHLFCNPCVQKVTESR-----HRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~---------~~~~~c~h~~c~~C~~~~~~~~-----~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.......|+||++.... ++..+|+|+||..|+..|...+ .+.||.||..|..-...++|
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 33456899999987522 3456999999999999999753 35699999999764444444
No 48
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=0.00027 Score=78.39 Aligned_cols=47 Identities=21% Similarity=0.132 Sum_probs=19.4
Q ss_pred HHHhHhhHHHHHHHHHHHhccCCChhh-HHHHHHHHHHHHHHHHHHHh
Q 002816 522 VQDLTDSNLELKLILDMYRRESTDSRD-VLAARDLEYKAWAHVHSLKS 568 (877)
Q Consensus 522 ~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~l~~ 568 (877)
+.....++.+|+..++.+.....+... +..+....+.++.+......
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~ 720 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKR 720 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444444444444433333332 44444444444444443333
No 49
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.89 E-value=6.3e-10 Score=75.49 Aligned_cols=39 Identities=46% Similarity=0.959 Sum_probs=36.0
Q ss_pred cccccccccccc-ccccchhhhHHhHHHHhc-cCCCCCCCC
Q 002816 825 CSICLERPKEVV-ITKCYHLFCNPCVQKVTE-SRHRKCPGC 863 (877)
Q Consensus 825 C~~C~~~~~~~~-~~~c~h~~c~~C~~~~~~-~~~~~Cp~c 863 (877)
|+||.+.+..++ +++|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 557789998
No 50
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.89 E-value=3.6e-10 Score=75.19 Aligned_cols=36 Identities=39% Similarity=0.956 Sum_probs=22.9
Q ss_pred cccccccccc----ccccccchhhhHHhHHHHhccC---CCCCC
Q 002816 825 CSICLERPKE----VVITKCYHLFCNPCVQKVTESR---HRKCP 861 (877)
Q Consensus 825 C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~---~~~Cp 861 (877)
|+||.+ |.+ |++++|||+||..|+..+.... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 887 8999999999999999999843 45787
No 51
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.89 E-value=0.00031 Score=77.92 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002816 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (877)
Q Consensus 589 ~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 668 (877)
+...+......+..++.........+..|...+.....++......-......+..+...+..+..+.............
T Consensus 314 L~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~ 393 (522)
T PF05701_consen 314 LRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKE 393 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333333333333334444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002816 669 EGVRARQLQDALLMDKHMMESEIQQANASLN 699 (877)
Q Consensus 669 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~ 699 (877)
+...+...+......+...+..+......+.
T Consensus 394 E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 394 EVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333333
No 52
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.88 E-value=1.1e-09 Score=74.89 Aligned_cols=41 Identities=37% Similarity=0.975 Sum_probs=35.0
Q ss_pred cccccccccc---cccccccchhhhHHhHHHHhccCCCCCCCCCC
Q 002816 824 KCSICLERPK---EVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 865 (877)
Q Consensus 824 ~C~~C~~~~~---~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~ 865 (877)
.|++|+..|. .+++++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 4999999992 47788999999999999988 35678999974
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.88 E-value=7.3e-06 Score=80.69 Aligned_cols=199 Identities=17% Similarity=0.245 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002816 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 670 (877)
Q Consensus 591 ~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 670 (877)
..+..++.++..|...+..+...+......+......+..+..........+..++.........+..++..+.......
T Consensus 29 ~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ 108 (237)
T PF00261_consen 29 KRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRA 108 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544444444444444444444444444444444445555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002816 671 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQV 750 (877)
Q Consensus 671 ~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l 750 (877)
..+...+..+...+..++..+......+..+...+..++..+......+..++.....+....+.+..++..+...+...
T Consensus 109 ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 109 EEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555554444444444444444444555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 751 RGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDL 789 (877)
Q Consensus 751 ~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el 789 (877)
.......+..+..+...+..++..+.........+..++
T Consensus 189 E~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 189 ENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443444433333
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.87 E-value=0.00045 Score=78.53 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=13.0
Q ss_pred HHHHhhHhHHHHHHHHHhhhcc
Q 002816 83 KVVNKSWEELITDLESCSMRAR 104 (877)
Q Consensus 83 ~~~~~~~~~l~~~l~~l~~~~~ 104 (877)
....+.|..-.+++..+...++
T Consensus 151 ~~~grvVStKk~dl~~vv~~f~ 172 (1074)
T KOG0250|consen 151 SANGRVVSTKKEDLDTVVDHFN 172 (1074)
T ss_pred hccCccccccHHHHHHHHHHhC
Confidence 3445556666677776665553
No 55
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.87 E-value=3.6e-10 Score=77.76 Aligned_cols=40 Identities=35% Similarity=0.853 Sum_probs=33.9
Q ss_pred cccccccccc---cccccccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 824 KCSICLERPK---EVVITKCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 824 ~C~~C~~~~~---~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.|+||++.|. .++.++|||+||..|+..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 6999999884 3567899999999999999996 56899996
No 56
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.84 E-value=0.00047 Score=76.51 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002816 418 LGIEIQKQIDEKNRIEM 434 (877)
Q Consensus 418 le~~l~~~~~~~~~l~~ 434 (877)
+...+......+..|..
T Consensus 216 ~~~~leeae~~l~~L~~ 232 (522)
T PF05701_consen 216 WEKELEEAEEELEELKE 232 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.84 E-value=0.00056 Score=77.21 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=4.5
Q ss_pred hHHHHHHHHHh
Q 002816 447 EIIAEFRALVS 457 (877)
Q Consensus 447 ~~~~el~~~~~ 457 (877)
.....+...+.
T Consensus 165 ~a~~~le~~l~ 175 (569)
T PRK04778 165 PALDELEKQLE 175 (569)
T ss_pred chHHHHHHHHH
Confidence 44444444433
No 58
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.83 E-value=1.5e-09 Score=103.22 Aligned_cols=48 Identities=27% Similarity=0.825 Sum_probs=40.1
Q ss_pred Ccccccccccccccc--------cccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEV--------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~--------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
....|+||++.+.++ +.++|||+||..|+..|+. ....||+||.+|..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 457999999987642 4568999999999999998 46689999999864
No 59
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.3e-10 Score=74.93 Aligned_cols=52 Identities=35% Similarity=0.798 Sum_probs=44.4
Q ss_pred ccccccccccccccccccchhh-hHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 823 LKCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~-c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
-.|.||.+...+.|...|||+. |+.|--+.++...-.||+||.++ .||.+.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi--~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI--KDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH--HHHHHhh
Confidence 4799999999999999999998 99999998886678999999988 3444433
No 60
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.6e-09 Score=100.80 Aligned_cols=51 Identities=39% Similarity=0.756 Sum_probs=45.0
Q ss_pred cccccccccccccccccccchhhhHHhHHH-HhccCCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQK-VTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~-~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
.++|++|++.+..|..++|||+||..|+.. |...+.-+||.||.....++|
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 478999999999999999999999999999 666556679999998887776
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.80 E-value=0.00074 Score=76.21 Aligned_cols=9 Identities=0% Similarity=0.376 Sum_probs=4.2
Q ss_pred chHHHHHHH
Q 002816 807 SIIEELQQE 815 (877)
Q Consensus 807 ~~~~~l~~~ 815 (877)
|..+.+...
T Consensus 552 G~~~ri~~~ 560 (569)
T PRK04778 552 GVTKRIEDS 560 (569)
T ss_pred cHHHHHHHH
Confidence 445555444
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.79 E-value=0.00085 Score=76.39 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=10.0
Q ss_pred hhhHHhHHHHhccCCCCCCC
Q 002816 843 LFCNPCVQKVTESRHRKCPG 862 (877)
Q Consensus 843 ~~c~~C~~~~~~~~~~~Cp~ 862 (877)
+|-.-|+--.+- .+..||+
T Consensus 996 SFsTv~lllsLW-~~me~Pf 1014 (1074)
T KOG0250|consen 996 SFSTVCLLLSLW-EVMECPF 1014 (1074)
T ss_pred hHHHHHHHHHHh-HhhcCch
Confidence 455666544333 2345775
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.78 E-value=8e-06 Score=77.54 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=19.6
Q ss_pred cccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.|+.|+-.+. -+|. .|+.. .....+||.|+..+-
T Consensus 199 ~C~GC~m~l~------~~~~---~~V~~--~d~iv~CP~CgRILy 232 (239)
T COG1579 199 VCGGCHMKLP------SQTL---SKVRK--KDEIVFCPYCGRILY 232 (239)
T ss_pred cccCCeeeec------HHHH---HHHhc--CCCCccCCccchHHH
Confidence 5666654432 2333 34433 335678999987653
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.77 E-value=0.00081 Score=75.05 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 002816 636 ETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQD 678 (877)
Q Consensus 636 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 678 (877)
..|...++.++..+..+.....++++....+..+..++.....
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 65
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.73 E-value=6.4e-09 Score=72.93 Aligned_cols=44 Identities=39% Similarity=0.914 Sum_probs=37.2
Q ss_pred cccccccccccccccc-cchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 824 KCSICLERPKEVVITK-CYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~~-c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
.|+||+..+..++.++ |||.||..|+..|+......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999997666554 9999999999999986567899998764
No 66
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.70 E-value=5.3e-05 Score=74.67 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002816 632 LSEIETIGQSYDDMQTQN 649 (877)
Q Consensus 632 ~~e~~~l~~~~~~~~~~~ 649 (877)
...+..+....+......
T Consensus 63 ~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 63 TEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 67
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.69 E-value=0.001 Score=71.99 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002816 209 VKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (877)
Q Consensus 209 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~ 268 (877)
...++.++...+.++..++.....++.+...++..+..++..+.+.+.+++.....+..+
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l 153 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL 153 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444444455555555554555555555555555555555555555444443
No 68
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.69 E-value=0.00093 Score=71.50 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 753 SLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 753 ~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~ 800 (877)
++.+...++..++..+.-...+-+.+..+...+...+..|+.++..+.
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444455555666666666666666553
No 69
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.69 E-value=1.1e-08 Score=69.10 Aligned_cols=39 Identities=44% Similarity=1.014 Sum_probs=35.4
Q ss_pred ccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 825 C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
|+||++....++.++|||.||..|+..|+......||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999988899999999999999999988556779988
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.68 E-value=0.0013 Score=72.39 Aligned_cols=115 Identities=12% Similarity=0.192 Sum_probs=66.0
Q ss_pred hhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhh--HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHhh
Q 002816 506 ASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRD--VLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAI 583 (877)
Q Consensus 506 ~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~ 583 (877)
.+...++.++..++.+++.+..+++-|+..+..-++....... +.+++..-.++..-+-+++.-.....
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek--------- 395 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEK--------- 395 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHH---------
Confidence 3555667777777777777777777777777665554433332 55555555555555555544221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002816 584 EAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIE 629 (877)
Q Consensus 584 ~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 629 (877)
.....+.+.+.....++.+|....+.+..++..++..|..++..++
T Consensus 396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122444555556666666666666666666666666665555554
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.66 E-value=0.0012 Score=70.77 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002816 760 KVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQT 803 (877)
Q Consensus 760 ~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~ 803 (877)
.+......+.++...+.-...+...+..+-..|...|..|....
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRL 454 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555566666666666666665443
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.64 E-value=0.0022 Score=72.50 Aligned_cols=11 Identities=27% Similarity=0.175 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 002816 782 KKRLEEDLEMG 792 (877)
Q Consensus 782 ~~~~~~el~~l 792 (877)
+..++.+++.+
T Consensus 1733 L~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1733 LAGLEKRVESV 1743 (1758)
T ss_pred hhhHHHHHHHH
Confidence 33333333333
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.63 E-value=0.0023 Score=72.32 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 769 MELQIELVKERFAKKRLEEDLEMGRRKVLR 798 (877)
Q Consensus 769 ~~~~~~l~~~~~~~~~~~~el~~l~~~l~~ 798 (877)
.+++..+..-+..+..+..++..|..++..
T Consensus 1713 ~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1713 KDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 333333333334444555555555555544
No 74
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.57 E-value=0.0031 Score=70.68 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHH
Q 002816 201 ASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKE 257 (877)
Q Consensus 201 ~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~e 257 (877)
....+..++..++..+..++.++.+....+..++..++.++.++..++.++.+...+
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666655556666655555556666555555554444
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.56 E-value=0.00043 Score=73.96 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhccCc
Q 002816 781 AKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREI 822 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 822 (877)
.+.++.+++..+-..+..|- +.-..|+.+|..|+..
T Consensus 350 ~i~~mReec~~l~~Elq~Ll------D~ki~Ld~EI~~YRkL 385 (546)
T KOG0977|consen 350 EIAKMREECQQLSVELQKLL------DTKISLDAEIAAYRKL 385 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhh------chHhHHHhHHHHHHHH
Confidence 34444444444444444432 3445677777777653
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.55 E-value=0.0035 Score=70.44 Aligned_cols=11 Identities=9% Similarity=0.032 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 002816 363 LEKSKSEVFKY 373 (877)
Q Consensus 363 l~~~~~~l~~~ 373 (877)
+..|+.....+
T Consensus 62 fe~w~~~w~~i 72 (560)
T PF06160_consen 62 FEEWRQKWDEI 72 (560)
T ss_pred HHHHHHHHHHH
Confidence 33344433333
No 77
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.5e-08 Score=98.23 Aligned_cols=55 Identities=31% Similarity=0.706 Sum_probs=46.8
Q ss_pred HHhccCccccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 816 LREYREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 816 ~~~l~~~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
+..+...+.|+||...++.++++ .|+|.||+.||...++.....||+||+.+...
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 34445558999999999988766 69999999999999998899999999988653
No 78
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.48 E-value=9.5e-07 Score=102.68 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 002816 781 AKKRLEEDLEMGRRKVLRLQAQTE 804 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l~~~~~ 804 (877)
.+..++.++..+..++.+|..+..
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777766653
No 79
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.45 E-value=6.2e-08 Score=84.91 Aligned_cols=45 Identities=27% Similarity=0.656 Sum_probs=40.2
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
.+.|.||...|..||++.|||.||..|.-+.+. ....|-+|++..
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhh
Confidence 369999999999999999999999999998877 466799998765
No 80
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9.5e-08 Score=90.64 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=44.6
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
-.|+||+....-|+.+.|+|.||+.||+..+....+.||+||.+|...
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 579999999999999999999999999999998888999999999754
No 81
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.38 E-value=0.005 Score=64.38 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 363 LEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (877)
Q Consensus 363 l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 395 (877)
+..+...+..+-..+..|+.....|...+..+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334444444444444444444444554444443
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.36 E-value=0.0057 Score=63.93 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 750 VRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVL 797 (877)
Q Consensus 750 l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~ 797 (877)
+...+..++.++..+...+.....++..+-..+-.+..+|..+++-++
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 344444444444555544444444444444444555666666655443
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.35 E-value=0.0072 Score=64.95 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 750 VRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVL 797 (877)
Q Consensus 750 l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~ 797 (877)
....+...+..+..+..++..+..+++.+-...-.|..+|..+++-+.
T Consensus 340 ~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 340 FEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 334445555556666666666655655555555566666666666554
No 84
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.35 E-value=0.0075 Score=64.92 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhh
Q 002816 557 YKAWAHVHSLKSSL 570 (877)
Q Consensus 557 ~~~~~~~~~l~~~l 570 (877)
.....++..++..+
T Consensus 467 q~yskQVeeLKtEL 480 (786)
T PF05483_consen 467 QHYSKQVEELKTEL 480 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 85
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.7e-07 Score=87.42 Aligned_cols=46 Identities=24% Similarity=0.578 Sum_probs=39.4
Q ss_pred Cccccccccccc-cc------------ccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 821 EILKCSICLERP-KE------------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 821 ~~l~C~~C~~~~-~~------------~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
....|.||++.+ .. |..+||||+|-..|++.|.. |+..||+||.|+
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCcc
Confidence 457999999874 22 47889999999999999999 778899999994
No 86
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.24 E-value=9.5e-06 Score=94.47 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhh-HHHHHHHHHHHHHHHHHHHhhhhHhhHH
Q 002816 507 SSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRD-VLAARDLEYKAWAHVHSLKSSLDEQSLE 576 (877)
Q Consensus 507 ~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~l~~~l~~~~~e 576 (877)
+++....++..+...+..+..+...+...+..+......... +..+.....-+..+++.++..|..+..+
T Consensus 358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333334444444444433333333333333332222222 4445555555556666666666554443
No 87
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.19 E-value=0.0034 Score=71.20 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 002816 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEG 805 (877)
Q Consensus 733 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~ 805 (877)
.+.+-..+..++.+-..|+..+..-..---+|-..+.+...+++-....+..-+.+|..|+.+|.++.++.+.
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3344444444555555555555555555556666777777888877888888899999999999999999875
No 88
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=1.3e-06 Score=85.78 Aligned_cols=38 Identities=24% Similarity=0.628 Sum_probs=33.1
Q ss_pred ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 839 KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 839 ~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+|||.||..|+..++..+...||.|+.++....+++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~ 62 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQL 62 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccc
Confidence 79999999999998876677899999999988876654
No 89
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.16 E-value=0.037 Score=65.39 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002816 630 AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLN 699 (877)
Q Consensus 630 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~ 699 (877)
.+..++..+...+..+..++.... +....++...|...+..+......+.++...++.++..+..++.
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444443322 34444555555555555555555566666666666665555554
No 90
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.16 E-value=8.3e-07 Score=68.36 Aligned_cols=40 Identities=30% Similarity=0.732 Sum_probs=31.5
Q ss_pred ccccccccccc------------c-cccccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 824 KCSICLERPKE------------V-VITKCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 824 ~C~~C~~~~~~------------~-~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.|+||+..+.+ + +..+|||.|...||..|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 59999998833 2 23479999999999999984 55899997
No 91
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1e-06 Score=82.58 Aligned_cols=47 Identities=26% Similarity=0.622 Sum_probs=39.8
Q ss_pred ccccccccccccccccc-ccchhhhHHhHHHHhccC-CCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESR-HRKCPGCAASFS 868 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~ 868 (877)
...|++|++..+.|.+. +|||+||+.|+.+..... ...||.|+.+..
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 46899999999988766 599999999999877643 468999998875
No 92
>PRK11637 AmiB activator; Provisional
Probab=98.10 E-value=0.0074 Score=65.90 Aligned_cols=6 Identities=0% Similarity=-0.214 Sum_probs=2.9
Q ss_pred cccccc
Q 002816 822 ILKCSI 827 (877)
Q Consensus 822 ~l~C~~ 827 (877)
.|.+|+
T Consensus 306 ~~~~Pv 311 (428)
T PRK11637 306 QAFWPV 311 (428)
T ss_pred CCccCC
Confidence 445554
No 93
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.08 E-value=0.037 Score=62.31 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002816 362 QLEKSKSEVFKYQALFEKLQVEK 384 (877)
Q Consensus 362 ~l~~~~~~l~~~~~~~~~l~~~~ 384 (877)
.+..+...+..+...+..+...+
T Consensus 102 ~i~~~~~~l~~~e~~i~~i~~~l 124 (560)
T PF06160_consen 102 AIKEIEEQLDEIEEDIKEILDEL 124 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 94
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.7e-06 Score=81.94 Aligned_cols=49 Identities=29% Similarity=0.636 Sum_probs=41.2
Q ss_pred Cccccccccccccc---ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKE---VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 821 ~~l~C~~C~~~~~~---~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
.-..|.||+..|.. .+.+||.|.|-..|+..|+..-...||+||+++.+
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34789999998853 46789999999999999998556689999998864
No 95
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.7e-06 Score=93.87 Aligned_cols=47 Identities=38% Similarity=0.782 Sum_probs=41.7
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCC
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 865 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~ 865 (877)
.+...+.|+||.+.|..|++++|||.||..|+..++. ....||.|+.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 3445699999999999999999999999999999987 5678999994
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.04 E-value=0.042 Score=61.58 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 002816 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRF 714 (877)
Q Consensus 635 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~ 714 (877)
+..-+..+...-.++..+..++.++++.+..+..+...+...+..-..-...+...+..+...+..+...+......+..
T Consensus 148 lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~ 227 (617)
T PF15070_consen 148 LQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQS 227 (617)
T ss_pred hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33333344445566677777888888888777777777766666666666666666666666666666666665555666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002816 715 CLDQAQRLAEDRSQNSANLENTQKRLSDVRKS 746 (877)
Q Consensus 715 ~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~ 746 (877)
+..+...+...+..+......+......+..+
T Consensus 228 Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 228 LQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555555554444444444444444
No 97
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.2e-06 Score=83.26 Aligned_cols=45 Identities=36% Similarity=0.696 Sum_probs=39.9
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
+.|.||...|..||++.|||.||..|.-..+. +...|++|+..+-
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc-cCCcceecccccc
Confidence 57999999999999999999999999988877 4567999987663
No 98
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=98.03 E-value=1.9e-06 Score=59.17 Aligned_cols=48 Identities=27% Similarity=0.571 Sum_probs=39.6
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
...|-.|...-+..++++|||+.|..|.... +...||+|+.+|...++
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCCC
Confidence 3578888888788889999999999998764 44689999999987664
No 99
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.051 Score=62.12 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHH
Q 002816 785 LEEDLEMGRRKVLRL 799 (877)
Q Consensus 785 ~~~el~~l~~~l~~l 799 (877)
++..+......+..+
T Consensus 934 L~~kl~e~~~~l~~~ 948 (1141)
T KOG0018|consen 934 LQQKLEEKQSVLNRI 948 (1141)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666666
No 100
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.02 E-value=0.01 Score=53.77 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 680 LLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQS 759 (877)
Q Consensus 680 ~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 759 (877)
+..++..+..-...++.....+......++.....+...+..+..+...+....+.+..+..++......+..++-.++.
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333334333333333333444444444444444444444444444444444444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002816 760 KVYKSRLTLMELQIELV 776 (877)
Q Consensus 760 ~~~~l~~~l~~~~~~l~ 776 (877)
-+......+.+....+.
T Consensus 145 l~~~~da~l~e~t~~i~ 161 (193)
T PF14662_consen 145 LICQRDAILSERTQQIE 161 (193)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 33333333333333333
No 101
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.00 E-value=2.3e-06 Score=84.00 Aligned_cols=48 Identities=33% Similarity=0.784 Sum_probs=42.5
Q ss_pred cccccccccccccccccchhhhHHhHHHHhccC-CCCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKEVVITKCYHLFCNPCVQKVTESR-HRKCPGCAASFSPND 871 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~~~~ 871 (877)
.|.||-+.-++..+-+|||..|..|+..|..+. ...||+||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 699999999999999999999999999998765 678999998876543
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.97 E-value=0.042 Score=59.12 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Q 002816 745 KSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERF---AKKRLEEDLEMGRRKVLRLQAQ 802 (877)
Q Consensus 745 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~---~~~~~~~el~~l~~~l~~l~~~ 802 (877)
-++..+.-.+..++..-..+-..+..+..+.+.++. .+..+...++.|+.++..+-..
T Consensus 866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lqm 926 (961)
T KOG4673|consen 866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQM 926 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554443 2334455566666655554433
No 103
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.5e-06 Score=93.97 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=41.3
Q ss_pred ccccccccccccc-----ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-----VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~-----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
...|+||.+.+.. +..++|||+||..|+..|++ +...||+||..+..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYD 342 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhhhc
Confidence 4699999999987 78999999999999999999 57789999985543
No 104
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.92 E-value=0.013 Score=67.38 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhhhH
Q 002816 553 RDLEYKAWAHVHSLKSSLDE 572 (877)
Q Consensus 553 ~~~~~~~~~~~~~l~~~l~~ 572 (877)
......++.++..+...+..
T Consensus 173 k~~~~e~~~~i~~l~~~i~~ 192 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDH 192 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555443
No 105
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.91 E-value=0.15 Score=63.53 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=21.2
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhcc
Q 002816 501 CETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRE 542 (877)
Q Consensus 501 ~~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~ 542 (877)
+..+...+......+..+..........+..++..+..+...
T Consensus 839 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 880 (1486)
T PRK04863 839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRL 880 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555555555555555544443
No 106
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.91 E-value=0.017 Score=66.22 Aligned_cols=23 Identities=0% Similarity=-0.000 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002816 549 VLAARDLEYKAWAHVHSLKSSLD 571 (877)
Q Consensus 549 ~~~l~~~~~~~~~~~~~l~~~l~ 571 (877)
+..+...+..+..++..+...+.
T Consensus 176 ~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 176 IRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655554
No 107
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.91 E-value=3.6e-06 Score=60.50 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=30.3
Q ss_pred Ccccccccccccccccc-cccchhhhHHhHHHHhc-cCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTE-SRHRKCPGC 863 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~-~~c~h~~c~~C~~~~~~-~~~~~Cp~c 863 (877)
-.+.|||....|.+||. ..|||+|....|..++. .....||+.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 34899999999999986 59999999999999993 345689993
No 108
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.3e-06 Score=85.17 Aligned_cols=49 Identities=27% Similarity=0.705 Sum_probs=43.6
Q ss_pred cCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 820 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
...+.|.||...+-.|++++|||.||..|+.+.+. ....||.|+.+|..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 56699999999999999999999999999999777 56679999998864
No 109
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.1e-06 Score=82.11 Aligned_cols=46 Identities=28% Similarity=0.612 Sum_probs=39.2
Q ss_pred cccccccccccc---ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE---VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~---~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
..|.||.+.|.. ..++||+|.|-..||+.|+......||+|.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 599999999975 4578999999999999999966556999987654
No 110
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.84 E-value=7.7e-06 Score=81.63 Aligned_cols=55 Identities=20% Similarity=0.545 Sum_probs=44.9
Q ss_pred ccCccccccccccccc----ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 819 YREILKCSICLERPKE----VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
....|.|||++..|.. .++.+|||+||..|+...- ....||.|+.+|...||.++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~L 168 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPL 168 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEe
Confidence 3556899999999865 2345999999999999974 24569999999999998765
No 111
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.84 E-value=8.1e-06 Score=76.91 Aligned_cols=43 Identities=33% Similarity=0.770 Sum_probs=39.1
Q ss_pred cccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAA 865 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~ 865 (877)
|.|+.|+-.+.+|+.+ -|||.||..||...+-...+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8999999999999988 589999999999888767889999976
No 112
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.9e-06 Score=81.11 Aligned_cols=47 Identities=28% Similarity=0.752 Sum_probs=40.8
Q ss_pred cccccccccccccccccccchhh-hHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~-c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
--.|-||+...++++++||.|+. |..|.+...- ....||+||.+|..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 46899999999999999999998 9999998653 35579999999853
No 113
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.9e-06 Score=81.35 Aligned_cols=60 Identities=18% Similarity=0.516 Sum_probs=52.8
Q ss_pred hccCcccccccccccc---cccccccchhhhHHhHHHHhccCC--CCCCCCCCCCCCCCCcccCC
Q 002816 818 EYREILKCSICLERPK---EVVITKCYHLFCNPCVQKVTESRH--RKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~---~~~~~~c~h~~c~~C~~~~~~~~~--~~Cp~c~~~~~~~~~~~~~~ 877 (877)
++-..+.|||-.+.-+ .|+.+.|||+.|..-+.+..+++. .+||+|.......+.+++||
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 5667789999877554 488999999999999999998776 89999999999999999997
No 114
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.81 E-value=0.043 Score=62.52 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 002816 508 SADQVAEIHKLQAMVQDLTDSNLELKLILDMYR 540 (877)
Q Consensus 508 i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~ 540 (877)
+.+++.++..|+.++........+|...+..+.
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~ 452 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLT 452 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 335666666666666666666666665554333
No 115
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.81 E-value=9.3e-06 Score=79.01 Aligned_cols=53 Identities=28% Similarity=0.700 Sum_probs=43.6
Q ss_pred hccCccccccccccccccc-ccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 818 EYREILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~-~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
.+.....|.+|.-.|.++. +.-|.|+||.+||-.++.. ...||+|...+....
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 3445579999999888865 5589999999999999995 778999988776553
No 116
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.77 E-value=1.8e-05 Score=60.81 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=36.2
Q ss_pred ccccccccccccc------------cc-ccccchhhhHHhHHHHhccC--CCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE------------VV-ITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~------------~~-~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~ 869 (877)
.-.|+||...|.. |+ .-.|+|.|-..||..|+.+. ...||+||.+|..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3467777666642 32 33799999999999999963 4689999998854
No 117
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.8e-06 Score=81.21 Aligned_cols=40 Identities=30% Similarity=0.947 Sum_probs=35.7
Q ss_pred ccccccccccccccccccchhh-hHHhHHHHhccCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~-c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
..|.||++...+.++++|||+. |..|-+++ ..||+||..+
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi 341 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYI 341 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHH
Confidence 5899999999999999999999 99998764 3699999766
No 118
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.73 E-value=0.13 Score=57.41 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 002816 658 ERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA 706 (877)
Q Consensus 658 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~ 706 (877)
.+..+|.++...+.+-+..+..+..+...++.++..+...+.....-.+
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~d 536 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTD 536 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455555555555555555555555555555555555555554444333
No 119
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.73 E-value=6.9e-06 Score=87.90 Aligned_cols=52 Identities=23% Similarity=0.501 Sum_probs=41.3
Q ss_pred ccccccccccccc---ccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 824 KCSICLERPKEVV---ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 824 ~C~~C~~~~~~~~---~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.|++|...|.+.. -.+|+|.||..|+..|.+. ...||+|+..|..-+|...|
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~eS~ 179 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVLEST 179 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeeeccc
Confidence 6888887776643 2489999999999999884 56799999999887765443
No 120
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.71 E-value=0.034 Score=50.21 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002816 687 MESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAE 724 (877)
Q Consensus 687 l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~ 724 (877)
++.++.............+..+...+..+...+..+..
T Consensus 93 iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 93 IEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSA 130 (205)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 33333333333333333333333333333333333333
No 121
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.69 E-value=0.039 Score=50.16 Aligned_cols=10 Identities=10% Similarity=-0.360 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002816 662 YNIKLVLEGV 671 (877)
Q Consensus 662 ~~~~l~~~~~ 671 (877)
++.+++....
T Consensus 68 EledLk~~~~ 77 (193)
T PF14662_consen 68 ELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 122
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.19 Score=57.78 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 624 KNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKH 685 (877)
Q Consensus 624 ~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~ 685 (877)
++..+.-+..++..+...+...+.++......+....-++..+...+...+..++.+...+.
T Consensus 688 le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n 749 (1141)
T KOG0018|consen 688 LEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMN 749 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333
No 123
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=2.1e-05 Score=72.19 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=45.3
Q ss_pred Cccccccccccccccc----ccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 821 EILKCSICLERPKEVV----ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
..+.||+|.+.+++.+ .-+|||+||..|+...++ ....||+|+.++...||..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence 4589999999998743 349999999999999988 45579999999999988653
No 124
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.65 E-value=0.14 Score=55.34 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=12.0
Q ss_pred hHHhHhhchhHHHHHHHHHHHHHHHHHH
Q 002816 152 MEEDRETGIPRTKNIVSNILAAVDNLWH 179 (877)
Q Consensus 152 l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 179 (877)
+......++..+...+...+...+.++.
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~ 430 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRR 430 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444444444444433
No 125
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.64 E-value=2.6e-05 Score=79.77 Aligned_cols=51 Identities=25% Similarity=0.705 Sum_probs=43.5
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhcc----CCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTES----RHRKCPGCAASFSPND 871 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~----~~~~Cp~c~~~~~~~~ 871 (877)
....|.+|+++-.+++...|-|.||.-|++.+... ....||.|..+++..+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34799999999999999999999999999887763 3568999999887543
No 126
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.64 E-value=0.077 Score=52.22 Aligned_cols=34 Identities=9% Similarity=0.257 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002816 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNE 626 (877)
Q Consensus 593 l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 626 (877)
...+...+..+..+.+.+..++..+.....+...
T Consensus 50 vrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 50 VRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 127
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.59 E-value=0.048 Score=52.35 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=6.9
Q ss_pred cCccccccccc
Q 002816 820 REILKCSICLE 830 (877)
Q Consensus 820 ~~~l~C~~C~~ 830 (877)
.....||.|+-
T Consensus 219 d~iv~CP~CgR 229 (239)
T COG1579 219 DEIVFCPYCGR 229 (239)
T ss_pred CCCccCCccch
Confidence 34567777764
No 128
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.14 Score=56.77 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002816 778 ERFAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 778 ~~~~~~~~~~el~~l~~~l~~l~ 800 (877)
+........+.+..+++.++.|+
T Consensus 916 ~~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 916 LLVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhC
Confidence 33344455556666666666665
No 129
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.55 E-value=0.034 Score=49.41 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002816 779 RFAKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 779 ~~~~~~~~~el~~l~~~l~~l 799 (877)
...+..++.+...+..++..|
T Consensus 114 eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 114 ERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333333334444444444433
No 130
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.55 E-value=0.32 Score=56.87 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=6.7
Q ss_pred hhhHHhHHHHhc
Q 002816 843 LFCNPCVQKVTE 854 (877)
Q Consensus 843 ~~c~~C~~~~~~ 854 (877)
.+|..|...++.
T Consensus 916 ~~~k~~t~ac~~ 927 (1317)
T KOG0612|consen 916 LTCKDCTLACLE 927 (1317)
T ss_pred HHHHHHhHHHHH
Confidence 456666555554
No 131
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.54 E-value=0.12 Score=51.82 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=21.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 722 LAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (877)
Q Consensus 722 l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l 775 (877)
..+++.............+......+......+..-...+..-..++..++.+.
T Consensus 215 r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q 268 (499)
T COG4372 215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQ 268 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444443333333333443334444443333
No 132
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.16 Score=56.33 Aligned_cols=23 Identities=4% Similarity=-0.090 Sum_probs=11.2
Q ss_pred HHHHHHHhhccchhhHHHHHHhh
Q 002816 66 NKFAQLKERQQPYDSTLKVVNKS 88 (877)
Q Consensus 66 ~~~~~L~~~~~~~~~~~~~~~~~ 88 (877)
.-|.-|+.+....+.-...++.+
T Consensus 65 ~li~vL~~D~~D~E~ik~~LdTl 87 (970)
T KOG0946|consen 65 PLIQVLQRDYMDPEIIKYALDTL 87 (970)
T ss_pred HHHHHHhhccCCHHHHHHHHHHH
Confidence 44555665555544444444433
No 133
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.49 E-value=2.4e-05 Score=90.95 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ccccccchhhhHHhHHH
Q 002816 835 VVITKCYHLFCNPCVQK 851 (877)
Q Consensus 835 ~~~~~c~h~~c~~C~~~ 851 (877)
..+++-||-+.-.|...
T Consensus 657 kLi~sa~y~~g~~~~~~ 673 (713)
T PF05622_consen 657 KLIVSAWYNLGMRLHRE 673 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566555555543
No 134
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.47 E-value=0.32 Score=55.09 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHH
Q 002816 306 ESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQN 342 (877)
Q Consensus 306 ~~~l~~~~~~~~~~~~el~~l~~~~~~l~~e~~~l~~ 342 (877)
..++.+++..-...-.++.++..++..+.+.+..++.
T Consensus 82 r~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 82 REEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344455555555555555555443
No 135
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.46 E-value=5e-05 Score=80.36 Aligned_cols=52 Identities=33% Similarity=0.762 Sum_probs=45.0
Q ss_pred ccCcccccccccccccccc-cccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~-~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
+...+.|++|+.++.+|+. +.|||.||..|+..|... +..||.|+.......
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhh
Confidence 4556999999999999998 499999999999999986 778999987765544
No 136
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.26 Score=52.84 Aligned_cols=32 Identities=38% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 360 KNQLEKSKSEVFKYQALFEKLQVEKDNLAWRE 391 (877)
Q Consensus 360 ~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~ 391 (877)
...+..+..++.....+++.++.+.+.|...+
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554444
No 137
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.22 Score=51.96 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002816 745 KSSVQVRGSLEESQSKVYKSRL 766 (877)
Q Consensus 745 ~~~~~l~~~l~~~~~~~~~l~~ 766 (877)
..+......+..+...-..+..
T Consensus 217 ~~l~~~q~~l~eL~~~~~~L~~ 238 (420)
T COG4942 217 SELSADQKKLEELRANESRLKN 238 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333333333333333333
No 138
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.28 Score=52.62 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=36.1
Q ss_pred HhhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHhhhhHh
Q 002816 505 LASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQ 573 (877)
Q Consensus 505 ~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 573 (877)
.+.+..+..++.....+++.++.....|+..++.. .-...++..+..+...+...+..+..+++..
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q---~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ---GISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555422 2222335666666666666666666665543
No 139
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.39 E-value=4.9e-05 Score=69.44 Aligned_cols=48 Identities=29% Similarity=0.781 Sum_probs=37.5
Q ss_pred cccccccc-cccccc--cc--c-cchhhhHHhHHHHhccCCCCCC--CCCCCCCCC
Q 002816 823 LKCSICLE-RPKEVV--IT--K-CYHLFCNPCVQKVTESRHRKCP--GCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~-~~~~~~--~~--~-c~h~~c~~C~~~~~~~~~~~Cp--~c~~~~~~~ 870 (877)
-.||+|.. +|-+|- ++ | |.|.+|.+|+++.+..++..|| .|++.+...
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 48999975 454442 22 4 9999999999999998899999 888766543
No 140
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=3e-05 Score=74.89 Aligned_cols=54 Identities=19% Similarity=0.471 Sum_probs=44.6
Q ss_pred cccccccccccccccc-cccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 822 ILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~-~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.-.||+|.....+|.. ...|.+||+.|+..++. ....||+.+.|....++.++|
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHh
Confidence 3589999887766654 46799999999999998 466799999999887777665
No 141
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00012 Score=74.07 Aligned_cols=49 Identities=31% Similarity=0.704 Sum_probs=39.1
Q ss_pred Cccccccccccccccc-----c---cccchhhhHHhHHHHhccC------CCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVV-----I---TKCYHLFCNPCVQKVTESR------HRKCPGCAASFSP 869 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~-----~---~~c~h~~c~~C~~~~~~~~------~~~Cp~c~~~~~~ 869 (877)
....|.||++....++ . .+|-|.||..|+..|-... .+.||+||.+...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3579999999887655 2 4699999999999998543 3789999987643
No 142
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00014 Score=74.18 Aligned_cols=50 Identities=26% Similarity=0.669 Sum_probs=39.9
Q ss_pred cCccccccccccccc-----------------ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 820 REILKCSICLERPKE-----------------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~-----------------~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
+...-|+||+..+.- -+.+||.|+|-..|+..|..+..-.||.||.++.+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345789999886521 23459999999999999999766689999998864
No 143
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.32 E-value=0.19 Score=49.11 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002816 779 RFAKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 779 ~~~~~~~~~el~~l~~~l~~l 799 (877)
+...+.+-.+...|+.++-..
T Consensus 277 EErNKeL~ne~n~LkEr~~qy 297 (305)
T PF14915_consen 277 EERNKELINECNHLKERLYQY 297 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 334444555555555554443
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.29 E-value=7.4e-05 Score=75.55 Aligned_cols=47 Identities=32% Similarity=0.648 Sum_probs=38.2
Q ss_pred ccCccccccccccccccc----ccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVV----ITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
+...++||||.+++...+ .+.|+|+|-..|+..|.. ..||+||..-.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 345589999999997643 568999998899999977 47999987655
No 145
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=97.27 E-value=0.00094 Score=55.61 Aligned_cols=51 Identities=29% Similarity=0.628 Sum_probs=43.0
Q ss_pred Ccccccccccccccccccc----cchhhhHHhHHHHhccC--CCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITK----CYHLFCNPCVQKVTESR--HRKCPGCAASFSPND 871 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~----c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~~~ 871 (877)
..+.|.||.+...+..+++ ||...|..|.-..+... .+.||+|..+|....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4589999999998887774 99999999999988743 678999999997643
No 146
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.52 Score=51.97 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002816 632 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 666 (877)
Q Consensus 632 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 666 (877)
..+++.+...++-+-..+..+...+.+++..+..+
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333333333333333333333
No 147
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.53 Score=51.94 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002816 613 DMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKL 666 (877)
Q Consensus 613 ~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 666 (877)
++..|...+..+...+......+......++.+..+......++..+..+|.++
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~ 498 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKEL 498 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444333333333333333333
No 148
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00021 Score=69.47 Aligned_cols=46 Identities=24% Similarity=0.539 Sum_probs=39.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
...||||.....+.|+.||||.-|+.||..++-+.. .|=+|...+.
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k-~CFfCktTv~ 467 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCK-RCFFCKTTVI 467 (489)
T ss_pred cccCcceecccchhhccCCCCchHHHHHHHHHhcCC-eeeEecceee
Confidence 368999999999999999999999999999988544 4888876654
No 149
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.13 E-value=0.00036 Score=47.25 Aligned_cols=43 Identities=28% Similarity=0.773 Sum_probs=22.3
Q ss_pred cccccccccc--cccc--ccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 825 CSICLERPKE--VVIT--KCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 825 C~~C~~~~~~--~~~~--~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
||+|.+.+.. .-++ +||+.+|..|...........||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889887732 2344 68999999999998875567799999886
No 150
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.10 E-value=0.77 Score=51.79 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 002816 412 DSKIADLGIEIQKQIDEKNRIE 433 (877)
Q Consensus 412 ~~~~~~le~~l~~~~~~~~~l~ 433 (877)
+..+.+++..+..+.....+..
T Consensus 121 EerL~ELE~~le~~~e~~~D~~ 142 (617)
T PF15070_consen 121 EERLAELEEELERLQEQQEDRQ 142 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444433
No 151
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.67 Score=51.03 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002816 781 AKKRLEEDLEMGRRKVLRLQA 801 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l~~ 801 (877)
....++.++..++..+..+..
T Consensus 560 ~~e~LqaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 560 RLEELQAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555556666655555443
No 152
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00016 Score=71.82 Aligned_cols=44 Identities=30% Similarity=0.746 Sum_probs=34.0
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
....|.||.+.+.+.+.+||||+.| |..-... ...||.||..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 3468999999999999999999996 5443322 345999998764
No 153
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00079 Score=67.66 Aligned_cols=45 Identities=27% Similarity=0.728 Sum_probs=34.7
Q ss_pred Cccccccccccccc---ccccccchhhhHHhHHHHhccC-------CCCCCCCCC
Q 002816 821 EILKCSICLERPKE---VVITKCYHLFCNPCVQKVTESR-------HRKCPGCAA 865 (877)
Q Consensus 821 ~~l~C~~C~~~~~~---~~~~~c~h~~c~~C~~~~~~~~-------~~~Cp~c~~ 865 (877)
..+.|.||++.... .+.+||+|+||..|+..++... ...||.|..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34899999997765 3467999999999999998742 236877653
No 154
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.89 E-value=0.4 Score=45.17 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANA 696 (877)
Q Consensus 659 ~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 696 (877)
..+++..|...+.........+...+.....++.....
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~ 103 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKD 103 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 155
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=1.1 Score=49.49 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002816 781 AKKRLEEDLEMGRRKVLRLQAQT 803 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l~~~~ 803 (877)
++..++.++.....++.++..+.
T Consensus 601 ev~qlk~ev~s~ekr~~rlk~vF 623 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQRLKEVF 623 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666554
No 156
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.83 E-value=0.73 Score=47.27 Aligned_cols=58 Identities=7% Similarity=0.090 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002816 643 DDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNF 700 (877)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~ 700 (877)
..+...-..+..++.-+.+.+..+..-+.+...-+..+..++..+...+..+..+...
T Consensus 205 ~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~ 262 (309)
T PF09728_consen 205 QTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQT 262 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444444444433333333
No 157
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.80 E-value=1.1 Score=48.83 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDA----LKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQ 654 (877)
Q Consensus 588 ~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~----l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~ 654 (877)
..+.++..++..+..|+..+.....++..+... ......++..+..+++..+..+..++..+..+..
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555544444444444433333 3333333333444444444444444444444333
No 158
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.78 E-value=0.00059 Score=65.48 Aligned_cols=59 Identities=17% Similarity=0.394 Sum_probs=48.9
Q ss_pred ccCcccccccccccc---cccccccchhhhHHhHHHHhccC--CCCCCCCCCCCCCCCCcccCC
Q 002816 819 YREILKCSICLERPK---EVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 819 l~~~l~C~~C~~~~~---~~~~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
+-..+.||+-.+.-+ .|+++.|||+.-..-+....+++ .++||+|...-...++.++||
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 445689999877554 48999999999999998887765 568999999999999998886
No 159
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00036 Score=65.35 Aligned_cols=50 Identities=18% Similarity=0.490 Sum_probs=38.6
Q ss_pred ccccccccccccc----------cccccchhhhHHhHHHHhcc-CCCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEV----------VITKCYHLFCNPCVQKVTES-RHRKCPGCAASFSPNDV 872 (877)
Q Consensus 823 l~C~~C~~~~~~~----------~~~~c~h~~c~~C~~~~~~~-~~~~Cp~c~~~~~~~~~ 872 (877)
..|.||+..+... ..+.|+|+|-..||..|--- ...+||.|...+.....
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 5899999877543 35789999999999998653 35689999877654443
No 160
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.65 E-value=0.77 Score=45.09 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002816 661 DYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASL 698 (877)
Q Consensus 661 ~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l 698 (877)
..+.........++..+..++.+.--|..++..+....
T Consensus 207 ~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 207 DKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333
No 161
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00074 Score=71.36 Aligned_cols=37 Identities=41% Similarity=0.828 Sum_probs=31.6
Q ss_pred cccccccccccc----cccccccchhhhHHhHHHHhccCCCCCC
Q 002816 822 ILKCSICLERPK----EVVITKCYHLFCNPCVQKVTESRHRKCP 861 (877)
Q Consensus 822 ~l~C~~C~~~~~----~~~~~~c~h~~c~~C~~~~~~~~~~~Cp 861 (877)
.+.|+||...|. .||.+.|||+.|..|+...+. +.||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 478999977764 489999999999999998776 5788
No 162
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.57 E-value=1 Score=45.58 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 754 LEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLE 790 (877)
Q Consensus 754 l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~ 790 (877)
++.+=.+.+-+..++..++.+..-+...+.+|..-++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666666555566666666555
No 163
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.56 E-value=0.0009 Score=75.32 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=40.4
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccC-CCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESR-HRKCPGCAASFSPND 871 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~~~~ 871 (877)
+.|++|.+ ...+++++|||.||..|+...+... ...||.|+..+...+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 8889999999999999999988754 336999997765443
No 164
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.53 E-value=3.1 Score=50.62 Aligned_cols=8 Identities=13% Similarity=-0.105 Sum_probs=3.8
Q ss_pred ccccchhh
Q 002816 837 ITKCYHLF 844 (877)
Q Consensus 837 ~~~c~h~~ 844 (877)
+++=|-.|
T Consensus 815 ~LSGGE~~ 822 (908)
T COG0419 815 TLSGGERF 822 (908)
T ss_pred cCCchHHH
Confidence 34445555
No 165
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.52 E-value=2.4 Score=49.30 Aligned_cols=9 Identities=11% Similarity=0.106 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 002816 863 CAASFSPND 871 (877)
Q Consensus 863 c~~~~~~~~ 871 (877)
.-.||+.-|
T Consensus 580 iD~p~~~lD 588 (650)
T TIGR03185 580 IDTPLGRLD 588 (650)
T ss_pred EcCCccccC
Confidence 345555433
No 166
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.52 E-value=0.75 Score=43.36 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 002816 783 KRLEEDLEMGRRKV 796 (877)
Q Consensus 783 ~~~~~el~~l~~~l 796 (877)
..+..++..|..+|
T Consensus 174 ~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 174 KSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344333333
No 167
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.97 Score=44.17 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=7.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 002816 620 ALKSKNEEIEAYLSEIETIGQ 640 (877)
Q Consensus 620 ~l~~~~~~~~~l~~e~~~l~~ 640 (877)
.+.+...++.....++..++.
T Consensus 67 k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 67 KIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 168
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.43 E-value=0.0027 Score=47.23 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=27.4
Q ss_pred ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 839 KCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 839 ~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
.|.|.|=..||.+|+.++. .||.|+..|...+
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~~~~ 84 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKG-VCPLDRQTWVLAD 84 (88)
T ss_pred ecchHHHHHHHHHHHhhCC-CCCCCCceeEEec
Confidence 5999999999999999744 5999999986544
No 169
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.41 E-value=2.4 Score=48.03 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=8.2
Q ss_pred hHHHHHHHHHhccCc
Q 002816 808 IIEELQQELREYREI 822 (877)
Q Consensus 808 ~~~~l~~~~~~l~~~ 822 (877)
.+..++..+..+...
T Consensus 597 ~~q~lq~al~~ld~P 611 (980)
T KOG0980|consen 597 GIQALQNALYQLDSP 611 (980)
T ss_pred HHHHHHHHHHhcCCC
Confidence 455566665555544
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.40 E-value=0.0017 Score=62.86 Aligned_cols=52 Identities=21% Similarity=0.643 Sum_probs=40.2
Q ss_pred cccccccccc--ccccc--ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 824 KCSICLERPK--EVVIT--KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 824 ~C~~C~~~~~--~~~~~--~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
-||.|++.+. +.-++ +||..+|..|....-..-...||.||..+....|+-+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~ 71 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV 71 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence 4999999774 33344 6899999999887766556679999999988877643
No 171
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.32 E-value=0.47 Score=45.93 Aligned_cols=27 Identities=26% Similarity=0.650 Sum_probs=20.9
Q ss_pred hhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 844 FCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 844 ~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
.|.+|..-++++ ...||.|...-...+
T Consensus 196 ~C~sC~qqIHRN-APiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRN-APICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcC-CCCCcccccccccCC
Confidence 399999999885 567999987665443
No 172
>PF13514 AAA_27: AAA domain
Probab=96.31 E-value=4.8 Score=50.31 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=15.6
Q ss_pred hcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhc
Q 002816 507 SSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRR 541 (877)
Q Consensus 507 ~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~ 541 (877)
...........+...+..+...+..+...+..+..
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 494 (1111)
T PF13514_consen 460 EFEELERQLRRARDRLEELEEELARLEARLRRLAA 494 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444433
No 173
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0023 Score=47.13 Aligned_cols=46 Identities=24% Similarity=0.578 Sum_probs=34.5
Q ss_pred ccccccccccc------------cccc-ccchhhhHHhHHHHhccC--CCCCCCCCCCCCC
Q 002816 824 KCSICLERPKE------------VVIT-KCYHLFCNPCVQKVTESR--HRKCPGCAASFSP 869 (877)
Q Consensus 824 ~C~~C~~~~~~------------~~~~-~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~ 869 (877)
.|.||.-.|.. |.++ .|.|.|=..||..|+.+. ...||+||..|.-
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 67777665532 3333 599999999999999864 5689999988753
No 174
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.24 E-value=0.18 Score=41.44 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q 002816 632 LSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ 711 (877)
Q Consensus 632 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~ 711 (877)
..++..+..++............++..++..+..+..++.+..+.++.+...++.+..++..+...+......+..+.+.
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45777888888888888888889999999999999999999999999999999999999998888887777666666553
No 175
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.19 E-value=0.79 Score=40.21 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 729 NSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRL 766 (877)
Q Consensus 729 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~ 766 (877)
+...+..+......+...+...+.++..++.....+..
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333333333333333333344444333333333
No 176
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.17 E-value=0.0022 Score=63.69 Aligned_cols=45 Identities=31% Similarity=0.677 Sum_probs=36.5
Q ss_pred cccccccccccc----ccccccchhhhHHhHHHHhccC-CCCCCCCCCCC
Q 002816 823 LKCSICLERPKE----VVITKCYHLFCNPCVQKVTESR-HRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~ 867 (877)
+.|..|++.+.. --.+||.|+|-..|+..++..+ .+.||.||+..
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 799999998743 2357999999999999888644 78999999443
No 177
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0029 Score=60.80 Aligned_cols=35 Identities=26% Similarity=0.771 Sum_probs=31.1
Q ss_pred ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCc
Q 002816 839 KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 839 ~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 873 (877)
+|||..|.+|++..+...+..||.|+..+..+.++
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 89999999999999998888999999988766554
No 178
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=1.5 Score=42.91 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 002816 628 IEAYLSEIETIG 639 (877)
Q Consensus 628 ~~~l~~e~~~l~ 639 (877)
+..+..+|..+.
T Consensus 82 ik~l~~eI~~~~ 93 (265)
T COG3883 82 IKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 179
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.09 E-value=3.9 Score=47.34 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=17.4
Q ss_pred HHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHH
Q 002816 221 LKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECN 262 (877)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~ 262 (877)
.++..+......+...+..-...+..+...+..+...++...
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r 222 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR 222 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334443333333444444444444444444443
No 180
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.05 E-value=0.0032 Score=63.12 Aligned_cols=44 Identities=34% Similarity=0.861 Sum_probs=35.9
Q ss_pred cCccccccccccccccccccc--chhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 820 REILKCSICLERPKEVVITKC--YHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c--~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
-..+.||||+..+..| ++.| ||+.|..|..... ..||+|+.+++
T Consensus 46 ~~lleCPvC~~~l~~P-i~QC~nGHlaCssC~~~~~----~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP-IFQCDNGHLACSSCRTKVS----NKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc-ceecCCCcEehhhhhhhhc----ccCCccccccc
Confidence 3458999999999866 5555 9999999997543 36999999998
No 181
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.015 Score=64.55 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhccCcccccccccccccc-cccccchhhhHHh
Q 002816 770 ELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREILKCSICLERPKEV-VITKCYHLFCNPC 848 (877)
Q Consensus 770 ~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~C~~C~~~~~~~-~~~~c~h~~c~~C 848 (877)
.-...+++-+..+..+.+++...+..+..|..... .-..-+|+.|.-.+.-| |.+.|||.|-..|
T Consensus 802 ~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~--------------i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC 867 (933)
T KOG2114|consen 802 KYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSAQ--------------IFQVSKCSACEGTLDLPFVHFLCGHSYHQHC 867 (933)
T ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccc--------------eeeeeeecccCCccccceeeeecccHHHHHh
Confidence 33444555556677777777777777776654321 11225899999888765 5679999999999
Q ss_pred HHHHhccCCCCCCCCCCC
Q 002816 849 VQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 849 ~~~~~~~~~~~Cp~c~~~ 866 (877)
+.. ....||.|...
T Consensus 868 ~e~----~~~~CP~C~~e 881 (933)
T KOG2114|consen 868 LED----KEDKCPKCLPE 881 (933)
T ss_pred hcc----CcccCCccchh
Confidence 972 35689999873
No 182
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.93 E-value=3.4 Score=45.21 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 591 QRLAAAEAEIADMRQKLEAFKRDMVSLSDALKS 623 (877)
Q Consensus 591 ~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~ 623 (877)
..+.....+|..+..++......+..+...+..
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555555555555444444444443
No 183
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.013 Score=65.46 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=26.4
Q ss_pred cccccccccccc--ccccccchhhhHHhHHHHhcc
Q 002816 823 LKCSICLERPKE--VVITKCYHLFCNPCVQKVTES 855 (877)
Q Consensus 823 l~C~~C~~~~~~--~~~~~c~h~~c~~C~~~~~~~ 855 (877)
-.|.+|+..+-. -++++|||.|-+.|+.....+
T Consensus 818 d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 818 DSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred cchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 389999887643 346799999999999887653
No 184
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.83 E-value=4.7 Score=46.08 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 413 SKIADLGIEIQKQIDEKNRIEMRLEE 438 (877)
Q Consensus 413 ~~~~~le~~l~~~~~~~~~l~~~l~~ 438 (877)
..+.+.-..+..-+.....++.+|..
T Consensus 156 ~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 156 KQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555544
No 185
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=95.79 E-value=0.003 Score=69.22 Aligned_cols=54 Identities=35% Similarity=0.772 Sum_probs=43.8
Q ss_pred HHHhccCcccccccccccccccccccchhhhHHhHHHHhccC--CCCCCCCCCCCC
Q 002816 815 ELREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFS 868 (877)
Q Consensus 815 ~~~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~ 868 (877)
-+..+...+.|+||...+..|+.+.|.|.||..|+...+... ...||+|.....
T Consensus 14 vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 14 VINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 345556669999999999999999999999999998877643 347999985543
No 186
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.72 E-value=2.9 Score=42.95 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 713 RFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMG 792 (877)
Q Consensus 713 ~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l 792 (877)
..+..++.........++..+.....-...+..++..+...+..++.+...+..+.......+-.+-........++..+
T Consensus 212 ~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~ 291 (309)
T PF09728_consen 212 KELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKL 291 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444445555555555555444444444444555555555656
Q ss_pred HHHHHHHh
Q 002816 793 RRKVLRLQ 800 (877)
Q Consensus 793 ~~~l~~l~ 800 (877)
..++..|.
T Consensus 292 ~~k~~kLe 299 (309)
T PF09728_consen 292 KKKIEKLE 299 (309)
T ss_pred HHHHHHHH
Confidence 65555554
No 187
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.01 Score=54.11 Aligned_cols=55 Identities=24% Similarity=0.555 Sum_probs=42.8
Q ss_pred HHHHHhccC---cccccccccccc--cccccccchhhhHHhHHHHhcc-------CCCCCCCCCCCC
Q 002816 813 QQELREYRE---ILKCSICLERPK--EVVITKCYHLFCNPCVQKVTES-------RHRKCPGCAASF 867 (877)
Q Consensus 813 ~~~~~~l~~---~l~C~~C~~~~~--~~~~~~c~h~~c~~C~~~~~~~-------~~~~Cp~c~~~~ 867 (877)
+.-+.||++ ...|..|+..+. +++.+-|.|.|-+.|+..|.-. ..+.||.|...+
T Consensus 38 QSYLqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 38 QSYLQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred HHHHHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 455666655 368999999875 5788899999999999998753 246899998665
No 188
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0081 Score=56.98 Aligned_cols=40 Identities=35% Similarity=0.786 Sum_probs=33.4
Q ss_pred cccccccccccccccccchhh-hHHhHHHHhccCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKEVVITKCYHLF-CNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~~c~h~~-c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.|-.|+..-...+.+||.|.. |..|-.+ -+.||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhh
Confidence 499999999988899999987 9999765 246999987763
No 189
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.58 E-value=0.0053 Score=68.16 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=37.2
Q ss_pred Ccccccccccccc-------cccccccchhhhHHhHHHHhccC-CCCCCCCCCCCC
Q 002816 821 EILKCSICLERPK-------EVVITKCYHLFCNPCVQKVTESR-HRKCPGCAASFS 868 (877)
Q Consensus 821 ~~l~C~~C~~~~~-------~~~~~~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~ 868 (877)
.--.|+||...+. ....-+|.|-|-..|+..|+.+. ...||.||..|+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3347999987664 12234799999999999999876 457999998775
No 190
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0047 Score=58.58 Aligned_cols=34 Identities=32% Similarity=0.822 Sum_probs=30.3
Q ss_pred ccccccccccccccccccc----chhhhHHhHHHHhcc
Q 002816 822 ILKCSICLERPKEVVITKC----YHLFCNPCVQKVTES 855 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c----~h~~c~~C~~~~~~~ 855 (877)
.|.|.+|++++-++.+..| +|-||+.|....++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 4899999999999988888 899999999888763
No 191
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.009 Score=55.83 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=43.0
Q ss_pred cCccccccccccccccc----ccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 820 REILKCSICLERPKEVV----ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
+..|.|||-+-.|.... ...|||+|-..-+...-. ..||.|+.+|...|+..+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeEee
Confidence 45689999998887743 448999999998887643 579999999999997654
No 192
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.34 E-value=3.7 Score=41.68 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002816 698 LNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLE 734 (877)
Q Consensus 698 l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~ 734 (877)
++.+-.+..-+.+.+..++.+..-+...+..|...++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444
No 193
>PF13514 AAA_27: AAA domain
Probab=95.24 E-value=12 Score=46.87 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=11.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 245 NRLKGELESAVKELEECNCKLAALRAER 272 (877)
Q Consensus 245 ~~l~~~l~~l~~ele~~~~~~~~~~~~~ 272 (877)
..+...+..+...+......+..+....
T Consensus 356 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 383 (1111)
T PF13514_consen 356 EQLEQALAQARRELEEAERELEQLQAEL 383 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 194
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.17 E-value=0.1 Score=61.22 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=43.2
Q ss_pred HHHHhccCcccccccccccc-cccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 814 QELREYREILKCSICLERPK-EVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 814 ~~~~~l~~~l~C~~C~~~~~-~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
..+..+-..+.|++|++.+. -..++.|||.||..|...|.. ....||+|...++
T Consensus 1145 ~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1145 RYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred HHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence 33444555679999999998 467889999999999999998 4567999986553
No 195
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.06 E-value=4.4 Score=40.95 Aligned_cols=14 Identities=36% Similarity=0.556 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 002816 591 QRLAAAEAEIADMR 604 (877)
Q Consensus 591 ~~l~~~~~~l~~l~ 604 (877)
..+..++.-+..++
T Consensus 127 ~~l~ea~~mL~emr 140 (264)
T PF06008_consen 127 RALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 196
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.0086 Score=57.64 Aligned_cols=41 Identities=24% Similarity=0.554 Sum_probs=29.6
Q ss_pred ccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 824 KCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 824 ~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
-|.-|...+.- -.+++|-|+||.+|.... ....||.|...+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHH
Confidence 57778765543 336799999999998543 246799997554
No 197
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.98 E-value=0.025 Score=39.48 Aligned_cols=41 Identities=17% Similarity=0.623 Sum_probs=31.8
Q ss_pred ccccccc--ccccccccccc-----hhhhHHhHHHHhccC-CCCCCCCC
Q 002816 824 KCSICLE--RPKEVVITKCY-----HLFCNPCVQKVTESR-HRKCPGCA 864 (877)
Q Consensus 824 ~C~~C~~--~~~~~~~~~c~-----h~~c~~C~~~~~~~~-~~~Cp~c~ 864 (877)
.|-||+. ...++.+.||. |.|=..|+..|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889987 33457788984 888899999999754 45799995
No 198
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.97 E-value=0.011 Score=41.40 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=23.0
Q ss_pred ccccccccccccccc-cccchhhhHH---hHHHHhccCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVI-TKCYHLFCNP---CVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 823 l~C~~C~~~~~~~~~-~~c~h~~c~~---C~~~~~~~~~~~Cp~c~~~ 866 (877)
+.||+.+..+..|+. ..|.|.-|++ -+......+.-.||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 789999999999885 5899998863 3444444455689999864
No 199
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.95 E-value=0.071 Score=45.53 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=24.3
Q ss_pred ccccccccccccccc--ccccchhhhHHhHH
Q 002816 822 ILKCSICLERPKEVV--ITKCYHLFCNPCVQ 850 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~--~~~c~h~~c~~C~~ 850 (877)
.-.|++|+..+.+++ ++||||+|...|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 358999999998654 56999999999975
No 200
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.94 E-value=0.016 Score=56.64 Aligned_cols=45 Identities=22% Similarity=0.623 Sum_probs=36.2
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhc-cCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTE-SRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~-~~~~~Cp~c~~~~ 867 (877)
..|.||-..++-...+||||..|..|.-+.-- .....||+|+...
T Consensus 62 ~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 62 MNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 68999999888889999999999999865321 1246799999754
No 201
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.016 Score=57.90 Aligned_cols=37 Identities=30% Similarity=0.673 Sum_probs=28.7
Q ss_pred ccccchhhhHHhHHHHhccC--CCCCCCCCCCCCCCCCc
Q 002816 837 ITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPNDVK 873 (877)
Q Consensus 837 ~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~~~~~ 873 (877)
+-.|||+|-..|+..|+... .|.||+|+-..+..+|.
T Consensus 23 i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 23 IGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 44699999999999999864 36899999555554443
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.90 E-value=6.3 Score=41.86 Aligned_cols=68 Identities=13% Similarity=0.032 Sum_probs=44.4
Q ss_pred CCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHH
Q 002816 30 FPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLE 97 (877)
Q Consensus 30 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~ 97 (877)
-+++.-...|+..+.....+-.+.++..-+--..+..+...|+.+-+..+.+..+.-..+.++..++.
T Consensus 54 ~~~~tkt~~d~d~lt~lle~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels 121 (596)
T KOG4360|consen 54 VRQMTKTYNDIDFLTELLEEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELS 121 (596)
T ss_pred cchhhccccchHHHHHHHhcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhh
Confidence 44666678888888777777777777666666666677777777766666655555444444444443
No 203
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.87 E-value=8.1 Score=43.05 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 002816 784 RLEEDLEMGRRKVLRLQAQT 803 (877)
Q Consensus 784 ~~~~el~~l~~~l~~l~~~~ 803 (877)
....+..+|..++..+....
T Consensus 636 ~~~~e~~rl~~rlqelerdk 655 (739)
T PF07111_consen 636 ARKEEGQRLTQRLQELERDK 655 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34456666777777766543
No 204
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.011 Score=61.07 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=30.7
Q ss_pred ccccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 833 KEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 833 ~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
..|.+++|||+||..|+...+....-.||+||.+.
T Consensus 20 ~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 20 HIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 44778889999999999999987777899999994
No 205
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.81 E-value=0.037 Score=53.23 Aligned_cols=83 Identities=22% Similarity=0.407 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhhhcCcchHHHHHHHHHhccC-----ccccccccccccc-c--cccccchhhhHHhHHHHhcc----
Q 002816 788 DLEMGRRKVLRLQAQTEGSSIIEELQQELREYRE-----ILKCSICLERPKE-V--VITKCYHLFCNPCVQKVTES---- 855 (877)
Q Consensus 788 el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~~-----~l~C~~C~~~~~~-~--~~~~c~h~~c~~C~~~~~~~---- 855 (877)
++..+.+.+......+.+...+=+|-+-...+-. -..|.||.--|.+ + ..+.|.|-|-..|+.+++..
T Consensus 76 ~~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~ 155 (368)
T KOG4445|consen 76 EFREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTG 155 (368)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHH
Confidence 4445555566665566666666555554433322 2479999888865 3 35689999999999888752
Q ss_pred ------------------CCCCCCCCCCCCCCC
Q 002816 856 ------------------RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ------------------~~~~Cp~c~~~~~~~ 870 (877)
-...||+|+..++..
T Consensus 156 lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 156 LRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 012599999888643
No 206
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.71 E-value=5.3 Score=40.16 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 002816 783 KRLEEDLEMG 792 (877)
Q Consensus 783 ~~~~~el~~l 792 (877)
...++++..+
T Consensus 293 ~EaQEElk~l 302 (306)
T PF04849_consen 293 HEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 207
>PRK11281 hypothetical protein; Provisional
Probab=94.69 E-value=15 Score=45.07 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 648 QNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQ 693 (877)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~ 693 (877)
.+..+...+.....+++.+..+....++.+..+......++.++.-
T Consensus 286 ~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 286 INLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666555555555555555555554443
No 208
>PHA03096 p28-like protein; Provisional
Probab=94.64 E-value=0.018 Score=57.36 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=30.6
Q ss_pred cccccccccccc--------ccccccchhhhHHhHHHHhccC--CCCCCCCCC
Q 002816 823 LKCSICLERPKE--------VVITKCYHLFCNPCVQKVTESR--HRKCPGCAA 865 (877)
Q Consensus 823 l~C~~C~~~~~~--------~~~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~ 865 (877)
-.|.||++.... .+...|-|.||..|+..|...+ ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 479999986542 2334799999999999988754 334555553
No 209
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.026 Score=44.60 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=25.6
Q ss_pred ccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 839 KCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 839 ~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.|.|.|-+.||.+|++++.+ ||.|.....
T Consensus 80 ~CNHaFH~hCisrWlktr~v-CPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNV-CPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCc-CCCcCccee
Confidence 59999999999999998776 999987653
No 210
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.43 E-value=13 Score=43.30 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHH
Q 002816 413 SKIADLGIEIQKQI 426 (877)
Q Consensus 413 ~~~~~le~~l~~~~ 426 (877)
..|..|+.+.+.++
T Consensus 190 kkiakLEaEC~rLr 203 (769)
T PF05911_consen 190 KKIAKLEAECQRLR 203 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 211
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.40 E-value=0.0078 Score=45.88 Aligned_cols=47 Identities=28% Similarity=0.574 Sum_probs=23.0
Q ss_pred cccccccccccc-c---ccc----cccchhhhHHhHHHHhcc----CC------CCCCCCCCCCC
Q 002816 822 ILKCSICLERPK-E---VVI----TKCYHLFCNPCVQKVTES----RH------RKCPGCAASFS 868 (877)
Q Consensus 822 ~l~C~~C~~~~~-~---~~~----~~c~h~~c~~C~~~~~~~----~~------~~Cp~c~~~~~ 868 (877)
.+.|+||+..+. . |.. -.|++.|=..|+..|+.. +. -.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 368999998654 2 222 279999999999999873 11 15999998874
No 212
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.38 E-value=7.7 Score=40.57 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=8.4
Q ss_pred cchHHHHHHHHHhccC
Q 002816 806 SSIIEELQQELREYRE 821 (877)
Q Consensus 806 ~~~~~~l~~~~~~l~~ 821 (877)
...+..++..++.|..
T Consensus 275 ~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 275 RSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555443
No 213
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.22 E-value=13 Score=42.58 Aligned_cols=212 Identities=19% Similarity=0.207 Sum_probs=104.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHhhHhHHHHHHHHHhhhccCCCCCcccccccccc
Q 002816 43 LQFQNQKLVQKLETQKVEYSALENKFAQLKE---RQQPYDSTLKVVNKSWEELITDLESCSMRARESSNGQESRCLSIIE 119 (877)
Q Consensus 43 l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~---~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 119 (877)
|+.|...|.+.|+.++-+-++=-.++.+|.. ..+.....+.++......|.++|..-..........
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~---------- 298 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEA---------- 298 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 7888888888887777666555555555554 444555556666666677777766443222111100
Q ss_pred CCCCCCchhHHHHHHhhccCCCCCCCCCCcchhHHhH-hhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHhccccCCchh
Q 002816 120 DVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDR-ETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDGGSK 198 (877)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (877)
.......+..+ + ++-+.-.++.++ ..+...++.++..+...++.+...++-+...+.....+....
T Consensus 299 ----ke~~k~emad~----a-----d~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ 365 (1243)
T KOG0971|consen 299 ----KERYKEEMADT----A-----DAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAA 365 (1243)
T ss_pred ----HHHHHHHHHHH----H-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 00000011111 0 000111223332 234555666666666666676666666666665542222221
Q ss_pred -hhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 002816 199 -QKASSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKG 277 (877)
Q Consensus 199 -~~~~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~~~~~~~~~ 277 (877)
......++.....++..+-.+..-...-......+...++....++..+...-+.+..+++.....+..+.++.+..-+
T Consensus 366 ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG 445 (1243)
T KOG0971|consen 366 SSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG 445 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1133444444445555554444433333334444444444444555555555555555555555555555555554433
No 214
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.21 E-value=4.7 Score=38.98 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002816 781 AKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l~ 800 (877)
.+.+++.++..++..++...
T Consensus 110 qie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 110 QIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 215
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=8.5 Score=40.23 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=27.9
Q ss_pred CCCCCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Q 002816 27 NPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDST 81 (877)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~ 81 (877)
+-|++........+..+..++... .+....++...-.+..|+++.......
T Consensus 220 p~~~~passe~ee~eel~eq~een----eel~ae~kqh~v~~~ales~~sq~~e~ 270 (521)
T KOG1937|consen 220 PIFAKPASSEEEEVEELTEQNEEN----EELQAEYKQHLVEYKALESKRSQFEEQ 270 (521)
T ss_pred cccCCCccccchhHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 555544333444477777777666 444455555555566666655444433
No 216
>PRK11281 hypothetical protein; Provisional
Probab=94.14 E-value=19 Score=44.13 Aligned_cols=19 Identities=5% Similarity=0.079 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 002816 552 ARDLEYKAWAHVHSLKSSL 570 (877)
Q Consensus 552 l~~~~~~~~~~~~~l~~~l 570 (877)
++..+.....++...+..+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~L 144 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDL 144 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 217
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=94.12 E-value=0.065 Score=37.26 Aligned_cols=48 Identities=19% Similarity=0.483 Sum_probs=33.8
Q ss_pred ccccccccccccc--ccccccc--hhhhHHhHHHHhccCCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE--VVITKCY--HLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 822 ~l~C~~C~~~~~~--~~~~~c~--h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
...|..|...+.. +-...|. .+||.+|....+. ..||.|+-.|...-+
T Consensus 5 rpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVRRPR 56 (57)
T ss_pred CCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCccccCCC
Confidence 3578889876643 1233443 3799999999865 479999998876543
No 218
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.02 E-value=7.7 Score=46.32 Aligned_cols=24 Identities=8% Similarity=-0.201 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 775 LVKERFAKKRLEEDLEMGRRKVLR 798 (877)
Q Consensus 775 l~~~~~~~~~~~~el~~l~~~l~~ 798 (877)
+..++.+..-.+.-+..+-.++++
T Consensus 378 ~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 378 LDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333
No 219
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.59 E-value=6.9 Score=37.24 Aligned_cols=26 Identities=8% Similarity=0.302 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002816 600 IADMRQKLEAFKRDMVSLSDALKSKN 625 (877)
Q Consensus 600 l~~l~~~~~~~~~~~~~l~~~l~~~~ 625 (877)
...+...+..+......+..-+..++
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~E 50 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYE 50 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444333333333333333
No 220
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.42 E-value=16 Score=41.07 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 774 ELVKERFAKKRLEEDLEMGRRKVLR 798 (877)
Q Consensus 774 ~l~~~~~~~~~~~~el~~l~~~l~~ 798 (877)
++..+..+....+..+..+..+++.
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 221
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.42 E-value=13 Score=40.03 Aligned_cols=49 Identities=4% Similarity=-0.052 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q 002816 662 YNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIEN 710 (877)
Q Consensus 662 ~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~ 710 (877)
.+..+...+..-...+..++..+..+...+..++.....+...+..+.+
T Consensus 362 ~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk 410 (570)
T COG4477 362 VLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK 410 (570)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444444433333
No 222
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.31 E-value=0.048 Score=46.53 Aligned_cols=35 Identities=29% Similarity=0.665 Sum_probs=27.5
Q ss_pred cCccccccccccccc---ccccccc------hhhhHHhHHHHhc
Q 002816 820 REILKCSICLERPKE---VVITKCY------HLFCNPCVQKVTE 854 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~---~~~~~c~------h~~c~~C~~~~~~ 854 (877)
+....|.||++.+.+ .|.++|| |+||..|+.+|.+
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 336789999998865 4556776 8899999999944
No 223
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=0.041 Score=51.31 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=28.8
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhc
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~ 854 (877)
--|+.|..++.+||+++-||+||..||-.++-
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 46899999999999999999999999987764
No 224
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.20 E-value=8.7 Score=37.24 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 002816 781 AKKRLEEDLEMGR 793 (877)
Q Consensus 781 ~~~~~~~el~~l~ 793 (877)
..++++.++..|.
T Consensus 177 erkrle~e~k~lq 189 (307)
T PF10481_consen 177 ERKRLEAEVKALQ 189 (307)
T ss_pred HHhhHHHHHHHHh
Confidence 3344444444433
No 225
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.19 E-value=0.089 Score=38.36 Aligned_cols=50 Identities=20% Similarity=0.525 Sum_probs=35.4
Q ss_pred ccccccccccccc----ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcc
Q 002816 822 ILKCSICLERPKE----VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKP 874 (877)
Q Consensus 822 ~l~C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~ 874 (877)
...|..|-..+.. ..+-+=-|+||.+|....+. -.||.|+-.|....+++
T Consensus 5 RPnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RP 58 (84)
T COG3813 5 RPNCECCDRDLPPDSTDARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRP 58 (84)
T ss_pred cCCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCCh
Confidence 3578878655432 23334467999999998776 47999999887776654
No 226
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.15 E-value=16 Score=40.15 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 002816 557 YKAWAHVHSL 566 (877)
Q Consensus 557 ~~~~~~~~~l 566 (877)
..+..++..+
T Consensus 84 ~~l~~~~~~l 93 (423)
T TIGR01843 84 AELESQVLRL 93 (423)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 227
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.00 E-value=0.065 Score=55.04 Aligned_cols=35 Identities=37% Similarity=0.704 Sum_probs=27.2
Q ss_pred cchhhhHHhHHHHhccCC------------CCCCCCCCCCCCCCCcc
Q 002816 840 CYHLFCNPCVQKVTESRH------------RKCPGCAASFSPNDVKP 874 (877)
Q Consensus 840 c~h~~c~~C~~~~~~~~~------------~~Cp~c~~~~~~~~~~~ 874 (877)
|.=+.|.+|+-+|+-+++ -.||+||+.|.--||..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~~ 357 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVCY 357 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeeec
Confidence 334458899999997653 27999999999988754
No 228
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.91 E-value=14 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 002816 786 EEDLEMGRRKVLRLQAQTE 804 (877)
Q Consensus 786 ~~el~~l~~~l~~l~~~~~ 804 (877)
..++..++..+..|....+
T Consensus 275 ~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 275 RSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 3566667777776665543
No 229
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.88 E-value=5.5 Score=34.10 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002816 640 QSYDDMQTQNQQLLQQITERDDYNIKLVLE 669 (877)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 669 (877)
..+.+++.....+..-+-+..+.+.+|+.+
T Consensus 75 ~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 75 QELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 333333333333333333333333333333
No 230
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.63 E-value=15 Score=38.58 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002816 549 VLAARDLEYKAWAHVHSLKSSLD 571 (877)
Q Consensus 549 ~~~l~~~~~~~~~~~~~l~~~l~ 571 (877)
+..+..+...+..+++.+..+.+
T Consensus 370 fe~mn~Ere~L~reL~~i~~~~~ 392 (622)
T COG5185 370 FELMNQEREKLTRELDKINIQSD 392 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcchHH
Confidence 44444555555555555544443
No 231
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.59 E-value=6.9 Score=41.08 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhcc
Q 002816 761 VYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYR 820 (877)
Q Consensus 761 ~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~ 820 (877)
+.............+......+.++.++++..+..+++-|+...+++.+-.+...+..|+
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk 341 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLK 341 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 333333333333334444444555666666666667766666665555444444444443
No 232
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.57 E-value=19 Score=39.54 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002816 596 AEAEIADMRQKLEAFKRDMVSLS 618 (877)
Q Consensus 596 ~~~~l~~l~~~~~~~~~~~~~l~ 618 (877)
+..++..++.++..+...+..+.
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVARLR 101 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444333
No 233
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.029 Score=56.68 Aligned_cols=43 Identities=28% Similarity=0.725 Sum_probs=33.7
Q ss_pred cccccccchhhhHHhHHHHhccC-CCCCCCCCCCCCCCCCcccC
Q 002816 834 EVVITKCYHLFCNPCVQKVTESR-HRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 834 ~~~~~~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~~~~~~~~~ 876 (877)
..+++.|||.|-..|+.+|+... ...||.|.......++++.|
T Consensus 21 r~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 21 RIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred EEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHH
Confidence 35678999999999999999622 34699998877777776654
No 234
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.29 Score=50.64 Aligned_cols=44 Identities=27% Similarity=0.534 Sum_probs=35.5
Q ss_pred cccccccccccc------ccccc--------cchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE------VVITK--------CYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 823 l~C~~C~~~~~~------~~~~~--------c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
..|.+|...|.. |.++. |||..|..|+...+......||+|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 478899777762 45555 999999999999988666899999874
No 235
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.45 E-value=33 Score=42.00 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 647 TQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQ 693 (877)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~ 693 (877)
..+..+...+.....+++.+..+....++.+..+......++.++.-
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~ 311 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQW 311 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566666666555555555555555555555443
No 236
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.85 E-value=5.2 Score=41.37 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002816 775 LVKERFAKKRLEEDLEMGRRKVLRLQAQTE 804 (877)
Q Consensus 775 l~~~~~~~~~~~~el~~l~~~l~~l~~~~~ 804 (877)
+.........+...+......+..|...|.
T Consensus 108 l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 108 LIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333334445555556666666666666553
No 237
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.84 E-value=11 Score=35.28 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Q 002816 644 DMQTQNQQLLQQITERDDYNIKLV 667 (877)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~l~ 667 (877)
.++-.+..+...+.+-..++..+.
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344433333333333
No 238
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=91.71 E-value=0.15 Score=38.25 Aligned_cols=47 Identities=23% Similarity=0.630 Sum_probs=21.7
Q ss_pred cccccccccccc----ccc---cccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE----VVI---TKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~~----~~~---~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
-.|-||++..-- -++ ..|+-..|+.|..--.+.....||-|++++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 489999986632 222 36898999999987777677889999988853
No 239
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.65 E-value=32 Score=40.16 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002816 413 SKIADLGIEIQKQIDEKNRIEMRLEEASR 441 (877)
Q Consensus 413 ~~~~~le~~l~~~~~~~~~l~~~l~~~~~ 441 (877)
.....++.++..+..++......+..+..
T Consensus 262 ~~r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 262 EEREQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455666666666666666666555433
No 240
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.65 E-value=33 Score=40.29 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHH
Q 002816 513 AEIHKLQAMVQDLTDSNLELKLI 535 (877)
Q Consensus 513 ~ei~~l~~~~~~l~~~~~~l~~~ 535 (877)
.++..+++++......+..++..
T Consensus 636 e~~~~~~~~~~~~~~~~r~lee~ 658 (1072)
T KOG0979|consen 636 EEIQKLKAEIDIRSSTLRELEEK 658 (1072)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444444444444444444433
No 241
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=91.64 E-value=0.018 Score=42.67 Aligned_cols=39 Identities=21% Similarity=0.560 Sum_probs=22.3
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
+.||.|...+...- ||.+|..|-..+.. ...||.|+.++
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~--~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK--EAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE--EEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee--cccCCCcccHH
Confidence 68999999876542 78888888876433 34688888765
No 242
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.38 E-value=3.3 Score=38.45 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002816 732 NLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQ 802 (877)
Q Consensus 732 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~ 802 (877)
....++.++.++..+...+...+..++.++...+.++..++.+...+....+++..++..|+.+++.|.+.
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33344444444445555555555566666666666666666666666666666666677777777776654
No 243
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.28 E-value=0.063 Score=35.76 Aligned_cols=44 Identities=25% Similarity=0.690 Sum_probs=22.8
Q ss_pred ccccccccccccccccccc-hhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCY-HLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~-h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
+.|..|--. +.-...|. |-.|..|+..++. +...||+|+.+++.
T Consensus 3 ~nCKsCWf~--~k~Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFA--NKGLIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S----SSEEE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred ccChhhhhc--CCCeeeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 456666432 23345675 5559999999888 45569999998753
No 244
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.72 E-value=15 Score=34.52 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002816 781 AKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l 799 (877)
....++..+..|+.++..+
T Consensus 153 ~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 153 EVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554443
No 245
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.68 E-value=6.4 Score=40.71 Aligned_cols=12 Identities=8% Similarity=0.301 Sum_probs=5.6
Q ss_pred ccchhhhHHhHH
Q 002816 839 KCYHLFCNPCVQ 850 (877)
Q Consensus 839 ~c~h~~c~~C~~ 850 (877)
.|-.-||..|..
T Consensus 247 ~~~~q~~~~~~~ 258 (314)
T PF04111_consen 247 DCLQQLAEFVEK 258 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 246
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.64 E-value=40 Score=39.41 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHhh
Q 002816 297 DEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTL 344 (877)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~~~el~~l~~~~~~l~~e~~~l~~~l 344 (877)
-+..++..+..+...+++.+..+..++.-.+.-+......+..++.++
T Consensus 262 ~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 262 FLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777888888888888877777777777777777777
No 247
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.60 E-value=25 Score=37.07 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 002816 552 ARDLEYKAWAHVHSLKSS 569 (877)
Q Consensus 552 l~~~~~~~~~~~~~l~~~ 569 (877)
+..++..-+.++..|+..
T Consensus 335 l~~eie~kEeei~~L~~~ 352 (622)
T COG5185 335 LKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333333333333333333
No 248
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=90.55 E-value=29 Score=37.64 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 002816 427 DEKNRIEMRL 436 (877)
Q Consensus 427 ~~~~~l~~~l 436 (877)
.+++.+...+
T Consensus 171 k~Le~i~~~l 180 (570)
T COG4477 171 KKLENIEEEL 180 (570)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 249
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=90.53 E-value=0.068 Score=53.89 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=31.7
Q ss_pred ccccccccccccccccc----ccc--hhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVIT----KCY--HLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~----~c~--h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.-.||||+....-.++. .=| |.+|.-|-..|... ...||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 35899999977544332 234 55599999999874 4479999864
No 250
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=90.48 E-value=0.2 Score=34.86 Aligned_cols=39 Identities=31% Similarity=0.664 Sum_probs=21.7
Q ss_pred ccccccccccc-------ccc---ccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 825 CSICLERPKEV-------VIT---KCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 825 C~~C~~~~~~~-------~~~---~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
|..|...|..+ ..+ .|++.||.+|=.=.+. .-..||.|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE-~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHE-TLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTT-TS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhc-cccCCcCCC
Confidence 66777777664 222 6999999999543333 445799994
No 251
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=1.8 Score=43.85 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=37.8
Q ss_pred ccccccccccc----ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKE----VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 824 ~C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.|.||+..++. .-.+.|||.+-..|+..|+.+ .++||.|+..+...
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN 247 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence 68899887765 345689999999999999996 77899999877543
No 252
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.39 E-value=0.12 Score=30.32 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q 002816 858 RKCPGCAASFS 868 (877)
Q Consensus 858 ~~Cp~c~~~~~ 868 (877)
..||.|+..|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 45666666653
No 253
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.36 E-value=24 Score=36.40 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=5.7
Q ss_pred chHHHHHHHHHhc
Q 002816 807 SIIEELQQELREY 819 (877)
Q Consensus 807 ~~~~~l~~~~~~l 819 (877)
.++..|...++.+
T Consensus 271 ~Ei~~Lk~~~~~L 283 (312)
T smart00787 271 KEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 254
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=90.21 E-value=0.22 Score=35.76 Aligned_cols=41 Identities=15% Similarity=0.416 Sum_probs=27.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhcc-CCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTES-RHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~-~~~~Cp~c~~~~~~ 869 (877)
.+.||.|+..+. ...++.-|....... ....||+|...++.
T Consensus 2 ~f~CP~C~~~~~-------~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~ 43 (54)
T PF05605_consen 2 SFTCPYCGKGFS-------ESSLVEHCEDEHRSESKNVVCPICSSRVTD 43 (54)
T ss_pred CcCCCCCCCccC-------HHHHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence 489999999554 234555666655443 25679999876653
No 255
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.87 E-value=35 Score=37.53 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002816 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLV 667 (877)
Q Consensus 588 ~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 667 (877)
.++.++.+++..-+.|.-++.-+..++..-.+.|.+++- -++.....+...++.+..-.-.+..++.+--+|+
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~-------cie~kr~kLnatEEmLQqellsrtsLETqKlDLm 180 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLET-------CIEEKRNKLNATEEMLQQELLSRTSLETQKLDLM 180 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHH-------HHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHH
Confidence 566666666666666666666655555555555544443 3333333333333333332223344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002816 668 LEGVRARQLQDALLMDKHMMESE 690 (877)
Q Consensus 668 ~~~~~~~~~~~~~~~e~~~l~~~ 690 (877)
.++..+.=.+..+..+..+.+..
T Consensus 181 aevSeLKLkltalEkeq~e~E~K 203 (861)
T KOG1899|consen 181 AEVSELKLKLTALEKEQNETEKK 203 (861)
T ss_pred HHHHHhHHHHHHHHHHhhhHHHH
Confidence 55555554444444444443333
No 256
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=89.86 E-value=39 Score=38.06 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002816 549 VLAARDLEYKAWAHVHSLKSSLD 571 (877)
Q Consensus 549 ~~~l~~~~~~~~~~~~~l~~~l~ 571 (877)
..++..++..+..+-+.+-.+|.
T Consensus 473 ~~dL~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 473 VTDLSLELQQLREERDRLDAELQ 495 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666655543
No 257
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=89.66 E-value=0.12 Score=40.79 Aligned_cols=35 Identities=26% Similarity=0.662 Sum_probs=28.6
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
-.|.+|......+ ||.||..|-.. .-.|.+|++.+
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki 79 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKI 79 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc-----cCcccccCCee
Confidence 3799998887766 99999999643 34699999987
No 258
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.53 E-value=33 Score=38.43 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 772 QIELVKERFAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 772 ~~~l~~~~~~~~~~~~el~~l~~~l~~l~ 800 (877)
...+..+....+++...++.|+..+..|.
T Consensus 229 kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 229 KKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444445555555555555555554
No 259
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.03 E-value=30 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 002816 787 EDLEMGRRKVLRLQAQT 803 (877)
Q Consensus 787 ~el~~l~~~l~~l~~~~ 803 (877)
.++..|+.++..|....
T Consensus 271 ~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 271 KEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555666666555443
No 260
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=0.32 Score=53.22 Aligned_cols=38 Identities=26% Similarity=0.641 Sum_probs=31.8
Q ss_pred ccCccccccccccccc-ccccccchhhhHHhHHHHhccC
Q 002816 819 YREILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESR 856 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~ 856 (877)
......|.||...+.. .+.+.|||.||..|...++...
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 3445899999998885 6677999999999999988753
No 261
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.76 E-value=0.17 Score=55.56 Aligned_cols=46 Identities=11% Similarity=0.262 Sum_probs=30.2
Q ss_pred cccccccccccc-------ccccccchhhhHHhHHHHhccC-----CCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE-------VVITKCYHLFCNPCVQKVTESR-----HRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~-------~~~~~c~h~~c~~C~~~~~~~~-----~~~Cp~c~~~~~ 868 (877)
-.|++|...+++ ...-.|+|.||..||..|...- .-.||+|...|.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 356666555554 2233599999999999998631 235777766553
No 262
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.72 E-value=28 Score=34.94 Aligned_cols=23 Identities=35% Similarity=0.237 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 002816 677 QDALLMDKHMMESEIQQANASLN 699 (877)
Q Consensus 677 ~~~~~~e~~~l~~~~~~~~~~l~ 699 (877)
+..+..+..+.+.+-..+..+++
T Consensus 150 L~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHH
Confidence 33333333333333333333333
No 263
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=88.63 E-value=0.17 Score=48.92 Aligned_cols=49 Identities=16% Similarity=0.393 Sum_probs=26.8
Q ss_pred Ccccccccccccccc---------cccccchhhhHHhHH-HHhc---------cCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEV---------VITKCYHLFCNPCVQ-KVTE---------SRHRKCPGCAASFSP 869 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~---------~~~~c~h~~c~~C~~-~~~~---------~~~~~Cp~c~~~~~~ 869 (877)
..+.|.+|...|... -.++|--.||-.=+. .|+- ..++.||.|++.|..
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 346788888777652 123444444433222 2221 135678888888854
No 264
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=88.57 E-value=0.12 Score=52.20 Aligned_cols=44 Identities=27% Similarity=0.497 Sum_probs=31.4
Q ss_pred cccccccccccccccc-c--ccc--hhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVI-T--KCY--HLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~-~--~c~--h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.-.||||+....-.++ . .=| |.+|.-|-..|... ...||.|+..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 4689999987654432 2 234 44599999999884 4469999863
No 265
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.56 E-value=19 Score=32.70 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=37.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002816 655 QITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLA 723 (877)
Q Consensus 655 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~ 723 (877)
++...-+....++..+..+.++-..+....+.++..+..+...+......+..+.-.+.-+...+..+.
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~ 146 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVS 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344444445555555565556666666666666666666666555555555554444444444433333
No 266
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=88.52 E-value=0.084 Score=54.14 Aligned_cols=44 Identities=27% Similarity=0.458 Sum_probs=22.3
Q ss_pred ccccccccccccccccc-----cchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITK-----CYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~-----c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
-.||||+....-.++.. -.|.+|.-|-..|...|. .||.|+..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~-~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRI-KCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TT-S-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCC-CCcCCCCCC
Confidence 59999999766544432 346669999999987544 699998653
No 267
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.49 E-value=37 Score=35.98 Aligned_cols=7 Identities=0% Similarity=0.501 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 002816 598 AEIADMR 604 (877)
Q Consensus 598 ~~l~~l~ 604 (877)
..+.+|+
T Consensus 345 ~kvkeLQ 351 (527)
T PF15066_consen 345 KKVKELQ 351 (527)
T ss_pred HHHHHHH
Confidence 3333333
No 268
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.36 E-value=41 Score=36.37 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=7.5
Q ss_pred HHHHhHhHhHHHHHHHHHH
Q 002816 321 LELKGLHDGRIKVLQQLYN 339 (877)
Q Consensus 321 ~el~~l~~~~~~l~~e~~~ 339 (877)
.+...+..++..+.+.+..
T Consensus 170 seYSELEEENIsLQKqVs~ 188 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSN 188 (772)
T ss_pred HHHHHHHHhcchHHHHHHH
Confidence 3333444444444444333
No 269
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.34 E-value=28 Score=34.53 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 002816 785 LEEDLEMGRRKVLR 798 (877)
Q Consensus 785 ~~~el~~l~~~l~~ 798 (877)
++..+..|+..|..
T Consensus 187 lq~QL~~L~~EL~~ 200 (246)
T PF00769_consen 187 LQEQLKELKSELEQ 200 (246)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 270
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=0.21 Score=47.94 Aligned_cols=36 Identities=33% Similarity=0.835 Sum_probs=28.4
Q ss_pred cchhhhHHhHHHHhccC------------CCCCCCCCCCCCCCCCccc
Q 002816 840 CYHLFCNPCVQKVTESR------------HRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 840 c~h~~c~~C~~~~~~~~------------~~~Cp~c~~~~~~~~~~~~ 875 (877)
|.-+.|.+|+..|+-.+ .-.||+||+.|.-.||..+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~v 372 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHCV 372 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeEE
Confidence 56677899999988643 2379999999998888654
No 271
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=0.38 Score=42.48 Aligned_cols=33 Identities=21% Similarity=0.563 Sum_probs=26.3
Q ss_pred cccchhhhHHhHHHHhcc----CC------CCCCCCCCCCCCC
Q 002816 838 TKCYHLFCNPCVQKVTES----RH------RKCPGCAASFSPN 870 (877)
Q Consensus 838 ~~c~h~~c~~C~~~~~~~----~~------~~Cp~c~~~~~~~ 870 (877)
..||..|-.-|+..|++. ++ -.||+|..|+.-+
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 479999999999999973 21 2699999988643
No 272
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=87.94 E-value=29 Score=34.10 Aligned_cols=80 Identities=6% Similarity=0.129 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhccCc
Q 002816 743 VRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREI 822 (877)
Q Consensus 743 l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 822 (877)
++.++..+..+...+...+..++........-+..-...+.+.-.+++.++..+++-|+.....+.+.++...+..|...
T Consensus 271 lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~e 350 (384)
T KOG0972|consen 271 LNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEE 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHH
Confidence 33444444444444444555555554444444444455667788888899999999999888777777777776666543
No 273
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.77 E-value=0.18 Score=41.65 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=15.4
Q ss_pred cccccccccccccccchhhhHH
Q 002816 826 SICLERPKEVVITKCYHLFCNP 847 (877)
Q Consensus 826 ~~C~~~~~~~~~~~c~h~~c~~ 847 (877)
-||...-...+...|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 3565655555566899999974
No 274
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.71 E-value=40 Score=35.53 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 718 QAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (877)
Q Consensus 718 ~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~ 770 (877)
+++.+..++......+...+.++......+..+...+..+..++...+..+.+
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555444444444444444444444444433
No 275
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.66 E-value=34 Score=34.60 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHhhHHHHHHHHH
Q 002816 516 HKLQAMVQDLTDSNLELKLILD 537 (877)
Q Consensus 516 ~~l~~~~~~l~~~~~~l~~~~~ 537 (877)
..|..++..+..+...|+..++
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444
No 276
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.34 E-value=0.37 Score=47.49 Aligned_cols=43 Identities=26% Similarity=0.595 Sum_probs=35.5
Q ss_pred cccccccccccc----cccccccchhhhHHhHHHHhccCCCCCCCCCC
Q 002816 822 ILKCSICLERPK----EVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 865 (877)
Q Consensus 822 ~l~C~~C~~~~~----~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~ 865 (877)
...||+|.+.+. .+..++|||..=..|+......+ +.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 356999987554 36688999999899999888866 88999987
No 277
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=87.15 E-value=0.15 Score=37.22 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=24.2
Q ss_pred ccccccccccccc----cccccchhhhHHhHHHHhc
Q 002816 823 LKCSICLERPKEV----VITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 823 l~C~~C~~~~~~~----~~~~c~h~~c~~C~~~~~~ 854 (877)
..|++|...|.-. .-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 4689998877542 2347999999999987655
No 278
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.13 E-value=34 Score=34.03 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002816 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEE 627 (877)
Q Consensus 588 ~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~ 627 (877)
.+..++..++.+....+..+......+..|.......+.+
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee 48 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE 48 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333
No 279
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=87.02 E-value=30 Score=33.27 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=10.9
Q ss_pred HhhcHHHHHHHHHHHHHHHHhHhh
Q 002816 505 LASSADQVAEIHKLQAMVQDLTDS 528 (877)
Q Consensus 505 ~~~i~~~~~ei~~l~~~~~~l~~~ 528 (877)
.++|+.+..++.--+..-+++...
T Consensus 235 ~Gria~Le~eLAmQKs~seElkss 258 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSS 258 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHh
Confidence 345555555554444444444333
No 280
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=87.01 E-value=0.33 Score=57.04 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=33.8
Q ss_pred ccccccccccc---cccccccchhhhHHhHHHHhccC---------CCCCCCCCCCCCC
Q 002816 823 LKCSICLERPK---EVVITKCYHLFCNPCVQKVTESR---------HRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~---~~~~~~c~h~~c~~C~~~~~~~~---------~~~Cp~c~~~~~~ 869 (877)
-.|.||+..-- ..+.+.|||+|-..|+...+..+ ...||+|..++.+
T Consensus 3487 DmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3487 DMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 46777765332 24567999999999998877653 2379999877643
No 281
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.76 E-value=0.33 Score=51.49 Aligned_cols=48 Identities=31% Similarity=0.809 Sum_probs=31.6
Q ss_pred ccccccccc-cccc---ccccccchhhhHHhHHHHhccC-----CCCCCC--CCCCCCC
Q 002816 822 ILKCSICLE-RPKE---VVITKCYHLFCNPCVQKVTESR-----HRKCPG--CAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~-~~~~---~~~~~c~h~~c~~C~~~~~~~~-----~~~Cp~--c~~~~~~ 869 (877)
...|.||+. .+.. -.+..|||.||..|+..++..+ ...||. |...+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 358999994 3332 1255899999999999888743 335654 4444443
No 282
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.58 E-value=31 Score=33.03 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=14.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 655 QITERDDYNIKLVLEGVRARQLQDALLMDKHMME 688 (877)
Q Consensus 655 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~ 688 (877)
.+..++..+..+.-+...+.+.+..+..+.+.+.
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 283
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.32 E-value=0.55 Score=46.93 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=36.4
Q ss_pred cccccccccccc--ccc--cccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE--VVI--TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 823 l~C~~C~~~~~~--~~~--~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
..||+|...... .-+ .+|||..|..|+.+... ....||.|+++...+.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccCc
Confidence 589999987632 223 37899999999999877 4556999998776544
No 284
>PRK04023 DNA polymerase II large subunit; Validated
Probab=86.25 E-value=0.38 Score=55.31 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=32.5
Q ss_pred ccccccccccccccccccch-----hhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYH-----LFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h-----~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
..|+.|+........-.||. .||..|-... ....||.|+.......
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~---~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV---EEDECEKCGREPTPYS 677 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC---CCCcCCCCCCCCCccc
Confidence 58999998764444446985 4899994432 3467999998876543
No 285
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=85.91 E-value=1.6 Score=40.25 Aligned_cols=63 Identities=17% Similarity=0.414 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHhcc--Ccccccccccccccccc-cccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 806 SSIIEELQQELREYR--EILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 806 ~~~~~~l~~~~~~l~--~~l~C~~C~~~~~~~~~-~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
...+..|..-+.+.- +...|.+|+...-..+. =.||-.+-..|+.+++.. ...||.|+..|++
T Consensus 163 ~ralaELe~YL~s~y~dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 163 PRALAELEFYLSSNYADNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 345666666655443 45689999986654443 367777777899999885 4569999888854
No 286
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=85.85 E-value=0.13 Score=29.14 Aligned_cols=22 Identities=23% Similarity=0.869 Sum_probs=11.2
Q ss_pred hHHhHHHHhccCCCCCCCCCCCC
Q 002816 845 CNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 845 c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
|..|-..... ....||.|+.+|
T Consensus 2 Cp~CG~~~~~-~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIED-DAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCC-cCcchhhhCCcC
Confidence 4444433322 345677777654
No 287
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.67 E-value=35 Score=32.81 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 002816 549 VLAARDLEYKAW 560 (877)
Q Consensus 549 ~~~l~~~~~~~~ 560 (877)
|..|......+.
T Consensus 110 i~nLk~se~~lk 121 (330)
T KOG2991|consen 110 ITNLKESEEKLK 121 (330)
T ss_pred HHhhHHHHHHHH
Confidence 444444433333
No 288
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=85.66 E-value=0.53 Score=40.56 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=27.7
Q ss_pred ccccccccccccc-----ccccccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-----VVITKCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 822 ~l~C~~C~~~~~~-----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.-.|..|+.+|.- .+...|+|.+|..|...........|.+|.
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~ 101 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQ 101 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhH
Confidence 4699999887632 334579999999997653222344688885
No 289
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.64 E-value=62 Score=35.69 Aligned_cols=9 Identities=33% Similarity=0.239 Sum_probs=5.1
Q ss_pred CCCCCCCCC
Q 002816 860 CPGCAASFS 868 (877)
Q Consensus 860 Cp~c~~~~~ 868 (877)
||.-..+|+
T Consensus 390 ~~~~~qpf~ 398 (861)
T KOG1899|consen 390 NITSAQPFS 398 (861)
T ss_pred ccccCCcCC
Confidence 665555554
No 290
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=85.54 E-value=0.62 Score=29.32 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=8.1
Q ss_pred CCCCCCCCCCC
Q 002816 856 RHRKCPGCAAS 866 (877)
Q Consensus 856 ~~~~Cp~c~~~ 866 (877)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34579999875
No 291
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=85.42 E-value=0.036 Score=42.48 Aligned_cols=33 Identities=18% Similarity=0.466 Sum_probs=17.5
Q ss_pred ccccccccccccccc----ccccchhhhHHhHHHHhc
Q 002816 822 ILKCSICLERPKEVV----ITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~ 854 (877)
...|.+|...|.-.. --.||++||..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 468999999995322 226999999999976553
No 292
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.30 E-value=45 Score=33.75 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=7.6
Q ss_pred HHHHHHHhcchHHHHHHHH
Q 002816 450 AEFRALVSSFPEDMSAMQR 468 (877)
Q Consensus 450 ~el~~~~~~l~~~~~~l~~ 468 (877)
..+...+..|..++..++.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~ 41 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKR 41 (310)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3344444444443333333
No 293
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.17 E-value=34 Score=32.24 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002816 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (877)
Q Consensus 593 l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 639 (877)
|.-+..++.+.+.++.....+|-.|...+.+....+......+..+.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~ 58 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQ 58 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455555555555555555555555555555544444444444433
No 294
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=85.14 E-value=0.76 Score=31.00 Aligned_cols=39 Identities=28% Similarity=0.638 Sum_probs=20.0
Q ss_pred cccccccccccccc---ccchhhhHHhHHHHhccCCC-CCCCC
Q 002816 825 CSICLERPKEVVIT---KCYHLFCNPCVQKVTESRHR-KCPGC 863 (877)
Q Consensus 825 C~~C~~~~~~~~~~---~c~h~~c~~C~~~~~~~~~~-~Cp~c 863 (877)
|.+|.+.....+.= .|+-.+=..|+..+++.+.. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777766544332 36656666888888886543 59988
No 295
>PF15616 TerY-C: TerY-C metal binding domain
Probab=84.82 E-value=0.38 Score=41.37 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=30.7
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
|....-||.|+..+.-.+. .||++||..= .....||-|+....
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g------~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDG------EGEVTCPWCGNEGS 116 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCC------CCCEECCCCCCeee
Confidence 3445899999997654444 8999999632 23467999987653
No 296
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.57 E-value=13 Score=34.73 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 712 LRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIEL 775 (877)
Q Consensus 712 ~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l 775 (877)
+.....+.+.+..++..++..++..+..+..++.+...+...+..+..++..+..++.++...+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3333344444444444455555555555555555555555555666666666666666654443
No 297
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.21 E-value=0.3 Score=47.23 Aligned_cols=54 Identities=19% Similarity=0.397 Sum_probs=30.4
Q ss_pred cCcccccccccccccccccc-cchh------hhHHh--HHHHhccCCCCCCCCCCCCCCCCCcc
Q 002816 820 REILKCSICLERPKEVVITK-CYHL------FCNPC--VQKVTESRHRKCPGCAASFSPNDVKP 874 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~-c~h~------~c~~C--~~~~~~~~~~~Cp~c~~~~~~~~~~~ 874 (877)
.....||+|...|+...+.+ =+.+ ||..= +...+. ....||.|+-.+...|+..
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F~~ 65 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDFEK 65 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCccccccccc
Confidence 45689999999997643321 1111 22210 111111 1347999999998877553
No 298
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=84.15 E-value=27 Score=33.94 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=36.4
Q ss_pred Ccccccccccccccccc-cccchhhhHHhHHHHhccC-CCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESR-HRKCPGCAAS 866 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~-~~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~ 866 (877)
-.++||+-+..+.+|++ ..|||+|=.+-+...+... ...||+-+.+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 35799999999999875 5899999998888877642 4568886655
No 299
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.72 E-value=58 Score=33.78 Aligned_cols=68 Identities=15% Similarity=0.349 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhccCccccccccccccc----ccccc--cchhhhHHhHHHHh
Q 002816 780 FAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREILKCSICLERPKE----VVITK--CYHLFCNPCVQKVT 853 (877)
Q Consensus 780 ~~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~C~~C~~~~~~----~~~~~--c~h~~c~~C~~~~~ 853 (877)
.--.++..++..|+..|....-... ..-..++.++ -.|..|...|.. |-.++ |+.+||-.|.+..+
T Consensus 434 hv~e~l~~ei~~L~eqle~e~~~~~--~le~ql~~~v------e~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katv 505 (542)
T KOG0993|consen 434 HVQEDLVKEIQSLQEQLEKERQSEQ--ELEWQLDDDV------EQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATV 505 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhc
Confidence 3344555666666666554432221 1123333333 368888776643 33344 99999999999887
Q ss_pred cc
Q 002816 854 ES 855 (877)
Q Consensus 854 ~~ 855 (877)
..
T Consensus 506 p~ 507 (542)
T KOG0993|consen 506 PS 507 (542)
T ss_pred cc
Confidence 64
No 300
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.63 E-value=6.6 Score=41.50 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=4.8
Q ss_pred HhHHHHhccCCC
Q 002816 847 PCVQKVTESRHR 858 (877)
Q Consensus 847 ~C~~~~~~~~~~ 858 (877)
.|+..++.+|.+
T Consensus 363 ~~~~Pl~~tR~r 374 (395)
T PF10267_consen 363 NCPLPLTRTRLR 374 (395)
T ss_pred cCCcHHhhccHH
Confidence 344444443333
No 301
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=83.59 E-value=0.34 Score=49.40 Aligned_cols=48 Identities=19% Similarity=0.458 Sum_probs=0.0
Q ss_pred cccccccccccc--------------c-----ccccccchhhhHHhHHHHhccC--------CCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPK--------------E-----VVITKCYHLFCNPCVQKVTESR--------HRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~--------------~-----~~~~~c~h~~c~~C~~~~~~~~--------~~~Cp~c~~~~~~ 869 (877)
.-.||+|...-. + .++-||||+.-..+..-|.... ...||+|..++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 468999975321 1 2345999998777877776532 2479999999864
No 302
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=83.45 E-value=0.096 Score=43.13 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=15.9
Q ss_pred ccccccccc--cccccccc--chhh--hHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 824 KCSICLERP--KEVVITKC--YHLF--CNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 824 ~C~~C~~~~--~~~~~~~c--~h~~--c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
.|++|...+ .++....| ||+| |.-=+-.......+.||.|+..+-.
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp -------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred cccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 799998865 34444555 8988 6644444444455789999876643
No 303
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=83.14 E-value=0.77 Score=51.64 Aligned_cols=46 Identities=37% Similarity=0.796 Sum_probs=35.9
Q ss_pred ccccccccccccc--cc--ccccchhhhHHhHHHHhccC------CCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE--VV--ITKCYHLFCNPCVQKVTESR------HRKCPGCAASF 867 (877)
Q Consensus 822 ~l~C~~C~~~~~~--~~--~~~c~h~~c~~C~~~~~~~~------~~~Cp~c~~~~ 867 (877)
.+.|.||.+.++. ++ -..|+|+|=..||..|.+++ .-.||.|....
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 5899999998864 32 23699999999999999853 33699998544
No 304
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=82.59 E-value=0.29 Score=48.85 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=31.5
Q ss_pred cccccccc-ccccc----cccccchhhhHHhHHHHhcc------CCCCCCCCCCCC
Q 002816 823 LKCSICLE-RPKEV----VITKCYHLFCNPCVQKVTES------RHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~-~~~~~----~~~~c~h~~c~~C~~~~~~~------~~~~Cp~c~~~~ 867 (877)
..|.+|.. .|+-. ..-.||++||..|....+.. ..+.|+.|...+
T Consensus 169 ~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 169 TECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred eecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 68999998 55432 23479999999998774321 234799996555
No 305
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.21 E-value=31 Score=33.09 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002816 593 LAAAEAEIADMRQKLEA 609 (877)
Q Consensus 593 l~~~~~~l~~l~~~~~~ 609 (877)
+..++.++..++.++..
T Consensus 95 lp~le~el~~l~~~l~~ 111 (206)
T PRK10884 95 VPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444433333
No 306
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=82.17 E-value=0.28 Score=28.84 Aligned_cols=23 Identities=30% Similarity=0.908 Sum_probs=11.9
Q ss_pred hhHHhHHHHhccCCCCCCCCCCCC
Q 002816 844 FCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 844 ~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
+|..|-.. +....+.||.|+.++
T Consensus 4 ~Cp~Cg~~-~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 4 FCPNCGAE-IDPDAKFCPNCGAKL 26 (26)
T ss_pred CCcccCCc-CCcccccChhhCCCC
Confidence 34444442 223456677777654
No 307
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.86 E-value=4.4 Score=34.18 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=11.9
Q ss_pred ccccccccc-ccccccccccchh
Q 002816 822 ILKCSICLE-RPKEVVITKCYHL 843 (877)
Q Consensus 822 ~l~C~~C~~-~~~~~~~~~c~h~ 843 (877)
...|.||+. .|.+. |||.
T Consensus 65 datC~IC~KTKFADG----~GH~ 83 (169)
T KOG3799|consen 65 DATCGICHKTKFADG----CGHN 83 (169)
T ss_pred Ccchhhhhhcccccc----cCcc
Confidence 469999987 44444 5554
No 308
>PF14353 CpXC: CpXC protein
Probab=81.40 E-value=0.76 Score=40.39 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=24.9
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccC--CCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~ 869 (877)
++||.|+..+.-.+-+.-.=..=..=....+... ...||.|+..|..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 6899999888643322111111112222233211 3579999998854
No 309
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.34 E-value=1e+02 Score=34.88 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=23.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 721 RLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSR 765 (877)
Q Consensus 721 ~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~ 765 (877)
..-++...+...++.+...+.++...-..+...++.+..++..+.
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555555555554
No 310
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.93 E-value=1.1e+02 Score=34.99 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 720 QRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSK 760 (877)
Q Consensus 720 ~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 760 (877)
..+..-+..+.......-.++..+...+..||..+.....+
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee 269 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEE 269 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 33333444444444444455666666677777766554444
No 311
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=80.70 E-value=0.26 Score=40.23 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCc
Q 002816 858 RKCPGCAASFSPNDVK 873 (877)
Q Consensus 858 ~~Cp~c~~~~~~~~~~ 873 (877)
+.||.|+..+.-.-+.
T Consensus 75 yyCP~Cgt~levE~~~ 90 (112)
T PF08882_consen 75 YYCPGCGTQLEVEAPP 90 (112)
T ss_pred EECCCCcceeEEccCC
Confidence 3799999876544433
No 312
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.52 E-value=80 Score=33.18 Aligned_cols=219 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 002816 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRAR 674 (877)
Q Consensus 595 ~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 674 (877)
.+...+.-|+.++..+...-......-..+..+.-.|......|+..+.+-+-.......+-.....++--....-+.+.
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle 298 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLE 298 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 675 QLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSL 754 (877)
Q Consensus 675 ~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l 754 (877)
.+ .++.....++.+...+...+..+....+.+..........++.+...+...+.........+.....+......-+
T Consensus 299 ~E--nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELi 376 (502)
T KOG0982|consen 299 KE--NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELI 376 (502)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CcchHHHHHHH
Q 002816 755 EESQSKVYKSRLTLMELQ-IELVKERFAKKRLEEDLEMGRRKVLRLQAQTE-GSSIIEELQQE 815 (877)
Q Consensus 755 ~~~~~~~~~l~~~l~~~~-~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~-~~~~~~~l~~~ 815 (877)
.++..++..++....... .-...-......+..++++|+..-..|...|. -.+.+-.+.-+
T Consensus 377 eelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q 439 (502)
T KOG0982|consen 377 EELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQ 439 (502)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHH
No 313
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.51 E-value=83 Score=33.35 Aligned_cols=43 Identities=9% Similarity=-0.041 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002816 659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFF 701 (877)
Q Consensus 659 ~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~ 701 (877)
+...+.++...+.+.++.+..+..+...++.++......+...
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rs 429 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRS 429 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444455555555555555555555544444433
No 314
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.76 E-value=1.4 Score=38.69 Aligned_cols=29 Identities=24% Similarity=0.622 Sum_probs=23.8
Q ss_pred cchhhhHHhHHHHhccCCCCCCCCCCCCCCCCC
Q 002816 840 CYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 840 c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
=.+-||..|-..... .||.|..++.....
T Consensus 26 ~~~~fC~kCG~~tI~----~Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 26 LREKFCSKCGAKTIT----SCPNCSTPIRGDYH 54 (158)
T ss_pred HHHHHHHHhhHHHHH----HCcCCCCCCCCcee
Confidence 468899999998877 59999999976543
No 315
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=79.69 E-value=0.84 Score=44.11 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=31.1
Q ss_pred Cccccccccccccccccc----ccchhh--hHHhHHHHhccCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVIT----KCYHLF--CNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~----~c~h~~--c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
..-.||+|+......++. .-|-.| |.-|...|..-|. +|-.|+..
T Consensus 184 ~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~-KC~nC~~t 234 (308)
T COG3058 184 SRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRV-KCSNCEQS 234 (308)
T ss_pred ccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHH-Hhcccccc
Confidence 345899999977654432 245555 9999999987433 68888643
No 316
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.33 E-value=49 Score=30.00 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 002816 781 AKKRLEEDLEMGRRKV 796 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l 796 (877)
++.+-+.++..|+.++
T Consensus 134 e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 134 ELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444445555555443
No 317
>PHA02768 hypothetical protein; Provisional
Probab=79.16 E-value=1.1 Score=31.82 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=25.0
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
+.|+.|+..|...-.+. +|. ..+. .+.+|+.|++.|..
T Consensus 6 y~C~~CGK~Fs~~~~L~-~H~-------r~H~-k~~kc~~C~k~f~~ 43 (55)
T PHA02768 6 YECPICGEIYIKRKSMI-THL-------RKHN-TNLKLSNCKRISLR 43 (55)
T ss_pred cCcchhCCeeccHHHHH-HHH-------HhcC-CcccCCcccceecc
Confidence 58999999998653331 222 1111 36689999999874
No 318
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=79.06 E-value=0.75 Score=54.61 Aligned_cols=48 Identities=23% Similarity=0.547 Sum_probs=32.1
Q ss_pred ccccccccccccccccccchhh-----hHHhHHHHhcc--CCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLF-----CNPCVQKVTES--RHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~-----c~~C~~~~~~~--~~~~Cp~c~~~~~~~ 870 (877)
..||-|+.......+-.||+.. |..|-...... ....||.|+.++...
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 6999999865444444588663 99997653221 134799999887654
No 319
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=79.01 E-value=64 Score=31.12 Aligned_cols=11 Identities=18% Similarity=-0.022 Sum_probs=4.5
Q ss_pred HHHHHHHhhhh
Q 002816 793 RRKVLRLQAQT 803 (877)
Q Consensus 793 ~~~l~~l~~~~ 803 (877)
...+..|+.+.
T Consensus 222 nah~~sLqwl~ 232 (254)
T KOG2196|consen 222 NAHMDSLQWLD 232 (254)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 320
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.85 E-value=28 Score=26.85 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002816 592 RLAAAEAEIADMRQKLEAFKR 612 (877)
Q Consensus 592 ~l~~~~~~l~~l~~~~~~~~~ 612 (877)
++..+-..|.-|+.+++.++.
T Consensus 12 KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 321
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.78 E-value=24 Score=26.07 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 002816 598 AEIADMRQKLEAFKR 612 (877)
Q Consensus 598 ~~l~~l~~~~~~~~~ 612 (877)
..|.-|+.+++.+..
T Consensus 18 dTI~LLQmEieELKE 32 (79)
T COG3074 18 DTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 322
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=78.67 E-value=0.59 Score=39.91 Aligned_cols=31 Identities=19% Similarity=0.604 Sum_probs=23.2
Q ss_pred cccccccccccccccccchhhhH-HhHHHHhcc
Q 002816 824 KCSICLERPKEVVITKCYHLFCN-PCVQKVTES 855 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~~c~h~~c~-~C~~~~~~~ 855 (877)
.|.||+ .++.-..+.||-.||. .|+..+..+
T Consensus 120 fCaVCG-~~S~ysC~~CG~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 120 FCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNET 151 (156)
T ss_pred hhhhcC-CCchhHHHhcCCceeechhhhhcccc
Confidence 699999 5555567789999976 788766553
No 323
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=78.34 E-value=75 Score=31.56 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002816 600 IADMRQKLEAFKRDMVSLSDA 620 (877)
Q Consensus 600 l~~l~~~~~~~~~~~~~l~~~ 620 (877)
...|+..+...-..+..+...
T Consensus 40 ~~~~~~~i~~aP~~~~~l~~~ 60 (240)
T PF12795_consen 40 AAEYQKQIDQAPKEIRELQKE 60 (240)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333333333
No 324
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=78.31 E-value=1.5 Score=27.77 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 002816 857 HRKCPGCAAS 866 (877)
Q Consensus 857 ~~~Cp~c~~~ 866 (877)
+..||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999875
No 325
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.00 E-value=68 Score=32.84 Aligned_cols=44 Identities=9% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 654 QQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANAS 697 (877)
Q Consensus 654 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~ 697 (877)
..+.++++.+.+.+...+.+.+.-..+.-+++.|...+..+...
T Consensus 84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~ 127 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEET 127 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444334433333333333333333
No 326
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.74 E-value=19 Score=33.40 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc--CcchHHHHHHHHHh
Q 002816 778 ERFAKKRLEEDLEMGRRKVLRLQAQTE--GSSIIEELQQELRE 818 (877)
Q Consensus 778 ~~~~~~~~~~el~~l~~~l~~l~~~~~--~~~~~~~l~~~~~~ 818 (877)
+...+..+..++..+..++..|..... ....+..+......
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~ 156 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKK 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 344555566666666666666654222 23344444444433
No 327
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=1.1e+02 Score=33.27 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELN 395 (877)
Q Consensus 358 ~l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 395 (877)
.+.+++..++.+-..+..+...++.+.-.+++.+..+.
T Consensus 153 rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 153 RLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 45556666665555566666666666555555554443
No 328
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=76.98 E-value=1.2 Score=43.66 Aligned_cols=47 Identities=6% Similarity=-0.114 Sum_probs=37.0
Q ss_pred HhccCcccccccccccccccccccchh-hhHHhHHHHhccCCCCCCCCCCC
Q 002816 817 REYREILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
+.+...+.|.+|+...-.++..+|||- ||-.|.... -...||+|...
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~ 385 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHN 385 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCcccccccc
Confidence 455666899999999888888899996 599998743 24679999654
No 329
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=76.85 E-value=18 Score=33.23 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCCCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHh
Q 002816 27 NPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCS 100 (877)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 100 (877)
.+|+|.......++..+-..+..|.+.+....+.+..|+..+...+...+.....+..++..+..+...+....
T Consensus 9 ~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 9 LPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677788888888888888888888888888888887777777776666666666666666665444
No 330
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.65 E-value=85 Score=32.14 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002816 778 ERFAKKRLEEDLEMGRRKVLR 798 (877)
Q Consensus 778 ~~~~~~~~~~el~~l~~~l~~ 798 (877)
+-.....+..++..++..+..
T Consensus 224 l~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 224 LADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555543
No 331
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.60 E-value=90 Score=31.58 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q 002816 634 EIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARI 708 (877)
Q Consensus 634 e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l 708 (877)
-++.-+.+.+.++.+...+..++-...+-+.+.......++.-+..+..+...++.++..+..+..+...+...+
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 333334444455555555555555555555555555555555555555555555555554444444433333333
No 332
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=76.52 E-value=1 Score=38.09 Aligned_cols=10 Identities=30% Similarity=1.029 Sum_probs=4.8
Q ss_pred ccchhhhHHh
Q 002816 839 KCYHLFCNPC 848 (877)
Q Consensus 839 ~c~h~~c~~C 848 (877)
+|+|.||..|
T Consensus 57 SCk~R~CP~C 66 (111)
T PF14319_consen 57 SCKNRHCPSC 66 (111)
T ss_pred cccCcCCCCC
Confidence 4444444444
No 333
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.47 E-value=70 Score=30.24 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002816 593 LAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (877)
Q Consensus 593 l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 639 (877)
|-.+..++.+....+......+..+...+.....++..+..++....
T Consensus 33 iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 33 IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 33444444444444444444444444444444444444444444433
No 334
>PF13166 AAA_13: AAA domain
Probab=76.21 E-value=1.7e+02 Score=34.71 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 002816 790 EMGRRKVLRL 799 (877)
Q Consensus 790 ~~l~~~l~~l 799 (877)
..+...+..+
T Consensus 462 ~~iN~~L~~~ 471 (712)
T PF13166_consen 462 DRINEELKRL 471 (712)
T ss_pred HHHHHHHHHh
Confidence 3333444444
No 335
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=76.19 E-value=2 Score=42.02 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=24.2
Q ss_pred ccccchhhhHHhHHHHhccC--------CCCCCCCCCCCCCC
Q 002816 837 ITKCYHLFCNPCVQKVTESR--------HRKCPGCAASFSPN 870 (877)
Q Consensus 837 ~~~c~h~~c~~C~~~~~~~~--------~~~Cp~c~~~~~~~ 870 (877)
+.||||+.-..-..=|...+ +..||+|...+...
T Consensus 375 F~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 375 FNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 45899997777777666532 34799998887543
No 336
>PLN02189 cellulose synthase
Probab=76.09 E-value=1.4 Score=51.77 Aligned_cols=45 Identities=22% Similarity=0.638 Sum_probs=34.1
Q ss_pred ccccccccccc----cc---ccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKE----VV---ITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~~~----~~---~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.|.||++...- -+ .--||--.|..|..---......||.|++.+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 89999987542 12 23588889999996555556789999999886
No 337
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.63 E-value=1.8 Score=35.83 Aligned_cols=28 Identities=29% Similarity=0.679 Sum_probs=20.8
Q ss_pred cchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 840 CYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 840 c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.-||..|-..... .||.|..++...+
T Consensus 26 l~eafcskcgeati~----qcp~csasirgd~ 53 (160)
T COG4306 26 LMEAFCSKCGEATIT----QCPICSASIRGDY 53 (160)
T ss_pred HHHHHHhhhchHHHh----cCCccCCcccccc
Confidence 356789999877666 4999988886544
No 338
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=75.23 E-value=51 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 762 YKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 762 ~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l 799 (877)
..+..++..++..+..++..-.++++++..++..|..+
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555544
No 339
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=74.96 E-value=4.1 Score=42.36 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc---CcchHHHHHHHH-HhccC--ccccccccccccccc----ccccchhhhHHhHH
Q 002816 781 AKKRLEEDLEMGRRKVLRLQAQTE---GSSIIEELQQEL-REYRE--ILKCSICLERPKEVV----ITKCYHLFCNPCVQ 850 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l~~~~~---~~~~~~~l~~~~-~~l~~--~l~C~~C~~~~~~~~----~~~c~h~~c~~C~~ 850 (877)
.+.++..+...|..++.+|..... .+.....+...+ -|+.. ..-||+|...|.-.. .--||-++|.+|..
T Consensus 133 rid~~~ve~nkLiiRl~rL~~~~~t~~d~~k~k~~EqsvVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k 212 (505)
T KOG1842|consen 133 RIDKYAVETNKLIIRLKRLEEGLPTEKDSVKRKRLEQSVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSK 212 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHhccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHH
Confidence 344455555555556655544332 333344444432 34433 468999999996432 23599999999987
Q ss_pred HHh
Q 002816 851 KVT 853 (877)
Q Consensus 851 ~~~ 853 (877)
-+.
T Consensus 213 ~iS 215 (505)
T KOG1842|consen 213 FIS 215 (505)
T ss_pred hcC
Confidence 554
No 340
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=74.57 E-value=99 Score=31.07 Aligned_cols=325 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Q 002816 500 ECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRV 579 (877)
Q Consensus 500 ~~~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~ 579 (877)
........|..+-....+.-.....+.....-++...............+....-....++.-...++........+
T Consensus 19 ~~~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q~l~kt~larsKLeelCRelQr~nk~~keE--- 95 (391)
T KOG1850|consen 19 DAEKVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQILLKTELARSKLEELCRELQRANKQTKEE--- 95 (391)
T ss_pred ccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002816 580 KTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITER 659 (877)
Q Consensus 580 ~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 659 (877)
....+...-.+-......++..+.+++..+..-......+......+...+..|...+......+......+. +
T Consensus 96 -----~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l 169 (391)
T KOG1850|consen 96 -----ACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-L 169 (391)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002816 660 DDYNIKLVLEGVRARQLQ--DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQ 737 (877)
Q Consensus 660 ~~~~~~l~~~~~~~~~~~--~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~ 737 (877)
...+..........-... .....+....-.....+..-++.....-..+..++.......+.+..-+.........+.
T Consensus 170 ~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK 249 (391)
T KOG1850|consen 170 WEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFK 249 (391)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CcchHHHHHHHH
Q 002816 738 KRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTE-GSSIIEELQQEL 816 (877)
Q Consensus 738 ~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~-~~~~~~~l~~~~ 816 (877)
..+..+...+..+....-.+...+......+-.+..+-..-...+..++..|.+|.+-+..|..... -...+..+..+
T Consensus 250 ~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~- 328 (391)
T KOG1850|consen 250 QEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQ- 328 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-
Q ss_pred HhccCccccccccccccccccccc
Q 002816 817 REYREILKCSICLERPKEVVITKC 840 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c 840 (877)
..-..-+.....|+..||
T Consensus 329 ------v~~k~~~~~la~pe~~~~ 346 (391)
T KOG1850|consen 329 ------VSAKNAMKDLATPESKPC 346 (391)
T ss_pred ------cchhhhhhhhcCcccccc
No 341
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.27 E-value=1.6e+02 Score=33.25 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 768 LMELQIELVKERFAKKRLEEDLEMGRRKVL 797 (877)
Q Consensus 768 l~~~~~~l~~~~~~~~~~~~el~~l~~~l~ 797 (877)
+-.....++.+...+..+.-.++++...+.
T Consensus 401 Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 401 LIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 333344445555555555555555555554
No 342
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.25 E-value=2.9 Score=37.03 Aligned_cols=47 Identities=19% Similarity=0.496 Sum_probs=33.5
Q ss_pred cccccccccccccccccccch-----hhhHHhHHHHhccC-CCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYH-----LFCNPCVQKVTESR-HRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h-----~~c~~C~~~~~~~~-~~~Cp~c~~~~~~ 869 (877)
...|=||++... +...||.- ..=.+|+.+|.... ...||.|+.+|.-
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 468999988754 34456632 12459999999854 5689999998854
No 343
>PLN02436 cellulose synthase A
Probab=74.00 E-value=1.7 Score=51.16 Aligned_cols=45 Identities=22% Similarity=0.693 Sum_probs=34.1
Q ss_pred cccccccccccc-------cccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKEV-------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~~~~-------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.|-||++..--. ..--||-..|..|..---......||.|+..+.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 899999876321 123588889999996555556779999999886
No 344
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.76 E-value=2.4e+02 Score=35.05 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=6.9
Q ss_pred chHHHHHHHHHhc
Q 002816 807 SIIEELQQELREY 819 (877)
Q Consensus 807 ~~~~~l~~~~~~l 819 (877)
.....+..++.++
T Consensus 443 ~w~~~~~~~l~~l 455 (1109)
T PRK10929 443 SYPLEIAQDLRRL 455 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555544
No 345
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.70 E-value=1 Score=42.94 Aligned_cols=23 Identities=30% Similarity=0.924 Sum_probs=17.9
Q ss_pred cccccccccchhhhHHhHHHHhc
Q 002816 832 PKEVVITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 832 ~~~~~~~~c~h~~c~~C~~~~~~ 854 (877)
-..-.++.|+|+||..|......
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc
Confidence 55556789999999999976533
No 346
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=1.4 Score=46.92 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=23.7
Q ss_pred ccccccccccc-----cccccccchhhhHHhHHHHhc
Q 002816 823 LKCSICLERPK-----EVVITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 823 l~C~~C~~~~~-----~~~~~~c~h~~c~~C~~~~~~ 854 (877)
..||.|...+- ..++-+|||-||+.|...|..
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~ 343 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT 343 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhh
Confidence 57999976542 234446999999999988766
No 348
>PLN02939 transferase, transferring glycosyl groups
Probab=72.81 E-value=2.2e+02 Score=34.38 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHH
Q 002816 459 FPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVL 494 (877)
Q Consensus 459 l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~l 494 (877)
+...+..++..+..+.+....+..+..+...+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (977)
T PLN02939 238 LKDDIQFLKAELIEVAETEERVFKLEKERSLLDASL 273 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555554444444433
No 349
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=72.78 E-value=1.7 Score=43.20 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=8.7
Q ss_pred ccccccccccc
Q 002816 824 KCSICLERPKE 834 (877)
Q Consensus 824 ~C~~C~~~~~~ 834 (877)
.||+|++..+.
T Consensus 17 lCPVCGDkVSG 27 (475)
T KOG4218|consen 17 LCPVCGDKVSG 27 (475)
T ss_pred ccccccCcccc
Confidence 69999987764
No 350
>PRK00846 hypothetical protein; Provisional
Probab=72.71 E-value=43 Score=26.04 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002816 752 GSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTE 804 (877)
Q Consensus 752 ~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~ 804 (877)
.++..++..+.-...-+.++...+......+.++...+..+..++..+.+.+.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~ 65 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLF 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 33344444444444444444444444455566667777777777777765543
No 351
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.58 E-value=1.6 Score=36.51 Aligned_cols=14 Identities=36% Similarity=0.987 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSPN 870 (877)
Q Consensus 857 ~~~Cp~c~~~~~~~ 870 (877)
+..||.|+..|...
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 45688888877655
No 352
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=71.56 E-value=1.9 Score=33.96 Aligned_cols=26 Identities=31% Similarity=0.837 Sum_probs=15.6
Q ss_pred hhHHhHHHHhcc---CCCCCCCCCCCCCC
Q 002816 844 FCNPCVQKVTES---RHRKCPGCAASFSP 869 (877)
Q Consensus 844 ~c~~C~~~~~~~---~~~~Cp~c~~~~~~ 869 (877)
.|-.|....... ....||.|+++|.+
T Consensus 64 iCGvC~~~LT~~EY~~~~~Cp~C~spFNp 92 (105)
T COG4357 64 ICGVCRKLLTRAEYGMCGSCPYCQSPFNP 92 (105)
T ss_pred EhhhhhhhhhHHHHhhcCCCCCcCCCCCc
Confidence 344555443321 13469999999964
No 353
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.18 E-value=61 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002816 780 FAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 780 ~~~~~~~~el~~l~~~l~~l~ 800 (877)
.+...+..+-..|+..+..+.
T Consensus 36 EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 36 EENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555554
No 354
>PF12773 DZR: Double zinc ribbon
Probab=71.08 E-value=3.3 Score=29.07 Aligned_cols=41 Identities=27% Similarity=0.681 Sum_probs=23.3
Q ss_pred ccccccccccccccccchhhhHHhHHHHh--ccCCCCCCCCCCCCCCCC
Q 002816 825 CSICLERPKEVVITKCYHLFCNPCVQKVT--ESRHRKCPGCAASFSPND 871 (877)
Q Consensus 825 C~~C~~~~~~~~~~~c~h~~c~~C~~~~~--~~~~~~Cp~c~~~~~~~~ 871 (877)
|+.|+..+.. +-.||..|-.... ......||.|+..+....
T Consensus 1 Cp~Cg~~~~~------~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 1 CPHCGTPNPD------DAKFCPHCGTPLPPPDQSKKICPNCGAENPPNA 43 (50)
T ss_pred CCCcCCcCCc------cccCChhhcCChhhccCCCCCCcCCcCCCcCCc
Confidence 5666665432 3455666655554 323457888887765443
No 355
>PLN02195 cellulose synthase A
Probab=71.05 E-value=2.7 Score=49.19 Aligned_cols=46 Identities=20% Similarity=0.551 Sum_probs=34.2
Q ss_pred cccccccccccc-------ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE-------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~-------~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
-.|-||++...- ...--||...|..|..=--+.....||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 579999985532 2234789999999995433445779999999997
No 356
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=70.97 E-value=2.2 Score=50.37 Aligned_cols=45 Identities=24% Similarity=0.711 Sum_probs=33.5
Q ss_pred ccccccccccc-------ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKE-------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~~~-------~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.|-||++..-- ...-.||-..|..|..=--+.....||.|++.+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 89999987532 1233688889999995433445779999999886
No 357
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=70.91 E-value=2.8e+02 Score=34.69 Aligned_cols=12 Identities=17% Similarity=0.013 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCC
Q 002816 860 CPGCAASFSPND 871 (877)
Q Consensus 860 Cp~c~~~~~~~~ 871 (877)
+-++..||+.=|
T Consensus 978 ~l~lDEp~~~lD 989 (1047)
T PRK10246 978 SLFLDEGFGTLD 989 (1047)
T ss_pred EEEEeCCCCcCC
Confidence 445555555443
No 358
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=70.19 E-value=2.1 Score=47.46 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=23.7
Q ss_pred ccccccccccccc---------cccccchhhhHHhHHHHh
Q 002816 823 LKCSICLERPKEV---------VITKCYHLFCNPCVQKVT 853 (877)
Q Consensus 823 l~C~~C~~~~~~~---------~~~~c~h~~c~~C~~~~~ 853 (877)
-.|..|...|..- ..-.||++||..|.....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 3699999988531 133799999999997654
No 359
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=70.07 E-value=1.5 Score=42.29 Aligned_cols=47 Identities=26% Similarity=0.561 Sum_probs=25.9
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
++|+-|+..+.+.++..-|-+||..=+...+. .+|..|...+....|
T Consensus 61 LkCs~C~~qL~drCFsR~~s~yCkedFfKrfG---TKCsaC~~GIpPtqV 107 (383)
T KOG4577|consen 61 LKCSDCHDQLADRCFSREGSVYCKEDFFKRFG---TKCSACQEGIPPTQV 107 (383)
T ss_pred cchhhhhhHHHHHHhhcCCceeehHHHHHHhC---CcchhhcCCCChHHH
Confidence 44555555555555555555555544333333 379999887766543
No 360
>PRK04406 hypothetical protein; Provisional
Probab=69.94 E-value=50 Score=25.64 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 755 EESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQA 801 (877)
Q Consensus 755 ~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~ 801 (877)
..++..+.-....+.++...+......+..+...+..+..++..+++
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333333333333333344445555666666666666554
No 361
>PHA02862 5L protein; Provisional
Probab=69.85 E-value=4.6 Score=34.94 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=33.1
Q ss_pred ccccccccccccccccccch-----hhhHHhHHHHhccC-CCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYH-----LFCNPCVQKVTESR-HRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h-----~~c~~C~~~~~~~~-~~~Cp~c~~~~~~ 869 (877)
-.|=||+..-.+. ..||+- ..-..|+..|+... ...||.|+.+|.-
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3688998876544 456642 23569999999754 5689999998853
No 362
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=69.40 E-value=2.2 Score=43.37 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=24.6
Q ss_pred Cccccccccccccccc--ccccchhhhHHhHHHHh
Q 002816 821 EILKCSICLERPKEVV--ITKCYHLFCNPCVQKVT 853 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~--~~~c~h~~c~~C~~~~~ 853 (877)
....|+||+-.|.... +.-|...+|..|+-...
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheeccc
Confidence 3478999998876533 34689999999987654
No 363
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=69.38 E-value=1.4 Score=35.32 Aligned_cols=28 Identities=21% Similarity=0.492 Sum_probs=20.0
Q ss_pred Ccccccccccccccccc--cccchhhhHHh
Q 002816 821 EILKCSICLERPKEVVI--TKCYHLFCNPC 848 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~--~~c~h~~c~~C 848 (877)
.+|+|+.|+-+....-. -+=|+.+|..|
T Consensus 69 DEFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 69 DEFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred CceeeeeeeeEechhhhccccCCCEecccc
Confidence 45899999877654322 24588999988
No 364
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=68.77 E-value=1.3e+02 Score=30.06 Aligned_cols=150 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HhHhhHHHHHHHHHHHhccCCChhh-HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002816 524 DLTDSNLELKLILDMYRRESTDSRD-VLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIAD 602 (877)
Q Consensus 524 ~l~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~~~~l~~ 602 (877)
.+...+.+++.....+......... ..-+..+...-......+...++ +..+.. .+...+..+..++..
T Consensus 111 ~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e-------~~~iE~---~l~~ai~~~~~~~~~ 180 (267)
T PF10234_consen 111 DLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLE-------LNEIEK---ALKEAIKAVQQQLQQ 180 (267)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcC-------HHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 603 MRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLM 682 (877)
Q Consensus 603 l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 682 (877)
++..+..+..+-..|...|.....+++.....+..++.---..-.+...++.++..+-...-.--..+.-++..+.....
T Consensus 181 ~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 181 TQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred H
Q 002816 683 D 683 (877)
Q Consensus 683 e 683 (877)
.
T Consensus 261 ~ 261 (267)
T PF10234_consen 261 R 261 (267)
T ss_pred H
No 365
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=68.70 E-value=69 Score=26.83 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 774 ELVKERFAKKRLEEDLEMGRRKVLR 798 (877)
Q Consensus 774 ~l~~~~~~~~~~~~el~~l~~~l~~ 798 (877)
.+..+......+..++..++.+|..
T Consensus 78 ~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 78 RIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444433
No 366
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=68.63 E-value=1.2 Score=50.15 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=32.7
Q ss_pred ccccccccccccc--cccccchhhhHHhHHHHhccC-----CCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEV--VITKCYHLFCNPCVQKVTESR-----HRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~~--~~~~c~h~~c~~C~~~~~~~~-----~~~Cp~c~~~~~ 868 (877)
-.|..|.....+. +...|||.||..|+..|+-.. .-+||+|+....
T Consensus 230 ~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 230 EMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred hhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 4799998877653 355899999999999996211 236777765443
No 367
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.58 E-value=2e+02 Score=31.99 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 774 ELVKERFAKKRLEEDLEMGRRKVLR 798 (877)
Q Consensus 774 ~l~~~~~~~~~~~~el~~l~~~l~~ 798 (877)
++......+..++..+...+..+..
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333444444444444444444433
No 368
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=68.31 E-value=3.1 Score=47.73 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=35.2
Q ss_pred cCccccccccccccccc-ccccchhhhHHhHHHHhcc---CCCCCCCCCCCCCCCCC
Q 002816 820 REILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTES---RHRKCPGCAASFSPNDV 872 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~-~~~c~h~~c~~C~~~~~~~---~~~~Cp~c~~~~~~~~~ 872 (877)
+--|.|++|+.++.-|+ ...|.|.=|++-..-.... ....||+|.+.+...++
T Consensus 304 ~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 304 RVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred eeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 33479999999887765 3467777666544322222 23589999998877664
No 369
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=67.84 E-value=2.3 Score=33.95 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=15.0
Q ss_pred ccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 837 ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 837 ~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.++|||+|-.- ....+. .||.|+..
T Consensus 5 CtrCG~vf~~g-~~~il~----GCp~CG~n 29 (112)
T COG3364 5 CTRCGEVFDDG-SEEILS----GCPKCGCN 29 (112)
T ss_pred ecccccccccc-cHHHHc----cCccccch
Confidence 45788888553 222323 58888753
No 370
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.83 E-value=1.3e+02 Score=29.78 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.4
Q ss_pred cHHHHHHHHHH
Q 002816 508 SADQVAEIHKL 518 (877)
Q Consensus 508 i~~~~~ei~~l 518 (877)
|+.+...+..+
T Consensus 122 Ia~L~rqlq~l 132 (258)
T PF15397_consen 122 IANLVRQLQQL 132 (258)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 371
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.76 E-value=2e+02 Score=31.87 Aligned_cols=22 Identities=5% Similarity=0.270 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002816 591 QRLAAAEAEIADMRQKLEAFKR 612 (877)
Q Consensus 591 ~~l~~~~~~l~~l~~~~~~~~~ 612 (877)
..+..++.++..+..++..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 372
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=67.75 E-value=58 Score=25.56 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002816 782 KKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 782 ~~~~~~el~~l~~~l~~l~ 800 (877)
+..|+++|.+|+..+...|
T Consensus 59 K~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 59 KQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3466777788877776544
No 373
>PRK02119 hypothetical protein; Provisional
Probab=67.46 E-value=55 Score=25.24 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 753 SLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQA 801 (877)
Q Consensus 753 ~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~ 801 (877)
++..++..+.-....+.++...+......+..+...+..+..++..+++
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333333333334444444444444455555666666666666553
No 374
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.33 E-value=1.1e+02 Score=28.83 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHhhh
Q 002816 510 DQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSL 570 (877)
Q Consensus 510 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l 570 (877)
.+...+..+...+..+...+..++..+...........+...+...+..+..++..+..++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555544444443334444444444554444444443
No 375
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.17 E-value=54 Score=24.97 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 002816 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCK 264 (877)
Q Consensus 206 ~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~ 264 (877)
+..+..++..++.+..++......+..+....+.....+...-..+..+..+++.+..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444444444444444444444444444444444
No 376
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.96 E-value=1.7e+02 Score=32.19 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 578 RVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT 657 (877)
Q Consensus 578 ~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~ 657 (877)
++..+......+..+......+...|...+...+.+...+..++......+..++.++...+ ...+.++..+...+.
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr---~NYE~QLs~MSEHLa 497 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR---RNYEEQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHH
Q 002816 658 ERDDYNIKLVLEGVRAR 674 (877)
Q Consensus 658 ~~~~~~~~l~~~~~~~~ 674 (877)
.+.+.+..-..++..++
T Consensus 498 smNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 498 SMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHh
No 377
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=66.57 E-value=3 Score=49.14 Aligned_cols=46 Identities=22% Similarity=0.619 Sum_probs=34.2
Q ss_pred cccccccccccc-------ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE-------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~-------~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
-.|-||++...- ...-.||-..|..|..=-.......||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 479999987532 1233688889999996544455779999999886
No 378
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=66.57 E-value=2.1e+02 Score=31.60 Aligned_cols=25 Identities=0% Similarity=-0.017 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 775 LVKERFAKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 775 l~~~~~~~~~~~~el~~l~~~l~~l 799 (877)
+..++.+..-.+..+..+-.++.+.
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555444
No 379
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=66.29 E-value=3.1 Score=34.82 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=19.9
Q ss_pred cCccccccccccc----cccccc-ccchhhhHH
Q 002816 820 REILKCSICLERP----KEVVIT-KCYHLFCNP 847 (877)
Q Consensus 820 ~~~l~C~~C~~~~----~~~~~~-~c~h~~c~~ 847 (877)
.....|+.|+..| +.|++- .||+.|=..
T Consensus 7 GtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred CCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 3446899999888 446644 699888554
No 380
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.21 E-value=2.5e+02 Score=32.40 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=7.7
Q ss_pred HHHHHHHhHHhHHHHHH
Q 002816 479 DIHILRADVLSLTNVLE 495 (877)
Q Consensus 479 ~l~~l~~~~~~~~~~l~ 495 (877)
.+..++-.+..++.++.
T Consensus 335 KVrt~KYLLgELkaLVa 351 (861)
T PF15254_consen 335 KVRTLKYLLGELKALVA 351 (861)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444445555543
No 381
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=66.09 E-value=2.1 Score=49.16 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=29.6
Q ss_pred Cccccccccccccccc-----cc--ccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVV-----IT--KCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~-----~~--~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
..+.|..|+..+..|- ++ .-|..+|..|-.. ...+..||.|+..
T Consensus 434 ~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~--~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ--EPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC--CCCCCCCCCCCCC
Confidence 3467888888776541 11 3466779999755 2346789999876
No 382
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=66.03 E-value=3.8 Score=29.74 Aligned_cols=15 Identities=33% Similarity=1.052 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
++++||.|+.++..+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 467899999998764
No 383
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=65.96 E-value=10 Score=32.46 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=43.7
Q ss_pred CCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHh
Q 002816 32 SSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCS 100 (877)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 100 (877)
.+......+.....+...-.+.|-.....|..|...+..++..+...+..+..+..+-.+|..-|..+-
T Consensus 30 eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE 98 (116)
T PF05064_consen 30 ELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE 98 (116)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666677778888999999999999999999999999999999998888877776443
No 384
>PLN02400 cellulose synthase
Probab=65.79 E-value=2.7 Score=49.71 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=33.1
Q ss_pred ccccccccccc-------ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKE-------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~~~-------~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.|-||++..-- ...-.||-..|+.|..=--+.....||.|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 89999987632 1233688889999995433345678999999886
No 385
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=65.36 E-value=1.8e+02 Score=30.39 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhcc
Q 002816 753 SLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYR 820 (877)
Q Consensus 753 ~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~ 820 (877)
+.+..+.+-.....-+.++....+.+-.-+.+.-..+..|+..++.|+++.+ .++.+..++..++
T Consensus 334 qWERaQ~eq~q~ar~lqeLR~~~delct~versavs~asLrseLeglgpvKP---ilEel~Rq~~~~r 398 (558)
T PF15358_consen 334 QWERAQREQAQTARGLQELRGRADELCTMVERSAVSVASLRSELEGLGPVKP---ILEELGRQLQNSR 398 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhHHHHHHHHhhcccCcch---HHHHHHHHHHhhc
Confidence 3333333333333444455445555555566666777888888888888764 3445555554444
No 386
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.34 E-value=91 Score=26.97 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 768 LMELQIELVKERFAKKRLEEDLEMGRRKVLRLQA 801 (877)
Q Consensus 768 l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~ 801 (877)
+.-++..+..++.....++..+..+...+..+-.
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555555554443
No 387
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.10 E-value=1.5e+02 Score=29.37 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 002816 713 RFCLDQAQRL 722 (877)
Q Consensus 713 ~~~~~~~~~l 722 (877)
..+..++..+
T Consensus 92 ~eLksQL~RM 101 (305)
T PF15290_consen 92 DELKSQLARM 101 (305)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 388
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=65.02 E-value=46 Score=28.05 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002816 781 AKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~~l 799 (877)
+...++.+-..|+..+..+
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444445555555554
No 389
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=64.98 E-value=2 Score=25.19 Aligned_cols=13 Identities=54% Similarity=1.053 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFS 868 (877)
Q Consensus 856 ~~~~Cp~c~~~~~ 868 (877)
++..||.|+..|.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
Confidence 4668999988875
No 390
>PRK05978 hypothetical protein; Provisional
Probab=64.88 E-value=3.7 Score=36.46 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=22.7
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+||-|++ ||.|= .+++ -...||.|+..|...
T Consensus 34 grCP~CG~----------G~LF~-----g~Lk-v~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLK-PVDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Ccccc-----cccc-cCCCccccCCccccC
Confidence 58998887 66662 3444 245699999999765
No 391
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.83 E-value=2.6e+02 Score=33.26 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002816 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVL 668 (877)
Q Consensus 635 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 668 (877)
.......++-+..++..+..++...+..+..++.
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555544444
No 392
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=64.81 E-value=1.8 Score=37.05 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=15.3
Q ss_pred ccccccccccccccccccchhhhHHhH
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCV 849 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~ 849 (877)
..||.|+.+++. +-|-+||-.|-
T Consensus 29 ~hCp~Cg~PLF~----KdG~v~CPvC~ 51 (131)
T COG1645 29 KHCPKCGTPLFR----KDGEVFCPVCG 51 (131)
T ss_pred hhCcccCCccee----eCCeEECCCCC
Confidence 389999887654 45666655554
No 393
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.64 E-value=2.9 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=15.8
Q ss_pred hHHhHHHHhc---cCCCCCCCCCCCCCC
Q 002816 845 CNPCVQKVTE---SRHRKCPGCAASFSP 869 (877)
Q Consensus 845 c~~C~~~~~~---~~~~~Cp~c~~~~~~ 869 (877)
|..|....+. ++.++||.|+.+.+.
T Consensus 1159 C~~CkH~a~~~EIs~y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1159 CPRCKHRAHQHEISKYNCCPLCHSMESF 1186 (1189)
T ss_pred ccccccccccccccccccCccccChhhc
Confidence 5555433332 356799999988754
No 394
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=64.50 E-value=2.2 Score=48.63 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=0.0
Q ss_pred ccccccccccccccccccchh-----hhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHL-----FCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~-----~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..|+-|+..-....+-.||-. +|..|-..... ..||.|+......
T Consensus 656 r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~~~---~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 656 RRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEVEE---DECPKCGRETTSY 705 (900)
T ss_dssp -----------------------------------------------------
T ss_pred ccCcccCCcchhhcCcccCCccccceeccccccccCc---cccccccccCccc
Confidence 589999875444444457644 79999876543 4799999876543
No 395
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=63.80 E-value=2.3 Score=43.72 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred ccccccccccccc-------------c-cccccchhhhHHhHHHHhc--cCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-------------V-VITKCYHLFCNPCVQKVTE--SRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~-------------~-~~~~c~h~~c~~C~~~~~~--~~~~~Cp~c~~~ 866 (877)
...||+=+..+.- | |.+.|||++-+.=--.... ...+.||+|+..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCcccc
Confidence 3688887554321 2 3468999987632211111 136789999864
No 396
>PRK00420 hypothetical protein; Validated
Probab=63.53 E-value=2.2 Score=35.77 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.5
Q ss_pred ccccccccccc
Q 002816 823 LKCSICLERPK 833 (877)
Q Consensus 823 l~C~~C~~~~~ 833 (877)
-.||+|+.++.
T Consensus 24 ~~CP~Cg~pLf 34 (112)
T PRK00420 24 KHCPVCGLPLF 34 (112)
T ss_pred CCCCCCCCcce
Confidence 48999987665
No 397
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=63.14 E-value=1.4 Score=33.63 Aligned_cols=36 Identities=25% Similarity=0.587 Sum_probs=27.9
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
..|-||......| |-.||..|...- -.|-+|++.+-
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~K-----giCAMCGKki~ 90 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYKK-----GICAMCGKKIL 90 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhhh-----hHHHHhhhHhh
Confidence 4799999888877 888999997542 35999987663
No 398
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.11 E-value=81 Score=32.14 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHh
Q 002816 48 QKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCS 100 (877)
Q Consensus 48 ~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 100 (877)
....+.++.+......+.++-++|..-+...+..+..++.....+...++.|.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555555555555556666666666666666666666666666666554
No 399
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.10 E-value=4.4 Score=45.05 Aligned_cols=40 Identities=20% Similarity=0.492 Sum_probs=31.0
Q ss_pred ccccccccccccccc--ccccchhhhHHhHHHHhccCCCCCCC
Q 002816 822 ILKCSICLERPKEVV--ITKCYHLFCNPCVQKVTESRHRKCPG 862 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~--~~~c~h~~c~~C~~~~~~~~~~~Cp~ 862 (877)
.+.|.+|+-...... ...|||+.-.+|...|++++. .||.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCC
Confidence 367888877666543 458999999999999999654 6874
No 400
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.78 E-value=4.4 Score=26.70 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFS 868 (877)
Q Consensus 857 ~~~Cp~c~~~~~ 868 (877)
...||+|+.+|+
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 568999999996
No 401
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.73 E-value=61 Score=24.68 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 755 EESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 755 ~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~ 800 (877)
..++..+.-....+.++...+......+.+++..+..+..++..+.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333333333333444444455555555666666666554
No 402
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=62.25 E-value=5.6 Score=37.09 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=22.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.||.|+..|+-- .-+ . ..+.||.|+.++..-|
T Consensus 117 ~Y~Cp~C~~rytf~-----------eA~----~-~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 117 FFFCPNCHIRFTFD-----------EAM----E-YGFRCPQCGEMLEEYD 150 (178)
T ss_pred EEECCCCCcEEeHH-----------HHh----h-cCCcCCCCCCCCeecc
Confidence 47899888777522 111 1 2578999999886543
No 403
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.17 E-value=3.5 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.670 Sum_probs=16.9
Q ss_pred hhHHhHHHHhccC-------CCCCCCCCCCC
Q 002816 844 FCNPCVQKVTESR-------HRKCPGCAASF 867 (877)
Q Consensus 844 ~c~~C~~~~~~~~-------~~~Cp~c~~~~ 867 (877)
.|..|-..+..+- +..||.|+-.+
T Consensus 153 lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 153 LCPFCDKEYKDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CCHHHHHHhcCccccccccccccCcccCCCe
Confidence 3999988776542 34899998643
No 404
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=62.09 E-value=7.6 Score=35.45 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.||.|+..|+---.+ . ..+.||.|+.++..-|
T Consensus 109 ~Y~Cp~c~~r~tf~eA~---------------~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAM---------------E-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred eEECCCCCcEeeHHHHH---------------H-cCCcCCCCCCEeeecc
Confidence 37899888777522111 1 2578999999876544
No 405
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.72 E-value=3.4e+02 Score=32.32 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=8.0
Q ss_pred ccchhhhHHhHHHHh
Q 002816 839 KCYHLFCNPCVQKVT 853 (877)
Q Consensus 839 ~c~h~~c~~C~~~~~ 853 (877)
.||.+|+...+-..+
T Consensus 542 g~GKTtva~nLA~~l 556 (726)
T PRK09841 542 DSGKTFVSSTLAAVI 556 (726)
T ss_pred CCCHHHHHHHHHHHH
Confidence 466666554444443
No 406
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=60.88 E-value=4.2 Score=32.50 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=23.1
Q ss_pred cccccccccccc-----------cccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 824 KCSICLERPKEV-----------VITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 824 ~C~~C~~~~~~~-----------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
.|+.|....-+. ..+++|-.+|..+ +.+.|+.|+..|
T Consensus 51 gCp~CrvG~le~~ft~~Gi~~AI~fFPiGilcc~~~-------r~~rC~nCG~~f 98 (98)
T PF10164_consen 51 GCPACRVGVLEDSFTCCGILCAIFFFPIGILCCLAM-------RERRCSNCGATF 98 (98)
T ss_pred CCCCCceeeecccccHHHHHHHHHHHhhHHHHhhhc-------CccccCCCCccC
Confidence 688886544322 2346666655533 457799999866
No 407
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=60.80 E-value=5.7 Score=44.58 Aligned_cols=51 Identities=20% Similarity=0.460 Sum_probs=37.1
Q ss_pred cccccccc--ccccccccccchh-----hhHHhHHHHhccC-CCCCCCCCCCCCCCCCc
Q 002816 823 LKCSICLE--RPKEVVITKCYHL-----FCNPCVQKVTESR-HRKCPGCAASFSPNDVK 873 (877)
Q Consensus 823 l~C~~C~~--~~~~~~~~~c~h~-----~c~~C~~~~~~~~-~~~Cp~c~~~~~~~~~~ 873 (877)
-.|-||.- ...+|...||..+ .-.+|+..|+... ..+|..|+.+|.-+++.
T Consensus 13 ~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 13 RSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred hhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 48999964 3445777777432 2569999999854 56899999999877654
No 408
>PRK02793 phi X174 lysis protein; Provisional
Probab=60.52 E-value=76 Score=24.42 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002816 753 SLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQ 802 (877)
Q Consensus 753 ~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~ 802 (877)
++..++..+.-....+.++...+......+..+...+..+..++..+++.
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33333333333333444444444444445555666666666666666543
No 409
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=60.34 E-value=1.2 Score=40.71 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=27.8
Q ss_pred Ccccccccccccccccc----cc------------cchhhhHHh-HHHHhcc----CCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVI----TK------------CYHLFCNPC-VQKVTES----RHRKCPGCAASFSP 869 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~----~~------------c~h~~c~~C-~~~~~~~----~~~~Cp~c~~~~~~ 869 (877)
..+.|-+|+..|.-..+ ++ ||..|=... ++++.++ ++++|..|.+.|.+
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq 185 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ 185 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence 35899999998864222 23 333332211 2222221 46789999998875
No 410
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=60.31 E-value=3.8 Score=28.73 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=17.4
Q ss_pred cccccccccccccccccchhhhHH
Q 002816 824 KCSICLERPKEVVITKCYHLFCNP 847 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~~c~h~~c~~ 847 (877)
+|..|......-+.+.|||++|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 488888655544667899999954
No 411
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=60.18 E-value=8.5 Score=35.43 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=20.8
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
+.||.|+-.++- =..|. ..+.||.|+..+...|
T Consensus 114 y~C~~~~~r~sf----------deA~~------~~F~Cp~Cg~~L~~~d 146 (176)
T COG1675 114 YVCPNCHVKYSF----------DEAME------LGFTCPKCGEDLEEYD 146 (176)
T ss_pred eeCCCCCCcccH----------HHHHH------hCCCCCCCCchhhhcc
Confidence 788888776641 11221 1367999998876554
No 412
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=59.99 E-value=8.9 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.794 Sum_probs=13.8
Q ss_pred hhHHhHHHHhccC-------CCCCCCCCCCCC
Q 002816 844 FCNPCVQKVTESR-------HRKCPGCAASFS 868 (877)
Q Consensus 844 ~c~~C~~~~~~~~-------~~~Cp~c~~~~~ 868 (877)
+|..|...+.... ...|+.|+-.++
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEE
Confidence 4777877765432 237999987764
No 413
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=59.75 E-value=19 Score=33.61 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=32.6
Q ss_pred CcccccccccccccccccccchhhhH-HhHHHHhccC--CCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCN-PCVQKVTESR--HRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~-~C~~~~~~~~--~~~Cp~c~~~~~~~ 870 (877)
..+.|..|+. ..+..+.|||-+-. ..-...+... +..|..|+..++.+
T Consensus 86 ~~~~CiSCG~--~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn 136 (189)
T PF05766_consen 86 AGKPCISCGR--KHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGN 136 (189)
T ss_pred cCCCcccCCC--cCCCCcccccccccccCcccccChhhHhHcCCccccccccC
Confidence 4688999999 33567899999865 3444333322 35799998777644
No 414
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=59.64 E-value=3.3 Score=30.88 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=22.3
Q ss_pred Cccccc--cccccccc-------cccc-ccchhhhHHhHHHHhc
Q 002816 821 EILKCS--ICLERPKE-------VVIT-KCYHLFCNPCVQKVTE 854 (877)
Q Consensus 821 ~~l~C~--~C~~~~~~-------~~~~-~c~h~~c~~C~~~~~~ 854 (877)
....|| -|...+.. .+.- .|||.||..|...|+.
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC
Confidence 345688 88553322 2233 6899999999887754
No 415
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=59.57 E-value=5.2 Score=35.38 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=20.9
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhc
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~ 854 (877)
+...+...||+|+..-. .|+.|..|......
T Consensus 88 k~k~nl~~CP~CGh~k~-------a~~LC~~Cy~kV~k 118 (176)
T KOG4080|consen 88 KPKDNLNTCPACGHIKP-------AHTLCDYCYAKVHK 118 (176)
T ss_pred cchhccccCcccCcccc-------ccccHHHHHHHHHH
Confidence 33445679999987442 67788888766543
No 416
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=59.37 E-value=2.6e+02 Score=30.21 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhccCCCh-hh---HHHHHHHHHHHHHHHHHH
Q 002816 515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDS-RD---VLAARDLEYKAWAHVHSL 566 (877)
Q Consensus 515 i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~---~~~l~~~~~~~~~~~~~l 566 (877)
...+..++..|.-++.+|...+.......... .. -..+...+..+...+..+
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 34567777788888888877776554322221 11 233444555555555544
No 417
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=59.22 E-value=1.8e+02 Score=28.26 Aligned_cols=12 Identities=8% Similarity=0.146 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhh
Q 002816 790 EMGRRKVLRLQA 801 (877)
Q Consensus 790 ~~l~~~l~~l~~ 801 (877)
-.+.++++.++.
T Consensus 236 t~~e~k~d~i~K 247 (254)
T KOG2196|consen 236 TQLEKKLDKIKK 247 (254)
T ss_pred HHHHHHHHHHHh
Confidence 333344444433
No 418
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.72 E-value=2.5e+02 Score=29.74 Aligned_cols=6 Identities=0% Similarity=0.263 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002816 601 ADMRQK 606 (877)
Q Consensus 601 ~~l~~~ 606 (877)
..+..+
T Consensus 30 s~~~aq 35 (459)
T KOG0288|consen 30 SRLSAQ 35 (459)
T ss_pred HHHHHH
Confidence 333333
No 419
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=58.54 E-value=4.5 Score=40.20 Aligned_cols=25 Identities=36% Similarity=0.986 Sum_probs=13.8
Q ss_pred ccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 839 KCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 839 ~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.|-|+||.+|=.=.+. .-..||.|.
T Consensus 350 ~Ck~~FCldCDv~iHe-sLh~CpgCe 374 (378)
T KOG2807|consen 350 SCKNVFCLDCDVFIHE-SLHNCPGCE 374 (378)
T ss_pred hccceeeccchHHHHh-hhhcCCCcC
Confidence 4667777777433333 223477774
No 420
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.21 E-value=90 Score=24.53 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 606 KLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQ 650 (877)
Q Consensus 606 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 650 (877)
+++.+..+...+...-.+.+..+.....++..+...+-+++..-.
T Consensus 12 Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~ 56 (79)
T PF08581_consen 12 EFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444444333
No 421
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.82 E-value=1.8e+02 Score=28.89 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 002816 664 IKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLD 717 (877)
Q Consensus 664 ~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 717 (877)
--+..+.++.......+..++......+..+..+++.++...-.|+++++=++.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666666666677777777777777777777776655543
No 422
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=57.67 E-value=3.6 Score=34.88 Aligned_cols=11 Identities=9% Similarity=-0.091 Sum_probs=6.9
Q ss_pred ccccccccccc
Q 002816 822 ILKCSICLERP 832 (877)
Q Consensus 822 ~l~C~~C~~~~ 832 (877)
...|+.|+..|
T Consensus 9 Kr~Cp~cg~kF 19 (129)
T TIGR02300 9 KRICPNTGSKF 19 (129)
T ss_pred cccCCCcCccc
Confidence 35677666655
No 423
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.47 E-value=6.9 Score=37.57 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=47.7
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+.|.|-++.+++||+.|.|-++-+.=|..++..-.++=|+.|.++....+.+||
T Consensus 212 lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~ 265 (284)
T KOG4642|consen 212 LCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNL 265 (284)
T ss_pred hhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccch
Confidence 567888999999999999999999999988886577899999999988877775
No 424
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=57.36 E-value=3e+02 Score=30.27 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002816 303 RDMESVHKELMDQASH 318 (877)
Q Consensus 303 ~~l~~~l~~~~~~~~~ 318 (877)
..+...+.+.++.+..
T Consensus 95 ~~lD~rLvevre~L~~ 110 (531)
T PF15450_consen 95 QQLDKRLVEVREALTQ 110 (531)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 3344444444443333
No 425
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.21 E-value=1.8e+02 Score=27.82 Aligned_cols=185 Identities=10% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q 002816 628 IEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAAR 707 (877)
Q Consensus 628 ~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~ 707 (877)
+..-......+..=+.++...+=. -|..+.+++..+..........+..+..+...+..-+..+..++..+...+..
T Consensus 4 ~~~He~af~~iK~YYndIT~~NL~---lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 4 MKNHEKAFQEIKNYYNDITLNNLE---LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002816 708 IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMEL-QIELVKERFAKKRLE 786 (877)
Q Consensus 708 l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~-~~~l~~~~~~~~~~~ 786 (877)
.......+..+...+..+...+..+...-..+...+..+...-+.+...+...-..+... ...---++..+..+.
T Consensus 81 ----y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~ 156 (201)
T PF13851_consen 81 ----YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALS 156 (201)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhc-CcchHHHHHHHHHhc
Q 002816 787 EDLEMGRRKVLRLQAQTE-GSSIIEELQQELREY 819 (877)
Q Consensus 787 ~el~~l~~~l~~l~~~~~-~~~~~~~l~~~~~~l 819 (877)
..++.-...+...-.... ....+..+...++..
T Consensus 157 ~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~ 190 (201)
T PF13851_consen 157 EQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDV 190 (201)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
No 426
>PRK12495 hypothetical protein; Provisional
Probab=57.11 E-value=19 Score=34.07 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CcchHHHHHHHHHhccCcccccccccccccccccccchhhhHH
Q 002816 769 MELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTE-GSSIIEELQQELREYREILKCSICLERPKEVVITKCYHLFCNP 847 (877)
Q Consensus 769 ~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~-~~~~~~~l~~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~ 847 (877)
.+.+.+-++|+.++.+-+..-...++--.-|-.... .. +.|+.|+.++. .-=|-+||-.
T Consensus 4 FDkEaEREkLREKye~d~~~R~~~~~ma~lL~~gatmsa----------------~hC~~CG~PIp----a~pG~~~Cp~ 63 (226)
T PRK12495 4 FDKEAEREKLREKYEQDEQKREATERMSELLLQGATMTN----------------AHCDECGDPIF----RHDGQEFCPT 63 (226)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccch----------------hhcccccCccc----CCCCeeECCC
Q ss_pred h
Q 002816 848 C 848 (877)
Q Consensus 848 C 848 (877)
|
T Consensus 64 C 64 (226)
T PRK12495 64 C 64 (226)
T ss_pred C
No 427
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.96 E-value=3 Score=27.97 Aligned_cols=13 Identities=38% Similarity=0.927 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFS 868 (877)
Q Consensus 856 ~~~~Cp~c~~~~~ 868 (877)
+...||+|+.||+
T Consensus 11 p~KICpvCqRPFs 23 (54)
T COG4338 11 PDKICPVCQRPFS 23 (54)
T ss_pred chhhhhhhcCchH
No 428
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.94 E-value=2.6e+02 Score=29.54 Aligned_cols=223 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 002816 626 EEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKA 705 (877)
Q Consensus 626 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~ 705 (877)
..+..-...+......+..++..+....-.+.........+...+..-..............+..+......+... .
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~---~ 77 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEI---K 77 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCH---H
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-------------------------------------------------------
Q 002816 706 ARIENQLRFCLDQAQRLAEDRSQNS------------------------------------------------------- 730 (877)
Q Consensus 706 ~~l~~~~~~~~~~~~~l~~el~~~~------------------------------------------------------- 730 (877)
...+..+......+......+..+.
T Consensus 78 ~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~ 157 (344)
T PF12777_consen 78 EEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQ 157 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHH
Q ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
Q 002816 731 ---------------------------------------------------------------ANLENTQKRLSDVRKSS 747 (877)
Q Consensus 731 ---------------------------------------------------------------~~~~~~~~~~~~l~~~~ 747 (877)
..+..+...+......+
T Consensus 158 ~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L 237 (344)
T PF12777_consen 158 RLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQL 237 (344)
T ss_dssp HHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CcchHHHHHHHHHhccCccccc
Q 002816 748 VQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTE-GSSIIEELQQELREYREILKCS 826 (877)
Q Consensus 748 ~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~-~~~~~~~l~~~~~~l~~~l~C~ 826 (877)
...+..+..++..+..+...+.....+...++......+..+.+...-+..|+.... =...+..+...+..+-....=.
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~lla 317 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLA 317 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHH
Q ss_pred ccccccccccccccchhhhHHhHHHHhcc
Q 002816 827 ICLERPKEVVITKCYHLFCNPCVQKVTES 855 (877)
Q Consensus 827 ~C~~~~~~~~~~~c~h~~c~~C~~~~~~~ 855 (877)
.|+-.|..| +.+.|-...+..++.+
T Consensus 318 aa~isY~G~----f~~~~R~~l~~~~W~~ 342 (344)
T PF12777_consen 318 AAFISYLGP----FTPEYRQELLKKMWKP 342 (344)
T ss_dssp HHHHHCCCC----TSHHHHHHHHHHH---
T ss_pred HHHHHHcCC----CCHHHHHHHHHHhccc
No 429
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.85 E-value=80 Score=24.02 Aligned_cols=52 Identities=13% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQ 646 (877)
Q Consensus 595 ~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 646 (877)
.++..|.+|+..+.-.+..+..|...+......+..+...+..+...+.++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 430
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=56.85 E-value=7.4 Score=27.53 Aligned_cols=17 Identities=29% Similarity=0.821 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPNDV 872 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~~~ 872 (877)
++++||.|++++.....
T Consensus 7 PH~HC~VCg~aIp~de~ 23 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CCccccccCCcCCCccc
No 431
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=56.80 E-value=6.3 Score=27.91 Aligned_cols=40 Identities=23% Similarity=0.674 Sum_probs=0.0
Q ss_pred ccccccccc--cccccc--ccchhhhHHhHHHHhccCCCCCCC--CCCCCC
Q 002816 824 KCSICLERP--KEVVIT--KCYHLFCNPCVQKVTESRHRKCPG--CAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~--~~~~~~--~c~h~~c~~C~~~~~~~~~~~Cp~--c~~~~~ 868 (877)
.|++|+..| .+.++. .||-.+=+.|...... |-. |..+|.
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~-----C~~~~c~~~~~ 52 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGG-----CINYSCGTGFE 52 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhhCCc-----eEeccCCCCcc
No 432
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=55.91 E-value=6.4 Score=44.93 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=0.0
Q ss_pred ccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 825 CSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 825 C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
|+-|+..+.......||+. .....++||.|+.+++.
T Consensus 18 C~~CG~~l~~~~Cp~CG~~---------~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 18 CQKCGTSLTHKPCPQCGTE---------VPVDEAHCPNCGAETGT 53 (645)
T ss_pred ccccCCCCCCCcCCCCCCC---------CCcccccccccCCcccc
No 433
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=55.80 E-value=2.8e+02 Score=29.56 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 002816 642 YDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQR 721 (877)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 721 (877)
++.+..+...+..++..++.-+..+....... ....+..+...+..+-..+-..+..+...-..+...+..+..+...
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 722 LAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRL 766 (877)
Q Consensus 722 l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~ 766 (877)
+.++...+-..........-+.+.++..+..++.-...++..+..
T Consensus 223 ~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 223 LNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
No 434
>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=55.76 E-value=6.3 Score=30.18 Aligned_cols=25 Identities=20% Similarity=0.670 Sum_probs=0.0
Q ss_pred hhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 842 HLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 842 h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
|++|.-|-...+.-....|..|+.|
T Consensus 16 htlC~RCG~~syH~QKstC~~CGYp 40 (92)
T KOG3475|consen 16 HTLCRRCGRRSYHIQKSTCSSCGYP 40 (92)
T ss_pred hHHHHHhCchhhhhhcccccccCCc
No 435
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.76 E-value=2.1e+02 Score=28.04 Aligned_cols=193 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 002816 577 LRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQN----QQL 652 (877)
Q Consensus 577 ~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~----~~~ 652 (877)
..+..+..+...+..+.......|.-|.+.++..+.+...+......++..++.+..+++-+-.--..+...+ ..+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002816 653 LQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSAN 732 (877)
Q Consensus 653 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~ 732 (877)
...+.+...+...+..+...+..+...+.....-+.....+........-.......+..-.+...-.....-...++..
T Consensus 89 aa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak 168 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAK 168 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLM 769 (877)
Q Consensus 733 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~ 769 (877)
...+.-.+..+-..-.++-..-+.+.-....+...+.
T Consensus 169 ~a~LafDLkamideKEELimERDa~kcKa~RLnhELf 205 (389)
T KOG4687|consen 169 CAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELF 205 (389)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHH
No 436
>PRK04406 hypothetical protein; Provisional
Probab=55.67 E-value=96 Score=24.09 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQ 646 (877)
Q Consensus 590 ~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 646 (877)
.+.+..++..|.+|+..+.-.+.-+..|...+......+..+...+..+...+.++.
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 437
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.67 E-value=3.9 Score=46.06 Aligned_cols=38 Identities=26% Similarity=0.586 Sum_probs=0.0
Q ss_pred cccccccccc-------cccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 824 KCSICLERPK-------EVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 824 ~C~~C~~~~~-------~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
+|+.|+.+.- ..+.+.|||+|-..|+....-.+. |..|
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~ 830 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIE 830 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChh
No 438
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=55.50 E-value=4.1 Score=41.16 Aligned_cols=30 Identities=20% Similarity=0.547 Sum_probs=0.0
Q ss_pred cCcccccccc-cccccccccccchhhhHHhH
Q 002816 820 REILKCSICL-ERPKEVVITKCYHLFCNPCV 849 (877)
Q Consensus 820 ~~~l~C~~C~-~~~~~~~~~~c~h~~c~~C~ 849 (877)
+..+.|.-|+ .....-..+|||..||..|+
T Consensus 37 ~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl 67 (441)
T COG4098 37 NGKYRCNRCGNTHIELFAKLPCGCLYCRNCL 67 (441)
T ss_pred cCcEEehhcCCcchhhhcccccceEeehhhh
No 439
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=55.46 E-value=5.8e+02 Score=33.04 Aligned_cols=572 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccccCCCCCCchhHHHHHHhhccCCCCCCCCCCcchhHHhHhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHhccccCC
Q 002816 116 SIIEDVTPHPSHDAFLSRLMETGATESSSADNCPNQMEEDRETGIPRTKNIVSNILAAVDNLWHLKGGLYAAVLKDLQDG 195 (877)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (877)
|.-...+.+..+..|+..- +..+....=..+...-..+..+...+..+...+..+..
T Consensus 195 P~Ls~~~~~~~l~~~l~~~--------------l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~--------- 251 (1353)
T TIGR02680 195 PQLSKKPDEGVLSDALTEA--------------LPPLDDDELTDVADALEQLDEYRDELERLEALERALRN--------- 251 (1353)
T ss_pred CCCCCCCChHHHHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred chhhhhhhhhHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002816 196 GSKQKASSNLQSEVKNLRL-ALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274 (877)
Q Consensus 196 ~~~~~~~~~l~~e~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~~~~~~ 274 (877)
+......+.. .+.......-.....+..+...+.....++......+..++..+..+...+..+..+...
T Consensus 252 ---------i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~ 322 (1353)
T TIGR02680 252 ---------FLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEA 322 (1353)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCCcccccccCcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHhhhhhhhhcchh
Q 002816 275 TKGAFFPVLNLGNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVLQQLYNLQNTLKSVKCLSSSK 354 (877)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~el~~l~~~~~~l~~e~~~l~~~l~~~~~~~~~~ 354 (877)
+... ..-....++..++..+......+....................
T Consensus 323 l~~~----------------------~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~----------- 369 (1353)
T TIGR02680 323 LQGS----------------------PAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRR----------- 369 (1353)
T ss_pred hcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHhhhhhcHHHHHh
Q 002816 355 AFLSVKNQLEKSKSEVFKYQALFE-----------------------------KLQVEKDNLAWRETELNMKIDLVDVFR 405 (877)
Q Consensus 355 ~~~~l~~~l~~~~~~l~~~~~~~~-----------------------------~l~~~~~~l~~~~~~~~~~~~~~~~~~ 405 (877)
..............+......+. .+......+..........+..+....
T Consensus 370 -~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~i~~L~~~~ 448 (1353)
T TIGR02680 370 -LDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRD 448 (1353)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH-------------------------------H
Q 002816 406 RSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKEIIAEFR-------------------------------A 454 (877)
Q Consensus 406 ~~~~~~~~~~~~le~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~el~-------------------------------~ 454 (877)
.....+......+......+......+............ ....-+. .
T Consensus 449 ~~~e~a~~~~~~~~~~~~el~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1353)
T TIGR02680 449 DVADRAEATHAAARARRDELDEEAEQAAARAELADEAVH--REGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDA 526 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhhccchhhhhcchhhhhhhhcchhh
Q ss_pred HHhcchHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHhhHHHHHHHHhhcH-------------------------
Q 002816 455 LVSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSA------------------------- 509 (877)
Q Consensus 455 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~i~------------------------- 509 (877)
.......-...+.. .|......+......+......+.....++......+.
T Consensus 527 ~~~~~~~i~~~~~~---~~~~~~~~l~~~~~~l~~~~~~l~e~~~el~~e~~~~e~~~~~~P~~~~~R~a~r~~~~pgaP 603 (1353)
T TIGR02680 527 LLQGEAPVRVAVYS---AVQPLADELTRERAALRLAEEVLEEERDALRTERERLEQGTDRDPPPPHTRAALRRAGRAGAP 603 (1353)
T ss_pred hhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHcCCCCCc
Q ss_pred --------------------------------------------------------------------------------
Q 002816 510 -------------------------------------------------------------------------------- 509 (877)
Q Consensus 510 -------------------------------------------------------------------------------- 509 (877)
T Consensus 604 ~~~l~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~~~~~~~~~d~~l~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 683 (1353)
T TIGR02680 604 LWQLVDFADDVPADVRAGLEAALEAAGLLDAWVTADGTLQDPDGAVLLHPATVAPGETLADVLRPWLDPPVSAERQPEVD 683 (1353)
T ss_pred chhheecCCCCCHHHHHHHHHHHHHCCCcceeeCCCcccccCCCceeecCCCcccCCCHHhhccCccCCCcchhccccCc
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHhHhhHHHHHH
Q 002816 510 -------------------------------------------------------DQVAEIHKLQAMVQDLTDSNLELKL 534 (877)
Q Consensus 510 -------------------------------------------------------~~~~ei~~l~~~~~~l~~~~~~l~~ 534 (877)
.+...|..|..++..+...
T Consensus 684 ~~~v~~~L~~i~~~~~~~~~~~~~v~~dG~~r~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~------ 757 (1353)
T TIGR02680 684 PAAVTRVLEGIACGTADAGAAHTWIDVDGRFRLGVLRGAWAKPAAEYIGAAARERARLRRIAELDARLAAVDDE------ 757 (1353)
T ss_pred HHHHHHHHhhccccCCCCCCCCeeECCCCceeeeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 535 ILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDM 614 (877)
Q Consensus 535 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~ 614 (877)
+..+...+..+...+..|......+-....+..+..........+.....++......+.......
T Consensus 758 --------------i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~ 823 (1353)
T TIGR02680 758 --------------LAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAW 823 (1353)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 615 VSLSDALKSKNEEIE--AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQ 692 (877)
Q Consensus 615 ~~l~~~l~~~~~~~~--~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~ 692 (877)
......+...-..+. .-...+..+...+..+...+..+......+ .............+..+...+.....++.
T Consensus 824 ~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L----~~A~~~~~~a~~~le~ae~~l~~~~~e~~ 899 (1353)
T TIGR02680 824 KQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVREL----RHAATRAAEQRARAARAESDAREAAEDAA 899 (1353)
T ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 693 QANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772 (877)
Q Consensus 693 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~ 772 (877)
.+..++......+..+...+... +..+...+......++.+...+..+...+..+...+..+...+......+....
T Consensus 900 ~~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~ 976 (1353)
T TIGR02680 900 EARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERA 976 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 002816 773 IELVKERFAKKRL 785 (877)
Q Consensus 773 ~~l~~~~~~~~~~ 785 (877)
..-.....-...+
T Consensus 977 ~~~~~~~~~~~e~ 989 (1353)
T TIGR02680 977 EARDHAIGQLREF 989 (1353)
T ss_pred HHHHHHHHHHHHH
No 440
>PF15294 Leu_zip: Leucine zipper
Probab=55.25 E-value=2.3e+02 Score=28.45 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHH
Q 002816 624 KNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ--DALLMDKHMMESEIQQANASLNFF 701 (877)
Q Consensus 624 ~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~e~~~l~~~~~~~~~~l~~~ 701 (877)
+..++..+..+...+...+..++........+...++..+..++.......... ..-..++..++..+..+..++...
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 702 DMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVR---KSSVQVRGSLEESQSKVYKSRLTL 768 (877)
Q Consensus 702 ~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~---~~~~~l~~~l~~~~~~~~~l~~~l 768 (877)
+.........+...+..+..++-..+..+......+...- .....++.-+..-..++..++.++
T Consensus 210 ---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 210 ---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
No 441
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=54.92 E-value=2.3e+02 Score=28.35 Aligned_cols=142 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 002816 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ 677 (877)
Q Consensus 598 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 677 (877)
.....|-.++......+-++-..=..+..........--.+..--..+...+.....++......+..+..+-..++.++
T Consensus 120 k~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002816 678 DALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR 739 (877)
Q Consensus 678 ~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~ 739 (877)
.....+++..+.++..++.---.+-.+...++.++..+-...-..-..+.-+...++.....
T Consensus 200 ekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 200 EKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 442
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=54.89 E-value=2.3 Score=28.52 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=0.0
Q ss_pred ccchhhhHHhHHHHhccCCCCCCCCCC
Q 002816 839 KCYHLFCNPCVQKVTESRHRKCPGCAA 865 (877)
Q Consensus 839 ~c~h~~c~~C~~~~~~~~~~~Cp~c~~ 865 (877)
.|||.|-...-..- .....||.|+.
T Consensus 10 ~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC--CCCCcCCCCCC
No 443
>PRK10698 phage shock protein PspA; Provisional
Probab=54.78 E-value=2.2e+02 Score=27.88 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 002816 637 TIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL 716 (877)
Q Consensus 637 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 716 (877)
.+..-++.++.-...+..-+.++++.+..+...+...-.....+...+..+...+..+.......-..-.. .-.....
T Consensus 14 ~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E--dLAr~AL 91 (222)
T PRK10698 14 NINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE--DLARAAL 91 (222)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 002816 717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERF----AKKRLEEDLEMG 792 (877)
Q Consensus 717 ~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~----~~~~~~~el~~l 792 (877)
.....+...+..+...+......+..+...+..|+.++..+......+..+.........--.. .....-..+.++
T Consensus 92 ~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rm 171 (222)
T PRK10698 92 IEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q ss_pred HHHHHHHhhhhc--CcchHHHHHHHHHhccC
Q 002816 793 RRKVLRLQAQTE--GSSIIEELQQELREYRE 821 (877)
Q Consensus 793 ~~~l~~l~~~~~--~~~~~~~l~~~~~~l~~ 821 (877)
..++..+..... ..+....+..++..+..
T Consensus 172 E~ki~~~Ea~aea~~~~~~~~l~~e~~~le~ 202 (222)
T PRK10698 172 ERRIDQMEAEAESHGFGKQKSLDQQFAELKA 202 (222)
T ss_pred HHHHHHHHHHHhHhhccCCCCHHHHHHHhhc
No 444
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.60 E-value=3.3e+02 Score=29.97 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhh-HHHH---------------
Q 002816 489 SLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRD-VLAA--------------- 552 (877)
Q Consensus 489 ~~~~~l~~~~~~~~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~l--------------- 552 (877)
++..-+.....++--+...+......|...+..+..-+..+..|...+..-+-....... +...
T Consensus 233 ~~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~e 312 (654)
T KOG4809|consen 233 GRLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVE 312 (654)
T ss_pred HHHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHH
Q ss_pred ----------HHHHHHHHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 553 ----------RDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALK 622 (877)
Q Consensus 553 ----------~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~ 622 (877)
.........++.........+... +..++....+....+..++.....|..........+..+.-.+.
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEk--v~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEK--VNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 623 SKNEEIEAYLSEIETIGQSYDD------MQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANA 696 (877)
Q Consensus 623 ~~~~~~~~l~~e~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 696 (877)
....++..+...+........+ +...+..+...+..+.+.......+...+-.-+..+..++..-...+..+..
T Consensus 391 qkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler 470 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELER 470 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCc
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 697 SLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELV 776 (877)
Q Consensus 697 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~ 776 (877)
........+..+.-.-..-...-..+-.++......+..-...+. +.++...+......+.....++.....-+.
T Consensus 471 ~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq-----~eel~~alektkQel~~tkarl~stqqsla 545 (654)
T KOG4809|consen 471 HMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQ-----IEELMNALEKTKQELDATKARLASTQQSLA 545 (654)
T ss_pred hhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH-----HHHHHHHHHHHhhChhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHH
Q 002816 777 KERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQEL 816 (877)
Q Consensus 777 ~~~~~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~ 816 (877)
.-+.-+..+..+-..--..+-.++...-.++.-.+.-..+
T Consensus 546 Eke~HL~nLr~errk~Lee~lemK~~a~k~~i~~d~~~~~ 585 (654)
T KOG4809|consen 546 EKEAHLANLRIERRKQLEEILEMKKPAWKPGIHADMWRET 585 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCHHHHHHH
No 445
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.54 E-value=8.2 Score=32.29 Aligned_cols=41 Identities=29% Similarity=0.596 Sum_probs=0.0
Q ss_pred cccccccccccc--------------ccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 825 CSICLERPKEVV--------------ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 825 C~~C~~~~~~~~--------------~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
|..|...|..+. -..|++.||.+|=.=++. .-..||.|...
T Consensus 58 C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~~~ 112 (112)
T TIGR00622 58 CFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCIHK 112 (112)
T ss_pred ccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCCCC
No 446
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.53 E-value=4.1e+02 Score=31.02 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHH---HHHHHH
Q 002816 596 AEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQIT--ERDDYNI---KLVLEG 670 (877)
Q Consensus 596 ~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---~l~~~~ 670 (877)
.......+......+...+..+...+......+..........-..+..+............ .-..... ....+.
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 177 (670)
T KOG0239|consen 98 VEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKES 177 (670)
T ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002816 671 VRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLR---FCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSS 747 (877)
Q Consensus 671 ~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~---~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~ 747 (877)
..+...+..+...+......+......+.........+...+. ........+..........+..+...+..+...+
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 002816 748 VQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLE---EDLEMGRRKVLRLQ 800 (877)
Q Consensus 748 ~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~---~el~~l~~~l~~l~ 800 (877)
..+......+...+......+......+......+.... .....|.+.+.+|.
T Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 258 KELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 447
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=53.91 E-value=4.9 Score=27.78 Aligned_cols=36 Identities=39% Similarity=0.891 Sum_probs=0.0
Q ss_pred cccccccccc--cccccc---c-----hhhhHHhHHHHhccC-CCCCCCC
Q 002816 825 CSICLERPKE--VVITKC---Y-----HLFCNPCVQKVTESR-HRKCPGC 863 (877)
Q Consensus 825 C~~C~~~~~~--~~~~~c---~-----h~~c~~C~~~~~~~~-~~~Cp~c 863 (877)
|-||+..... +.+.|| | |. .|+..|+... ...||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~---~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHR---SCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEEC---CHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHH---HHHHHHHHhcCCCcCCCC
No 448
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.90 E-value=7 Score=43.38 Aligned_cols=37 Identities=22% Similarity=0.582 Sum_probs=0.0
Q ss_pred ccccccccccc----ccccccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 824 KCSICLERPKE----VVITKCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 824 ~C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.|-+|..+-.. +-.+.|+-.||..|...+.. .||.|+
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~~~----~~~vC~ 696 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVACSLDYAS----ISEVCG 696 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhhhhhhhc----cCcccC
No 449
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=53.83 E-value=3.8 Score=37.16 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=0.0
Q ss_pred hHHhHHHHhccCCCCCCCCCCC
Q 002816 845 CNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 845 c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
|..|-..+....+-.||+|+.+
T Consensus 137 C~vCGy~~~ge~P~~CPiCga~ 158 (166)
T COG1592 137 CPVCGYTHEGEAPEVCPICGAP 158 (166)
T ss_pred cCCCCCcccCCCCCcCCCCCCh
No 450
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.68 E-value=7.1 Score=38.44 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhccC-cccccccccccccc--------------cccccchhh---hHHhHHHHhccCCCCCCCCC
Q 002816 806 SSIIEELQQELREYRE-ILKCSICLERPKEV--------------VITKCYHLF---CNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 806 ~~~~~~l~~~~~~l~~-~l~C~~C~~~~~~~--------------~~~~c~h~~---c~~C~~~~~~~~~~~Cp~c~ 864 (877)
+..+..|...++.+.. ...||+=+..+.-| |-+.|||+- -+-|-...-. +.+.||+|+
T Consensus 273 sPt~k~lE~~~~~iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~-~~r~CPmC~ 348 (429)
T KOG3842|consen 273 SPTMKHLEALRQEINAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQ-RERECPMCR 348 (429)
T ss_pred CccHHHHHHHHHHHhccCCCCCcccceeecccccccccccccCCeEEEeccccccccccccccccCc-ccCcCCeee
No 451
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.59 E-value=2.1e+02 Score=27.47 Aligned_cols=97 Identities=6% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002816 661 DYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL 740 (877)
Q Consensus 661 ~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~ 740 (877)
.++..+-..+..+... +....+...+......... +..+.+........+..+++....+++..+.....+..+.
T Consensus 114 ~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 114 RRLHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002816 741 SDVRKSSVQVRGSLEESQSKVY 762 (877)
Q Consensus 741 ~~l~~~~~~l~~~l~~~~~~~~ 762 (877)
..+..+...+-...+.++.++.
T Consensus 189 e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 189 EGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHcccHHHHHHHHHHHHHHHHh
No 452
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=53.40 E-value=1.7 Score=27.05 Aligned_cols=23 Identities=35% Similarity=0.972 Sum_probs=0.0
Q ss_pred hhhhHHhHHHHhccC---CCCCCCCC
Q 002816 842 HLFCNPCVQKVTESR---HRKCPGCA 864 (877)
Q Consensus 842 h~~c~~C~~~~~~~~---~~~Cp~c~ 864 (877)
|.||..|-....... .+.||.|+
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg 28 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCG 28 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS
T ss_pred CcccCcCCccccCCCCcCEeECCCCc
No 453
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.37 E-value=11 Score=42.52 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=0.0
Q ss_pred ccccccccccccccc--ccchhhhHHhHHHHhccCCCCCCC--CCCCCCCCCCcccCC
Q 002816 824 KCSICLERPKEVVIT--KCYHLFCNPCVQKVTESRHRKCPG--CAASFSPNDVKPVYI 877 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~--~c~h~~c~~C~~~~~~~~~~~Cp~--c~~~~~~~~~~~~~~ 877 (877)
.|.+|...+...... .|||.--..|+..|+. ....||. |+..-....+...|.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~~~C~~~c~~~~~~D~~~ 837 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFF-KASPCAKSICPHLCHYSSFIDTFM 837 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHh-cCCCCccccCCccccccccchhhh
No 454
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=53.35 E-value=2.3e+02 Score=27.73 Aligned_cols=187 Identities=6% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHhH
Q 002816 630 AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA-----NASLNFFDMK 704 (877)
Q Consensus 630 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-----~~~l~~~~~~ 704 (877)
.+..-++.+.....-+...+......+..+...+..+......+...+.........++...... +......-..
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~ 93 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEE 93 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 002816 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSK-----------VYKSRLTLMELQI 773 (877)
Q Consensus 705 ~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-----------~~~l~~~l~~~~~ 773 (877)
+..++.....+...+..+......+...+..+..+|.++......+.......... .......+..++.
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~ 173 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEE 173 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhcCcchHHHHHHHH
Q 002816 774 ELVKERFAKKRLE----EDLEMGRRKVLRLQAQTEGSSIIEELQQEL 816 (877)
Q Consensus 774 ~l~~~~~~~~~~~----~el~~l~~~l~~l~~~~~~~~~~~~l~~~~ 816 (877)
.+...+....-+. ..-..+..++..++........+..+....
T Consensus 174 kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~~~La~lka~~ 220 (225)
T COG1842 174 KIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARM 220 (225)
T ss_pred HHHHHHHHHHHhHHhhccCcccHHHHHHHhcccccHHHHHHHHHHhh
No 455
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.04 E-value=1.6 Score=40.86 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCC--------CCCCCCCCCCCCCCccc
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHR--------KCPGCAASFSPNDVKPV 875 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~--------~Cp~c~~~~~~~~~~~~ 875 (877)
....+.||+|...|....++.-|-..-..=++--+.-... .||.|.-..-..|+..+
T Consensus 16 ~kk~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~yAaf~sDFe~I 80 (267)
T COG1655 16 YKKTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICYYAAFKSDFEKI 80 (267)
T ss_pred hhceeccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhhHHHhhHHHHhh
No 456
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=52.92 E-value=5.6e+02 Score=32.12 Aligned_cols=567 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCcccccc
Q 002816 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDVTKGAFFPVLNL 285 (877)
Q Consensus 206 ~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (877)
...+..+...+..+......+...+..+...+. +-..+..+...+......+..+.............+...
T Consensus 215 ~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~------- 286 (1047)
T PRK10246 215 PEQVQSLTASLQVLTDEEKQLLTAQQQQQQSLN-WLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLA------- 286 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh-------
Q ss_pred cCcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhHhHHHHH----HHHHHHHHhhhhhhhhcchh-------
Q 002816 286 GNKHVAGDRVRDEQRDLRDMESVHKELMDQASHQLLELKGLHDGRIKVL----QQLYNLQNTLKSVKCLSSSK------- 354 (877)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~el~~l~~~~~~l~----~e~~~l~~~l~~~~~~~~~~------- 354 (877)
.........-..+..+...+......+......+........... ..+......+..+.......
T Consensus 287 ----e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~ 362 (1047)
T PRK10246 287 ----QPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWN 362 (1047)
T ss_pred ----cchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhcHHHHHhhhhhhhh---hhHHHHHHHHHHHH
Q 002816 355 ----AFLSVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRET-ELNMKIDLVDVFRRSSAVTD---SKIADLGIEIQKQI 426 (877)
Q Consensus 355 ----~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~le~~l~~~~ 426 (877)
.+......+..+...+..+...+......+..+..... ... .........+.... ..+..+...+....
T Consensus 363 ~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1047)
T PRK10246 363 NELAGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTA---DEVAAALAQHAEQRPLRQRLVALHGQIVPQQ 439 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHHHHHH---HhHHhHHHHHHhhHH----
Q 002816 427 DEKNRIEMRLEEASREPGRKEIIAEFRALVSSFPEDMSAMQRQLSKYKEAALDIHILR---ADVLSLTNVLERKVK---- 499 (877)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~~~~~~~el~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~l~---~~~~~~~~~l~~~~~---- 499 (877)
..+..+. .....+...+..+......+...+.........+..+. .....+...-..+..
T Consensus 440 ~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~L~~GePC 506 (1047)
T PRK10246 440 KRLAQLQ-------------VAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKDLEAQRAQLQAGQPC 506 (1047)
T ss_pred HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Q ss_pred ------HHHHHHhhc----HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhh-HHHHHHHHHHHHHHHHHHHh
Q 002816 500 ------ECETLLASS----ADQVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRD-VLAARDLEYKAWAHVHSLKS 568 (877)
Q Consensus 500 ------~~~~l~~~i----~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~l~~ 568 (877)
..+...... ......+..+...+..+......+...+..+......... ...+......+.........
T Consensus 507 PVCGS~~HP~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1047)
T PRK10246 507 PLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCA 586 (1047)
T ss_pred CCCCcccCcCchhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHh---hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------------------
Q 002816 569 SLDEQ---SLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEE------------------ 627 (877)
Q Consensus 569 ~l~~~---~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~------------------ 627 (877)
.+... ... +.............+..... +..+...+..+...+..+...+......
T Consensus 587 ~~~~~~~~~~~--l~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 663 (1047)
T PRK10246 587 SLNITLQPQDD--IQPWLDAQEEHERQLRLLSQ-RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEE 663 (1047)
T ss_pred HhhhccCchHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q ss_pred ----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 628 ----------IEAYLS---EIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 694 (877)
Q Consensus 628 ----------~~~l~~---e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 694 (877)
...+.. .+..+...+..+...+.........+.................+..+......+...+...
T Consensus 664 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 743 (1047)
T PRK10246 664 ASWLATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLE 743 (1047)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHhHHHHH------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHH
Q 002816 695 NASLNFFDMKAARI------------------ENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSD----------VRKS 746 (877)
Q Consensus 695 ~~~l~~~~~~~~~l------------------~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~----------l~~~ 746 (877)
...+......+... ...+..+...+..+...+......+..+...+.. ....
T Consensus 744 ~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 823 (1047)
T PRK10246 744 AQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVT 823 (1047)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhh
Q 002816 747 SVQVRGSLEESQSKVYKSRLTLMELQIELVKERF---AKKRLEEDLEMGRRKVLRLQAQT 803 (877)
Q Consensus 747 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~---~~~~~~~el~~l~~~l~~l~~~~ 803 (877)
+..+...+..+...+..+...+..+...+..... .+..+...+..+...+..++..+
T Consensus 824 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 883 (1047)
T PRK10246 824 VEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWGYLN 883 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=52.63 E-value=3.4 Score=41.02 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=0.0
Q ss_pred cccccccccc--------------------ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 825 CSICLERPKE--------------------VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 825 C~~C~~~~~~--------------------~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
||||.-.+.. |....=|-.||+.|-........+.|+.|...|.
T Consensus 293 CpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FC 356 (378)
T KOG2807|consen 293 CPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFC 356 (378)
T ss_pred CCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceee
No 458
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=52.53 E-value=3.3 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.781 Sum_probs=0.0
Q ss_pred hHHh---HHHHhccCCCCCCCCCC
Q 002816 845 CNPC---VQKVTESRHRKCPGCAA 865 (877)
Q Consensus 845 c~~C---~~~~~~~~~~~Cp~c~~ 865 (877)
|.+| |..+-..-.+.||.|+.
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
No 459
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=52.44 E-value=6.8 Score=39.41 Aligned_cols=43 Identities=21% Similarity=0.498 Sum_probs=0.0
Q ss_pred ccccccccccccccccccchhh----hHHhHHHHhcc--------------------------------CCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLF----CNPCVQKVTES--------------------------------RHRKCPGCAA 865 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~----c~~C~~~~~~~--------------------------------~~~~Cp~c~~ 865 (877)
..|.-|+..-..-..++|-|.. |.+|...-..+ ..+.||+|+.
T Consensus 9 v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~~qSftCPyC~~ 87 (381)
T KOG1280|consen 9 VSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFGGEPISHYDPQSFTCPYCGI 87 (381)
T ss_pred ceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEecCccccccccccccCCcccc
No 460
>PRK04325 hypothetical protein; Provisional
Probab=52.32 E-value=1.1e+02 Score=23.72 Aligned_cols=55 Identities=7% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 747 SVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQA 801 (877)
Q Consensus 747 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~ 801 (877)
...+..++..++..+.-....+.++...+......+..+...+..+..++..+.+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 461
>PRK11519 tyrosine kinase; Provisional
Probab=52.20 E-value=4.7e+02 Score=31.07 Aligned_cols=137 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002816 664 IKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA--RIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLS 741 (877)
Q Consensus 664 ~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~ 741 (877)
..+............-+..++..+..++...+..+..+..... .+..........+..+..++..+......+.....
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~ 335 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYT 335 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 742 DVRKSSVQVRGSLEESQSKVYKSRLTLMEL---QIELVKERFAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 742 ~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~---~~~l~~~~~~~~~~~~el~~l~~~l~~l~ 800 (877)
.-.-.+..+..+...++.++..+..++..+ +.++..++.+..-.+.-+..+-.+.+++.
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 336 KEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 462
>PRK02119 hypothetical protein; Provisional
Probab=52.11 E-value=1.1e+02 Score=23.65 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 592 RLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQ 646 (877)
Q Consensus 592 ~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 646 (877)
.+..++..|.+|+..+.-.+..+..|...+......+..+...+..+...+.++.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 463
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.95 E-value=1.7e+02 Score=25.49 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 713 RFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMG 792 (877)
Q Consensus 713 ~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l 792 (877)
+.+..-...+...+..+...+...++.+. .++..+..++++.......+...+.++...+.....++..+..-+..|
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 002816 793 RRKVLRLQ 800 (877)
Q Consensus 793 ~~~l~~l~ 800 (877)
..+|..+.
T Consensus 116 e~ki~~ie 123 (126)
T PF07889_consen 116 EGKIDEIE 123 (126)
T ss_pred HHHHHHHh
No 464
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=50.63 E-value=5.1 Score=28.09 Aligned_cols=26 Identities=31% Similarity=0.797 Sum_probs=0.0
Q ss_pred ccccccc----cccccccccccchhhhHHh
Q 002816 823 LKCSICL----ERPKEVVITKCYHLFCNPC 848 (877)
Q Consensus 823 l~C~~C~----~~~~~~~~~~c~h~~c~~C 848 (877)
+.||+|+ ..+.....+.=.-.||..|
T Consensus 5 i~CP~CgnKTR~kir~DT~LkNfPlyCpKC 34 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTVLKNFPLYCPKC 34 (55)
T ss_pred EECCCCCCccceeeecCceeccccccCCCC
No 465
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=50.57 E-value=1.5e+02 Score=24.87 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002816 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (877)
Q Consensus 361 ~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l 432 (877)
+++-.+..+...+...++.++.+...+.+.+......-...+.+......+...+..++..+..+..++..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PLN03086 PRLI-interacting factor K; Provisional
Probab=50.48 E-value=12 Score=41.62 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=0.0
Q ss_pred HhccCccccccccccc------------ccccccccchhhhHHhHHHHhcc----CCCCCCCCCCCC
Q 002816 817 REYREILKCSICLERP------------KEVVITKCYHLFCNPCVQKVTES----RHRKCPGCAASF 867 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~------------~~~~~~~c~h~~c~~C~~~~~~~----~~~~Cp~c~~~~ 867 (877)
..+.+-+.|+.|+..| ..++.-+||..|-..-+..+... +...||+|+..|
T Consensus 448 ~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v 514 (567)
T PLN03086 448 EEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMV 514 (567)
T ss_pred cccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCcc
No 467
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.41 E-value=1.5e+02 Score=32.41 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 586 EAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQ 655 (877)
Q Consensus 586 ~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~ 655 (877)
..+...-+.....++.+++.....+..+|.++...+.++++.+...+.++..++..++..+.+..++...
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 468
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.14 E-value=2.6e+02 Score=27.38 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 002816 635 IETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRF 714 (877)
Q Consensus 635 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~ 714 (877)
...+..-++.++.-..-+..-|.+++..+..++.....+-.....+..++..+......+.......-..-. +.-...
T Consensus 12 ~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~ 89 (225)
T COG1842 12 KANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLARE 89 (225)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 002816 715 CLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERF-----------AKK 783 (877)
Q Consensus 715 ~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~-----------~~~ 783 (877)
.......++.....+...+.........+...+..+..++..+......+..+.......-.-... .+.
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fe 169 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFE 169 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhcc
Q 002816 784 RLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYR 820 (877)
Q Consensus 784 ~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~ 820 (877)
+++..+..........+... .+....+..++..+.
T Consensus 170 r~e~kiee~ea~a~~~~el~--~~~~~dl~~e~a~~~ 204 (225)
T COG1842 170 RMEEKIEEREARAEAAAELA--EGSGDDLDKEFAQAG 204 (225)
T ss_pred HHHHHHHHHHHHHHHhHHhh--ccCcccHHHHHHHhc
No 469
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.05 E-value=5.1 Score=44.77 Aligned_cols=45 Identities=27% Similarity=0.523 Sum_probs=0.0
Q ss_pred HhccCcccccccccccccccccccc----------hhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 817 REYREILKCSICLERPKEVVITKCY----------HLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~----------h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
..+-..+.|..|+..+..| .|+ ...|..|-....- +..||.|+..
T Consensus 208 rGya~~~~C~~Cg~~~~C~---~C~~~l~~h~~~~~l~Ch~Cg~~~~~--~~~Cp~C~s~ 262 (505)
T TIGR00595 208 RGYSKNLLCRSCGYILCCP---NCDVSLTYHKKEGKLRCHYCGYQEPI--PKTCPQCGSE 262 (505)
T ss_pred CcCCCeeEhhhCcCccCCC---CCCCceEEecCCCeEEcCCCcCcCCC--CCCCCCCCCC
No 470
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=49.90 E-value=4.2 Score=49.35 Aligned_cols=52 Identities=21% Similarity=0.491 Sum_probs=0.0
Q ss_pred ccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 824 KCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 824 ~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.|.-|...+.. .....||.+||.+|-+.... +.+.|..|+..+...++.+.|
T Consensus 7 ~~~~~~t~~~~~~~~~~~g~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~ 59 (1598)
T KOG0230|consen 7 VCYDCDTSVNRRHHCRVCGRVFCSKCQDSPET-SIRVCNECRGQWEQGNVAPSD 59 (1598)
T ss_pred chhccccccccCCCCcccCceeccccCCCCcc-ceeehhhhhhhccccCCCCcc
No 471
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=49.85 E-value=2.6e+02 Score=27.30 Aligned_cols=163 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 002816 637 TIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCL 716 (877)
Q Consensus 637 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 716 (877)
.+..-++.++.-...+..-+.++...+......+...-.....+...+..+...+..+.......-..-.. .-.....
T Consensus 14 ~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~E--dLAr~Al 91 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRE--DLARAAL 91 (219)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 002816 717 DQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERF----AKKRLEEDLEMG 792 (877)
Q Consensus 717 ~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~----~~~~~~~el~~l 792 (877)
............+...+..+...+..+...+..++.++..+...-..+..+.........--.. ........++++
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~ 171 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQY 171 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Q ss_pred HHHHHHHhh
Q 002816 793 RRKVLRLQA 801 (877)
Q Consensus 793 ~~~l~~l~~ 801 (877)
..++..+..
T Consensus 172 e~ki~~~ea 180 (219)
T TIGR02977 172 ERRVDELEA 180 (219)
T ss_pred HHHHHHHHH
No 472
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=49.74 E-value=5.1 Score=33.93 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=0.0
Q ss_pred cccccccccccccccccccchhhhHHh
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPC 848 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C 848 (877)
.+.|+-|+... .+-.+|+|.||..|
T Consensus 42 ~~~C~~Cg~~~--~~~~SCk~R~CP~C 66 (111)
T PF14319_consen 42 RYRCEDCGHEK--IVYNSCKNRHCPSC 66 (111)
T ss_pred eeecCCCCceE--EecCcccCcCCCCC
No 473
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.57 E-value=1.1e+02 Score=23.18 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchH
Q 002816 749 QVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSII 809 (877)
Q Consensus 749 ~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~~~~~ 809 (877)
.+..++..++..+.--..-+.++...+......+.+++..++.|-.++..+.+.+..+...
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~~~ 65 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIASPAE 65 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcc
No 474
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=49.35 E-value=1.5e+02 Score=24.51 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHhHHHH
Q 002816 631 YLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMES---EIQQANASLNFFDMKAAR 707 (877)
Q Consensus 631 l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~---~~~~~~~~l~~~~~~~~~ 707 (877)
+..++......+.-++.-+.........+......+......+...+..+..-+..+.. ++..+...+..+..-...
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 002816 708 IENQLRFC 715 (877)
Q Consensus 708 l~~~~~~~ 715 (877)
++.+++.+
T Consensus 92 LE~k~k~l 99 (99)
T PF10046_consen 92 LESKFKKL 99 (99)
T ss_pred HHHHhhcC
No 475
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=49.33 E-value=1.5e+02 Score=24.50 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q 002816 637 TIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA 706 (877)
Q Consensus 637 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~ 706 (877)
.|-.++..+..++.-+..-+-+-+.....+...+...++.+..+..+++.+.-.-..+...+..++.++.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.32 E-value=2.8e+02 Score=27.67 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 691 IQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (877)
Q Consensus 691 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~ 770 (877)
+..+..........-......+..+..+...+..++..+..+++.++.....+...+......+..++.++..+.....+
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhc--CcchHHHHHHHHHhcc
Q 002816 771 LQIELVKERFAKKRLEE-----DLEMGRRKVLRLQAQTE--GSSIIEELQQELREYR 820 (877)
Q Consensus 771 ~~~~l~~~~~~~~~~~~-----el~~l~~~l~~l~~~~~--~~~~~~~l~~~~~~l~ 820 (877)
+.--+..+-..+..+-. ....-..++..|..... .....++++.-++-|.
T Consensus 103 l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
No 477
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=49.00 E-value=3e+02 Score=27.87 Aligned_cols=312 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HhcchHHHHHHHHHHHHhHHHHHHHHHHHHhHHhHHHHHHhhHHHHHHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 002816 456 VSSFPEDMSAMQRQLSKYKEAALDIHILRADVLSLTNVLERKVKECETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI 535 (877)
Q Consensus 456 ~~~l~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~ 535 (877)
+..+..-...+..-...+.........+-.+..-+.........+...+. .+.....--+.|..-...++.....++..
T Consensus 17 l~~~~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~nk~~keE 95 (391)
T KOG1850|consen 17 LPDAEKVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRANKQTKEE 95 (391)
T ss_pred CCccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 536 LDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLAAAEAEIADMRQKLEAFKRDMV 615 (877)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~ 615 (877)
- ...+.....+-..-+..++..|. +++..+..-......++..--.+...+.
T Consensus 96 ~------------~~q~k~eEerRkea~~~fqvtL~----------------diqktla~~~~~n~klre~NieL~eKlk 147 (391)
T KOG1850|consen 96 A------------CAQMKKEEERRKEAVEQFQVTLK----------------DIQKTLAEGRSKNDKLREDNIELSEKLK 147 (391)
T ss_pred H------------HHHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHhcchhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 002816 616 SLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQ-DALLMDKHMMESEIQQA 694 (877)
Q Consensus 616 ~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~e~~~l~~~~~~~ 694 (877)
.|-.++.....-++.....++-...--..-......+......+.........+...+.... ......-..+..++.-+
T Consensus 148 eL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY 227 (391)
T KOG1850|consen 148 ELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALY 227 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 695 NASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIE 774 (877)
Q Consensus 695 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~ 774 (877)
...++.+..-+....+-......+++.+...+..+..+.-..+.+....+..+-.+-..-.-....+..++..+..++.-
T Consensus 228 ~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekL 307 (391)
T KOG1850|consen 228 MAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKL 307 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002816 775 LVKERFAKKRLEEDLEMGRRKV 796 (877)
Q Consensus 775 l~~~~~~~~~~~~el~~l~~~l 796 (877)
...++.....+...+..+...+
T Consensus 308 cRALq~ernel~~~~~~~e~~v 329 (391)
T KOG1850|consen 308 CRALQTERNELNKKLEDLEAQV 329 (391)
T ss_pred HHHHHhccccHHHHHHHHhccc
No 478
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=48.95 E-value=5e+02 Score=30.36 Aligned_cols=208 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh---hhhHHH
Q 002816 589 SQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQ--QLLQQIT---ERDDYN 663 (877)
Q Consensus 589 ~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~--~~~~~~~---~~~~~~ 663 (877)
...-...+...+..++..+..+...+......+...+.........+..+............ ....... ..-...
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 177 (670)
T KOG0239|consen 98 VEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKES 177 (670)
T ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002816 664 IKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAA---RIENQLRFCLDQAQRLAEDRSQNSANLENTQKRL 740 (877)
Q Consensus 664 ~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~---~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~ 740 (877)
..+..++..+...+.............+.........+...+. ........+..........+..++..+..+....
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002816 741 SDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKER---FAKKRLEEDLEMGRRKV 796 (877)
Q Consensus 741 ~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~---~~~~~~~~el~~l~~~l 796 (877)
..+...+..+...+...-..+..+...+......+.... ....++-.++..|+..|
T Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 258 KELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
No 479
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=48.83 E-value=11 Score=27.02 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=0.0
Q ss_pred ccccccccc---cccccc---ccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 824 KCSICLERP---KEVVIT---KCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 824 ~C~~C~~~~---~~~~~~---~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.|+.|+..+ ...+.+ .||...=.-|..-+.....+.||.|+
T Consensus 11 ~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 11 VCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCG 57 (61)
T ss_pred eeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcCCceECCCcC
No 480
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=48.76 E-value=8.4 Score=22.40 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 002816 859 KCPGCAASFS 868 (877)
Q Consensus 859 ~Cp~c~~~~~ 868 (877)
.||.|+..|.
T Consensus 4 ~C~~CgR~F~ 13 (25)
T PF13913_consen 4 PCPICGRKFN 13 (25)
T ss_pred cCCCCCCEEC
No 481
>PRK11827 hypothetical protein; Provisional
Probab=48.63 E-value=9.2 Score=27.91 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
.+|-+.+.||+|+..+.-..... .-.|+.|+..|.-.|=.++.+
T Consensus 3 ~~LLeILaCP~ckg~L~~~~~~~-----------------~Lic~~~~laYPI~dgIPVlL 46 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYNQEKQ-----------------ELICKLDNLAFPLRDGIPVLL 46 (60)
T ss_pred hHHHhheECCCCCCcCeEcCCCC-----------------eEECCccCeeccccCCccccC
No 482
>PRK11519 tyrosine kinase; Provisional
Probab=48.33 E-value=5.4e+02 Score=30.61 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002816 586 EAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIE--AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYN 663 (877)
Q Consensus 586 ~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~--~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (877)
...+..+.......+.-+..++..+..++...+..+.....+.. .+..+....-..+..++.++..+......+....
T Consensus 255 ~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y 334 (719)
T PRK11519 255 EQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLY 334 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002816 664 IKLVLEGVRARQLQDALLMDKHMMESEIQQ---ANASLNFFDMKAARIENQLRFCLDQAQRLA 723 (877)
Q Consensus 664 ~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~ 723 (877)
..-......+......+..++..+..++.. .+.++..+..+.+..+.-...+....++..
T Consensus 335 ~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 335 TKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 483
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=48.07 E-value=2e+02 Score=25.52 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHhHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 002816 694 ANASLNFFDMKAAR-IENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTL-MEL 771 (877)
Q Consensus 694 ~~~~l~~~~~~~~~-l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l-~~~ 771 (877)
+...+......... ..............+......+......+..........+......+..+......+.... ...
T Consensus 3 ~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~ 82 (136)
T PF04871_consen 3 LKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEA 82 (136)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 772 QIELVKERFAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 772 ~~~l~~~~~~~~~~~~el~~l~~~l~~l~ 800 (877)
..++..+-.-+..+...+..++.+|..||
T Consensus 83 q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHcC
No 484
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=48.02 E-value=11 Score=30.27 Aligned_cols=39 Identities=26% Similarity=0.834 Sum_probs=0.0
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
|...-.|..|...-... -.|+.|..|....-- ||.|+.+
T Consensus 52 Lt~p~kC~~C~qktVk~----AYh~iC~~Ca~~~~v-----CaKC~k~ 90 (92)
T PF10217_consen 52 LTQPKKCNKCQQKTVKH----AYHVICDPCAKELKV-----CAKCGKP 90 (92)
T ss_pred CCCCccccccccchHHH----HHHHHHHHHHHhhcc-----CcccCCC
No 485
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.88 E-value=4.6e+02 Score=29.62 Aligned_cols=301 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhhHHHHHHHH-----HHHHHHHHHHHhhhhHhhHHHHHHHhhHH
Q 002816 511 QVAEIHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLE-----YKAWAHVHSLKSSLDEQSLELRVKTAIEA 585 (877)
Q Consensus 511 ~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~l~~~l~~~~~e~~~~~~~~~ 585 (877)
+..++..++..+..+..++..+...+..+.......-....-...+ ..+...+..+...+... ...+...
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~-----~~~~~~~ 181 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKRE-----DGNAITA 181 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CccHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 002816 586 EAISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIK 665 (877)
Q Consensus 586 ~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (877)
........-..+.....|..... ....+........++...+..+.......+.++.+..............+-..+..
T Consensus 182 ~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 182 VVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Q ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002816 666 LVLE-----------GVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLE 734 (877)
Q Consensus 666 l~~~-----------~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~ 734 (877)
-... +..+..+...+..++..++.++..+..++.........-..........+............++.
T Consensus 261 ~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~ 340 (511)
T PF09787_consen 261 GCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELR 340 (511)
T ss_pred cccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHH
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-Ccc
Q 002816 735 NTQKRL----SDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ--IELVKERFAKKRLEEDLEMGRRKVLRLQAQTE-GSS 807 (877)
Q Consensus 735 ~~~~~~----~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~--~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~-~~~ 807 (877)
-+...+ .++......+..++..-..++..+...+.... .....++..+..+.+.+-.-...++.|+.... ..-
T Consensus 341 l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~l 420 (511)
T PF09787_consen 341 LYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRL 420 (511)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccc
Q ss_pred hHHHHHHHHH
Q 002816 808 IIEELQQELR 817 (877)
Q Consensus 808 ~~~~l~~~~~ 817 (877)
..+.+..++.
T Consensus 421 qlErl~~~l~ 430 (511)
T PF09787_consen 421 QLERLETQLK 430 (511)
T ss_pred cHHHHHHHHH
No 486
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=47.37 E-value=9.3 Score=35.73 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=0.0
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
+.|++|...|..| ...||.|...|+
T Consensus 261 fvCsVCLsvfc~p---------------------~~~C~~C~skF~ 285 (296)
T COG5242 261 FVCSVCLSVFCRP---------------------VPVCKKCKSKFS 285 (296)
T ss_pred eehhhhheeecCC---------------------cCcCcccccccc
No 487
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=47.27 E-value=2.4e+02 Score=26.18 Aligned_cols=169 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 002816 626 EEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKA 705 (877)
Q Consensus 626 ~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~ 705 (877)
..+..|...|..++-+-...+..+..+..+...+...+..-.............- ...+..++........-+...+
T Consensus 4 sALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q---~~dl~~qL~aAEtRCslLEKQL 80 (178)
T PF14073_consen 4 SALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQ---NQDLSSQLSAAETRCSLLEKQL 80 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhc---cHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 706 ARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRL 785 (877)
Q Consensus 706 ~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~ 785 (877)
+-...-+.....+...+...-..+...-..-...+..--..+..|......+...-.-...++..++..+...+....-+
T Consensus 81 eyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlv 160 (178)
T PF14073_consen 81 EYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLV 160 (178)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 002816 786 EEDLEMGRRKVL 797 (877)
Q Consensus 786 ~~el~~l~~~l~ 797 (877)
++....|...++
T Consensus 161 QdkAaqLQt~lE 172 (178)
T PF14073_consen 161 QDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHhhHH
No 488
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.19 E-value=1.1e+02 Score=22.14 Aligned_cols=53 Identities=17% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002816 590 QQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSY 642 (877)
Q Consensus 590 ~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~ 642 (877)
..++..+..++..|..+++.+..++..+...+.....+.......+..+-..+
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
No 489
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.14 E-value=2.8e+02 Score=27.01 Aligned_cols=189 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHhH
Q 002816 630 AYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA-----NASLNFFDMK 704 (877)
Q Consensus 630 ~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~-----~~~l~~~~~~ 704 (877)
.+..-++..+.....+..-+..+...+......+.........+...+..+......+....... .......-..
T Consensus 14 ~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~ 93 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIE 93 (219)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 002816 705 AARIENQLRFCLDQAQRLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRL----TLMELQIELVKERF 780 (877)
Q Consensus 705 ~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~----~l~~~~~~l~~~~~ 780 (877)
..........+...+..+...+..+...+..++.++..+......+..+.........--.. ........++.++.
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ 173 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYER 173 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--------HHHHHHHHhhhhcCcchHHHHHHHHHh
Q 002816 781 AKKRLEEDLEM--------GRRKVLRLQAQTEGSSIIEELQQELRE 818 (877)
Q Consensus 781 ~~~~~~~el~~--------l~~~l~~l~~~~~~~~~~~~l~~~~~~ 818 (877)
.+..++-.... +..++..++........+..|...+..
T Consensus 174 ki~~~ea~aea~~~~~~~~l~~~l~~l~~~~~vd~eLa~LK~~~~~ 219 (219)
T TIGR02977 174 RVDELEAQAESYDLGRKPSLEDEFAELEADDEIERELAALKAKMKK 219 (219)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHhcCCChHHHHHHHHHhhhCC
No 490
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=47.09 E-value=1.7e+02 Score=24.36 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHH
Q 002816 721 RLAEDRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSK----------------------VYKSRLTLMELQIELVKE 778 (877)
Q Consensus 721 ~l~~el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~----------------------~~~l~~~l~~~~~~l~~~ 778 (877)
.....+..+...+..+...+..+...+..+...+..+..- ...+...+..+...+..+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002816 779 RFAKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 779 ~~~~~~~~~el~~l~~~l~~l 799 (877)
......+...+..++..+..+
T Consensus 82 ~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 491
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=46.98 E-value=6.2 Score=33.84 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=0.0
Q ss_pred chhhhHHhHHHHhccCCCC--CCCCCCC
Q 002816 841 YHLFCNPCVQKVTESRHRK--CPGCAAS 866 (877)
Q Consensus 841 ~h~~c~~C~~~~~~~~~~~--Cp~c~~~ 866 (877)
+..+|..|-..+....... ||.|+.+
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCC
No 492
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.95 E-value=5.4 Score=44.32 Aligned_cols=39 Identities=26% Similarity=0.586 Sum_probs=0.0
Q ss_pred cccccccccc----ccccccchhhhHHhHHHHhc-------cCCCCCCCC
Q 002816 825 CSICLERPKE----VVITKCYHLFCNPCVQKVTE-------SRHRKCPGC 863 (877)
Q Consensus 825 C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~-------~~~~~Cp~c 863 (877)
|..|...|.. .....||-+||..|...... ...+.|-.|
T Consensus 168 C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C 217 (634)
T KOG1818|consen 168 CLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSC 217 (634)
T ss_pred cceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhh
No 493
>PRK01343 zinc-binding protein; Provisional
Probab=46.91 E-value=15 Score=26.40 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPNDV 872 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~~~ 872 (877)
+...||+|++++.....
T Consensus 8 p~~~CP~C~k~~~~~~r 24 (57)
T PRK01343 8 PTRPCPECGKPSTREAY 24 (57)
T ss_pred CCCcCCCCCCcCcCCCC
No 494
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.87 E-value=12 Score=37.75 Aligned_cols=24 Identities=29% Similarity=0.730 Sum_probs=0.0
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
+.||+|...|... +..||+|+..|
T Consensus 256 yvCs~Clsi~C~~---------------------p~~C~~Cgt~f 279 (279)
T TIGR00627 256 FVCSVCLSVLCQY---------------------TPICKTCKTAF 279 (279)
T ss_pred EECCCccCCcCCC---------------------CCCCCCCCCCC
No 495
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=46.44 E-value=8.6 Score=34.14 Aligned_cols=21 Identities=38% Similarity=0.915 Sum_probs=0.0
Q ss_pred Ccccccccccccccccccccc
Q 002816 821 EILKCSICLERPKEVVITKCY 841 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~ 841 (877)
...+||||++...+.|.+.|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
No 496
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=46.35 E-value=11 Score=27.66 Aligned_cols=11 Identities=36% Similarity=0.923 Sum_probs=0.0
Q ss_pred hhHHhHHHHhc
Q 002816 844 FCNPCVQKVTE 854 (877)
Q Consensus 844 ~c~~C~~~~~~ 854 (877)
||+-|+..|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
No 497
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.26 E-value=1.8e+02 Score=24.46 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 002816 206 QSEVKNLRLALMDLHLKHKSLTRELQSR--QDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAE 271 (877)
Q Consensus 206 ~~e~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~~~ 271 (877)
..++..+...+.....++..++.++..+ ...+..+...+.++...+..+...+..+......+-+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK11032 hypothetical protein; Provisional
Probab=46.24 E-value=2.3e+02 Score=25.82 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 696 ASLNFFDMKAARIENQLRFCLDQAQRLAEDRSQNSANLENTQKR-----LSDVRKSSVQVRGSLEESQSKVYKSRLTLME 770 (877)
Q Consensus 696 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~-----~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~ 770 (877)
........-+..+...++.....+..+.............+.+. ..-+.+.+.++-.-+......+...-.-..-
T Consensus 3 k~~~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~~~~i 82 (160)
T PRK11032 3 KVAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMRVI 82 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHhccCcccccccccccccccccccchhhhHHhHH
Q 002816 771 LQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEGSSIIEELQQELREYREILKCSICLERPKEVVITKCYHLFCNPCVQ 850 (877)
Q Consensus 771 ~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~ 850 (877)
.+.-...+-.--++.+-+...+...+.--|-=..+- .-.+-.-+...|||..+.
T Consensus 83 ~~slw~~L~~ItDrTqvEw~el~~dl~h~g~Y~sGE----------------------vvg~G~LvC~~Cg~~~~~---- 136 (160)
T PRK11032 83 KESLWQELADITDKTQLEWREVFQDLNHHGVYHSGE----------------------VVGLGNLVCEKCHHHLAF---- 136 (160)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhcCeeecce----------------------eeecceEEecCCCCEEEe----
Q ss_pred HHhccCCCCCCCCCCC
Q 002816 851 KVTESRHRKCPGCAAS 866 (877)
Q Consensus 851 ~~~~~~~~~Cp~c~~~ 866 (877)
........||.|+..
T Consensus 137 -~~p~~i~pCp~C~~~ 151 (160)
T PRK11032 137 -YTPEVLPLCPKCGHD 151 (160)
T ss_pred -cCCCcCCCCCCCCCC
No 499
>PRK00295 hypothetical protein; Provisional
Probab=46.23 E-value=1.3e+02 Score=22.85 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 596 AEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQ 646 (877)
Q Consensus 596 ~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 646 (877)
++..|.+|+..+.-.+.-+..|...+......+..+...+..+...+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.21 E-value=3.9e+02 Score=28.30 Aligned_cols=297 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 002816 368 SEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRIEMRLEEASREPGRKE 447 (877)
Q Consensus 368 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 447 (877)
.++..-...+......+..+...+.... ..+.......+.+-..+..-.......+......+..+........ .
T Consensus 1 erl~~GL~KL~et~~~V~~m~~~L~~~~---~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~--~ 75 (344)
T PF12777_consen 1 ERLENGLDKLKETEEQVEEMQEELEEKQ---PELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIE--E 75 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC--C
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-HHHHHHHHHHHHhHHhHHHHHHhh------------HHHHHHHHhhcHHHHHH
Q 002816 448 IIAEFRALVSSFPEDMSAMQRQLSKY-KEAALDIHILRADVLSLTNVLERK------------VKECETLLASSADQVAE 514 (877)
Q Consensus 448 ~~~el~~~~~~l~~~~~~l~~~~~~~-~~~~~~l~~l~~~~~~~~~~l~~~------------~~~~~~l~~~i~~~~~e 514 (877)
...+....+....-.+......+..+ .....++.++...-..+..++... .........-+......
T Consensus 76 ~~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~F 155 (344)
T PF12777_consen 76 IKEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNF 155 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHhhHHHHHHHHHHH
Q 002816 515 IHKLQAMVQDLTDSNLELKLILDMYRRESTDSRDVLAARDLEYKAWAHVHSLKSSLDEQSLELRVKTAIEAEAISQQRLA 594 (877)
Q Consensus 515 i~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~e~~~~~~~~~~~~~~~~l~ 594 (877)
+..| ..+..-.-.-..+...-..+....-....+.........+-.-+..+-.=...... +.........++..+.
T Consensus 156 l~~L-~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~---V~P~~~~l~~a~~~l~ 231 (344)
T PF12777_consen 156 LQRL-KNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKE---VEPKRQKLEEAEAELE 231 (344)
T ss_dssp HHHH-HHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHCCCCHH
T ss_pred HHHH-HhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002816 595 AAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRA 673 (877)
Q Consensus 595 ~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 673 (877)
..+..+...+..+..+...+..+...+.....+...+..++......+.....-+..+..+.......+..+......+
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
Done!