Query 002816
Match_columns 877
No_of_seqs 514 out of 2815
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 02:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 99.5 8.3E-14 2.8E-18 123.6 7.3 49 821-870 52-100 (138)
2 1t1h_A Gspef-atpub14, armadill 99.4 7.5E-14 2.6E-18 110.4 3.7 58 819-876 5-62 (78)
3 3fl2_A E3 ubiquitin-protein li 99.4 1.2E-13 4E-18 120.4 3.8 59 818-876 48-107 (124)
4 3lrq_A E3 ubiquitin-protein li 99.4 7.3E-14 2.5E-18 115.9 2.0 60 817-876 17-77 (100)
5 3ng2_A RNF4, snurf, ring finge 99.4 1.1E-13 3.8E-18 107.3 2.6 57 820-877 8-71 (71)
6 2egp_A Tripartite motif-contai 99.4 9.4E-14 3.2E-18 110.4 1.8 60 818-877 8-73 (79)
7 1g25_A CDK-activating kinase a 99.4 2E-13 6.9E-18 103.3 3.2 56 822-877 3-63 (65)
8 2ecy_A TNF receptor-associated 99.4 3.2E-13 1.1E-17 102.6 4.3 55 818-872 11-65 (66)
9 2kre_A Ubiquitin conjugation f 99.4 1.9E-13 6.6E-18 112.1 3.0 57 819-876 26-82 (100)
10 2xeu_A Ring finger protein 4; 99.3 1.6E-13 5.6E-18 104.0 1.6 56 821-877 2-64 (64)
11 2ysl_A Tripartite motif-contai 99.3 4.5E-13 1.5E-17 104.5 3.8 57 817-873 15-73 (73)
12 2f42_A STIP1 homology and U-bo 99.3 1.9E-12 6.5E-17 117.0 8.3 58 819-876 103-160 (179)
13 2kr4_A Ubiquitin conjugation f 99.3 2.2E-13 7.5E-18 108.4 1.6 57 819-876 11-67 (85)
14 1jm7_A BRCA1, breast cancer ty 99.3 1E-12 3.5E-17 112.7 4.6 66 811-876 10-77 (112)
15 1wgm_A Ubiquitin conjugation f 99.3 6.6E-13 2.2E-17 108.4 3.2 57 819-876 19-76 (98)
16 1z6u_A NP95-like ring finger p 99.3 5.3E-13 1.8E-17 119.3 2.9 55 822-876 78-133 (150)
17 2djb_A Polycomb group ring fin 99.3 6.9E-13 2.4E-17 102.7 3.1 58 817-875 10-68 (72)
18 3ztg_A E3 ubiquitin-protein li 99.3 5.6E-13 1.9E-17 109.3 2.7 59 818-876 9-70 (92)
19 2ecw_A Tripartite motif-contai 99.3 8.8E-13 3E-17 106.8 3.6 59 818-876 15-78 (85)
20 1c1g_A Tropomyosin; contractIl 99.3 8.3E-08 2.8E-12 98.2 41.9 53 742-794 227-279 (284)
21 2ecv_A Tripartite motif-contai 99.3 9.9E-13 3.4E-17 106.5 3.7 61 817-877 14-79 (85)
22 2yur_A Retinoblastoma-binding 99.3 9.2E-13 3.1E-17 102.4 2.8 54 818-871 11-66 (74)
23 2y43_A E3 ubiquitin-protein li 99.3 6.7E-13 2.3E-17 110.4 1.1 54 822-876 22-76 (99)
24 2ct2_A Tripartite motif protei 99.3 1.9E-12 6.5E-17 105.4 3.3 58 818-875 11-74 (88)
25 1jm7_B BARD1, BRCA1-associated 99.2 1.5E-12 5.1E-17 111.8 2.2 60 814-876 14-74 (117)
26 2csy_A Zinc finger protein 183 99.2 2.3E-12 7.9E-17 102.5 2.5 49 819-868 12-60 (81)
27 2ckl_A Polycomb group ring fin 99.2 2.7E-12 9.3E-17 108.6 2.5 52 818-870 11-63 (108)
28 2d8t_A Dactylidin, ring finger 99.2 1.9E-12 6.6E-17 99.8 0.5 52 821-873 14-65 (71)
29 2ysj_A Tripartite motif-contai 99.2 4.7E-12 1.6E-16 95.1 2.6 47 817-863 15-63 (63)
30 1e4u_A Transcriptional repress 99.2 1.2E-11 4.1E-16 95.7 4.7 55 819-873 8-66 (78)
31 1rmd_A RAG1; V(D)J recombinati 99.2 7.4E-12 2.5E-16 107.6 3.2 52 823-874 24-75 (116)
32 4ic3_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 98.6 0.9 57 814-877 16-73 (74)
33 2yu4_A E3 SUMO-protein ligase 99.2 4E-12 1.4E-16 103.6 1.1 57 820-876 5-70 (94)
34 2c2l_A CHIP, carboxy terminus 99.1 6.2E-12 2.1E-16 128.7 1.5 56 821-876 207-262 (281)
35 2ecg_A Baculoviral IAP repeat- 99.1 1.4E-11 4.7E-16 95.8 3.0 57 814-877 17-74 (75)
36 2ecj_A Tripartite motif-contai 99.1 1.6E-11 5.5E-16 90.6 3.2 46 818-863 11-58 (58)
37 3hct_A TNF receptor-associated 99.1 8.1E-12 2.8E-16 107.4 1.5 58 818-875 14-71 (118)
38 2ckl_B Ubiquitin ligase protei 99.1 6.2E-12 2.1E-16 115.8 0.5 51 819-869 51-102 (165)
39 2ea6_A Ring finger protein 4; 99.1 1.4E-11 4.9E-16 94.8 2.0 50 819-869 12-68 (69)
40 3l11_A E3 ubiquitin-protein li 99.1 6.3E-12 2.1E-16 107.8 -0.1 48 822-869 15-62 (115)
41 2ect_A Ring finger protein 126 99.1 2.4E-11 8.4E-16 95.8 3.2 56 819-875 12-70 (78)
42 2ecn_A Ring finger protein 141 99.1 8.5E-12 2.9E-16 96.1 0.3 56 818-875 11-66 (70)
43 1bor_A Transcription factor PM 99.1 1.5E-11 5.1E-16 89.1 1.4 47 821-871 5-51 (56)
44 2yho_A E3 ubiquitin-protein li 99.1 8.5E-12 2.9E-16 97.4 -0.0 59 811-876 7-66 (79)
45 2ecm_A Ring finger and CHY zin 99.0 6E-11 2E-15 86.3 2.5 47 821-868 4-54 (55)
46 1iym_A EL5; ring-H2 finger, ub 99.0 7.3E-11 2.5E-15 85.8 2.7 49 819-868 2-54 (55)
47 2l0b_A E3 ubiquitin-protein li 99.0 7.4E-11 2.5E-15 95.7 2.9 48 821-869 39-89 (91)
48 1chc_A Equine herpes virus-1 r 99.0 6.3E-11 2.2E-15 90.6 2.3 47 822-869 5-52 (68)
49 3knv_A TNF receptor-associated 99.0 3.1E-11 1.1E-15 106.4 0.2 52 817-868 26-77 (141)
50 2bay_A PRE-mRNA splicing facto 99.0 4.9E-11 1.7E-15 87.1 0.8 54 823-877 4-58 (61)
51 4ap4_A E3 ubiquitin ligase RNF 99.0 8.8E-11 3E-15 104.5 2.5 56 821-877 6-68 (133)
52 3htk_C E3 SUMO-protein ligase 99.0 4.9E-11 1.7E-15 112.7 0.4 60 817-876 176-239 (267)
53 2vje_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 86.7 1.9 53 822-877 8-63 (64)
54 2y1n_A E3 ubiquitin-protein li 99.0 1.7E-10 5.9E-15 117.4 3.6 55 819-873 329-383 (389)
55 2kiz_A E3 ubiquitin-protein li 99.0 1.7E-10 5.8E-15 88.4 2.7 49 820-869 12-63 (69)
56 1x4j_A Ring finger protein 38; 99.0 1.3E-10 4.5E-15 90.7 2.0 49 821-870 22-73 (75)
57 1i84_S Smooth muscle myosin he 99.0 4.2E-10 1.4E-14 136.6 7.1 70 736-805 1100-1169(1184)
58 2ep4_A Ring finger protein 24; 98.9 2.5E-10 8.7E-15 88.9 2.6 50 819-869 12-64 (74)
59 2vje_B MDM4 protein; proto-onc 98.9 1.6E-10 5.5E-15 85.7 1.2 53 822-877 7-62 (63)
60 4ap4_A E3 ubiquitin ligase RNF 98.9 1.4E-10 4.7E-15 103.3 0.6 56 821-877 71-133 (133)
61 3hcs_A TNF receptor-associated 98.9 2E-10 6.9E-15 106.3 1.5 58 817-874 13-70 (170)
62 1v87_A Deltex protein 2; ring- 98.9 4.6E-10 1.6E-14 96.1 3.3 48 823-870 26-95 (114)
63 1i84_S Smooth muscle myosin he 98.9 3E-09 1E-13 129.2 9.5 19 153-171 420-438 (1184)
64 2ea5_A Cell growth regulator w 98.8 1.2E-09 4.1E-14 82.2 1.9 48 822-876 15-63 (68)
65 3t6p_A Baculoviral IAP repeat- 98.8 6.9E-10 2.4E-14 113.1 0.6 60 811-877 284-344 (345)
66 2ecl_A Ring-box protein 2; RNF 98.8 1.7E-09 5.8E-14 85.2 1.6 49 822-871 15-78 (81)
67 3dpl_R Ring-box protein 1; ubi 98.7 8E-09 2.7E-13 85.2 3.0 47 822-869 37-101 (106)
68 3na7_A HP0958; flagellar bioge 98.6 1.4E-05 4.7E-10 78.7 25.7 36 823-869 199-234 (256)
69 1wim_A KIAA0161 protein; ring 98.6 4.6E-09 1.6E-13 85.9 -0.9 52 821-872 4-69 (94)
70 4a0k_B E3 ubiquitin-protein li 98.6 7E-09 2.4E-13 86.5 0.0 47 823-870 49-113 (117)
71 3vk6_A E3 ubiquitin-protein li 98.3 2.3E-07 7.8E-12 72.1 2.4 45 824-868 3-48 (101)
72 2d8s_A Cellular modulator of i 98.2 5.9E-07 2E-11 69.6 2.5 50 822-871 15-72 (80)
73 2ct0_A Non-SMC element 1 homol 97.8 1.5E-05 5.1E-10 60.0 3.8 49 822-870 15-65 (74)
74 3na7_A HP0958; flagellar bioge 97.5 0.025 8.7E-07 55.3 23.2 21 814-834 214-234 (256)
75 2v71_A Nuclear distribution pr 97.3 0.086 2.9E-06 47.3 22.8 33 588-620 46-78 (189)
76 2v71_A Nuclear distribution pr 97.3 0.091 3.1E-06 47.2 23.2 13 784-796 165-177 (189)
77 3k1l_B Fancl; UBC, ring, RWD, 97.2 2.9E-05 1E-09 76.0 -1.4 49 821-869 307-373 (381)
78 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00031 1E-08 50.7 3.3 48 822-869 6-59 (60)
79 1joc_A EEA1, early endosomal a 96.9 0.00047 1.6E-08 58.5 3.2 30 823-852 70-103 (125)
80 2cs3_A Protein C14ORF4, MY039 96.4 0.0017 5.8E-08 47.2 2.8 35 821-855 14-52 (93)
81 3vkg_A Dynein heavy chain, cyt 96.2 2.3 7.8E-05 56.2 31.3 25 775-799 2079-2103(3245)
82 3nw0_A Non-structural maintena 96.2 0.0031 1.1E-07 60.5 3.9 63 808-870 164-230 (238)
83 2fxo_A Myosin heavy chain, car 95.9 0.67 2.3E-05 39.4 19.8 71 730-800 54-124 (129)
84 3m62_A Ubiquitin conjugation f 95.8 0.0079 2.7E-07 68.5 5.8 56 820-876 889-945 (968)
85 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0044 1.5E-07 50.9 1.8 32 822-853 3-37 (101)
86 2b9c_A Striated-muscle alpha t 94.6 1.4 4.9E-05 38.1 14.9 49 775-823 96-145 (147)
87 2dfs_A Myosin-5A; myosin-V, in 94.6 1.1 3.8E-05 53.4 19.1 11 598-608 928-938 (1080)
88 2dfs_A Myosin-5A; myosin-V, in 94.5 1.6 5.6E-05 52.0 20.2 6 163-168 404-409 (1080)
89 3u1c_A Tropomyosin alpha-1 cha 94.3 1.7 5.9E-05 34.9 16.1 15 783-797 82-96 (101)
90 3u59_A Tropomyosin beta chain; 93.4 2.6 8.7E-05 33.9 16.1 17 781-797 80-96 (101)
91 3tnu_A Keratin, type I cytoske 93.4 1.3 4.4E-05 37.8 12.2 39 656-694 86-124 (131)
92 2b9c_A Striated-muscle alpha t 93.2 2 6.9E-05 37.1 13.2 25 684-708 82-106 (147)
93 3tnu_B Keratin, type II cytosk 93.1 2.1 7.3E-05 36.3 13.2 39 656-694 84-122 (129)
94 2ko5_A Ring finger protein Z; 92.7 0.04 1.4E-06 42.1 1.5 49 819-870 25-74 (99)
95 3q8t_A Beclin-1; autophagy, AT 92.0 3.7 0.00013 32.5 14.4 18 761-778 62-79 (96)
96 1weo_A Cellulose synthase, cat 91.7 0.15 5.2E-06 38.4 3.6 46 823-868 17-69 (93)
97 3oja_B Anopheles plasmodium-re 91.5 2.2 7.6E-05 47.9 15.0 47 756-802 534-580 (597)
98 3i2d_A E3 SUMO-protein ligase 91.4 0.059 2E-06 54.2 1.6 55 819-873 246-304 (371)
99 1z60_A TFIIH basal transcripti 90.7 0.11 3.7E-06 36.6 1.8 40 823-863 16-58 (59)
100 4fo9_A E3 SUMO-protein ligase 90.4 0.12 4.2E-06 51.8 2.7 55 819-873 212-270 (360)
101 1y02_A CARP2, FYVE-ring finger 90.2 0.018 6.1E-07 47.8 -2.9 42 823-865 20-65 (120)
102 1ic2_A Tropomyosin alpha chain 89.1 6.1 0.00021 30.1 10.9 70 205-274 4-73 (81)
103 3hnw_A Uncharacterized protein 88.8 6.3 0.00021 33.7 11.7 35 601-635 78-112 (138)
104 2k5c_A Uncharacterized protein 88.8 0.11 3.6E-06 38.1 0.6 52 822-873 8-67 (95)
105 2jee_A YIIU; FTSZ, septum, coi 87.9 7.1 0.00024 29.3 12.0 23 593-615 15-37 (81)
106 2fiy_A Protein FDHE homolog; F 87.7 0.062 2.1E-06 53.4 -1.6 44 822-866 182-231 (309)
107 3mpx_A FYVE, rhogef and PH dom 87.1 0.12 4E-06 55.6 0.0 45 823-867 376-430 (434)
108 2q6q_A Spindle POLE BODY compo 86.1 4.9 0.00017 28.3 7.5 60 44-103 2-61 (74)
109 3q8t_A Beclin-1; autophagy, AT 85.8 11 0.00039 29.7 15.0 22 750-771 58-79 (96)
110 2zet_C Melanophilin; complex, 85.7 0.63 2.2E-05 40.6 3.8 43 822-864 68-115 (153)
111 1zbd_B Rabphilin-3A; G protein 85.2 1.8 6.2E-05 36.8 6.3 44 821-864 54-105 (134)
112 4gzn_C ZFP-57, zinc finger pro 83.0 0.63 2.2E-05 33.3 2.2 43 821-870 3-45 (60)
113 3cvf_A Homer-3, homer protein 82.6 13 0.00045 27.8 9.7 15 788-802 63-77 (79)
114 2eps_A POZ-, at HOOK-, and zin 82.3 1 3.4E-05 31.2 3.1 43 822-870 12-54 (54)
115 3ghg_A Fibrinogen alpha chain; 82.3 52 0.0018 34.4 17.0 17 788-804 177-193 (562)
116 1vd4_A Transcription initiatio 81.8 0.13 4.6E-06 37.2 -1.8 40 822-871 14-53 (62)
117 1m3v_A FLIN4, fusion of the LI 81.8 0.64 2.2E-05 39.2 2.3 49 823-872 33-84 (122)
118 1vfy_A Phosphatidylinositol-3- 81.5 0.4 1.4E-05 35.9 0.8 29 823-851 12-44 (73)
119 2yw8_A RUN and FYVE domain-con 80.9 0.45 1.5E-05 36.7 0.9 45 822-866 19-72 (82)
120 2v4h_A NF-kappa-B essential mo 79.8 21 0.00073 28.4 12.4 14 784-797 87-100 (110)
121 1z2q_A LM5-1; membrane protein 79.7 0.53 1.8E-05 36.5 0.9 45 822-866 21-76 (84)
122 1wfk_A Zinc finger, FYVE domai 78.9 0.44 1.5E-05 37.2 0.2 43 823-865 10-62 (88)
123 3t7l_A Zinc finger FYVE domain 78.9 0.53 1.8E-05 37.0 0.7 42 823-864 21-71 (90)
124 3pwf_A Rubrerythrin; non heme 78.8 0.67 2.3E-05 41.5 1.4 11 857-867 153-163 (170)
125 2xqn_T Testin, TESS; metal-bin 78.7 0.97 3.3E-05 38.4 2.4 47 822-871 30-77 (126)
126 3uk3_C Zinc finger protein 217 78.0 1.3 4.4E-05 30.9 2.5 42 822-870 4-45 (57)
127 1x4u_A Zinc finger, FYVE domai 77.2 0.63 2.2E-05 36.0 0.7 30 823-852 15-48 (84)
128 3swk_A Vimentin; cytoskeleton, 76.9 23 0.00079 27.2 12.1 26 722-747 47-72 (86)
129 3cvf_A Homer-3, homer protein 76.5 22 0.00074 26.7 9.5 68 202-269 8-75 (79)
130 2jtn_A LIM domain-binding prot 75.8 1.4 4.9E-05 40.3 2.8 46 823-871 88-133 (182)
131 2jne_A Hypothetical protein YF 75.5 0.17 5.7E-06 39.0 -2.9 39 823-867 33-71 (101)
132 2xzr_A Immunoglobulin-binding 75.5 24 0.00084 26.8 17.1 8 785-792 95-102 (114)
133 1lko_A Rubrerythrin all-iron(I 75.4 0.77 2.6E-05 42.3 0.8 26 822-866 155-180 (191)
134 2rgt_A Fusion of LIM/homeobox 74.7 1.8 6.1E-05 39.0 3.1 47 822-871 33-79 (169)
135 1dvp_A HRS, hepatocyte growth 74.7 0.66 2.2E-05 44.0 0.2 41 823-863 162-213 (220)
136 6rxn_A Rubredoxin; electron tr 74.6 1.3 4.3E-05 29.4 1.5 36 821-866 3-39 (46)
137 2lv2_A Insulinoma-associated p 74.5 0.84 2.9E-05 35.5 0.7 41 823-870 29-69 (85)
138 2gmg_A Hypothetical protein PF 73.9 1.2 4E-05 35.4 1.4 31 833-869 66-96 (105)
139 2ocy_A RAB guanine nucleotide 73.1 45 0.0015 28.8 22.0 19 784-802 126-144 (154)
140 1bbo_A Human enhancer-binding 72.4 1.7 5.7E-05 30.3 1.9 41 823-870 2-42 (57)
141 3zyq_A Hepatocyte growth facto 72.3 0.88 3E-05 43.2 0.4 45 823-867 165-220 (226)
142 3i00_A HIP-I, huntingtin-inter 71.7 41 0.0014 27.7 10.9 37 358-394 44-80 (120)
143 2ctu_A Zinc finger protein 483 71.4 1 3.4E-05 33.5 0.5 35 822-870 18-52 (73)
144 2cup_A Skeletal muscle LIM-pro 70.8 1.3 4.5E-05 35.7 1.1 47 822-871 33-80 (101)
145 2jr6_A UPF0434 protein NMA0874 70.6 0.54 1.8E-05 34.4 -1.1 41 818-875 4-44 (68)
146 2adr_A ADR1; transcription reg 70.0 1.8 6E-05 30.6 1.6 42 822-870 2-43 (60)
147 1x6e_A Zinc finger protein 24; 70.0 2.1 7E-05 31.7 2.0 43 821-870 13-55 (72)
148 2ct7_A Ring finger protein 31; 69.8 0.32 1.1E-05 38.0 -2.7 29 824-852 27-61 (86)
149 2lbm_A Transcriptional regulat 69.4 2.6 8.9E-05 36.1 2.6 44 822-865 63-116 (142)
150 2lce_A B-cell lymphoma 6 prote 69.4 2.5 8.4E-05 31.5 2.4 43 821-870 16-58 (74)
151 4ayb_P DNA-directed RNA polyme 68.7 0.46 1.6E-05 30.9 -1.5 27 838-867 7-33 (48)
152 2drp_A Protein (tramtrack DNA- 68.6 1.3 4.3E-05 32.2 0.5 42 822-870 10-53 (66)
153 2ctd_A Zinc finger protein 512 68.0 4.8 0.00016 32.0 3.9 42 821-870 33-75 (96)
154 2jny_A Uncharacterized BCR; st 67.9 0.7 2.4E-05 33.6 -1.0 41 818-875 6-46 (67)
155 2jrp_A Putative cytoplasmic pr 67.7 0.4 1.4E-05 36.1 -2.4 16 858-873 52-67 (81)
156 2xjy_A Rhombotin-2; oncoprotei 67.3 2.4 8.3E-05 36.2 2.1 49 822-871 29-80 (131)
157 2js4_A UPF0434 protein BB2007; 67.1 0.68 2.3E-05 34.1 -1.2 41 818-875 4-44 (70)
158 3cve_A Homer protein homolog 1 66.5 36 0.0012 25.0 10.3 63 206-268 6-68 (72)
159 2hf1_A Tetraacyldisaccharide-1 66.4 0.56 1.9E-05 34.3 -1.8 42 818-876 4-45 (68)
160 3a7p_A Autophagy protein 16; c 66.0 63 0.0021 27.6 13.8 49 599-647 69-117 (152)
161 1rut_X Flinc4, fusion protein 65.9 1.8 6.3E-05 39.8 1.2 49 822-871 32-83 (188)
162 1x8y_A Lamin A/C; structural p 65.8 43 0.0015 25.7 9.4 37 660-696 41-77 (86)
163 1yuz_A Nigerythrin; rubrythrin 65.6 3.3 0.00011 38.3 2.8 25 822-866 171-195 (202)
164 1wd2_A Ariadne-1 protein homol 65.5 0.95 3.3E-05 32.2 -0.7 33 822-854 6-46 (60)
165 1x61_A Thyroid receptor intera 65.3 3.5 0.00012 30.5 2.5 32 823-854 34-66 (72)
166 1x79_B RAB GTPase binding effe 65.3 53 0.0018 26.5 13.2 10 792-801 89-98 (112)
167 2yt9_A Zinc finger-containing 64.7 2.9 9.9E-05 33.0 2.0 15 856-870 64-78 (95)
168 2lvu_A Zinc finger and BTB dom 68.4 1.4 4.7E-05 24.4 0.0 14 858-871 3-16 (26)
169 4h22_A Leucine-rich repeat fli 64.0 52 0.0018 25.9 10.4 52 743-794 28-79 (103)
170 2gqj_A Zinc finger protein KIA 63.7 4.5 0.00016 32.2 3.0 44 821-870 23-67 (98)
171 4h22_A Leucine-rich repeat fli 63.4 53 0.0018 25.9 11.1 12 660-671 8-19 (103)
172 2pk7_A Uncharacterized protein 63.4 0.89 3E-05 33.3 -1.2 41 818-875 4-44 (69)
173 2epq_A POZ-, at HOOK-, and zin 62.8 5.9 0.0002 25.6 3.0 36 822-864 10-45 (45)
174 2m0e_A Zinc finger and BTB dom 61.6 4.7 0.00016 22.5 2.1 15 857-871 2-16 (29)
175 1x5w_A Zinc finger protein 64, 61.2 2.8 9.7E-05 30.7 1.2 42 822-870 9-50 (70)
176 2ct1_A Transcriptional repress 60.7 2.2 7.7E-05 32.0 0.6 43 822-870 15-58 (77)
177 2d9h_A Zinc finger protein 692 60.7 4.1 0.00014 30.6 2.1 46 821-870 6-51 (78)
178 1llm_C Chimera of ZIF23-GCN4; 60.4 4.3 0.00015 31.4 2.2 41 822-869 3-43 (88)
179 2zqm_A Prefoldin beta subunit 60.2 69 0.0024 26.2 12.8 32 768-799 79-110 (117)
180 3cve_A Homer protein homolog 1 59.7 49 0.0017 24.3 10.9 8 792-799 61-68 (72)
181 3mov_A Lamin-B1; LMNB1, B-type 59.4 62 0.0021 25.4 8.7 7 686-692 76-82 (95)
182 1iml_A CRIP, cysteine rich int 59.3 4.5 0.00015 30.4 2.1 44 821-867 26-71 (76)
183 3efg_A Protein SLYX homolog; x 58.0 39 0.0014 25.3 6.9 45 757-801 19-63 (78)
184 2d8v_A Zinc finger FYVE domain 57.7 2.8 9.5E-05 29.8 0.5 32 822-854 8-40 (67)
185 3ql9_A Transcriptional regulat 57.1 5.5 0.00019 33.4 2.4 43 823-865 58-110 (129)
186 2lcq_A Putative toxin VAPC6; P 56.9 2.6 8.9E-05 37.7 0.4 11 858-868 149-159 (165)
187 1f2i_G Fusion of N-terminal 17 56.8 5.8 0.0002 29.2 2.4 42 822-870 19-62 (73)
188 2jmo_A Parkin; IBR, E3 ligase, 56.6 0.99 3.4E-05 34.5 -2.1 38 822-862 25-75 (80)
189 2wbt_A B-129; zinc finger; 2.7 56.6 5.7 0.0002 33.5 2.6 41 821-870 73-113 (129)
190 2cot_A Zinc finger protein 435 56.1 3.9 0.00013 30.6 1.3 43 821-870 17-59 (77)
191 1wff_A Riken cDNA 2810002D23 p 56.0 5.1 0.00018 30.4 1.8 47 822-872 25-73 (85)
192 1ard_A Yeast transcription fac 55.2 5.1 0.00017 22.5 1.4 13 857-869 2-14 (29)
193 1gk4_A Vimentin; intermediate 55.2 68 0.0023 24.5 11.9 37 659-695 38-74 (84)
194 2k5r_A Uncharacterized protein 54.8 1 3.4E-05 35.4 -2.3 53 818-876 4-72 (97)
195 3mjh_B Early endosome antigen 53.8 2.4 8.3E-05 25.9 -0.2 14 823-836 6-19 (34)
196 2pv0_B DNA (cytosine-5)-methyl 53.5 6.3 0.00022 40.1 2.6 43 823-865 94-147 (386)
197 2lri_C Autoimmune regulator; Z 53.4 7.6 0.00026 28.2 2.3 45 823-867 13-60 (66)
198 1nkp_A C-MYC, MYC proto-oncoge 52.6 7.9 0.00027 30.1 2.4 47 26-72 40-86 (88)
199 1klr_A Zinc finger Y-chromosom 52.6 7.7 0.00026 21.8 2.0 14 857-870 2-15 (30)
200 3nmd_A CGMP dependent protein 52.3 66 0.0023 23.5 7.5 13 787-799 54-66 (72)
201 2lvt_A Zinc finger and BTB dom 57.0 3.1 0.00011 23.6 0.0 12 858-869 3-14 (29)
202 2ee8_A Protein ODD-skipped-rel 51.6 13 0.00043 29.8 3.8 13 857-869 73-85 (106)
203 2epr_A POZ-, at HOOK-, and zin 51.6 5.8 0.0002 26.2 1.4 37 822-865 12-48 (48)
204 1paa_A Yeast transcription fac 51.6 6.4 0.00022 22.3 1.5 14 857-870 2-15 (30)
205 3a7o_A Autophagy protein 16; c 51.5 64 0.0022 23.1 8.8 41 599-639 19-59 (75)
206 1p7a_A BF3, BKLF, kruppel-like 51.1 5.9 0.0002 24.1 1.3 15 856-870 10-24 (37)
207 3c5k_A HD6, histone deacetylas 51.0 3.4 0.00012 33.6 0.2 24 822-845 24-47 (109)
208 2emh_A Zinc finger protein 484 50.2 13 0.00045 24.0 3.1 35 822-863 12-46 (46)
209 2dlk_A Novel protein; ZF-C2H2 50.1 15 0.00052 27.3 3.8 40 822-868 38-79 (79)
210 2ytm_A Zinc finger protein 28 50.0 17 0.00058 23.4 3.6 35 822-863 12-46 (46)
211 2l3k_A Rhombotin-2, linker, LI 49.8 6.1 0.00021 33.2 1.6 34 821-854 35-70 (123)
212 2lvr_A Zinc finger and BTB dom 55.3 3.5 0.00012 23.5 0.0 12 858-869 4-15 (30)
213 1rim_A E6APC2 peptide; E6-bind 49.7 8.3 0.00028 22.8 1.8 13 857-869 2-14 (33)
214 1wg2_A Zinc finger (AN1-like) 49.6 4.9 0.00017 28.6 0.7 46 822-871 15-61 (64)
215 1nlw_A MAD protein, MAX dimeri 49.5 9.7 0.00033 28.9 2.5 44 27-70 36-79 (80)
216 2emk_A Zinc finger protein 28 49.5 15 0.00051 23.7 3.3 35 822-863 12-46 (46)
217 2emp_A Zinc finger protein 347 49.5 14 0.00047 23.8 3.1 35 822-863 12-46 (46)
218 2ebt_A Krueppel-like factor 5; 49.4 12 0.00043 29.4 3.4 14 856-869 74-87 (100)
219 2k16_A Transcription initiatio 49.1 2 6.8E-05 32.4 -1.5 47 822-868 18-70 (75)
220 2i1j_A Moesin; FERM, coiled-co 49.0 66 0.0023 35.2 10.0 18 783-800 514-531 (575)
221 1a1h_A QGSR zinc finger peptid 48.8 7.7 0.00026 29.9 2.0 42 822-870 34-75 (90)
222 2eov_A Zinc finger protein 484 48.8 16 0.00054 23.5 3.3 35 822-863 12-46 (46)
223 3ttc_A HYPF, transcriptional r 48.4 11 0.00039 41.7 3.8 44 824-867 41-99 (657)
224 2kvh_A Zinc finger and BTB dom 48.3 4.2 0.00014 22.5 0.2 13 857-869 3-15 (27)
225 2emy_A Zinc finger protein 268 48.3 15 0.0005 23.7 3.0 35 822-863 12-46 (46)
226 2ytk_A Zinc finger protein 347 48.2 13 0.00043 24.0 2.7 35 822-863 12-46 (46)
227 1znf_A 31ST zinc finger from X 47.8 7 0.00024 21.4 1.2 12 858-869 2-13 (27)
228 2wbs_A Krueppel-like factor 4; 47.7 9.4 0.00032 29.3 2.3 14 856-869 64-77 (89)
229 2kmk_A Zinc finger protein GFI 47.0 8.9 0.0003 28.8 2.0 14 856-869 56-69 (82)
230 3a1b_A DNA (cytosine-5)-methyl 47.0 5.8 0.0002 34.4 1.0 42 823-864 80-132 (159)
231 1x4w_A Hypothetical protein FL 47.0 5 0.00017 28.9 0.5 45 822-870 15-63 (67)
232 2lt7_A Transcriptional regulat 46.7 8 0.00027 32.9 1.9 14 856-869 77-90 (133)
233 1rik_A E6APC1 peptide; E6-bind 46.5 5 0.00017 22.5 0.4 13 858-870 3-15 (29)
234 3vth_A Hydrogenase maturation 46.4 12 0.00041 42.5 3.7 24 844-867 163-193 (761)
235 2kvf_A Zinc finger and BTB dom 46.4 4.6 0.00016 22.5 0.2 13 857-869 3-15 (28)
236 2eoq_A Zinc finger protein 224 46.3 15 0.00053 23.6 2.9 35 822-863 12-46 (46)
237 2eoo_A ZFP-95, zinc finger pro 46.0 17 0.00057 23.4 3.1 35 822-863 12-46 (46)
238 1wfl_A Zinc finger protein 216 45.9 5.6 0.00019 29.2 0.6 43 822-868 25-68 (74)
239 3qh9_A Liprin-beta-2; coiled-c 45.7 91 0.0031 23.2 9.9 53 211-263 23-75 (81)
240 2em8_A Zinc finger protein 224 45.6 18 0.00062 23.2 3.2 35 822-863 12-46 (46)
241 4g9i_A Hydrogenase maturation 45.6 12 0.00042 42.6 3.7 24 844-867 158-188 (772)
242 2kn9_A Rubredoxin; metalloprot 45.0 4 0.00014 30.8 -0.3 14 821-834 26-39 (81)
243 2emm_A ZFP-95, zinc finger pro 45.0 16 0.00054 23.5 2.8 35 822-863 12-46 (46)
244 2eq4_A Zinc finger protein 224 44.9 15 0.00052 23.6 2.7 14 822-835 12-25 (46)
245 2dlq_A GLI-kruppel family memb 44.9 16 0.00055 30.1 3.6 13 857-869 66-78 (124)
246 4gut_A Lysine-specific histone 44.8 6 0.0002 45.5 1.0 33 823-855 14-56 (776)
247 3i00_A HIP-I, huntingtin-inter 44.8 1.3E+02 0.0045 24.7 10.9 41 762-802 43-83 (120)
248 2lkw_A Membrane fusion protein 44.7 7 0.00024 20.7 0.7 13 15-29 6-18 (26)
249 2ytd_A Zinc finger protein 473 44.4 18 0.0006 23.3 3.0 35 822-863 12-46 (46)
250 2d8y_A Eplin protein; LIM doma 44.3 18 0.00061 28.2 3.4 32 823-854 43-75 (91)
251 2l4z_A DNA endonuclease RBBP8, 44.1 9.8 0.00034 31.8 2.0 26 823-848 62-91 (123)
252 2ema_A Zinc finger protein 347 44.1 14 0.00046 23.9 2.4 35 822-863 12-46 (46)
253 1m1j_A Fibrinogen alpha subuni 44.0 2.9E+02 0.0098 28.5 15.0 10 828-837 292-301 (491)
254 1wfh_A Zinc finger (AN1-like) 43.9 10 0.00035 27.0 1.6 44 822-869 15-59 (64)
255 2lv9_A Histone-lysine N-methyl 43.8 4.4 0.00015 32.3 -0.3 43 822-865 28-75 (98)
256 2elr_A Zinc finger protein 406 43.6 9.1 0.00031 22.9 1.3 14 856-869 8-21 (36)
257 2kvg_A Zinc finger and BTB dom 43.3 3.7 0.00013 22.8 -0.6 13 857-869 3-15 (27)
258 1b8t_A Protein (CRP1); LIM dom 43.1 10 0.00034 34.8 2.1 35 821-855 33-68 (192)
259 2m0f_A Zinc finger and BTB dom 42.6 5.8 0.0002 22.2 0.2 12 858-869 3-14 (29)
260 1x6h_A Transcriptional repress 42.4 8.8 0.0003 29.2 1.3 13 822-834 15-27 (86)
261 1b8t_A Protein (CRP1); LIM dom 42.4 14 0.00046 34.0 2.8 43 823-868 143-186 (192)
262 2ytt_A Zinc finger protein 473 41.9 19 0.00067 23.1 2.9 35 822-863 12-46 (46)
263 1wil_A KIAA1045 protein; ring 41.9 23 0.00079 26.6 3.3 31 821-852 14-47 (89)
264 1wfp_A Zinc finger (AN1-like) 41.7 12 0.00042 27.5 1.8 44 822-869 25-69 (74)
265 2kdx_A HYPA, hydrogenase/ureas 41.5 7.6 0.00026 32.3 0.9 23 838-867 77-100 (119)
266 2ytj_A Zinc finger protein 484 41.3 17 0.00058 23.4 2.5 35 822-863 12-46 (46)
267 1ubd_C Protein (YY1 zinc finge 41.3 17 0.00059 30.0 3.2 51 821-871 33-108 (124)
268 2yu8_A Zinc finger protein 347 40.8 18 0.00062 23.2 2.6 35 822-863 12-46 (46)
269 2en6_A Zinc finger protein 268 40.0 19 0.00064 23.1 2.5 35 822-863 12-46 (46)
270 2yso_A ZFP-95, zinc finger pro 39.9 21 0.00072 22.9 2.8 35 822-863 12-46 (46)
271 1ovx_A ATP-dependent CLP prote 39.9 11 0.00038 27.1 1.3 33 822-854 18-52 (67)
272 2emx_A Zinc finger protein 268 39.9 22 0.00077 22.4 2.9 35 822-863 10-44 (44)
273 1loi_A Cyclic 3',5'-AMP specif 39.8 3 0.0001 22.1 -1.2 13 842-854 5-17 (26)
274 2dmi_A Teashirt homolog 3; zin 39.7 12 0.00042 30.5 1.9 13 822-834 19-31 (115)
275 1wep_A PHF8; structural genomi 39.6 21 0.0007 27.0 3.0 49 822-871 12-68 (79)
276 2epw_A Zinc finger protein 268 39.5 16 0.00056 23.4 2.2 35 822-863 12-46 (46)
277 3gox_A Restriction endonucleas 39.5 11 0.00039 33.4 1.6 46 824-869 77-149 (200)
278 2elp_A Zinc finger protein 406 39.4 7.4 0.00025 23.6 0.4 15 856-870 8-22 (37)
279 2kfq_A FP1; protein, de novo p 39.4 10 0.00036 22.0 1.0 13 857-869 2-14 (32)
280 2ghf_A ZHX1, zinc fingers and 39.2 9.2 0.00031 30.7 1.0 42 822-870 18-63 (102)
281 2ds5_A CLPX, ATP-dependent CLP 39.2 14 0.00047 25.1 1.6 34 820-853 9-44 (51)
282 2eml_A Zinc finger protein 28 39.1 17 0.00057 23.4 2.2 35 822-863 12-46 (46)
283 2enc_A Zinc finger protein 224 38.8 18 0.00062 23.2 2.3 14 822-835 12-25 (46)
284 2yy0_A C-MYC-binding protein; 38.7 49 0.0017 22.6 4.4 30 38-67 19-48 (53)
285 2eme_A Zinc finger protein 473 38.7 16 0.00056 23.4 2.1 35 822-863 12-46 (46)
286 2em5_A ZFP-95, zinc finger pro 38.5 14 0.00046 23.9 1.6 14 822-835 12-25 (46)
287 2ep2_A Zinc finger protein 484 38.5 18 0.0006 23.3 2.2 14 822-835 12-25 (46)
288 2dmd_A Zinc finger protein 64, 38.2 11 0.00037 29.5 1.3 13 857-869 64-76 (96)
289 2cr8_A MDM4 protein; ZF-ranbp 38.2 7 0.00024 25.9 0.1 24 820-849 9-32 (53)
290 2v3b_B Rubredoxin 2, rubredoxi 38.0 6.7 0.00023 27.2 -0.0 38 822-866 3-45 (55)
291 2eoe_A Zinc finger protein 347 38.0 17 0.00058 23.3 2.1 35 822-863 12-46 (46)
292 1j2o_A FLIN2, fusion of rhombo 37.9 20 0.00067 29.5 2.9 34 822-855 30-66 (114)
293 2d8x_A Protein pinch; LIM doma 37.9 15 0.0005 26.8 1.9 11 824-834 7-17 (70)
294 1f62_A Transcription factor WS 37.5 9.1 0.00031 26.0 0.6 43 824-866 2-50 (51)
295 2m0d_A Zinc finger and BTB dom 36.9 7.9 0.00027 21.7 0.2 13 857-869 3-15 (30)
296 1gh9_A 8.3 kDa protein (gene M 36.9 1.9 6.5E-05 31.7 -3.1 17 858-875 22-38 (71)
297 1fv5_A First zinc finger of U- 36.8 8.2 0.00028 23.9 0.2 15 856-870 7-21 (36)
298 2cor_A Pinch protein; LIM doma 36.7 11 0.00037 28.5 1.0 15 823-837 16-30 (79)
299 2els_A Zinc finger protein 406 36.6 7.8 0.00027 23.3 0.1 14 856-869 8-21 (36)
300 2elx_A Zinc finger protein 406 36.6 7.9 0.00027 23.0 0.1 14 856-869 6-19 (35)
301 1dx8_A Rubredoxin; electron tr 36.5 6.5 0.00022 28.8 -0.3 14 821-834 6-19 (70)
302 2wbt_A B-129; zinc finger; 2.7 36.4 6.1 0.00021 33.3 -0.6 45 823-869 42-86 (129)
303 2csh_A Zinc finger protein 297 36.3 9 0.00031 31.0 0.5 14 857-870 65-78 (110)
304 2elt_A Zinc finger protein 406 36.2 8.1 0.00028 23.2 0.2 14 856-869 8-21 (36)
305 2eq0_A Zinc finger protein 347 36.1 16 0.00054 23.5 1.6 14 822-835 12-25 (46)
306 1s24_A Rubredoxin 2; electron 36.0 6.2 0.00021 30.3 -0.5 39 821-866 34-77 (87)
307 1x64_A Alpha-actinin-2 associa 35.9 13 0.00044 28.9 1.4 25 822-846 25-52 (89)
308 2ytg_A ZFP-95, zinc finger pro 35.7 14 0.00049 23.7 1.4 35 822-863 12-46 (46)
309 2o35_A Hypothetical protein DU 35.6 11 0.00039 29.1 0.9 13 843-855 42-54 (105)
310 3fyb_A Protein of unknown func 35.5 11 0.00039 29.1 0.9 12 843-854 41-52 (104)
311 2ene_A Zinc finger protein 347 35.4 17 0.00056 23.4 1.7 14 822-835 12-25 (46)
312 2elq_A Zinc finger protein 406 35.3 8.8 0.0003 23.1 0.2 14 856-869 8-21 (36)
313 2el4_A Zinc finger protein 268 35.2 15 0.0005 23.6 1.4 14 822-835 12-25 (46)
314 1w7p_D VPS36P, YLR417W; ESCRT- 34.9 8.1 0.00028 41.7 0.0 24 845-869 183-206 (566)
315 3vp9_A General transcriptional 34.8 1.3E+02 0.0046 23.2 6.6 19 782-800 70-88 (92)
316 1nkp_B MAX protein, MYC proto- 34.8 13 0.00045 28.4 1.2 41 31-71 40-80 (83)
317 2em9_A Zinc finger protein 224 34.7 19 0.00064 23.1 1.9 35 822-863 12-46 (46)
318 2elo_A Zinc finger protein 406 34.6 9 0.00031 23.2 0.2 15 856-870 8-22 (37)
319 2emf_A Zinc finger protein 484 34.4 16 0.00055 23.5 1.5 14 822-835 12-25 (46)
320 2elv_A Zinc finger protein 406 33.7 9.6 0.00033 22.9 0.2 15 856-870 8-22 (36)
321 1nyp_A Pinch protein; LIM doma 33.5 16 0.00055 26.2 1.4 15 823-837 6-20 (66)
322 3u5n_A E3 ubiquitin-protein li 33.5 7.9 0.00027 36.1 -0.3 46 822-867 7-55 (207)
323 2dar_A PDZ and LIM domain prot 33.5 21 0.00072 27.7 2.2 15 823-837 26-40 (90)
324 1yk4_A Rubredoxin, RD; electro 33.0 8.8 0.0003 26.2 -0.1 38 822-866 2-44 (52)
325 3j21_d 50S ribosomal protein L 33.0 23 0.0008 27.2 2.2 32 822-854 33-81 (89)
326 2el6_A Zinc finger protein 268 32.9 23 0.00078 22.7 2.0 14 822-835 12-25 (46)
327 2yy0_A C-MYC-binding protein; 32.7 36 0.0012 23.3 2.9 32 47-78 21-52 (53)
328 2en8_A Zinc finger protein 224 32.6 19 0.00066 23.0 1.6 14 822-835 12-25 (46)
329 1e8j_A Rubredoxin; iron-sulfur 32.5 10 0.00034 25.9 0.1 38 822-866 3-45 (52)
330 2en1_A Zinc finger protein 224 32.5 18 0.00062 23.2 1.5 14 822-835 12-25 (46)
331 2uzg_A Ubiquitin carboxyl-term 32.3 13 0.00043 29.5 0.7 24 822-845 25-51 (97)
332 2d8x_A Protein pinch; LIM doma 32.3 13 0.00045 27.1 0.8 35 821-855 30-65 (70)
333 1x4l_A Skeletal muscle LIM-pro 32.3 15 0.0005 27.1 1.1 11 823-833 6-16 (72)
334 2c6a_A Ubiquitin-protein ligas 32.1 9.5 0.00032 24.9 -0.0 14 821-835 12-25 (46)
335 1srk_A Zinc finger protein ZFP 32.0 10 0.00035 22.5 0.1 14 856-869 6-19 (35)
336 2k2d_A Ring finger and CHY zin 31.9 3.4 0.00012 31.2 -2.5 7 859-865 57-63 (79)
337 2em2_A Zinc finger protein 28 31.9 34 0.0012 21.8 2.8 35 822-863 12-46 (46)
338 2ej4_A Zinc finger protein ZIC 31.8 41 0.0014 25.9 3.8 13 858-870 63-75 (95)
339 2dj7_A Actin-binding LIM prote 31.7 14 0.00049 27.9 0.9 25 822-846 15-43 (80)
340 2ytb_A Zinc finger protein 32; 31.6 18 0.00063 22.5 1.4 15 856-870 10-24 (42)
341 2yti_A Zinc finger protein 347 31.5 22 0.00074 22.8 1.7 15 856-870 11-25 (46)
342 2ysp_A Zinc finger protein 224 31.3 17 0.00059 23.3 1.2 14 822-835 12-25 (46)
343 1x62_A C-terminal LIM domain p 31.3 16 0.00056 27.5 1.2 25 822-846 15-42 (79)
344 3iv1_A Tumor susceptibility ge 31.2 1.6E+02 0.0056 21.9 10.2 18 593-610 20-37 (78)
345 1a7i_A QCRP2 (LIM1); LIM domai 31.0 10 0.00036 28.7 0.0 39 823-864 35-74 (81)
346 4rxn_A Rubredoxin; electron tr 30.9 26 0.00089 24.1 2.0 38 822-866 3-45 (54)
347 2elm_A Zinc finger protein 406 30.9 7.4 0.00025 23.7 -0.7 14 856-869 8-21 (37)
348 2g45_A Ubiquitin carboxyl-term 30.7 12 0.0004 31.5 0.3 23 823-845 35-57 (129)
349 2yte_A Zinc finger protein 473 30.7 19 0.00067 22.4 1.4 15 856-870 9-23 (42)
350 2cur_A Skeletal muscle LIM-pro 30.7 25 0.00087 25.4 2.2 10 824-833 7-16 (69)
351 1wyh_A SLIM 2, skeletal muscle 30.7 21 0.00071 26.2 1.7 10 824-833 7-16 (72)
352 1tac_A TAT protein; transcript 30.4 19 0.00066 26.9 1.3 19 837-863 19-37 (86)
353 2eos_A B-cell lymphoma 6 prote 30.4 21 0.00072 22.3 1.5 15 856-870 10-24 (42)
354 2d8z_A Four and A half LIM dom 30.3 26 0.00088 25.5 2.1 30 823-852 32-62 (70)
355 2en7_A Zinc finger protein 268 30.3 22 0.00074 22.4 1.6 15 856-870 11-25 (44)
356 2enf_A Zinc finger protein 347 30.3 20 0.0007 22.9 1.4 15 856-870 11-25 (46)
357 2ep0_A Zinc finger protein 28 30.3 23 0.00078 22.7 1.7 14 822-835 12-25 (46)
358 1x4k_A Skeletal muscle LIM-pro 30.0 24 0.00081 25.8 1.9 10 824-833 7-16 (72)
359 2eoh_A Zinc finger protein 28 29.9 24 0.00082 22.6 1.7 15 856-870 11-25 (46)
360 1wjp_A Zinc finger protein 295 29.7 25 0.00086 28.1 2.2 13 822-834 16-28 (107)
361 2eq2_A Zinc finger protein 347 29.6 23 0.00078 22.7 1.6 15 856-870 11-25 (46)
362 2con_A RUH-035 protein, NIN on 29.4 5.8 0.0002 29.8 -1.6 12 823-834 16-27 (79)
363 2eq1_A Zinc finger protein 347 29.4 25 0.00084 22.5 1.7 14 856-869 11-24 (46)
364 2ely_A Zinc finger protein 224 29.4 24 0.00083 22.6 1.7 16 856-871 11-26 (46)
365 2ep1_A Zinc finger protein 484 28.7 25 0.00086 22.4 1.7 15 856-870 11-25 (46)
366 3a43_A HYPD, hydrogenase nicke 28.6 5.1 0.00017 34.4 -2.3 11 857-867 107-117 (139)
367 2enh_A Zinc finger protein 28 28.6 23 0.00077 22.7 1.4 15 856-870 11-25 (46)
368 1go4_E MAD1 (mitotic arrest de 28.5 2.2E+02 0.0074 22.5 9.7 19 596-614 17-35 (100)
369 2eon_A ZFP-95, zinc finger pro 28.4 23 0.00079 22.7 1.4 15 856-870 11-25 (46)
370 2em6_A Zinc finger protein 224 28.3 24 0.00081 22.6 1.5 14 856-869 11-24 (46)
371 1t2k_D Cyclic-AMP-dependent tr 28.3 1.5E+02 0.0051 20.8 5.8 35 501-535 24-58 (61)
372 2e72_A POGO transposable eleme 28.1 22 0.00077 23.3 1.2 13 857-869 12-24 (49)
373 2apo_B Ribosome biogenesis pro 28.1 16 0.00056 25.6 0.6 14 858-871 19-32 (60)
374 2emz_A ZFP-95, zinc finger pro 28.1 27 0.00092 22.4 1.7 15 856-870 11-25 (46)
375 2eou_A Zinc finger protein 473 28.0 27 0.00092 22.1 1.7 14 856-869 11-24 (44)
376 2dar_A PDZ and LIM domain prot 27.9 16 0.00056 28.3 0.7 34 821-854 50-84 (90)
377 2kpi_A Uncharacterized protein 27.8 8.9 0.0003 26.7 -0.8 16 818-833 6-21 (56)
378 2vrw_B P95VAV, VAV1, proto-onc 27.7 14 0.00047 38.8 0.3 32 820-851 355-391 (406)
379 2eom_A ZFP-95, zinc finger pro 27.6 27 0.00093 22.4 1.7 15 856-870 11-25 (46)
380 2yth_A Zinc finger protein 224 27.6 24 0.00081 22.6 1.4 15 856-870 11-25 (46)
381 1dl6_A Transcription factor II 27.5 16 0.00056 25.6 0.5 12 819-830 8-19 (58)
382 1wig_A KIAA1808 protein; LIM d 27.4 22 0.00077 26.2 1.3 16 823-838 6-21 (73)
383 3d00_A Tungsten formylmethanof 27.3 16 0.00054 33.3 0.6 25 821-850 162-186 (191)
384 4gyx_A Type III collagen fragm 27.0 59 0.002 18.1 2.5 20 4-23 3-24 (31)
385 1sp2_A SP1F2; zinc finger, tra 26.6 27 0.00094 19.7 1.4 13 857-869 2-16 (31)
386 2en9_A Zinc finger protein 28 26.6 26 0.00088 22.4 1.4 14 856-869 11-24 (46)
387 2emg_A Zinc finger protein 484 26.5 25 0.00086 22.5 1.4 15 856-870 11-25 (46)
388 1njq_A Superman protein; zinc- 26.5 14 0.00048 22.7 0.0 13 857-869 6-18 (39)
389 1lv3_A Hypothetical protein YA 26.0 17 0.00057 26.3 0.4 12 857-868 9-20 (68)
390 3ra3_A P1C; coiled coil domain 25.8 87 0.003 17.0 3.3 24 40-63 2-25 (28)
391 1sfc_A VAMP 2, protein (synapt 25.7 2.4E+02 0.0082 22.1 7.3 36 41-76 33-68 (96)
392 1g47_A Pinch protein; LIM doma 25.6 25 0.00086 26.1 1.3 11 823-833 12-22 (77)
393 2em0_A Zinc finger protein 224 25.6 33 0.0011 21.9 1.8 15 856-870 11-25 (46)
394 2ytr_A Zinc finger protein 347 25.4 31 0.0011 22.0 1.7 15 856-870 11-25 (46)
395 2yrm_A B-cell lymphoma 6 prote 25.4 29 0.001 21.8 1.5 14 856-869 9-22 (43)
396 2e6r_A Jumonji/ARID domain-con 25.2 5.2 0.00018 31.4 -2.7 11 822-832 16-26 (92)
397 2xv5_A Lamin-A/C; structural p 24.9 2.1E+02 0.0072 21.1 8.0 18 677-694 35-52 (74)
398 2yu5_A Zinc finger protein 473 24.8 17 0.00059 23.0 0.3 15 856-870 11-25 (44)
399 3iyn_Q Protein IX, PIX, hexon- 24.6 2.8E+02 0.0096 22.4 7.6 30 47-76 100-129 (140)
400 1v6g_A Actin binding LIM prote 24.4 24 0.00082 26.6 1.0 16 823-838 16-31 (81)
401 3f6q_B LIM and senescent cell 24.1 26 0.00089 25.5 1.2 26 823-848 12-42 (72)
402 3vhs_A ATPase wrnip1; zinc fin 24.1 9.4 0.00032 20.9 -0.9 9 859-867 8-16 (29)
403 2eop_A Zinc finger protein 268 24.1 30 0.001 22.0 1.4 15 856-870 11-25 (46)
404 1x3h_A Leupaxin; paxillin fami 24.0 43 0.0015 25.0 2.4 11 824-834 17-27 (80)
405 2i50_A Ubiquitin carboxyl-term 23.9 14 0.00046 31.0 -0.5 23 823-845 29-65 (126)
406 2kgg_A Histone demethylase jar 23.9 25 0.00087 23.9 1.0 41 824-864 4-52 (52)
407 2d9k_A FLN29 gene product; zin 23.9 12 0.00042 27.8 -0.8 16 857-872 43-58 (75)
408 2epx_A Zinc finger protein 28 23.7 31 0.0011 22.0 1.4 15 856-870 11-25 (47)
409 2rpc_A Zinc finger protein ZIC 23.7 52 0.0018 28.4 3.3 48 823-870 63-135 (155)
410 1zfd_A SWI5; DNA binding motif 23.7 34 0.0012 19.4 1.5 14 857-870 3-18 (32)
411 2epv_A Zinc finger protein 268 23.7 18 0.00061 23.0 0.1 14 856-869 11-24 (44)
412 2jvx_A NF-kappa-B essential mo 23.7 15 0.00051 21.3 -0.2 16 822-837 3-18 (28)
413 2ytn_A Zinc finger protein 347 23.6 30 0.001 22.1 1.3 15 856-870 11-25 (46)
414 3qne_A Seryl-tRNA synthetase, 23.5 3.2E+02 0.011 28.9 9.6 26 413-438 78-103 (485)
415 2epc_A Zinc finger protein 32; 23.5 19 0.00063 22.5 0.2 14 856-869 10-23 (42)
416 2eoy_A Zinc finger protein 473 23.5 19 0.00066 23.1 0.3 15 856-870 11-25 (46)
417 1x6a_A LIMK-2, LIM domain kina 23.4 28 0.00096 26.2 1.2 15 824-838 17-31 (81)
418 2i13_A AART; DNA binding, zinc 23.3 36 0.0012 30.8 2.2 14 856-869 160-173 (190)
419 2cor_A Pinch protein; LIM doma 23.3 29 0.00098 26.1 1.3 31 822-852 41-71 (79)
420 2ytq_A Zinc finger protein 268 23.2 34 0.0011 21.9 1.5 15 856-870 11-25 (46)
421 1x64_A Alpha-actinin-2 associa 23.2 30 0.001 26.7 1.4 33 822-854 51-84 (89)
422 2elz_A Zinc finger protein 224 23.1 32 0.0011 21.9 1.4 15 856-870 11-25 (46)
423 2jp9_A Wilms tumor 1; DNA bind 23.0 36 0.0012 27.7 2.0 14 856-869 93-108 (119)
424 1gk4_A Vimentin; intermediate 22.6 2.5E+02 0.0087 21.2 12.4 76 627-705 2-77 (84)
425 3hhm_B NISH2 P85alpha; PI3KCA, 22.6 6.1E+02 0.021 25.7 15.9 131 655-785 127-259 (373)
426 2ept_A Zinc finger protein 32; 22.4 20 0.00068 22.2 0.2 14 856-869 9-22 (41)
427 1x4v_A Hypothetical protein LO 22.4 83 0.0028 22.4 3.3 43 824-870 14-59 (63)
428 2epz_A Zinc finger protein 28 22.4 34 0.0012 21.8 1.4 14 856-869 11-24 (46)
429 2eoj_A Zinc finger protein 268 22.3 20 0.00067 22.7 0.1 14 856-869 11-24 (44)
430 2el5_A Zinc finger protein 268 22.3 20 0.00067 22.4 0.1 14 856-869 9-22 (42)
431 3iuf_A Zinc finger protein UBI 22.2 19 0.00066 23.6 0.1 14 856-869 6-19 (48)
432 1wt6_A Myotonin-protein kinase 22.2 2.5E+02 0.0085 21.0 9.9 59 588-646 14-72 (81)
433 1mm2_A MI2-beta; PHD, zinc fin 22.1 18 0.00062 25.6 -0.1 46 821-866 8-56 (61)
434 3m91_A Proteasome-associated A 22.0 1.9E+02 0.0065 19.5 7.0 42 597-638 8-49 (51)
435 3iox_A AGI/II, PA; alpha helix 22.0 7E+02 0.024 26.1 16.2 102 657-758 5-107 (497)
436 1gd2_E Transcription factor PA 21.9 2.4E+02 0.0081 20.6 5.9 46 594-639 25-70 (70)
437 1erd_A Pheromone ER-2; NMR {Eu 21.8 21 0.00071 21.0 0.2 10 839-848 11-20 (40)
438 2dlo_A Thyroid receptor-intera 21.8 43 0.0015 25.1 2.0 35 823-860 42-78 (81)
439 4dzn_A Coiled-coil peptide CC- 21.7 1.2E+02 0.0041 17.1 4.0 29 506-534 2-30 (33)
440 2dq0_A Seryl-tRNA synthetase; 21.6 3.6E+02 0.012 28.4 9.7 72 361-432 31-102 (455)
441 4e61_A Protein BIM1; EB1-like 21.6 3.1E+02 0.011 21.8 8.0 48 725-772 5-52 (106)
442 1wem_A Death associated transc 21.2 17 0.00059 27.2 -0.4 50 820-870 14-74 (76)
443 3vp9_A General transcriptional 21.2 2.1E+02 0.0071 22.2 5.5 73 595-670 11-84 (92)
444 2en2_A B-cell lymphoma 6 prote 21.1 21 0.00072 22.2 0.1 14 856-869 10-23 (42)
445 2yts_A Zinc finger protein 484 21.1 22 0.00074 22.8 0.1 14 856-869 11-24 (46)
446 2emi_A Zinc finger protein 484 21.0 22 0.00076 22.8 0.2 14 856-869 11-24 (46)
447 2cuq_A Four and A half LIM dom 21.0 42 0.0014 25.1 1.8 34 823-856 42-76 (80)
448 2en3_A ZFP-95, zinc finger pro 20.9 23 0.00078 22.7 0.2 15 856-870 11-25 (46)
449 3l4q_C Phosphatidylinositol 3- 20.7 4.3E+02 0.015 23.2 18.8 132 660-791 9-156 (170)
450 2yto_A Zinc finger protein 484 20.7 23 0.00078 22.7 0.2 14 856-869 11-24 (46)
451 2emj_A Zinc finger protein 28 20.7 23 0.00077 22.8 0.2 14 856-869 11-24 (46)
452 2epp_A POZ-, at HOOK-, and zin 20.6 45 0.0015 24.0 1.8 14 856-869 12-25 (66)
453 2k48_A Nucleoprotein; viral pr 20.6 3.1E+02 0.011 21.5 9.5 57 598-654 35-103 (107)
454 2eow_A Zinc finger protein 347 20.6 23 0.00077 22.7 0.1 14 856-869 11-24 (46)
455 2epa_A Krueppel-like factor 10 20.6 43 0.0015 24.1 1.8 42 821-869 16-61 (72)
456 1nui_A DNA primase/helicase; z 20.5 20 0.00067 34.7 -0.2 23 825-848 17-39 (255)
457 2l5u_A Chromodomain-helicase-D 20.4 30 0.001 24.5 0.8 45 821-865 10-57 (61)
458 2yrj_A Zinc finger protein 473 20.3 23 0.0008 22.6 0.2 14 856-869 11-24 (46)
459 2emb_A Zinc finger protein 473 20.3 22 0.00076 22.4 0.1 14 856-869 11-24 (44)
460 1yui_A GAGA-factor; complex (D 20.1 23 0.00079 23.8 0.1 14 856-869 23-36 (54)
461 1fp0_A KAP-1 corepressor; PHD 20.0 32 0.0011 26.5 0.9 52 820-871 23-77 (88)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=8.3e-14 Score=123.59 Aligned_cols=49 Identities=33% Similarity=0.712 Sum_probs=44.1
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
+.+.|+||++.|.+|++++|||+||..|+..|+. ....||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC
Confidence 3489999999999999999999999999999998 466799999999654
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.41 E-value=7.5e-14 Score=110.42 Aligned_cols=58 Identities=26% Similarity=0.521 Sum_probs=52.3
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+...+.|+||+..|.+|++++|||+||..|+..|+..+...||.|+.++...++.+++
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 4557999999999999999999999999999999986578899999999988887765
No 3
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=120.42 Aligned_cols=59 Identities=20% Similarity=0.486 Sum_probs=50.8
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC-CCCcccC
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP-NDVKPVY 876 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~-~~~~~~~ 876 (877)
.+...+.|+||+..|.+|++++|||+||..|+..|+......||.||.+|.. .++.+++
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 107 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCH
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCH
Confidence 3444589999999999999999999999999999998666789999999987 6666553
No 4
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.38 E-value=7.3e-14 Score=115.88 Aligned_cols=60 Identities=22% Similarity=0.670 Sum_probs=52.4
Q ss_pred HhccCcccccccccccccccc-cccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 817 REYREILKCSICLERPKEVVI-TKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~-~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
..+...+.|+||++.|.+|++ ++|||+||..|+..|+......||.||.+|...++.+++
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 344455999999999999999 999999999999999986657899999999988877665
No 5
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=1.1e-13 Score=107.34 Aligned_cols=57 Identities=30% Similarity=0.832 Sum_probs=51.7
Q ss_pred cCcccccccccccccc-------cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 820 REILKCSICLERPKEV-------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~-------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
...+.|+||++.+.++ +.++|||+||..|+..|+.. ...||+||.++...+++++||
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeeccC
Confidence 3468999999999887 78899999999999999985 467999999999999999997
No 6
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=9.4e-14 Score=110.43 Aligned_cols=60 Identities=27% Similarity=0.592 Sum_probs=53.2
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccC------CCCCCCCCCCCCCCCCcccCC
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR------HRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~------~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
.+...+.|+||++.|.+|++++|||+||..|+..|+... ...||.||.++...++.+++.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 456679999999999999999999999999999998853 568999999999988888763
No 7
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2e-13 Score=103.32 Aligned_cols=56 Identities=18% Similarity=0.533 Sum_probs=49.5
Q ss_pred ccccccccc-ccccc----cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 822 ILKCSICLE-RPKEV----VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 822 ~l~C~~C~~-~~~~~----~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
.+.|+||++ .+.+| ++++|||+||..|+..|+......||.|+.++...++++++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecc
Confidence 578999999 88887 468999999999999997756678999999999999988775
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.2e-13 Score=102.58 Aligned_cols=55 Identities=27% Similarity=0.548 Sum_probs=49.1
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCC
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
.+...+.|+||++.+.+|+.++|||+||..|+..|+......||.|+.++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3456789999999999999999999999999999996556789999999988776
No 9
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.36 E-value=1.9e-13 Score=112.07 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=51.7
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+-..+.||||+..|.+||+++|||+||..||..|+. ....||+|+.++...++.+++
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECH
Confidence 445689999999999999999999999999999998 467899999999998888764
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.34 E-value=1.6e-13 Score=104.00 Aligned_cols=56 Identities=30% Similarity=0.871 Sum_probs=50.8
Q ss_pred Ccccccccccccccc-------cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 821 EILKCSICLERPKEV-------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~-------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
+.+.|+||++.+.++ +.++|||+||..|+..|+.. ...||+||.++...++.++||
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 357999999999876 78899999999999999985 568999999999999999997
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.5e-13 Score=104.49 Aligned_cols=57 Identities=32% Similarity=0.709 Sum_probs=49.9
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhcc--CCCCCCCCCCCCCCCCCc
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTES--RHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~--~~~~Cp~c~~~~~~~~~~ 873 (877)
..+...+.|+||++.+.+|++++|||+||..|+..|+.. ....||+|+.+|...+++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 345667899999999999999999999999999999973 466899999999888764
No 12
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.34 E-value=1.9e-12 Score=117.01 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=51.5
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+-..+.||||+..|.+||+++|||+||..||..|+......||+|+.+|...++.+++
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 3456899999999999999999999999999999986444799999999988888775
No 13
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.33 E-value=2.2e-13 Score=108.45 Aligned_cols=57 Identities=7% Similarity=-0.040 Sum_probs=51.1
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+-..+.|+||+..|.+||+++|||+||..||..|+.. ...||+|+.+|...++.+++
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHH
Confidence 4456999999999999999999999999999999984 67899999999988887764
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1e-12 Score=112.66 Aligned_cols=66 Identities=35% Similarity=0.732 Sum_probs=54.7
Q ss_pred HHHHHHHhccCcccccccccccccccccccchhhhHHhHHHHhccC--CCCCCCCCCCCCCCCCcccC
Q 002816 811 ELQQELREYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 811 ~l~~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.+...+..+...+.|+||+..+.+|++++|||+||..|+..|+... ...||+|+.++...++.+++
T Consensus 10 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 10 EVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred HHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 3344445555668999999999999999999999999999999853 35899999999988887764
No 15
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.31 E-value=6.6e-13 Score=108.43 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=51.5
Q ss_pred ccCcccccccccccccccccccc-hhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 819 YREILKCSICLERPKEVVITKCY-HLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~-h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+-..+.||||++.|.+||+++|| |+||..||..|+.. ...||+|+.++...++.+++
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcH
Confidence 44569999999999999999999 99999999999984 67899999999998888764
No 16
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.30 E-value=5.3e-13 Score=119.30 Aligned_cols=55 Identities=27% Similarity=0.619 Sum_probs=48.9
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC-CCcccC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN-DVKPVY 876 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~-~~~~~~ 876 (877)
.+.|+||+..|.+|++++|||+||..|+..|+......||+||.++... .+.+++
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCH
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCH
Confidence 4899999999999999999999999999999986666899999999877 555553
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=6.9e-13 Score=102.66 Aligned_cols=58 Identities=22% Similarity=0.535 Sum_probs=50.4
Q ss_pred HhccCccccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 817 REYREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
..+...+.|+||++.+.+|+++ +|||+||..|+..|+.. ...||+|+.+|...++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3456678999999999999987 99999999999999974 5689999999998887654
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.30 E-value=5.6e-13 Score=109.28 Aligned_cols=59 Identities=22% Similarity=0.561 Sum_probs=49.3
Q ss_pred hccCcccccccccccccccccc-cchhhhHHhHHHHhccC-CCCCCCCCCCC-CCCCCcccC
Q 002816 818 EYREILKCSICLERPKEVVITK-CYHLFCNPCVQKVTESR-HRKCPGCAASF-SPNDVKPVY 876 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~-c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~-~~~~~~~~~ 876 (877)
.+...+.|+||++.|.+|++++ |||+||..|+..|+... ...||.|+.+| ...++.+++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 70 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANK 70 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECH
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCH
Confidence 4566799999999999999999 99999999999998643 46899999998 455665543
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=8.8e-13 Score=106.78 Aligned_cols=59 Identities=36% Similarity=0.740 Sum_probs=52.5
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccC-----CCCCCCCCCCCCCCCCcccC
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESR-----HRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~-----~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.+...+.|+||+..|.+|++++|||+||..|+..|+... ...||.|+.++...++.+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 456678999999999999999999999999999999862 66899999999998888776
No 20
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.29 E-value=8.3e-08 Score=98.24 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 742 DVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRR 794 (877)
Q Consensus 742 ~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~ 794 (877)
.+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..
T Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
T 1c1g_A 227 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALN 279 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333444444443333
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=9.9e-13 Score=106.47 Aligned_cols=61 Identities=28% Similarity=0.690 Sum_probs=53.5
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhcc-----CCCCCCCCCCCCCCCCCcccCC
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTES-----RHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~-----~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
..+...+.|+||+..+.+|++++|||+||..|+..|+.. ....||.|+..+...++.+++.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 345667999999999999999999999999999999875 2678999999999999888763
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=9.2e-13 Score=102.41 Aligned_cols=54 Identities=22% Similarity=0.587 Sum_probs=46.6
Q ss_pred hccCcccccccccccccccccc-cchhhhHHhHHHHhccC-CCCCCCCCCCCCCCC
Q 002816 818 EYREILKCSICLERPKEVVITK-CYHLFCNPCVQKVTESR-HRKCPGCAASFSPND 871 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~-c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~~~~ 871 (877)
.+...+.|+||++.|.+|++++ |||+||..|+..|+... ...||.||.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4556789999999999999999 99999999999999853 368999999976544
No 23
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.26 E-value=6.7e-13 Score=110.39 Aligned_cols=54 Identities=30% Similarity=0.767 Sum_probs=48.1
Q ss_pred ccccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 822 ILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.+.|+||+..|.+|+++ +|||+||..|+..|+.. ...||.|+.++...++.+++
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~ 76 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNR 76 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCH
Confidence 38999999999999988 89999999999999984 56899999999887777664
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.9e-12 Score=105.39 Aligned_cols=58 Identities=29% Similarity=0.674 Sum_probs=49.8
Q ss_pred hccCccccccccccccc----ccccccchhhhHHhHHHHhccC--CCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKE----VVITKCYHLFCNPCVQKVTESR--HRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~--~~~Cp~c~~~~~~~~~~~~ 875 (877)
.+...+.|+||++.|.+ |++++|||+||..|+..|+... ...||+||.++...++..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 45667899999999998 9999999999999999999854 4689999999988766543
No 25
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=1.5e-12 Score=111.82 Aligned_cols=60 Identities=30% Similarity=0.599 Sum_probs=52.1
Q ss_pred HHHHhccCccccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 814 QELREYREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 814 ~~~~~l~~~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
..+..+...+.|+||+..|.+|+++ +|||+||..|+..|+. ..||.|+.++...++.+++
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~ 74 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINR 74 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCH
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccH
Confidence 3445556679999999999999999 9999999999999987 6799999999888887765
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.3e-12 Score=102.48 Aligned_cols=49 Identities=27% Similarity=0.600 Sum_probs=44.3
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
....+.|+||+..|.+|++++|||+||..|+..|+.. ...||+|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 4456899999999999999999999999999999974 667999999986
No 27
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=2.7e-12 Score=108.57 Aligned_cols=52 Identities=25% Similarity=0.629 Sum_probs=46.3
Q ss_pred hccCccccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 818 EYREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+...+.|+||+..|.+|+++ +|||+||..|+..|+.. ...||.|+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 445669999999999999997 99999999999999985 47899999999865
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.9e-12 Score=99.79 Aligned_cols=52 Identities=25% Similarity=0.607 Sum_probs=45.6
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCc
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 873 (877)
..+.|+||++.+.++++++|||+||..|+..|+.. ...||+||..|...++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhcc
Confidence 45799999999999999999999999999999884 46899999999765543
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=4.7e-12 Score=95.10 Aligned_cols=47 Identities=34% Similarity=0.782 Sum_probs=41.8
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhcc--CCCCCCCC
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTES--RHRKCPGC 863 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~--~~~~Cp~c 863 (877)
+.+...+.|+||++.+.+|++++|||+||..|+..|+.. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346677999999999999999999999999999999974 45689998
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=1.2e-11 Score=95.74 Aligned_cols=55 Identities=16% Similarity=0.585 Sum_probs=45.4
Q ss_pred ccCcccccccccccc--cccccc--cchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCc
Q 002816 819 YREILKCSICLERPK--EVVITK--CYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 819 l~~~l~C~~C~~~~~--~~~~~~--c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 873 (877)
+...+.|+||++.+. ++++++ |||.||..|+..++......||.||.+|...++.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 566789999999884 455665 9999999999999865667899999999876653
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=7.4e-12 Score=107.56 Aligned_cols=52 Identities=31% Similarity=0.723 Sum_probs=47.6
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcc
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKP 874 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~ 874 (877)
+.|+||+..+.+|+.++|||+||..|+..|+......||.|+.+|...++.+
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 8999999999999999999999999999999865678999999998877654
No 32
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.17 E-value=3.6e-12 Score=98.60 Aligned_cols=57 Identities=32% Similarity=0.740 Sum_probs=47.1
Q ss_pred HHHHhccCcccccccccccccccccccchh-hhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 814 QELREYREILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 814 ~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
+.++.+...+.|+||++.+.++++++|||. ||..|+..| ..||+||.+|.. +.++||
T Consensus 16 ~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~ 73 (74)
T 4ic3_A 16 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF--KQKILM 73 (74)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE--EEECBC
T ss_pred HHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC--cEEEee
Confidence 444455566899999999999999999999 999999887 569999999964 556664
No 33
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=4e-12 Score=103.61 Aligned_cols=57 Identities=26% Similarity=0.468 Sum_probs=48.4
Q ss_pred cCcccccccccccccccccc-cchhhhHHhHHHHhccC-----CCCCCC--CCCC-CCCCCCcccC
Q 002816 820 REILKCSICLERPKEVVITK-CYHLFCNPCVQKVTESR-----HRKCPG--CAAS-FSPNDVKPVY 876 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~-c~h~~c~~C~~~~~~~~-----~~~Cp~--c~~~-~~~~~~~~~~ 876 (877)
...+.||||+..|.+||+++ |||+||..||..|+... ...||+ |+.. +...++.+++
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 45689999999999999996 99999999999999753 468999 8877 7777777654
No 34
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.14 E-value=6.2e-12 Score=128.65 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=50.3
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
..+.||||+..|.+||+++|||+||..||..|+......||+|+.++...++.+++
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH
Confidence 45899999999999999999999999999999986555699999999988887764
No 35
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-11 Score=95.84 Aligned_cols=57 Identities=32% Similarity=0.769 Sum_probs=46.3
Q ss_pred HHHHhccCcccccccccccccccccccchh-hhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 814 QELREYREILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 814 ~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
+.+..+...+.|+||++.+.++++++|||. ||..|+... ..||+||.++.. +.++|+
T Consensus 17 ~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~~ 74 (75)
T 2ecg_A 17 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF--KQKIFM 74 (75)
T ss_dssp HHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC--CCBCCC
T ss_pred HHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC--cEEEec
Confidence 344455556899999999999999999999 999999643 569999999955 566664
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=90.60 Aligned_cols=46 Identities=41% Similarity=0.837 Sum_probs=40.8
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhcc--CCCCCCCC
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTES--RHRKCPGC 863 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~--~~~~Cp~c 863 (877)
.+...+.|+||++.+.+|++++|||+||..|+..|+.. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45667899999999999999999999999999999654 56789998
No 37
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.13 E-value=8.1e-12 Score=107.40 Aligned_cols=58 Identities=31% Similarity=0.582 Sum_probs=50.5
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
.+...+.|+||+..+.+|++++|||+||..|+..|+......||+||.++...++.++
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 4566789999999999999999999999999999998655689999999987766543
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=6.2e-12 Score=115.76 Aligned_cols=51 Identities=31% Similarity=0.789 Sum_probs=45.3
Q ss_pred ccCccccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
+...+.|+||+..|.+|+++ +|||+||..|+..|+......||.|+.++..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34458999999999999987 9999999999999999657789999999964
No 39
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=94.80 Aligned_cols=50 Identities=28% Similarity=0.778 Sum_probs=43.7
Q ss_pred ccCcccccccccccccc-------cccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEV-------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~-------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
+...+.|+||++.|.++ ++++|||+||..|+..|+.. ...||+||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568999999999887 78899999999999999985 5679999999864
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=6.3e-12 Score=107.84 Aligned_cols=48 Identities=35% Similarity=0.716 Sum_probs=43.8
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
.+.|+||+..|.+|++++|||+||..|+..|+......||.|+..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 379999999999999999999999999999998667789999999863
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.11 E-value=2.4e-11 Score=95.84 Aligned_cols=56 Identities=27% Similarity=0.527 Sum_probs=46.5
Q ss_pred ccCcccccccccccccc---cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 819 YREILKCSICLERPKEV---VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~---~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
....+.|+||++.|..+ +.++|||+||..|+..|+.. ...||+||..|...++.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 34568999999998764 45699999999999999984 5689999999988877653
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=8.5e-12 Score=96.08 Aligned_cols=56 Identities=29% Similarity=0.764 Sum_probs=47.8
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
.+...+.|+||++.+.+ ++++|||+||..|+..|+. ....||+||.++...+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCcccc
Confidence 45567899999999998 8999999999999999988 56789999999987665443
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=1.5e-11 Score=89.09 Aligned_cols=47 Identities=26% Similarity=0.701 Sum_probs=40.9
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
..+.|+||+..|.+|++++|||+||..|+..+ ...||+||..+...+
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 46899999999999999999999999999763 457999999987543
No 44
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.10 E-value=8.5e-12 Score=97.39 Aligned_cols=59 Identities=31% Similarity=0.737 Sum_probs=48.4
Q ss_pred HHHHHHHhccCcccccccccccccccccccchh-hhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 811 ELQQELREYREILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 811 ~l~~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
.++++++.+.....|+||++.+.+++++||||. ||..|+..+ ..||+||.++.. +.++|
T Consensus 7 ~l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~--~~~i~ 66 (79)
T 2yho_A 7 VLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH--VQHVY 66 (79)
T ss_dssp THHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE--EEECB
T ss_pred HHHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC--eEEEE
Confidence 355666667777899999999999999999999 999999865 369999999865 34444
No 45
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.04 E-value=6e-11 Score=86.31 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=41.0
Q ss_pred Cccccccccccccc----ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKE----VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 821 ~~l~C~~C~~~~~~----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
....|+||++.+.+ +++++|||+||..|+..|+... ..||+||.+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 34789999999865 6788999999999999999865 77999999885
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=7.3e-11 Score=85.79 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=41.5
Q ss_pred ccCccccccccccccc---ccccc-cchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKE---VVITK-CYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~---~~~~~-c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
+.....|+||++.+.. ++.++ |||.||..|+..|+.. ...||+||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3456899999999977 66776 9999999999999984 668999998874
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.03 E-value=7.4e-11 Score=95.72 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=41.7
Q ss_pred Cccccccccccccc---ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKE---VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 821 ~~l~C~~C~~~~~~---~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
....|+||+..|.. ++.++|||.||..|+..|+. ....||+||..|..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 45789999998876 67789999999999999998 45689999998864
No 48
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.03 E-value=6.3e-11 Score=90.60 Aligned_cols=47 Identities=30% Similarity=0.808 Sum_probs=41.4
Q ss_pred cccccccccccccc-cccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
...|+||+..+.++ +.++|||+||..|+..|+.. ...||.||.++..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 46899999999986 78899999999999999984 4689999999863
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.02 E-value=3.1e-11 Score=106.36 Aligned_cols=52 Identities=19% Similarity=0.491 Sum_probs=46.2
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
..+...+.|+||...+.+|+.++|||+||..|+..|+......||.||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3566779999999999999999999999999999999866668999998754
No 50
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.01 E-value=4.9e-11 Score=87.13 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=49.5
Q ss_pred cccccccccccccccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 823 LKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
+.|+||++.|.+||++ +|||+||..||..|+.. ...||+++.++...|+.++++
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 7899999999999999 99999999999999984 456999999999999988864
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=8.8e-11 Score=104.49 Aligned_cols=56 Identities=30% Similarity=0.848 Sum_probs=50.1
Q ss_pred Ccccccccccccccc-------cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 821 EILKCSICLERPKEV-------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~-------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
+.+.|+||++.|.+| +.++|||+||..|+..|+.. ...||+|+..|...++.++|+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccccc
Confidence 468999999999988 88999999999999999984 558999999999998887764
No 52
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.9e-11 Score=112.68 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=51.1
Q ss_pred HhccCccccccccccccccccc-ccchhhhHHhHHHHhccC-CCCCCC--CCCCCCCCCCcccC
Q 002816 817 REYREILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESR-HRKCPG--CAASFSPNDVKPVY 876 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~-~~~Cp~--c~~~~~~~~~~~~~ 876 (877)
......+.||||+..|.+||+. .|||+||..||..|+... ...||+ |+..+...++.+++
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~ 239 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP 239 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCH
Confidence 3456678999999999999985 999999999999999753 457999 99999888877653
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.98 E-value=1.2e-10 Score=86.75 Aligned_cols=53 Identities=36% Similarity=0.733 Sum_probs=45.4
Q ss_pred ccccccccccccccccc--ccchh-hhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 822 ILKCSICLERPKEVVIT--KCYHL-FCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~--~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
...|+||++.+.+++++ +|||. ||..|+..|.. ....||+||.++. .+.++|+
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~--~~i~i~~ 63 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ--MIVLTYF 63 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC--EEEEEEC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh--ceEeeec
Confidence 46899999999999987 99999 79999999987 4567999999984 4666664
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.97 E-value=1.7e-10 Score=117.37 Aligned_cols=55 Identities=31% Similarity=0.635 Sum_probs=47.5
Q ss_pred ccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCc
Q 002816 819 YREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 873 (877)
......|+||++.+.+|+.++|||+||..|+..|.......||+||.++....+.
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 3445799999999999999999999999999999885677899999999765443
No 55
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=1.7e-10 Score=88.44 Aligned_cols=49 Identities=33% Similarity=0.674 Sum_probs=41.0
Q ss_pred cCcccccccccccc---cccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 820 REILKCSICLERPK---EVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 820 ~~~l~C~~C~~~~~---~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
.....|+||+..|. .++.++|||+||..|+..|+.. ...||+||..|..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 34578999998884 3567899999999999999985 4569999999865
No 56
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-10 Score=90.65 Aligned_cols=49 Identities=31% Similarity=0.638 Sum_probs=42.1
Q ss_pred Ccccccccccccccc---cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEV---VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~---~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
....|+||++.|..+ +.++|||+||..|+..|+.. ...||+||..|...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 457899999998876 67899999999999999985 46799999998653
No 57
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.96 E-value=4.2e-10 Score=136.63 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 002816 736 TQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQTEG 805 (877)
Q Consensus 736 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~~~~ 805 (877)
+...+..+...+..+...+..++..+..+...+.+.......+......+..++..++..|..++++|..
T Consensus 1100 l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn~a 1169 (1184)
T 1i84_S 1100 ALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169 (1184)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333333333333344444444444444444444433334444445667777888888888888887653
No 58
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.5e-10 Score=88.87 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=41.9
Q ss_pred ccCcccccccccccccccc---cccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVVI---TKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~---~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
+.....|+||++.|..+.. ++|||+||..|+..|+.. ...||+||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4556899999999976544 499999999999999985 4579999999865
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.93 E-value=1.6e-10 Score=85.72 Aligned_cols=53 Identities=30% Similarity=0.688 Sum_probs=44.3
Q ss_pred ccccccccccccccccc--ccchh-hhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 822 ILKCSICLERPKEVVIT--KCYHL-FCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~--~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
...|+||++.+.+++++ ||||. ||..|+..+... ...||+||.++. ++.++|+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~--~~i~i~~ 62 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ--LVIKVFI 62 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC--EEEEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh--ceEEEec
Confidence 46899999999998877 99999 899999998863 467999999984 4666653
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=1.4e-10 Score=103.25 Aligned_cols=56 Identities=30% Similarity=0.848 Sum_probs=50.4
Q ss_pred Ccccccccccccccc-------cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 821 EILKCSICLERPKEV-------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~-------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
..+.|+||++.+..+ +.++|||+||..|+..|+.. ...||.||.++..++++++||
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence 457899999988876 78899999999999999985 568999999999999999997
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.92 E-value=2e-10 Score=106.34 Aligned_cols=58 Identities=31% Similarity=0.594 Sum_probs=50.6
Q ss_pred HhccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcc
Q 002816 817 REYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKP 874 (877)
Q Consensus 817 ~~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~ 874 (877)
..+...+.|+||+..+.+|+.++|||+||..|+..|+......||.||.++...++.+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 3456679999999999999999999999999999999865568999999998876654
No 62
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.91 E-value=4.6e-10 Score=96.09 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=40.2
Q ss_pred cccccccccccccc------------------ccccchhhhHHhHHHHhcc----CCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVV------------------ITKCYHLFCNPCVQKVTES----RHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~------------------~~~c~h~~c~~C~~~~~~~----~~~~Cp~c~~~~~~~ 870 (877)
..|+||++.|..++ .++|||+||..||..|+.. ....||+||..|...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 58999999986654 6799999999999999952 356899999999654
No 63
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.86 E-value=3e-09 Score=129.21 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=8.1
Q ss_pred HHhHhhchhHHHHHHHHHH
Q 002816 153 EEDRETGIPRTKNIVSNIL 171 (877)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~ 171 (877)
..+...+-...+....++.
T Consensus 420 ~~a~~~rdalak~lY~~lF 438 (1184)
T 1i84_S 420 EQADFAIEALAKAKFERLF 438 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=82.19 Aligned_cols=48 Identities=23% Similarity=0.597 Sum_probs=40.8
Q ss_pred cccccccccccccccccccchh-hhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 822 ILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
...|+||++.+.+++++||||. ||..|+.. ...||+||.++.. +.++|
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~--~~~i~ 63 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE--SFALS 63 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC--EECCC
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc--eEEee
Confidence 5789999999999999999999 99999984 3579999999854 44444
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.79 E-value=6.9e-10 Score=113.05 Aligned_cols=60 Identities=30% Similarity=0.762 Sum_probs=50.7
Q ss_pred HHHHHHHhccCcccccccccccccccccccchh-hhHHhHHHHhccCCCCCCCCCCCCCCCCCcccCC
Q 002816 811 ELQQELREYREILKCSICLERPKEVVITKCYHL-FCNPCVQKVTESRHRKCPGCAASFSPNDVKPVYI 877 (877)
Q Consensus 811 ~l~~~~~~l~~~l~C~~C~~~~~~~~~~~c~h~-~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~~ 877 (877)
.+.+++..+...+.|+||++.+.+|+++||||+ ||..|+..+ ..||+||.+|.. +.++|+
T Consensus 284 ~~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~--~~~i~~ 344 (345)
T 3t6p_A 284 SLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG--TVRTFL 344 (345)
T ss_dssp CHHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE--EEECC-
T ss_pred cHHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC--eEEeec
Confidence 456777788888999999999999999999999 999999876 569999999954 555553
No 66
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.7e-09 Score=85.23 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=39.3
Q ss_pred ccccccccccccc--------------cccc-ccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE--------------VVIT-KCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~--------------~~~~-~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
...|+||+..|.+ ++.+ +|||.||..|+..|+.. ...||+||.+|...+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchhh
Confidence 3579999988865 3344 59999999999999985 468999999986543
No 67
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.66 E-value=8e-09 Score=85.16 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=39.5
Q ss_pred cccccccccccccc------------------cccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEV------------------VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~------------------~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
.-.|+||...|..+ +.++|||.|+..||..|+.. ...||+||..|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCccee
Confidence 35799999988765 33699999999999999985 6689999999853
No 68
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.63 E-value=1.4e-05 Score=78.70 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=19.9
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
-.|..|+-.++..... -+.. ......||.|+..+..
T Consensus 199 ~~C~GC~~~lppq~~~---------~i~~--~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 199 QACGGCFIRLNDKIYT---------EVLT--SGDMITCPYCGRILYA 234 (256)
T ss_dssp TBCTTTCCBCCHHHHH---------HHHH--SSSCEECTTTCCEEEC
T ss_pred CccCCCCeeeCHHHHH---------HHHC--CCCEEECCCCCeeEEe
Confidence 4799888777532110 1111 1234579999876643
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=4.6e-09 Score=85.86 Aligned_cols=52 Identities=25% Similarity=0.658 Sum_probs=41.4
Q ss_pred Cccccccccccccccccc---ccchhhhHHhHHHHhccC-------CCCCCC--CCCC--CCCCCC
Q 002816 821 EILKCSICLERPKEVVIT---KCYHLFCNPCVQKVTESR-------HRKCPG--CAAS--FSPNDV 872 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~---~c~h~~c~~C~~~~~~~~-------~~~Cp~--c~~~--~~~~~~ 872 (877)
..+.|+||++.+..++++ +|||.||..|+..++... ...||. |+.. +...++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 458999999999887654 799999999999998741 357999 9998 654443
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.57 E-value=7e-09 Score=86.51 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=0.0
Q ss_pred cccccccccccccc------------------ccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVV------------------ITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~------------------~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
-.|+||++.|..+. .++|||.||..||..|+.. ...||+||.+|...
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ 113 (117)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeeee
Confidence 47999999886532 2489999999999999985 56799999998644
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.30 E-value=2.3e-07 Score=72.13 Aligned_cols=45 Identities=27% Similarity=0.642 Sum_probs=38.8
Q ss_pred cccccccccccc-cccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 824 KCSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 824 ~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
-|+.|.-++..- .++||+|+||++|+..|...+...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 589999988763 467999999999999998767788999999885
No 72
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=5.9e-07 Score=69.60 Aligned_cols=50 Identities=28% Similarity=0.500 Sum_probs=41.4
Q ss_pred cccccccccccc--cccccccc-----hhhhHHhHHHHhccC-CCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPK--EVVITKCY-----HLFCNPCVQKVTESR-HRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~--~~~~~~c~-----h~~c~~C~~~~~~~~-~~~Cp~c~~~~~~~~ 871 (877)
...|.||+..|. +++++||+ |.|...|+..|+... ...||+|+..|....
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 368999998774 57788996 999999999999864 368999999997543
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=1.5e-05 Score=60.01 Aligned_cols=49 Identities=24% Similarity=0.503 Sum_probs=39.7
Q ss_pred ccccccccccccccc-ccccchhhhHHhHHHHhccC-CCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTESR-HRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~-~~~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~~~ 870 (877)
.-.|.||+..+.... ...|+|.|=..|+.+|++++ ...||.|+..+...
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 468999999886432 23899999999999999865 36899999998643
No 74
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.50 E-value=0.025 Score=55.31 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=14.2
Q ss_pred HHHHhccCccccccccccccc
Q 002816 814 QELREYREILKCSICLERPKE 834 (877)
Q Consensus 814 ~~~~~l~~~l~C~~C~~~~~~ 834 (877)
..+..-...+.||.|+-.+..
T Consensus 214 ~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 214 TEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp HHHHHSSSCEECTTTCCEEEC
T ss_pred HHHHCCCCEEECCCCCeeEEe
Confidence 444444567899999876543
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.31 E-value=0.086 Score=47.31 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDA 620 (877)
Q Consensus 588 ~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~ 620 (877)
.+...+..++..+..|...+..+..++..+...
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.29 E-value=0.091 Score=47.16 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 002816 784 RLEEDLEMGRRKV 796 (877)
Q Consensus 784 ~~~~el~~l~~~l 796 (877)
++..++..|+..+
T Consensus 165 RLkdE~rDLk~El 177 (189)
T 2v71_A 165 RLKDEARDLRQEL 177 (189)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.23 E-value=2.9e-05 Score=76.03 Aligned_cols=49 Identities=27% Similarity=0.543 Sum_probs=37.6
Q ss_pred Cccccccccccccc----c---c-ccccchhhhHHhHHHHhccCC----------CCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKE----V---V-ITKCYHLFCNPCVQKVTESRH----------RKCPGCAASFSP 869 (877)
Q Consensus 821 ~~l~C~~C~~~~~~----~---~-~~~c~h~~c~~C~~~~~~~~~----------~~Cp~c~~~~~~ 869 (877)
....|+||+..+.+ | + ..+|||.|-..|+..|+.+.. ..||+|+.+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34589999987765 2 1 248999999999999997421 369999998753
No 78
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.11 E-value=0.00031 Score=50.71 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=38.7
Q ss_pred cccccccccccccccccccc--h---hhhHHhHHHHhcc-CCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCY--H---LFCNPCVQKVTES-RHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~--h---~~c~~C~~~~~~~-~~~~Cp~c~~~~~~ 869 (877)
...|.||+....++.++||. | .|=..|+..|+.. +...||+|+..|..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46899999887777788864 3 6788999999974 36789999999853
No 79
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=96.91 E-value=0.00047 Score=58.49 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=23.3
Q ss_pred cccccccccccccc----ccccchhhhHHhHHHH
Q 002816 823 LKCSICLERPKEVV----ITKCYHLFCNPCVQKV 852 (877)
Q Consensus 823 l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~ 852 (877)
..|.+|...|+-.. .-.||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 57999999886432 2379999999998654
No 80
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.43 E-value=0.0017 Score=47.24 Aligned_cols=35 Identities=34% Similarity=0.811 Sum_probs=30.4
Q ss_pred Cccccccccccccccccccc----chhhhHHhHHHHhcc
Q 002816 821 EILKCSICLERPKEVVITKC----YHLFCNPCVQKVTES 855 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c----~h~~c~~C~~~~~~~ 855 (877)
..+.|.+|.+++-++.+..| +|.||+.|....++.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 46899999999999888777 899999999888763
No 81
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.22 E-value=2.3 Score=56.25 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 775 LVKERFAKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 775 l~~~~~~~~~~~~el~~l~~~l~~l 799 (877)
+..+..+..+....+..+...+..|
T Consensus 2079 i~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2079 LDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhccccHHHHHHHHHHHHHhc
Confidence 3333444444444444444444443
No 82
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.15 E-value=0.0031 Score=60.46 Aligned_cols=63 Identities=29% Similarity=0.526 Sum_probs=45.3
Q ss_pred hHHHHHHHHHh-cc-Cccccccccccccccccc-ccchhhhHHhHHHHhccC-CCCCCCCCCCCCCC
Q 002816 808 IIEELQQELRE-YR-EILKCSICLERPKEVVIT-KCYHLFCNPCVQKVTESR-HRKCPGCAASFSPN 870 (877)
Q Consensus 808 ~~~~l~~~~~~-l~-~~l~C~~C~~~~~~~~~~-~c~h~~c~~C~~~~~~~~-~~~Cp~c~~~~~~~ 870 (877)
.+-.|..-+.. +. ....|.+|.......+.- .|+|.|=..|+..|++++ ...||.|+.++...
T Consensus 164 ~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 164 AILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp HHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred cHHHHHHHHHHhcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 44444444432 22 367899999987654322 499999999999998765 46899999998765
No 83
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.93 E-value=0.67 Score=39.40 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 730 SANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 730 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~ 800 (877)
...+..-...+.+....+..+...-..++..+..+..++.+.+.....+.....+++.++..++..+..+.
T Consensus 54 ~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 54 QLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444555555555566666666666666666666677777777888888887777664
No 84
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.83 E-value=0.0079 Score=68.48 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=50.1
Q ss_pred cCcccccccccccccccccccc-hhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 820 REILKCSICLERPKEVVITKCY-HLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c~-h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
=..+.|||-++.|.+||+++.| |+|-+.+|..|+.. ..+||+.|.++...++.|++
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECH
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccH
Confidence 3458999999999999999998 69999999999985 66899999999998888874
No 85
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.52 E-value=0.0044 Score=50.87 Aligned_cols=32 Identities=19% Similarity=0.649 Sum_probs=26.9
Q ss_pred cccccccccc-cccccc--cccchhhhHHhHHHHh
Q 002816 822 ILKCSICLER-PKEVVI--TKCYHLFCNPCVQKVT 853 (877)
Q Consensus 822 ~l~C~~C~~~-~~~~~~--~~c~h~~c~~C~~~~~ 853 (877)
.+.|++|... +..++. +.|||.||..|+..++
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4789999975 567777 8999999999999833
No 86
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.65 E-value=1.4 Score=38.06 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CcchHHHHHHHHHhccCcc
Q 002816 775 LVKERFAKKRLEEDLEMGRRKVLRLQAQTE-GSSIIEELQQELREYREIL 823 (877)
Q Consensus 775 l~~~~~~~~~~~~el~~l~~~l~~l~~~~~-~~~~~~~l~~~~~~l~~~l 823 (877)
.......+..++.++..+-..+..|..... .+.......++|..|...|
T Consensus 96 ae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 96 AELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344555566666666666666665544 2334566666676665544
No 87
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.61 E-value=1.1 Score=53.40 Aligned_cols=11 Identities=18% Similarity=0.595 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 002816 598 AEIADMRQKLE 608 (877)
Q Consensus 598 ~~l~~l~~~~~ 608 (877)
..+.+|+.++.
T Consensus 928 ~kl~eLq~rL~ 938 (1080)
T 2dfs_A 928 NKIMQLQRKID 938 (1080)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.50 E-value=1.6 Score=51.96 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002816 163 TKNIVS 168 (877)
Q Consensus 163 ~~~~l~ 168 (877)
.+....
T Consensus 404 ak~lY~ 409 (1080)
T 2dfs_A 404 AKHIYA 409 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 89
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.25 E-value=1.7 Score=34.87 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002816 783 KRLEEDLEMGRRKVL 797 (877)
Q Consensus 783 ~~~~~el~~l~~~l~ 797 (877)
...+.++..|.++|.
T Consensus 82 ~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 82 AKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 90
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.38 E-value=2.6 Score=33.93 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002816 781 AKKRLEEDLEMGRRKVL 797 (877)
Q Consensus 781 ~~~~~~~el~~l~~~l~ 797 (877)
.....+.++..|.++|.
T Consensus 80 ~~~~AE~evasLnRriq 96 (101)
T 3u59_A 80 KATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 91
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.36 E-value=1.3 Score=37.78 Aligned_cols=39 Identities=26% Similarity=0.137 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 656 ITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 694 (877)
Q Consensus 656 ~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 694 (877)
+..++..+..++.+....-..+..+..-+-.|+.+|..+
T Consensus 86 i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 92
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.23 E-value=2 Score=37.13 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHH
Q 002816 684 KHMMESEIQQANASLNFFDMKAARI 708 (877)
Q Consensus 684 ~~~l~~~~~~~~~~l~~~~~~~~~l 708 (877)
+..++..+.............+..+
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eL 106 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAEL 106 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 93
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.13 E-value=2.1 Score=36.30 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 656 ITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQA 694 (877)
Q Consensus 656 ~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 694 (877)
+..++..+..++.+....-..+..+..-+-.|+.+|..+
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 94
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.72 E-value=0.04 Score=42.07 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=35.2
Q ss_pred ccCccccccccccccccccccc-chhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 819 YREILKCSICLERPKEVVITKC-YHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~~~c-~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
+-..+.|..|-...+ -.+.| .|-+|..|+.-++.. ...||+|+.++..+
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 344578999965554 23345 677799999998884 44599999888543
No 95
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.05 E-value=3.7 Score=32.47 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002816 761 VYKSRLTLMELQIELVKE 778 (877)
Q Consensus 761 ~~~l~~~l~~~~~~l~~~ 778 (877)
+..+...+.+...++..+
T Consensus 62 yn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 96
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.73 E-value=0.15 Score=38.44 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=36.1
Q ss_pred cccccccccccc----ccc---cccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE----VVI---TKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~----~~~---~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
..|.||.+..-- -++ -.|+-..|..|..--.......||-|...+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 589999987532 122 3688899999998776667789999999996
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.55 E-value=2.2 Score=47.85 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002816 756 ESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQ 802 (877)
Q Consensus 756 ~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~ 802 (877)
.....+..++.+...++..++........+.++...++.++..+..+
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444445555555555555555433
No 98
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.42 E-value=0.059 Score=54.22 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=39.7
Q ss_pred ccCcccccccccccccccc-cccchhhhHHh---HHHHhccCCCCCCCCCCCCCCCCCc
Q 002816 819 YREILKCSICLERPKEVVI-TKCYHLFCNPC---VQKVTESRHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~-~~c~h~~c~~C---~~~~~~~~~~~Cp~c~~~~~~~~~~ 873 (877)
..=.|.||+-+..+..|+. ..|.|+-|++- +......+.-.||+|...+...++.
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 3445899999999999985 58999966643 2222233566899999998776643
No 99
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=90.65 E-value=0.11 Score=36.61 Aligned_cols=40 Identities=30% Similarity=0.673 Sum_probs=29.3
Q ss_pred cccccccccccccc---ccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 823 LKCSICLERPKEVV---ITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 823 l~C~~C~~~~~~~~---~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
..|..|...+.+.. -..|++.||.+|=.=.+. .-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD-SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT-TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHh-hccCCcCC
Confidence 35999999886544 337999999999543333 45579998
No 100
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=90.37 E-value=0.12 Score=51.84 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=39.5
Q ss_pred ccCcccccccccccccccc-cccchhhhHHh---HHHHhccCCCCCCCCCCCCCCCCCc
Q 002816 819 YREILKCSICLERPKEVVI-TKCYHLFCNPC---VQKVTESRHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 819 l~~~l~C~~C~~~~~~~~~-~~c~h~~c~~C---~~~~~~~~~~~Cp~c~~~~~~~~~~ 873 (877)
+.=.|.||+-+..+..|+. ..|.|+-|++- +......+.-.||+|+..+...++.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 3445899999999999885 58999966543 2222233466899999998876643
No 101
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=90.23 E-value=0.018 Score=47.83 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=29.3
Q ss_pred cccccccccccccc----ccccchhhhHHhHHHHhccCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVV----ITKCYHLFCNPCVQKVTESRHRKCPGCAA 865 (877)
Q Consensus 823 l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~ 865 (877)
..|..|...|+-.. ...||++||..|...... ..|.|-.|..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 58999999886432 237999999999876554 4677888843
No 102
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.15 E-value=6.1 Score=30.13 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002816 205 LQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALRAERDV 274 (877)
Q Consensus 205 l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~~~~~~ 274 (877)
+...+..++.+.+....+...+...+............++..++..+..++.+++.....+......+..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666677777777777777777777777666665554443
No 103
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.81 E-value=6.3 Score=33.66 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002816 601 ADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEI 635 (877)
Q Consensus 601 ~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~ 635 (877)
..|..++..+..++..+...+.....++..+..++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 104
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=88.78 E-value=0.11 Score=38.10 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=28.7
Q ss_pred cccccccccccccc------ccc-ccchhhh-HHhHHHHhccCCCCCCCCCCCCCCCCCc
Q 002816 822 ILKCSICLERPKEV------VIT-KCYHLFC-NPCVQKVTESRHRKCPGCAASFSPNDVK 873 (877)
Q Consensus 822 ~l~C~~C~~~~~~~------~~~-~c~h~~c-~~C~~~~~~~~~~~Cp~c~~~~~~~~~~ 873 (877)
.-.||+|+..+... ..+ .-.-+|- ..-.-..+..-..+||.|+..|-.+.+.
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp 67 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLP 67 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSC
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCC
Confidence 35899999987641 111 1122221 1111122233456899999999776654
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.85 E-value=7.1 Score=29.31 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002816 593 LAAAEAEIADMRQKLEAFKRDMV 615 (877)
Q Consensus 593 l~~~~~~l~~l~~~~~~~~~~~~ 615 (877)
+..+-..|..|+.+++.++..-.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 106
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=87.67 E-value=0.062 Score=53.41 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=32.8
Q ss_pred ccccccccccccccccc----ccc--hhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVIT----KCY--HLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~----~c~--h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.-.||+|+....-.++. .=| |.+|.-|-..|... ...||.|+..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 46999999977654443 245 56699999999874 4479999876
No 107
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=87.08 E-value=0.12 Score=55.64 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=0.0
Q ss_pred ccccccccccccc----cccccchhhhHHhHHHHhc------cCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEV----VITKCYHLFCNPCVQKVTE------SRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~----~~~~c~h~~c~~C~~~~~~------~~~~~Cp~c~~~~ 867 (877)
..|..|...|+-. ....||++||..|...... .+.|.|..|...+
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -------------------------------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 5799999888632 2347999999999976542 1356788886544
No 108
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=86.12 E-value=4.9 Score=28.32 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=51.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHhhHhHHHHHHHHHhhhc
Q 002816 44 QFQNQKLVQKLETQKVEYSALENKFAQLKERQQPYDSTLKVVNKSWEELITDLESCSMRA 103 (877)
Q Consensus 44 ~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 103 (877)
-.|+.+|...+...+.+|..|---+|.|.+++..|..--.+++....-+...+..+....
T Consensus 2 IkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 2 VQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 358899999999999999999999999999999999988888888877777777776555
No 109
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.81 E-value=11 Score=29.66 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002816 750 VRGSLEESQSKVYKSRLTLMEL 771 (877)
Q Consensus 750 l~~~l~~~~~~~~~l~~~l~~~ 771 (877)
+|...+.+..++..+...+..+
T Consensus 58 ~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 58 YQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 110
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=85.67 E-value=0.63 Score=40.64 Aligned_cols=43 Identities=21% Similarity=0.522 Sum_probs=28.0
Q ss_pred ccccccccccccc-----ccccccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-----VVITKCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 822 ~l~C~~C~~~~~~-----~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.-.|.+|..+|.- .+...|.|.+|..|-........-.|-+|+
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~ 115 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCH 115 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHH
Confidence 4799999998742 334579999999997321111234566664
No 111
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=85.18 E-value=1.8 Score=36.80 Aligned_cols=44 Identities=23% Similarity=0.527 Sum_probs=27.7
Q ss_pred Ccccccccccccc-----cccccccchhhhHHhHHHHhcc---CCCCCCCCC
Q 002816 821 EILKCSICLERPK-----EVVITKCYHLFCNPCVQKVTES---RHRKCPGCA 864 (877)
Q Consensus 821 ~~l~C~~C~~~~~-----~~~~~~c~h~~c~~C~~~~~~~---~~~~Cp~c~ 864 (877)
..-.|.+|...|. ..+...|.|.||..|-...... ..-.|-+|+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~ 105 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICL 105 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhH
Confidence 4579999999883 1234578888888886543211 123566664
No 112
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=82.96 E-value=0.63 Score=33.28 Aligned_cols=43 Identities=21% Similarity=0.435 Sum_probs=27.8
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|.+|+..|.....+. .|. ......+++.|+.|++.|...
T Consensus 3 Kpy~C~~C~k~F~~~~~L~-~H~------~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS-RHR------RAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCEESSHHHHH-HHH------HHHHTCCCEECTTTCCEESSH
T ss_pred CCccCCCCCCEeCCHHHHH-HHH------HHhCCCcCeECCCCCCCcCCH
Confidence 3578999999887653321 121 122233577899999999753
No 113
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.63 E-value=13 Score=27.82 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhh
Q 002816 788 DLEMGRRKVLRLQAQ 802 (877)
Q Consensus 788 el~~l~~~l~~l~~~ 802 (877)
++..++..|.+|+..
T Consensus 63 eL~elRqgLakL~~~ 77 (79)
T 3cvf_A 63 ELSELREGLARLAEA 77 (79)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccc
Confidence 344455555555443
No 114
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=82.33 E-value=1 Score=31.20 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=25.6
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+. .|+- ......+++.|+.|++.|..+
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~-----~~H~~~k~~~C~~C~k~F~~~ 54 (54)
T 2eps_A 12 PYICQSCGKGFSRPDHLN-GHIK-----QVHTSERPHKCQVWVSGPSSG 54 (54)
T ss_dssp CEECSSSCCEESSHHHHH-HHHH-----HTSCCCCCCCSSSSCCSSCCC
T ss_pred CeECCCCCcccCCHHHHH-HHHH-----HhcCCCCCccCCCCCCCCCCC
Confidence 478999988886542221 1210 011123467899999999753
No 115
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.25 E-value=52 Score=34.40 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhhc
Q 002816 788 DLEMGRRKVLRLQAQTE 804 (877)
Q Consensus 788 el~~l~~~l~~l~~~~~ 804 (877)
.+..++++|..+.+.+.
T Consensus 177 sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhccc
Confidence 34445555666555544
No 116
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=81.79 E-value=0.13 Score=37.21 Aligned_cols=40 Identities=13% Similarity=0.339 Sum_probs=24.7
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
.+.|++|...|.....+. ..+....++.||.|+..|...+
T Consensus 14 ~~~C~~C~k~F~~~~~l~----------~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQ----------LFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp EEECSSSCCEEEHHHHHH----------HEETTTTEEBCSSSCCBCEECT
T ss_pred CccCCCCCchhccHHHhH----------hhcCCCCCEECCCCCCccccCc
Confidence 468998888886542221 1111124568999999996543
No 117
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=81.75 E-value=0.64 Score=39.24 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=37.6
Q ss_pred ccccccccccc---cccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPK---EVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 823 l~C~~C~~~~~---~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
+.|..|...+. ......=|..||..|....+.+ ...|..|..++...++
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 68999998886 3455577899999999887662 2269999999986554
No 118
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=81.51 E-value=0.4 Score=35.95 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=22.3
Q ss_pred cccccccccccccc----ccccchhhhHHhHHH
Q 002816 823 LKCSICLERPKEVV----ITKCYHLFCNPCVQK 851 (877)
Q Consensus 823 l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~ 851 (877)
..|.+|...|+-.. --.||++||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 48999999886422 236999999999864
No 119
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.92 E-value=0.45 Score=36.68 Aligned_cols=45 Identities=24% Similarity=0.563 Sum_probs=29.8
Q ss_pred ccccccccccccccc----ccccchhhhHHhHHHHhc-----cCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVV----ITKCYHLFCNPCVQKVTE-----SRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~-----~~~~~Cp~c~~~ 866 (877)
...|.+|...|.-.. --.||++||..|...... .+.+.|..|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~ 72 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTL 72 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHH
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHH
Confidence 357999999886322 236999999999875431 123456666443
No 120
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.79 E-value=21 Score=28.38 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 002816 784 RLEEDLEMGRRKVL 797 (877)
Q Consensus 784 ~~~~el~~l~~~l~ 797 (877)
++..+...|...+.
T Consensus 87 kl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 87 KLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 33333333333333
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=79.74 E-value=0.53 Score=36.47 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=30.3
Q ss_pred ccccccccccccccc----ccccchhhhHHhHHHHhc-------cCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVV----ITKCYHLFCNPCVQKVTE-------SRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~-------~~~~~Cp~c~~~ 866 (877)
...|.+|...|.-.. --.||++||..|...... ...|.|..|-..
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~ 76 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLA 76 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHH
Confidence 358999999886432 236999999999865421 124567776443
No 122
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=78.89 E-value=0.44 Score=37.22 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=29.2
Q ss_pred cccccccccccccc----ccccchhhhHHhHHHHhc------cCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVV----ITKCYHLFCNPCVQKVTE------SRHRKCPGCAA 865 (877)
Q Consensus 823 l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~------~~~~~Cp~c~~ 865 (877)
..|.+|...|.-.. --.||++||..|...... ...|.|-.|-.
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~ 62 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHT 62 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHH
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHH
Confidence 57999999886432 237999999999865321 12456777643
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=78.85 E-value=0.53 Score=36.98 Aligned_cols=42 Identities=21% Similarity=0.515 Sum_probs=28.4
Q ss_pred cccccccccccccc----ccccchhhhHHhHHHHhc-----cCCCCCCCCC
Q 002816 823 LKCSICLERPKEVV----ITKCYHLFCNPCVQKVTE-----SRHRKCPGCA 864 (877)
Q Consensus 823 l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~-----~~~~~Cp~c~ 864 (877)
..|.+|...|.-.. -..||++||..|...... ...+.|..|-
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~ 71 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCY 71 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHH
Confidence 57999999886322 237999999999876432 1234566553
No 124
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=78.76 E-value=0.67 Score=41.54 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=8.1
Q ss_pred CCCCCCCCCCC
Q 002816 857 HRKCPGCAASF 867 (877)
Q Consensus 857 ~~~Cp~c~~~~ 867 (877)
+..||+|+.+-
T Consensus 153 p~~CP~Cg~~~ 163 (170)
T 3pwf_A 153 PEYCPVCGAPK 163 (170)
T ss_dssp CSBCTTTCCBG
T ss_pred CCCCCCCCCCH
Confidence 44799998653
No 125
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=78.71 E-value=0.97 Score=38.40 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=36.5
Q ss_pred ccccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.|..|...+.. +....=|..||..|...... ..|+.|+.++...+
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDPEV 77 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCTTS
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCcCc
Confidence 3789999988875 34457799999999987644 57999999998643
No 126
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=78.05 E-value=1.3 Score=30.90 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=26.6
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+. .|. ......++..||.|+..|...
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IHL------RTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HHH------HHHHCCCCEECSSSSCEESSH
T ss_pred CccCCCCcchhCChHHHH-HHH------HHcCCCCCcCCCCCcchhCCH
Confidence 478999999887653331 222 112233567899999998653
No 127
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.23 E-value=0.63 Score=36.03 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=22.7
Q ss_pred cccccccccccccc----ccccchhhhHHhHHHH
Q 002816 823 LKCSICLERPKEVV----ITKCYHLFCNPCVQKV 852 (877)
Q Consensus 823 l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~ 852 (877)
..|.+|...|.-.. --.||++||..|....
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 57999999885322 2369999999997643
No 128
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.90 E-value=23 Score=27.23 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002816 722 LAEDRSQNSANLENTQKRLSDVRKSS 747 (877)
Q Consensus 722 l~~el~~~~~~~~~~~~~~~~l~~~~ 747 (877)
++.++..+.+.++.+.-...+++.++
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kv 72 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKV 72 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33334444444433333333333333
No 129
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.45 E-value=22 Score=26.67 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002816 202 SSNLQSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAALR 269 (877)
Q Consensus 202 ~~~l~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~~ 269 (877)
+..+...++.+......++.++..++..++........+..++..+...+.-...++..++..++.+-
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 44445556666666666777777777777777777777777777777777777777777777666553
No 130
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=75.76 E-value=1.4 Score=40.28 Aligned_cols=46 Identities=26% Similarity=0.510 Sum_probs=30.7
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
+.|..|...+.......=|..||..|....+. ..|..|+.++...+
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPTQ 133 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTTS---CCCTTTCCCCCSSC
T ss_pred CccCCCCCccCCCceeECCEeeecCccccccc---cccccCCCccCCCc
Confidence 56666666665443345577788888766543 46999988886543
No 131
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.53 E-value=0.17 Score=39.00 Aligned_cols=39 Identities=23% Similarity=0.560 Sum_probs=27.3
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
..||+|...+... =|+.+|..|-..... ...||.|+.++
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~--~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEFIEM--KALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCEEEE--EEECTTTCSBC
T ss_pred ccCccCCCcceec----CCEEECccccchhhc--cccCcchhhHH
Confidence 7999999887643 244458888765433 45699998776
No 132
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=75.50 E-value=24 Score=26.80 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 002816 785 LEEDLEMG 792 (877)
Q Consensus 785 ~~~el~~l 792 (877)
++.++.++
T Consensus 95 ~ene~ar~ 102 (114)
T 2xzr_A 95 IENEIARI 102 (114)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 133
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=75.43 E-value=0.77 Score=42.29 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=17.2
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.+.|++|+..+... ..+..||+|+.+
T Consensus 155 ~~~C~~CG~~~~g~-------------------~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT-------------------GAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE-------------------ECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCC-------------------CCCCCCCCCcCC
Confidence 47888887665421 123479999886
No 134
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=74.69 E-value=1.8 Score=39.02 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=35.5
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.|..|...+.......=|..||..|....+. ..|..|+.++...+
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPTQ 79 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTTS
T ss_pred cCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCCc
Confidence 468888988887655556788999999887655 46888888886543
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.67 E-value=0.66 Score=44.03 Aligned_cols=41 Identities=27% Similarity=0.603 Sum_probs=28.2
Q ss_pred cccccccccccccc----ccccchhhhHHhHHHHhc-------cCCCCCCCC
Q 002816 823 LKCSICLERPKEVV----ITKCYHLFCNPCVQKVTE-------SRHRKCPGC 863 (877)
Q Consensus 823 l~C~~C~~~~~~~~----~~~c~h~~c~~C~~~~~~-------~~~~~Cp~c 863 (877)
..|++|...|+-.. .-.||++||..|...... .+.|.|..|
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C 213 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGC 213 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHH
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHH
Confidence 58999999886321 237999999999875432 123566666
No 136
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=74.61 E-value=1.3 Score=29.39 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=20.1
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhcc-CCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTES-RHRKCPGCAAS 866 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~-~~~~Cp~c~~~ 866 (877)
..+.|.+|+-.|....--+ +.+-.. ....||.|+.+
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~----------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDN----------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTT----------CCGGGSCTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCC----------cchhhCCCCCcCcCCCCc
Confidence 3478999988776322111 111111 12479999865
No 137
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=74.49 E-value=0.84 Score=35.47 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=24.9
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..|++|...|.....+. .|. ......+++.|+.|++.|...
T Consensus 29 h~C~~Cgk~F~~~~~L~-~H~------~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQE-RHL------RLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp EECTTSCCEESSHHHHH-HHH------HTTSCSSSEECTTSSCEESSH
T ss_pred EECCCCCCCcCcHHHHh-hhh------hhccCCCccCCCCCCCEeCCH
Confidence 57888888887543221 121 111122467899999999754
No 138
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=73.91 E-value=1.2 Score=35.43 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=19.8
Q ss_pred ccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 833 KEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 833 ~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
..+....||+.|+ + .+. .+..||.|++....
T Consensus 66 ~p~~C~~CG~~F~----~-~~~-kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 66 KPAQCRKCGFVFK----A-EIN-IPSRCPKCKSEWIE 96 (105)
T ss_dssp CCCBBTTTCCBCC----C-CSS-CCSSCSSSCCCCBC
T ss_pred ECcChhhCcCeec----c-cCC-CCCCCcCCCCCccC
Confidence 3455668999992 1 112 34579999887644
No 139
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.13 E-value=45 Score=28.77 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 002816 784 RLEEDLEMGRRKVLRLQAQ 802 (877)
Q Consensus 784 ~~~~el~~l~~~l~~l~~~ 802 (877)
....-+..+...+..|+.+
T Consensus 126 e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 140
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=72.37 E-value=1.7 Score=30.25 Aligned_cols=41 Identities=29% Similarity=0.510 Sum_probs=25.3
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
+.|++|...|.....+. .|. .......+..||.|+..|...
T Consensus 2 ~~C~~C~~~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK-KHI------RTHTDVRPYHCTYCNFSFKTK 42 (57)
T ss_dssp CBCTTTCCBCSSHHHHH-HHH------HHTSSCCCEECSSSSCEESSH
T ss_pred CcCCCCcCcCCCHHHHH-HHH------HhcCCCCCccCCCCCchhcCH
Confidence 57999998887653321 221 111122456899999999653
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.28 E-value=0.88 Score=43.23 Aligned_cols=45 Identities=22% Similarity=0.546 Sum_probs=30.9
Q ss_pred ccccccccccccc----cccccchhhhHHhHHHHhc-------cCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEV----VITKCYHLFCNPCVQKVTE-------SRHRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~----~~~~c~h~~c~~C~~~~~~-------~~~~~Cp~c~~~~ 867 (877)
-.|.+|...|+-. ....||++||..|...... .+.|.|..|...+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 4899999888632 2347999999999875422 1346787775433
No 142
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.70 E-value=41 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002816 358 SVKNQLEKSKSEVFKYQALFEKLQVEKDNLAWRETEL 394 (877)
Q Consensus 358 ~l~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 394 (877)
.+...+..+..++...+........+.+.+...+..+
T Consensus 44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444444444444433
No 143
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.40 E-value=1 Score=33.46 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=22.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+.- .....||.|+..|...
T Consensus 18 ~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSCC
T ss_pred CeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcCH
Confidence 4789999998876544322 2345667676666543
No 144
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=70.81 E-value=1.3 Score=35.73 Aligned_cols=47 Identities=26% Similarity=0.675 Sum_probs=34.5
Q ss_pred cccccccccccccc-cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.|..|...+... ....=|..||..|....+ ...|..|+.++...+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVAGD 80 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCSSS
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccccCC
Confidence 36888888887653 344678899999986543 357999999997543
No 145
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=70.58 E-value=0.54 Score=34.36 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=24.8
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
+|-..+.||+|...+.-.. .+| .-.||.|+..|.-.|-.++
T Consensus 4 ~LL~iL~CP~ck~~L~~~~--~~~---------------~LiC~~cg~~YPI~dGIPv 44 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYHQ--DKQ---------------ELWSRQAKLAYPIKDGIPY 44 (68)
T ss_dssp SSSCCCBCSSSCCBCEEET--TTT---------------EEEETTTTEEEEEETTEEC
T ss_pred HHhhheECCCCCCcCeEeC--CCC---------------EEEcCCCCcEecCCCCeee
Confidence 4567799999997654221 122 2247777777766554444
No 146
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=69.99 E-value=1.8 Score=30.59 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=25.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+. .|.- ......++.||.|+..|...
T Consensus 2 ~~~C~~C~~~f~~~~~l~-~H~~------~h~~~~~~~C~~C~~~f~~~ 43 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLK-RHYR------SHTNEKPYPCGLCNRAFTRR 43 (60)
T ss_dssp CBCCTTTCCCBSCHHHHH-HHHH------TTTSSCSEECTTTCCEESSH
T ss_pred cCcCCCCccccCCHHHHH-HHHH------HhCCCCCccCCCCCCccCCH
Confidence 368999998887643221 1210 11122456899999999753
No 147
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.97 E-value=2.1 Score=31.74 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=26.9
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|++|...|.....+. .|+ .......++.||.|+..|...
T Consensus 13 k~~~C~~C~k~f~~~~~L~-~H~------~~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILV-QHQ------RVHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp CCEECSSSCCEESSHHHHH-HHH------HGGGCSCCEECSSSCCEESSH
T ss_pred CCccCCCCCCccCCHHHHH-HHH------HhcCCCCCeECCCCCcccCCH
Confidence 3578999998887643321 222 111223467899999998653
No 148
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=69.81 E-value=0.32 Score=37.97 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=20.6
Q ss_pred ccccccccccc-----cccc-ccchhhhHHhHHHH
Q 002816 824 KCSICLERPKE-----VVIT-KCYHLFCNPCVQKV 852 (877)
Q Consensus 824 ~C~~C~~~~~~-----~~~~-~c~h~~c~~C~~~~ 852 (877)
.||-|...+.. ++.- .|||.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 49988765421 2333 49999999998877
No 149
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=69.42 E-value=2.6 Score=36.06 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=31.2
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhc----------cCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTE----------SRHRKCPGCAA 865 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~----------~~~~~Cp~c~~ 865 (877)
...|.+|...-.-..--.|-.+||..|+...+. ...-.||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 357999977543333348999999999996553 23568999964
No 150
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=69.37 E-value=2.5 Score=31.48 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=27.0
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|++|...|.....+. .|. ......+.+.|+.|+..|...
T Consensus 16 ~~~~C~~C~k~f~~~~~l~-~H~------~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLA-SHK------TVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHH-HHH------HHHCCCCSEECTTTCCEESCH
T ss_pred CCeECCCCCceeCCHHHHH-HHH------HHcCCCCCEECCCCCchhCCH
Confidence 4589999999887643321 222 111223456899999999653
No 151
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=68.74 E-value=0.46 Score=30.87 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=15.3
Q ss_pred cccchhhhHHhHHHHhccCCCCCCCCCCCC
Q 002816 838 TKCYHLFCNPCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 838 ~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
+.||+.|-.+=+.. -+...||+|+..+
T Consensus 7 ~rCg~~fs~~el~~---lP~IrCpyCGyri 33 (48)
T 4ayb_P 7 GKCWKTFTDEQLKV---LPGVRCPYCGYKI 33 (48)
T ss_dssp CCTTTTCCCCCSCC---CSSSCCTTTCCSC
T ss_pred eccCCCccHHHHhh---CCCcccCccCcEE
Confidence 45666665432221 1345799998654
No 152
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=68.56 E-value=1.3 Score=32.17 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=25.8
Q ss_pred cccccccccccccccccccchhhhHHhHHH-H-hccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQK-V-TESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~-~-~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+. .|. .. . ....++.||.|+..|...
T Consensus 10 ~~~C~~C~k~f~~~~~l~-~H~------~~~H~~~~~~~~C~~C~k~f~~~ 53 (66)
T 2drp_A 10 TYRCKVCSRVYTHISNFC-RHY------VTSHKRNVKVYPCPFCFKEFTRK 53 (66)
T ss_dssp EEECTTTCCEESSHHHHH-HHH------HHHSSSSCCCEECTTTCCEESCH
T ss_pred ceECCCCcchhCCHHHHH-HHH------HHHcCCCCcCeECCCCCCccCCH
Confidence 478999998887643221 121 11 1 122467899999999753
No 153
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=67.95 E-value=4.8 Score=31.99 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=27.0
Q ss_pred Cccccccccccc-ccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERP-KEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~-~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|++|...| .....+. .|. ... ..+.+.|+.|++.|...
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~-~H~------~~h-~~k~~~C~~Cgk~F~~~ 75 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLK-KHM------ENC-KQEMFTCHHCGKQLRSL 75 (96)
T ss_dssp SCEECTTTCSCEESSHHHHH-HHH------HHH-CCCCCCCSSSCCCCSSH
T ss_pred CCcCCCCCCCCcccCHHHHH-HHH------HHH-CCCCeECCCCCCeeCCH
Confidence 457999999988 6543221 122 112 33577899999999753
No 154
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=67.90 E-value=0.7 Score=33.60 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=24.6
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
+|-..+.||+|...+.-... ...-.||.|+..|.-.|=.++
T Consensus 6 ~LLeiL~CP~ck~~L~~~~~-----------------~g~LvC~~c~~~YPI~dGIPv 46 (67)
T 2jny_A 6 QLLEVLACPKDKGPLRYLES-----------------EQLLVNERLNLAYRIDDGIPV 46 (67)
T ss_dssp GGTCCCBCTTTCCBCEEETT-----------------TTEEEETTTTEEEEEETTEEC
T ss_pred HHHHHhCCCCCCCcCeEeCC-----------------CCEEEcCCCCccccCCCCEee
Confidence 46677999999986542210 112347777777765554443
No 155
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.69 E-value=0.4 Score=36.10 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCc
Q 002816 858 RKCPGCAASFSPNDVK 873 (877)
Q Consensus 858 ~~Cp~c~~~~~~~~~~ 873 (877)
++|+.|+..++.+.|.
T Consensus 52 yFC~~C~~LiSkkrv~ 67 (81)
T 2jrp_A 52 YFCQNGHGLISKKRVN 67 (81)
T ss_dssp ECCTTTTCCCCTTSSE
T ss_pred eeeccCCCEeecceEE
Confidence 4566666666555543
No 156
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=67.29 E-value=2.4 Score=36.16 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=36.4
Q ss_pred ccccccccccccc---ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE---VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~---~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.|..|...+.. +....=|..||..|....+.+ ...|+.|+.++...+
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRAYE 80 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECTTS
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCccc
Confidence 4789999988852 445577999999999887652 126999999887543
No 157
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=67.12 E-value=0.68 Score=34.07 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=25.0
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
+|-..+.||+|...+.-... ...-.||.|+..|.-.|-.++
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~-----------------~~~LiC~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQRA-----------------QAELVCNADRLAFPVRDGVPI 44 (70)
T ss_dssp CCCCCCBCTTTCCBEEEETT-----------------TTEEEETTTTEEEEEETTEEC
T ss_pred HHhhheECCCCCCcCEEeCC-----------------CCEEEcCCCCceecCCCCeee
Confidence 45677999999986642210 122347777777766554444
No 158
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.45 E-value=36 Score=24.97 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002816 206 QSEVKNLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNCKLAAL 268 (877)
Q Consensus 206 ~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~~~~~~ 268 (877)
...++.+......++.++..++..+.........+..++..+...+.....++..++..++.+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344555555556666666666666666666666666777777776666666666666666554
No 159
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=66.35 E-value=0.56 Score=34.27 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=25.9
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+|-..+.||+|...+.-... ...-.||.|+..|.-.|-.++.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~-----------------~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVFDKS-----------------KDELICKGDRLAFPIKDGIPMM 45 (68)
T ss_dssp CCEEECBCTTTCCBCEEETT-----------------TTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCcCeEeCC-----------------CCEEEcCCCCcEecCCCCeeee
Confidence 45567899999976542210 1223588888888766655443
No 160
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.01 E-value=63 Score=27.61 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQT 647 (877)
Q Consensus 599 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~~ 647 (877)
.|..|+.++..+...+..+...+......+..+..++..+...+..++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443333333
No 161
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=65.91 E-value=1.8 Score=39.75 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=35.8
Q ss_pred ccccccccccccc---ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE---VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~---~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
-+.|..|...+.. +....=|..||..|....+.. ...|+.|+.++...+
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPASE 83 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECTTS
T ss_pred CcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCccccCc
Confidence 4788889888764 455567899999999877652 115999998886543
No 162
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=65.77 E-value=43 Score=25.70 Aligned_cols=37 Identities=14% Similarity=0.016 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 660 DDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANA 696 (877)
Q Consensus 660 ~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~ 696 (877)
+..+..++.+....-..+..+..-+-.++.+|..+..
T Consensus 41 E~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 41 EREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333344443334444444444445555544433
No 163
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=65.60 E-value=3.3 Score=38.33 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=17.0
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.+.|++|+..+.. . .+..||+|+.+
T Consensus 171 ~~~C~~CG~i~~g--~------------------~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG--E------------------DFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES--S------------------CCSBCTTTCCB
T ss_pred EEEECCCCCEEcC--c------------------CCCCCCCCCCC
Confidence 5788888776641 0 23479999876
No 164
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.49 E-value=0.95 Score=32.20 Aligned_cols=33 Identities=18% Similarity=0.485 Sum_probs=22.1
Q ss_pred ccccccccccccc-----ccccc---cchhhhHHhHHHHhc
Q 002816 822 ILKCSICLERPKE-----VVITK---CYHLFCNPCVQKVTE 854 (877)
Q Consensus 822 ~l~C~~C~~~~~~-----~~~~~---c~h~~c~~C~~~~~~ 854 (877)
.-.||-|...+-. .++-+ |||.||..|...|..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 3579999876632 22323 888888888877654
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.28 E-value=3.5 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=16.4
Q ss_pred ccccccccccccc-cccccchhhhHHhHHHHhc
Q 002816 823 LKCSICLERPKEV-VITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 823 l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~ 854 (877)
+.|..|...+... ....=|..||..|....+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4555555555332 2334455666666655544
No 166
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=65.28 E-value=53 Score=26.52 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=1.4
Q ss_pred HHHHHHHHhh
Q 002816 792 GRRKVLRLQA 801 (877)
Q Consensus 792 l~~~l~~l~~ 801 (877)
+..++..|..
T Consensus 89 V~~eL~rLQ~ 98 (112)
T 1x79_B 89 VSEELVRLQK 98 (112)
T ss_dssp HHTC------
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 167
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=64.71 E-value=2.9 Score=32.96 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
..+.||.|+..|...
T Consensus 64 ~~~~C~~C~~~f~~~ 78 (95)
T 2yt9_A 64 KPYICQSCGKGFSRP 78 (95)
T ss_dssp SSBCCSSSCCCBSSH
T ss_pred CceECCCccchhCCH
Confidence 456899999998653
No 168
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=68.36 E-value=1.4 Score=24.41 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSPND 871 (877)
Q Consensus 858 ~~Cp~c~~~~~~~~ 871 (877)
+.||.|+..|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 3 YVCERCGKRFVQSS 16 (26)
Confidence 46888888776543
No 169
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=64.01 E-value=52 Score=25.93 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 743 VRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRR 794 (877)
Q Consensus 743 l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~ 794 (877)
+.-++.-|+..+..++..+..+.....+...+++.+......+..++..++.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433333444444333333
No 170
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.70 E-value=4.5 Score=32.18 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=27.0
Q ss_pred Ccccccccccccc-cccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPK-EVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~-~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|++|...|. ....+. .|+- .+.. ..+.+.|+.|++.|...
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-~H~~--~h~~---~~~~~~C~~C~k~F~~~ 67 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-KHME--VCQK---LQDALKCQHCRKQFKSK 67 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-HHHH--HHHH---HHHHHSCSSSCCCCSCH
T ss_pred CCcCCCCCCCChhhhHHHHH-HHHH--HHcC---CCCCEECCCCCCccCCH
Confidence 4589999999997 654332 3431 1111 01245799999999753
No 171
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=63.40 E-value=53 Score=25.87 Aligned_cols=12 Identities=8% Similarity=0.166 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q 002816 660 DDYNIKLVLEGV 671 (877)
Q Consensus 660 ~~~~~~l~~~~~ 671 (877)
++.+.+.+...+
T Consensus 8 EEKyrKAMVsnA 19 (103)
T 4h22_A 8 EEKYKKAMVSNA 19 (103)
T ss_dssp CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333443333
No 172
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=63.36 E-value=0.89 Score=33.33 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=24.9
Q ss_pred hccCcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCCccc
Q 002816 818 EYREILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~ 875 (877)
+|-..+.||+|...+.-... ...-.||.|+..|.-.|-.++
T Consensus 4 ~LLeiL~CP~ck~~L~~~~~-----------------~~~LiC~~cg~~YPI~dGIPv 44 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSAD-----------------KTELISKGAGLAYPIRDGIPV 44 (69)
T ss_dssp CGGGTCCCTTTCCCCEECTT-----------------SSEEEETTTTEEEEEETTEEC
T ss_pred HHHhheeCCCCCCcCeEeCC-----------------CCEEEcCCCCcEecCcCCeee
Confidence 45667999999976542110 122357888777766554444
No 173
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=62.77 E-value=5.9 Score=25.60 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=21.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.+.|++|...|.....+. .|. ......+.+.||.|+
T Consensus 10 ~~~C~~C~k~f~~~~~l~-~H~------~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRMS-YHV------RSHDGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEECSCHHHHH-HHH------HHHSCCCCCCCCCCC
T ss_pred CCcCCCCCcccCCHHHHH-HHH------HHccCCCCCCCcCCC
Confidence 478999988886542221 222 122233567899995
No 174
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=61.57 E-value=4.7 Score=22.51 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSPND 871 (877)
Q Consensus 857 ~~~Cp~c~~~~~~~~ 871 (877)
++.||.|+..|....
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCCSSCCCCCCTTT
T ss_pred CCcCCCCCcccCCHH
Confidence 457999999987543
No 175
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.25 E-value=2.8 Score=30.70 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=25.6
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+. .|.. .....+.+.||.|+..|...
T Consensus 9 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 9 PEKCSECSYSCSSKAALR-IHER------IHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp SEECSSSSCEESSHHHHH-HHHG------GGCCSCSEECSSSSCEESSH
T ss_pred CeECCCCCcccCCHHHHH-HHHH------HcCCCCCEeCCCCCCccCCH
Confidence 478999998887643321 1211 11122456899999998653
No 176
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=60.73 E-value=2.2 Score=32.05 Aligned_cols=43 Identities=30% Similarity=0.541 Sum_probs=25.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhc-cCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTE-SRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~-~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+. .|+. ..... ...+.||.|+..|...
T Consensus 15 ~~~C~~C~k~f~~~~~L~-~H~~-----~~h~~~~~~~~C~~C~~~f~~~ 58 (77)
T 2ct1_A 15 PYECYICHARFTQSGTMK-MHIL-----QKHTENVAKFHCPHCDTVIARK 58 (77)
T ss_dssp SEECTTTCCEESCHHHHH-HHHH-----HHSSSSCSSEECSSSSCEESSH
T ss_pred CeECCCcCchhCCHHHHH-HHHH-----HhcCCCCCccCCCCCCCccCCH
Confidence 478999998887543221 1210 00111 1356899999998653
No 177
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.69 E-value=4.1 Score=30.57 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=26.9
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|.+|...|.....+. .|.-.. ........+.|+.|+..|...
T Consensus 6 k~~~C~~C~k~f~~~~~L~-~H~~~h---~~~~~~~~~~C~~C~k~f~~~ 51 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLN-WHQRKH---AETVAALRFPCEFCGKRFEKP 51 (78)
T ss_dssp CCEECSSSCCEESSHHHHH-HHHHHH---HHHTTTCCEECTTTCCEESSH
T ss_pred cCeECCCCCCeeCCHHHHH-HHHHHh---hccCCCcccCCCCCCchhCCH
Confidence 3578999999887653332 232100 000013467899999998653
No 178
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=60.43 E-value=4.3 Score=31.44 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=24.6
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
.+.|++|...|.....+. .|. .......++.||.|+..|..
T Consensus 3 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLT-THI------RTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESCHHHHH-HHH------HHHHCCCCEECTTTCCEESS
T ss_pred CCcCCCCCCccCCHHHHH-HHH------HHcCCCCCccCCCCCCccCC
Confidence 478999988887643321 121 11222345678888888864
No 179
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.21 E-value=69 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 768 LMELQIELVKERFAKKRLEEDLEMGRRKVLRL 799 (877)
Q Consensus 768 l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l 799 (877)
+..+...+..+......+...+..++..+..+
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555444443
No 180
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=59.72 E-value=49 Score=24.26 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 002816 792 GRRKVLRL 799 (877)
Q Consensus 792 l~~~l~~l 799 (877)
++..|..|
T Consensus 61 lrq~LakL 68 (72)
T 3cve_A 61 LRDNLAKL 68 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 181
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=59.43 E-value=62 Score=25.37 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 002816 686 MMESEIQ 692 (877)
Q Consensus 686 ~l~~~~~ 692 (877)
.++.+|.
T Consensus 76 ~Le~EIa 82 (95)
T 3mov_A 76 ALDMEIS 82 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 182
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=59.32 E-value=4.5 Score=30.37 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=32.2
Q ss_pred Cccccccccccccc-ccccccchhhhH-HhHHHHhccCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKE-VVITKCYHLFCN-PCVQKVTESRHRKCPGCAASF 867 (877)
Q Consensus 821 ~~l~C~~C~~~~~~-~~~~~c~h~~c~-~C~~~~~~~~~~~Cp~c~~~~ 867 (877)
.-+.|..|...+.. +....=|..||. .|....+. ..|..|+...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 34789999988875 344567899999 69977654 4699997554
No 183
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.98 E-value=39 Score=25.34 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002816 757 SQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQA 801 (877)
Q Consensus 757 ~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~ 801 (877)
++..+.-....+.++...+......+.+++..+..+..++..+.+
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333333333333344445555555555555555443
No 184
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=57.65 E-value=2.8 Score=29.76 Aligned_cols=32 Identities=25% Similarity=0.664 Sum_probs=25.3
Q ss_pred ccccccccccccccccccc-chhhhHHhHHHHhc
Q 002816 822 ILKCSICLERPKEVVITKC-YHLFCNPCVQKVTE 854 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c-~h~~c~~C~~~~~~ 854 (877)
...|.||.+.-+ ...+.| |-+||..|....+.
T Consensus 8 ~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 8 LPWCCICNEDAT-LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CSSCTTTCSCCC-EEETTTTSEEECSSHHHHHTT
T ss_pred CCeeEEeCCCCe-EEecCCCCceehHHHHHHHcc
Confidence 468999998733 445678 99999999998874
No 185
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.15 E-value=5.5 Score=33.37 Aligned_cols=43 Identities=23% Similarity=0.571 Sum_probs=29.7
Q ss_pred ccccccccccccccccccchhhhHHhHHHHh----------ccCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVT----------ESRHRKCPGCAA 865 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~----------~~~~~~Cp~c~~ 865 (877)
..|.+|.+.-.-..-=.|-..||..|+...+ ....-.|+.|..
T Consensus 58 ~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4699997654322333799999999999752 123568999954
No 186
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=56.86 E-value=2.6 Score=37.73 Aligned_cols=11 Identities=27% Similarity=0.906 Sum_probs=8.6
Q ss_pred CCCCCCCCCCC
Q 002816 858 RKCPGCAASFS 868 (877)
Q Consensus 858 ~~Cp~c~~~~~ 868 (877)
..||.|+.++.
T Consensus 149 ~~Cp~CG~~~~ 159 (165)
T 2lcq_A 149 GVCPDCGSKVK 159 (165)
T ss_dssp GBCTTTCCBEE
T ss_pred CcCCCCCCcce
Confidence 36999998864
No 187
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=56.81 E-value=5.8 Score=29.18 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=25.3
Q ss_pred ccccc--ccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCS--ICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~--~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|+ .|...|.....+. .|. ......+.+.||.|+..|...
T Consensus 19 ~~~C~~~~C~k~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 62 (73)
T 1f2i_G 19 PYACPVESCDRRFSRSDELT-RHI------RIHTGQKPFQCRICMRNFSRS 62 (73)
T ss_dssp CEECSSTTBCCEESSHHHHH-HHH------HHHHCCCCEECTTTCCEESCH
T ss_pred ccCCcCCCCCCccCCHHHHH-HHH------HhhCCCCCeECCCCCchhCCH
Confidence 47887 4888876543221 222 112233467899999999753
No 188
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=56.63 E-value=0.99 Score=34.50 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=25.1
Q ss_pred cccccc--ccccccc-----cccc------ccchhhhHHhHHHHhccCCCCCCC
Q 002816 822 ILKCSI--CLERPKE-----VVIT------KCYHLFCNPCVQKVTESRHRKCPG 862 (877)
Q Consensus 822 ~l~C~~--C~~~~~~-----~~~~------~c~h~~c~~C~~~~~~~~~~~Cp~ 862 (877)
...||. |...+.. .+.= .|||.||..|...|+. ..|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~---~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE---GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS---SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC---Ccccc
Confidence 457877 8664421 2333 6999999999988755 34654
No 189
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=56.59 E-value=5.7 Score=33.51 Aligned_cols=41 Identities=27% Similarity=0.552 Sum_probs=26.0
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|++|...|.....+. .|.- .. .+++.||.|+..|...
T Consensus 73 ~~~~C~~C~k~f~~~~~l~-~H~~-------~H-~~~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLK-QHIR-------YT-EHTKVCPVCKKEFTST 113 (129)
T ss_dssp CSEECTTTCCEESSHHHHH-HHHH-------HT-CCCCBCTTTCCBCSSH
T ss_pred CCeECCCCCcccCCHhHHH-HHHH-------HC-CCCCCCCCCCcccCCH
Confidence 3478999988887543221 1211 01 3567899999999753
No 190
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=56.09 E-value=3.9 Score=30.63 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=25.6
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+.|++|...|.....+. .|.- ......++.||.|+..|...
T Consensus 17 ~~~~C~~C~~~f~~~~~l~-~H~~------~h~~~~~~~C~~C~~~f~~~ 59 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLS-KHRR------THTGEKPYKCDECGKAFIQR 59 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHH-HHHT------TTCCSCSEECSSSCCEESSH
T ss_pred CCEECCCCCcccCCHHHHH-HHHH------HcCCCcCeeCCCCCCccCCH
Confidence 3578999998887543221 1211 01112356899999998653
No 191
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=55.97 E-value=5.1 Score=30.41 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=29.4
Q ss_pred ccccccccccccc--ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE--VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPNDV 872 (877)
Q Consensus 822 ~l~C~~C~~~~~~--~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~~ 872 (877)
..+|..|.....- +..-.||++||..- ++. ....||+--+..+...|
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~H---Ry~-e~H~C~fDyK~~gr~~i 73 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASH---RYA-EAHGCNYDYKSAGRRYL 73 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTT---CST-GGGTCCSCCSSSCCCCC
T ss_pred CccchhhCCeecccCCeEcCCCCEecccC---CCc-cCCCCcchhhHHHHHHH
Confidence 3689999886543 45557999999843 222 12358876555544443
No 192
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=55.19 E-value=5.1 Score=22.45 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
++.||.|+..|..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3569999988865
No 193
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.19 E-value=68 Score=24.47 Aligned_cols=37 Identities=22% Similarity=0.073 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 659 RDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQAN 695 (877)
Q Consensus 659 ~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~ 695 (877)
++..+..++.+....-..+..+..-+-.++.+|..+.
T Consensus 38 lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 38 LQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333333333344444444444444444433
No 194
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=54.84 E-value=1 Score=35.45 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=29.2
Q ss_pred hccCccccccccccccccccc-ccchhh---------------hHHhHHHHhccCCCCCCCCCCCCCCCCCcccC
Q 002816 818 EYREILKCSICLERPKEVVIT-KCYHLF---------------CNPCVQKVTESRHRKCPGCAASFSPNDVKPVY 876 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~~~~~~-~c~h~~---------------c~~C~~~~~~~~~~~Cp~c~~~~~~~~~~~~~ 876 (877)
+|-..+.||+|...+.-...- -+ -.+ |..|+... -.||.|+..|.-.|=.++.
T Consensus 4 ~LLdILaCP~cK~pL~l~~~~~~~-~~~ca~~~~~~~~~~~~~~~e~~~~~-----LvC~~c~~~YPI~dGIPvm 72 (97)
T 2k5r_A 4 KLLHLLCSPDTRQPLSLLESKGLE-ALNKAIVSGTVQRADGSIQNQSLHEA-----LITRDRKQVFRIEDSIPVL 72 (97)
T ss_dssp TTCSSCCCCTTSSCCEECCHHHHH-HHHHHHHHTCCBCTTSCBCCCCCSEE-----EECTTSCEEEEEETTEEEC
T ss_pred HHhhheECCCCCCcccccccchhh-hhhhhhhccccccccccccccccCCe-----EEcCCCCCCccccCCCccc
Confidence 466789999998755321100 00 011 22333322 2499999888766655443
No 195
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.80 E-value=2.4 Score=25.87 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 002816 823 LKCSICLERPKEVV 836 (877)
Q Consensus 823 l~C~~C~~~~~~~~ 836 (877)
+.||+|+..+.++-
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 78888888777653
No 196
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=53.54 E-value=6.3 Score=40.06 Aligned_cols=43 Identities=23% Similarity=0.574 Sum_probs=28.4
Q ss_pred cccccccccccccccc--ccchhhhHHhHHHHhcc---------CCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVIT--KCYHLFCNPCVQKVTES---------RHRKCPGCAA 865 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~--~c~h~~c~~C~~~~~~~---------~~~~Cp~c~~ 865 (877)
..|.+|...-.-.+.- .|...||..||..++.. ..-.|=+|.-
T Consensus 94 ~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 94 SYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp CSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred ccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4677776644222222 79999999999998853 2346888853
No 197
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=53.38 E-value=7.6 Score=28.17 Aligned_cols=45 Identities=22% Similarity=0.521 Sum_probs=27.4
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccC---CCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESR---HRKCPGCAASF 867 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~---~~~Cp~c~~~~ 867 (877)
-.|.+|+..-.-..--.|...|-..|+...+... .-.||.|....
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 5799998643211112677777777776544432 34899996543
No 198
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.61 E-value=7.9 Score=30.06 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=37.2
Q ss_pred CCCCCCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 26 KNPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQLK 72 (877)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~ 72 (877)
+.+=..++...-.||..|+.....+......++.+...|..++.+|+
T Consensus 40 K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 40 KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33434566667788999999999999988888888888888888775
No 199
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=52.57 E-value=7.7 Score=21.77 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSPN 870 (877)
Q Consensus 857 ~~~Cp~c~~~~~~~ 870 (877)
.+.|+.|+..|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1klr_A 2 TYQCQYCEFRSADS 15 (30)
T ss_dssp CCCCSSSSCCCSCS
T ss_pred CccCCCCCCccCCH
Confidence 35799999988653
No 200
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.28 E-value=66 Score=23.51 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002816 787 EDLEMGRRKVLRL 799 (877)
Q Consensus 787 ~el~~l~~~l~~l 799 (877)
..+..|+..+..+
T Consensus 54 ~eI~~LqseLDKf 66 (72)
T 3nmd_A 54 ELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 201
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=57.03 E-value=3.1 Score=23.56 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSP 869 (877)
Q Consensus 858 ~~Cp~c~~~~~~ 869 (877)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 457777777754
No 202
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=51.64 E-value=13 Score=29.85 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
.+.|+.|+..|..
T Consensus 73 ~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 73 PFKCQECGKGFCQ 85 (106)
T ss_dssp TTSCSSSCCCCSS
T ss_pred CeECCCcCCcccC
Confidence 4689999988865
No 203
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=51.63 E-value=5.8 Score=26.19 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=21.0
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAA 865 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~ 865 (877)
.+.|++|...|.....+. .|.. .....+++.|++|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 12 QVACEICGKIFRDVYHLN-RHKL------SHSGEKPYSSGPSSG 48 (48)
T ss_dssp SEEETTTTEEESSHHHHH-HHGG------GSCSCCCCCSCCCCC
T ss_pred CeeCCCCCcccCCHHHHH-HHHH------hcCCCCCccCCCCCC
Confidence 478999988887542221 1211 011224678999974
No 204
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=51.59 E-value=6.4 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSPN 870 (877)
Q Consensus 857 ~~~Cp~c~~~~~~~ 870 (877)
++.|+.|+..|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1paa_A 2 AYACGLCNRAFTRR 15 (30)
T ss_dssp CSBCTTTCCBCSSS
T ss_pred CcCCcccCcccCCh
Confidence 35699999888654
No 205
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=51.48 E-value=64 Score=23.09 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002816 599 EIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (877)
Q Consensus 599 ~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 639 (877)
.+..|+.++...+.+|..|.+.+.-..+..+.+..++-.+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 44455555555555555555555555555555555544443
No 206
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=51.07 E-value=5.9 Score=24.06 Aligned_cols=15 Identities=40% Similarity=0.913 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 456899999999753
No 207
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=51.04 E-value=3.4 Score=33.61 Aligned_cols=24 Identities=25% Similarity=0.684 Sum_probs=19.8
Q ss_pred cccccccccccccccccccchhhh
Q 002816 822 ILKCSICLERPKEVVITKCYHLFC 845 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c 845 (877)
...|..|...-..-+.+.|||++|
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEE
T ss_pred CCcCccccCCCCeeeeeecCcccc
Confidence 357999988766667889999999
No 208
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.21 E-value=13 Score=23.96 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=20.9
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||+|
T Consensus 12 ~~~C~~C~k~F~~~~~L~-~H~------~~H~~~k~~~C~~c 46 (46)
T 2emh_A 12 PYICTVCGKAFTDRSNLI-KHQ------KIHTGEKPSGPSSG 46 (46)
T ss_dssp SEECTTTCCEESSHHHHH-HHH------HHHHCSSCSSSCCC
T ss_pred CcCCCCCCchhCCHHHHH-HHH------HhcCCCCCCCCCCC
Confidence 478999988887653332 222 11223356789987
No 209
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.09 E-value=15 Score=27.27 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=22.0
Q ss_pred cccccc--cccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 822 ILKCSI--CLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 822 ~l~C~~--C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
.+.|++ |...|.....+. .|+ ......+++.|+.|+..|+
T Consensus 38 ~~~C~~~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C~k~F~ 79 (79)
T 2dlk_A 38 SFSCPEPACGKSFNFKKHLK-EHM------KLHSDTRDYICEFSGPSSG 79 (79)
T ss_dssp CEECSCTTTCCEESSHHHHH-HHH------HHHHTSCCCSCCSSSCCCC
T ss_pred CeECCCCCCcCccCCHHHHH-HHH------HHhCCCCCeeCCCCCCCCC
Confidence 356666 666665432221 122 1122235678999999884
No 210
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.01 E-value=17 Score=23.43 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=20.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C 46 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSCT-QHQ------RLHTGQRPSGPSSG 46 (46)
T ss_dssp SSSBTTTTBCCSSHHHHH-HHH------HHHHSCCCCCCCCC
T ss_pred CcCCCCCCchhCCHHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478999988887643221 222 11223356789887
No 211
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=49.78 E-value=6.1 Score=33.16 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=23.8
Q ss_pred Ccccccccccccc-c-ccccccchhhhHHhHHHHhc
Q 002816 821 EILKCSICLERPK-E-VVITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 821 ~~l~C~~C~~~~~-~-~~~~~c~h~~c~~C~~~~~~ 854 (877)
.-+.|..|...+. . .....=|..||..|....+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 3467888888773 2 34556688888888877765
No 212
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=55.30 E-value=3.5 Score=23.49 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSP 869 (877)
Q Consensus 858 ~~Cp~c~~~~~~ 869 (877)
+.|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 457777777754
No 213
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=49.68 E-value=8.3 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
+..|+.|+..|..
T Consensus 2 p~~C~~C~k~F~~ 14 (33)
T 1rim_A 2 KFACPECPKRFMR 14 (33)
T ss_dssp CCCCSSSCCCCSS
T ss_pred cccCCCCCchhCC
Confidence 4579999998865
No 214
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.64 E-value=4.9 Score=28.61 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=28.6
Q ss_pred ccccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~~ 871 (877)
..+|..|...+.- +..-.||.+||... ++. ....||+--+..+...
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~H---R~~-e~H~C~fDyk~~gr~~ 61 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSH---RYP-EKHECSFDFKEVGSGP 61 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSS---CSS-TTTTCCCCCSCSCCCS
T ss_pred CCcChhhCCcccccCeEeecCCEecccC---CCc-cccCCCcchhHHhHHH
Confidence 3689999986543 23338999999843 222 2335887766555443
No 215
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=49.55 E-value=9.7 Score=28.87 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=32.6
Q ss_pred CCCCCCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 27 NPFFPSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQ 70 (877)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~ 70 (877)
.|=..++...-.+|..|+.....+....+.++.+...|..++.+
T Consensus 36 ~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 36 HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33335666677888888888888888888888888777776654
No 216
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=49.49 E-value=15 Score=23.68 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=20.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2emk_A 12 PYECKECGKAFSQTTHLI-QHQ------RVHTGEKPSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSCHHHHH-HHH------HHHSSCCCSSCCCC
T ss_pred ceECCCCCchhCCHHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478999888887643221 222 11222346788887
No 217
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.48 E-value=14 Score=23.82 Aligned_cols=35 Identities=11% Similarity=-0.021 Sum_probs=20.8
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2emp_A 12 PYMCNECGKAFSVYSSLT-THQ------VIHTGEKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESCHHHHH-HHH------HHHHCCSCCSCCCC
T ss_pred CeECCCCCchhCCHHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478999988887643322 232 11223356789888
No 218
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=49.43 E-value=12 Score=29.39 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
..+.||.|+..|..
T Consensus 74 ~~~~C~~C~~~f~~ 87 (100)
T 2ebt_A 74 KPFQCGVCNRSFSR 87 (100)
T ss_dssp CSCBCSSSCCBCSS
T ss_pred CCeECCCCcCccCC
Confidence 46789999999965
No 219
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=49.06 E-value=2 Score=32.36 Aligned_cols=47 Identities=23% Similarity=0.526 Sum_probs=27.2
Q ss_pred ccccccccccccccccc---ccchhhhHHhHHHHhcc---CCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVIT---KCYHLFCNPCVQKVTES---RHRKCPGCAASFS 868 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~---~c~h~~c~~C~~~~~~~---~~~~Cp~c~~~~~ 868 (877)
...|++|........++ .|..-|=..|+.-.... ....||.|...+.
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 35799998876542223 56444444555432221 3568999976654
No 220
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.97 E-value=66 Score=35.25 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002816 783 KRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 783 ~~~~~el~~l~~~l~~l~ 800 (877)
.+++..+..|+..|..+.
T Consensus 514 ~~lq~qL~~L~~el~~~r 531 (575)
T 2i1j_A 514 ERLHNQLKALKQDLARSC 531 (575)
T ss_dssp HHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555544
No 221
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=48.79 E-value=7.7 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.421 Sum_probs=23.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|++|...|.....+. .|. .......++.||.|+..|...
T Consensus 34 ~~~C~~C~~~f~~~~~l~-~H~------~~h~~~~~~~C~~C~~~f~~~ 75 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLT-THI------RTHTGEKPFACDICGRKFARS 75 (90)
T ss_dssp CEECTTTCCEESCHHHHH-HHH------HHHHCCCCEECTTTCCEESSH
T ss_pred CccCCCCCcccCCHHHHH-HHH------HHcCCCCCccCCCCCchhCCH
Confidence 366777776665432221 222 112223456899999988653
No 222
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.78 E-value=16 Score=23.51 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=20.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C 46 (46)
T 2eov_A 12 PYKCSDCGKSFTWKSRLR-IHQ------KCHTGERHSGPSSG 46 (46)
T ss_dssp SCBCSSSCCBCSSHHHHH-HHH------HHHSCCSSCCSCCC
T ss_pred CccCCccChhhCCHHHHH-HHH------HhcCCCCCCCCCCC
Confidence 478999988887643221 222 11122346788887
No 223
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=48.40 E-value=11 Score=41.67 Aligned_cols=44 Identities=20% Similarity=0.532 Sum_probs=28.6
Q ss_pred ccccccccccccccc------ccchhh--hHHhHHHHhccC-------CCCCCCCCCCC
Q 002816 824 KCSICLERPKEVVIT------KCYHLF--CNPCVQKVTESR-------HRKCPGCAASF 867 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~------~c~h~~--c~~C~~~~~~~~-------~~~Cp~c~~~~ 867 (877)
.|+.|+=+|+-...+ +....| |..|-..+.... +..||.|+-.+
T Consensus 41 nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 41 NCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred cCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 688887766532222 233444 999999987642 34799998654
No 224
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=48.28 E-value=4.2 Score=22.49 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
+..|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 4568888888864
No 225
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.27 E-value=15 Score=23.71 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=20.5
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2emy_A 12 PYECHECGKAFSRKYQLI-SHQ------RTHAGEKPSGPSSG 46 (46)
T ss_dssp CEECSSSCCEESSHHHHH-HHH------HHHTTSCCSCSSCC
T ss_pred CcCCCCCCcccCcHHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478999988887643321 222 11222356789988
No 226
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.21 E-value=13 Score=24.02 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=20.2
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||+|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~c 46 (46)
T 2ytk_A 12 PYKCNECGKVFTQNSHLT-NHW------RIHTGEKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHH------HHHSSSSCSSCCCC
T ss_pred CEeCCcCCCccCCHHHHH-HHH------HHHCCCCCCCCCCC
Confidence 478999988887643221 222 11222346789888
No 227
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=47.79 E-value=7 Score=21.35 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSP 869 (877)
Q Consensus 858 ~~Cp~c~~~~~~ 869 (877)
+.|+.|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 469999988865
No 228
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=47.75 E-value=9.4 Score=29.29 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
.+..||.|+..|..
T Consensus 64 ~~~~C~~C~~~f~~ 77 (89)
T 2wbs_A 64 RPFQCQKCDRAFSR 77 (89)
T ss_dssp CCEECSSSSCEESS
T ss_pred CCccCCCCCcccCC
Confidence 45689999999865
No 229
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=47.04 E-value=8.9 Score=28.82 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
.+..||.|+..|..
T Consensus 56 ~~~~C~~C~~~f~~ 69 (82)
T 2kmk_A 56 KPHKCQVCGKAFSQ 69 (82)
T ss_dssp CCEECTTTSCEESS
T ss_pred CCCcCCCcchhhCC
Confidence 45689999998865
No 230
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=47.03 E-value=5.8 Score=34.43 Aligned_cols=42 Identities=24% Similarity=0.619 Sum_probs=27.6
Q ss_pred ccccccccccccccc--cccchhhhHHhHHHHhccC---------CCCCCCCC
Q 002816 823 LKCSICLERPKEVVI--TKCYHLFCNPCVQKVTESR---------HRKCPGCA 864 (877)
Q Consensus 823 l~C~~C~~~~~~~~~--~~c~h~~c~~C~~~~~~~~---------~~~Cp~c~ 864 (877)
..|.||...-.-..- -.|...||..||+.++... +-.|=+|.
T Consensus 80 ~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 80 SYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred ceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 467777764321111 1589999999999987642 23587775
No 231
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.95 E-value=5 Score=28.90 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=28.1
Q ss_pred cccccccccccccc----cccccchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEV----VITKCYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~----~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
..+|..|.....-+ ..-.||.+||..- ++. ....|++--+..+..
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~~H---Ry~-e~H~C~fDyk~~gr~ 63 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCMLH---RLP-EQHDCTFDHMGRGSG 63 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCTTT---CST-GGGTCSSCSSCSSCC
T ss_pred CCcchhhCCeecccccCceEecCCCEehhcc---CCc-cccCCcccccccccc
Confidence 46899999877654 3338999999843 221 123487765554433
No 232
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=46.68 E-value=8 Score=32.95 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
++..||.|+..|..
T Consensus 77 k~~~C~~C~k~F~~ 90 (133)
T 2lt7_A 77 RRYQCLACGKSFIN 90 (133)
T ss_dssp CCEEESSSCCEESS
T ss_pred ccccCCCCCCCcCC
Confidence 35678888888864
No 233
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=46.49 E-value=5 Score=22.52 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSPN 870 (877)
Q Consensus 858 ~~Cp~c~~~~~~~ 870 (877)
+.||.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 4688888888653
No 234
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=46.42 E-value=12 Score=42.48 Aligned_cols=24 Identities=21% Similarity=0.690 Sum_probs=18.0
Q ss_pred hhHHhHHHHhccC-------CCCCCCCCCCC
Q 002816 844 FCNPCVQKVTESR-------HRKCPGCAASF 867 (877)
Q Consensus 844 ~c~~C~~~~~~~~-------~~~Cp~c~~~~ 867 (877)
+|..|-..+.... +..||.|+-.+
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCee
Confidence 4999999987642 23799998654
No 235
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=46.37 E-value=4.6 Score=22.49 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
++.|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4568889888865
No 236
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.35 E-value=15 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=19.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRLN-RHS------MVHTAEKPSGPSSG 46 (46)
T ss_dssp SCCCSSSCCCCSSHHHHH-HHH------HHTTCCCSSSCCCC
T ss_pred CcCCCcCCchhCCHHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478888888887543221 122 11122346678887
No 237
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.99 E-value=17 Score=23.43 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=20.5
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2eoo_A 12 PYGCNECGKNFGRHSHLI-EHL------KRHFREKSSGPSSG 46 (46)
T ss_dssp CEECSSSCCEESSHHHHH-HHH------HHHHSTTSSCCSCC
T ss_pred CEEccccCcccCCHHHHH-HHH------HHHcCCCCCCCCCC
Confidence 478999988887653321 222 11223346788887
No 238
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=45.92 E-value=5.6 Score=29.18 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=26.4
Q ss_pred ccccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
..+|..|...+-- +..-.||..||..- ++. ....||+--+..+
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~H---Ry~-e~H~C~fDyk~~g 68 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLH---RYS-DKHNCPYDYKAEA 68 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSS---CST-TTTTCCCCGGGTS
T ss_pred CCcChhhCCcccccCeecCCCCEechhc---CCC-ccCCCcchhhhhc
Confidence 3689999886433 34446999999733 222 2345877654443
No 239
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=45.70 E-value=91 Score=23.22 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHhhHHHHHHHHhHHHHHHHHHHHHHH
Q 002816 211 NLRLALMDLHLKHKSLTRELQSRQDIDAKDKAKLNRLKGELESAVKELEECNC 263 (877)
Q Consensus 211 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~l~~ele~~~~ 263 (877)
.+-.++..+.-++..++++.......+.....++..++..+..-..++..+..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444444444444444444444444445555555555555555555443
No 240
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.63 E-value=18 Score=23.23 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=20.7
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C 46 (46)
T 2em8_A 12 PYKCVECGKGYKRRLDLD-FHQ------RVHTGEKLSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHH------HHHHCCCCCCSCCC
T ss_pred CeECcccCchhCCHHHHH-HHH------HHHcCCCCCCCCCC
Confidence 478999988887543221 232 11223356789888
No 241
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=45.59 E-value=12 Score=42.56 Aligned_cols=24 Identities=25% Similarity=0.775 Sum_probs=18.2
Q ss_pred hhHHhHHHHhccC-------CCCCCCCCCCC
Q 002816 844 FCNPCVQKVTESR-------HRKCPGCAASF 867 (877)
Q Consensus 844 ~c~~C~~~~~~~~-------~~~Cp~c~~~~ 867 (877)
+|..|-..+..+. +..||.|+-.+
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceE
Confidence 4999999987643 23799998654
No 242
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=45.03 E-value=4 Score=30.79 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.9
Q ss_pred Cccccccccccccc
Q 002816 821 EILKCSICLERPKE 834 (877)
Q Consensus 821 ~~l~C~~C~~~~~~ 834 (877)
..+.|.+|+-.|..
T Consensus 26 ~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 26 KLFRCIQCGFEYDE 39 (81)
T ss_dssp CEEEETTTCCEEET
T ss_pred ceEEeCCCCEEEcC
Confidence 35899999988764
No 243
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.98 E-value=16 Score=23.47 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=20.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2emm_A 12 PHKCNECGKSFIQSAHLI-QHQ------RIHTGEKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHH------HHHSCCCTTSSSCC
T ss_pred CeeCCCCChhhCCHHHHH-HHH------HHhCCCCCCCCCCC
Confidence 478999988887643221 122 11222346788887
No 244
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.88 E-value=15 Score=23.59 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=10.4
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2eq4_A 12 LYNCKECGKSFSRA 25 (46)
T ss_dssp CCCBTTTTBCCSCH
T ss_pred CeECCCCCCccCch
Confidence 47888888877654
No 245
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=44.86 E-value=16 Score=30.13 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
...||.|+..|..
T Consensus 66 ~~~C~~C~~~f~~ 78 (124)
T 2dlq_A 66 VFTCSVCQETFRR 78 (124)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4578888888764
No 246
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=44.84 E-value=6 Score=45.52 Aligned_cols=33 Identities=27% Similarity=0.670 Sum_probs=26.3
Q ss_pred cccccccccccccc----------ccccchhhhHHhHHHHhcc
Q 002816 823 LKCSICLERPKEVV----------ITKCYHLFCNPCVQKVTES 855 (877)
Q Consensus 823 l~C~~C~~~~~~~~----------~~~c~h~~c~~C~~~~~~~ 855 (877)
-.||+|+-...+.+ .+.||-.||..|++.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 47999987665533 4589999999999988875
No 247
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.78 E-value=1.3e+02 Score=24.74 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002816 762 YKSRLTLMELQIELVKERFAKKRLEEDLEMGRRKVLRLQAQ 802 (877)
Q Consensus 762 ~~l~~~l~~~~~~l~~~~~~~~~~~~el~~l~~~l~~l~~~ 802 (877)
..+...+..++.++..-.........+...|+..+..+...
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433333444444555555555555433
No 248
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=44.66 E-value=7 Score=20.72 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=7.5
Q ss_pred CCCCCccccccCCCC
Q 002816 15 SSISPTAATAKKNPF 29 (877)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (877)
+++-||+||+ ++|
T Consensus 6 sivqppappp--naf 18 (26)
T 2lkw_A 6 SIVQPPAPPP--NAF 18 (26)
T ss_pred ccccCCCcCC--Cee
Confidence 4555656666 565
No 249
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.39 E-value=18 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=20.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C 46 (46)
T 2ytd_A 12 PYKCSECGKAFHRHTHLN-EHR------RIHTGYRPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHH------HHHTCCCSSCSSCC
T ss_pred CeECCCCCCeeCChHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478998888887543221 222 11222346789988
No 250
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.34 E-value=18 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=19.2
Q ss_pred ccccccccccccc-cccccchhhhHHhHHHHhc
Q 002816 823 LKCSICLERPKEV-VITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 823 l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~ 854 (877)
+.|..|...+... ....=|..||..|....+.
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 5666666665542 3334567777777766544
No 251
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=44.14 E-value=9.8 Score=31.85 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=17.1
Q ss_pred cccccccccccccc-cc---ccchhhhHHh
Q 002816 823 LKCSICLERPKEVV-IT---KCYHLFCNPC 848 (877)
Q Consensus 823 l~C~~C~~~~~~~~-~~---~c~h~~c~~C 848 (877)
..|..|...+.... +. ..+|.-|+.|
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C 91 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKC 91 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTTSBC
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccccCc
Confidence 68999999887653 22 4567655543
No 252
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=44.13 E-value=14 Score=23.87 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=19.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||+|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~c 46 (46)
T 2ema_A 12 RYKCNECGKVFSRNSQLS-QHQ------KIHTGEKPSGPSSG 46 (46)
T ss_dssp CEECSSSCCEESSHHHHH-HHH------TGGGCCCCCSSSCC
T ss_pred CcCCCCCcchhCCHHHHH-HHH------HhcCCCCCCCCCCC
Confidence 478988888876543221 121 11112346788887
No 253
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.03 E-value=2.9e+02 Score=28.47 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=0.0
Q ss_pred cccccccccc
Q 002816 828 CLERPKEVVI 837 (877)
Q Consensus 828 C~~~~~~~~~ 837 (877)
|-..++..|+
T Consensus 292 CsKTitKtVi 301 (491)
T 1m1j_A 292 CTRTVTKKVI 301 (491)
T ss_dssp ----------
T ss_pred eeeeEEeEEe
Confidence 4444444443
No 254
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.94 E-value=10 Score=26.98 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=27.1
Q ss_pred ccccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
..+|..|...+.- +..-.||.+||... ++. ....||+--+..+.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~H---Ry~-e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCGTTFCGSH---RYP-EVHGCTFDFKSAGS 59 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSSCEECTTT---CST-TTTTCCCCCSCCCC
T ss_pred CCcChhhCCccCccCEEeecCCEecccc---CCc-ccCCCCchhhHHHH
Confidence 4689999986543 33347999999843 222 23358766544443
No 255
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=43.79 E-value=4.4 Score=32.33 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=23.0
Q ss_pred ccccccccccccccccc---ccchhhhHHhHHHHhc--cCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVIT---KCYHLFCNPCVQKVTE--SRHRKCPGCAA 865 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~---~c~h~~c~~C~~~~~~--~~~~~Cp~c~~ 865 (877)
...| ||........++ .|..-|=..|+..... +....||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4678 798766543333 4533333344432221 12468999964
No 256
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.59 E-value=9.1 Score=22.91 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|++.|..
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 35679999998865
No 257
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=43.27 E-value=3.7 Score=22.83 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
++.||.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 4568888888864
No 258
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=43.07 E-value=10 Score=34.85 Aligned_cols=35 Identities=17% Similarity=0.472 Sum_probs=25.9
Q ss_pred Ccccccccccccccc-cccccchhhhHHhHHHHhcc
Q 002816 821 EILKCSICLERPKEV-VITKCYHLFCNPCVQKVTES 855 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~~ 855 (877)
.-+.|..|...+... ....=|..||..|....+.+
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 347888898887654 33456889999999887653
No 259
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=42.59 E-value=5.8 Score=22.15 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSP 869 (877)
Q Consensus 858 ~~Cp~c~~~~~~ 869 (877)
+.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 468888888754
No 260
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.43 E-value=8.8 Score=29.22 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.8
Q ss_pred ccccccccccccc
Q 002816 822 ILKCSICLERPKE 834 (877)
Q Consensus 822 ~l~C~~C~~~~~~ 834 (877)
.+.|++|...|..
T Consensus 15 ~~~C~~C~~~f~~ 27 (86)
T 1x6h_A 15 PYACSHCDKTFRQ 27 (86)
T ss_dssp CEECSSSSCEESS
T ss_pred CCcCCCCCCccCC
Confidence 4788888887764
No 261
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=42.41 E-value=14 Score=33.97 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=30.2
Q ss_pred cccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFS 868 (877)
Q Consensus 823 l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~ 868 (877)
+.|..|...+.. .....=|+.||..|....+. .+|..|+.+.+
T Consensus 143 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~---~kc~~C~~~~g 186 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG---PKGFGFGQGAG 186 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC---CCCCCCCCCCC
T ss_pred CCccccCCCCCCCcccccCCEEeCHHHHHHhcC---CcCCCCCCccc
Confidence 567777776643 33445688899999887655 46999987754
No 262
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.91 E-value=19 Score=23.08 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=20.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.- .....+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~k~~~C~~C 46 (46)
T 2ytt_A 12 PYQCSECGKSFSGSYRLT-QHWI------THTREKPSGPSSG 46 (46)
T ss_dssp TTCCSSSCCCCSSHHHHH-HHHT------HHHHCCCCSCCCC
T ss_pred CeeCCCCCcccCCHHHHH-HHHH------HcCCCCCCCCCCC
Confidence 478999988887653332 2321 1122356788887
No 263
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=41.88 E-value=23 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.503 Sum_probs=21.0
Q ss_pred Cccccccccccccccccc---ccchhhhHHhHHHH
Q 002816 821 EILKCSICLERPKEVVIT---KCYHLFCNPCVQKV 852 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~---~c~h~~c~~C~~~~ 852 (877)
+.-.|+||...- ....+ .||.+|=..|+.+.
T Consensus 14 ~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 456899997533 33333 46788888999886
No 264
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.74 E-value=12 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=27.5
Q ss_pred ccccccccccccc-ccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKE-VVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
..+|..|...+.- +..-.||.+||..- ++. ....|++--+..+.
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~H---Ry~-e~H~C~fDyk~~gr 69 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTH---RYP-ESHECQFDFKGVAS 69 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTT---CST-TTSCCCSCTTSCCC
T ss_pred CccchhhcCcccccceEeccCCEecccc---CCC-cCCCCcCchhHHhH
Confidence 3689999876543 33337999999843 222 23358877555544
No 265
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.47 E-value=7.6 Score=32.30 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=15.3
Q ss_pred cccchhhhHHhHHHHhccCCC-CCCCCCCCC
Q 002816 838 TKCYHLFCNPCVQKVTESRHR-KCPGCAASF 867 (877)
Q Consensus 838 ~~c~h~~c~~C~~~~~~~~~~-~Cp~c~~~~ 867 (877)
..|||.|=. ..... .||.|+.+.
T Consensus 77 ~~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 77 KDCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred CCCCCEEeC-------CCCCCCcCccccCCC
Confidence 367777654 12355 799998874
No 266
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.30 E-value=17 Score=23.37 Aligned_cols=35 Identities=11% Similarity=-0.027 Sum_probs=19.6
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||+|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~c 46 (46)
T 2ytj_A 12 PYICAECGKAFTIRSNLI-KHQ------KIHTKQKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHH------HHTSCCCCSSCSCC
T ss_pred CeECCCCChhhCCHHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478999988887543221 121 11112346778887
No 267
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=41.28 E-value=17 Score=30.04 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=29.3
Q ss_pred Cccccccccccccccc---------------cc---ccchhhh-HHhHHHHh----ccCCCCCCC--CCCCCCCCC
Q 002816 821 EILKCSICLERPKEVV---------------IT---KCYHLFC-NPCVQKVT----ESRHRKCPG--CAASFSPND 871 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~---------------~~---~c~h~~c-~~C~~~~~----~~~~~~Cp~--c~~~~~~~~ 871 (877)
..+.|++|...|.... .- .||-.|- ..-+.... ....+.||+ |+..|....
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~ 108 (124)
T 1ubd_C 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQST 108 (124)
T ss_dssp CCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTT
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHH
Confidence 3478999988775411 11 2665552 22222222 234678975 999997654
No 268
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.84 E-value=18 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=21.1
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.- .....+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~~~~~C~~C 46 (46)
T 2yu8_A 12 PYKCNECGKVFTQNSHLA-RHRR------VHTGGKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSSHHHH-HHTH------HHHSCCCSCSCCC
T ss_pred CeECCcCCchhCCHHHHH-HHHH------hcCCCCCCCCCCC
Confidence 478999998887653332 2321 1223356789988
No 269
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.96 E-value=19 Score=23.14 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=20.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2en6_A 12 PYGCNECGKTFSQKSILS-AHQ------RTHTGEKPSGPSSG 46 (46)
T ss_dssp CEEETTTTEEESSHHHHH-HHH------HHHSSCCCSSSCCC
T ss_pred CeECCCCCcccCchHHHH-HHH------HHcCCCCCCCCCCC
Confidence 478999988887643322 222 11222356789887
No 270
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.94 E-value=21 Score=22.86 Aligned_cols=35 Identities=14% Similarity=-0.001 Sum_probs=20.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2yso_A 12 SHQCRECGEIFFQYVSLI-EHQ------VLHMGQKNSGPSSG 46 (46)
T ss_dssp CEECTTTCCEESSHHHHH-HHH------HHHSCCSCCCTTCC
T ss_pred CEEccccChhhCCHHHHH-HHH------HHhCCCCCCCCCCC
Confidence 478999988887643321 232 11222346789887
No 271
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=39.89 E-value=11 Score=27.13 Aligned_cols=33 Identities=27% Similarity=0.563 Sum_probs=22.0
Q ss_pred cccccccccccccccccccch-h-hhHHhHHHHhc
Q 002816 822 ILKCSICLERPKEVVITKCYH-L-FCNPCVQKVTE 854 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h-~-~c~~C~~~~~~ 854 (877)
.+.|+.|+........+.-|. + .|..|+.....
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c~~ 52 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCND 52 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHHHHHH
Confidence 478999998776543332232 3 49999987654
No 272
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.88 E-value=22 Score=22.43 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=20.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.|+.|
T Consensus 10 ~~~C~~C~k~f~~~~~L~-~H~------~~H~~~~~~~C~~C 44 (44)
T 2emx_A 10 PFGCSCCEKAFSSKSYLL-VHQ------QTHAEEKPSGPSSG 44 (44)
T ss_dssp CEECSSSSCEESSHHHHH-HHH------HHHTSSCSCSCCCC
T ss_pred CccCCCCCcccCCHHHHH-HHH------HHhCCCCCCCCCCC
Confidence 478999988887653322 232 11222346778887
No 273
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=39.84 E-value=3 Score=22.10 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.3
Q ss_pred hhhhHHhHHHHhc
Q 002816 842 HLFCNPCVQKVTE 854 (877)
Q Consensus 842 h~~c~~C~~~~~~ 854 (877)
..||..|.+.|+-
T Consensus 5 dffcetcskpwlv 17 (26)
T 1loi_A 5 DFFCETCSKPWLV 17 (26)
T ss_dssp HHHHHTSSCTTGG
T ss_pred HHHHHhcCCchhh
Confidence 4578888877654
No 274
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.70 E-value=12 Score=30.49 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=9.3
Q ss_pred ccccccccccccc
Q 002816 822 ILKCSICLERPKE 834 (877)
Q Consensus 822 ~l~C~~C~~~~~~ 834 (877)
.+.|++|...|..
T Consensus 19 ~~~C~~C~k~f~~ 31 (115)
T 2dmi_A 19 KFRCKDCSAAYDT 31 (115)
T ss_dssp SEEBSSSSCEESS
T ss_pred CEECCccCchhcC
Confidence 4678888777764
No 275
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.59 E-value=21 Score=26.99 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=28.0
Q ss_pred cccccccccccc-ccccc---cc---chhhhHHhHHHHhc-cCCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPK-EVVIT---KC---YHLFCNPCVQKVTE-SRHRKCPGCAASFSPND 871 (877)
Q Consensus 822 ~l~C~~C~~~~~-~~~~~---~c---~h~~c~~C~~~~~~-~~~~~Cp~c~~~~~~~~ 871 (877)
...| +|...+. ...++ .| .|..|-........ ...+.||.|.......-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCCc
Confidence 3567 7988774 22233 35 35555544443332 24678999988765443
No 276
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.55 E-value=16 Score=23.39 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=19.7
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|. ......+++.||.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~-~H~------~~H~~~k~~~C~~C 46 (46)
T 2epw_A 12 PCKCTECGKAFCWKSQLI-MHQ------RTHVDDKHSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSSHHHH-HHH------HHCCSCCCSCCCCC
T ss_pred CeeCCCCCCccCCHHHHH-HHH------HHhCCCCCCCCCCC
Confidence 478999988887653321 121 11112245678887
No 277
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=39.47 E-value=11 Score=33.42 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=27.5
Q ss_pred ccccccccccc-----ccccc-c---chhhhHHhHHHH-------------hccCC-----CCCCCCCCCCCC
Q 002816 824 KCSICLERPKE-----VVITK-C---YHLFCNPCVQKV-------------TESRH-----RKCPGCAASFSP 869 (877)
Q Consensus 824 ~C~~C~~~~~~-----~~~~~-c---~h~~c~~C~~~~-------------~~~~~-----~~Cp~c~~~~~~ 869 (877)
.|+.|+..-.. .-..+ - .++.|.+|-... +.... ..||+|+.++..
T Consensus 77 ~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~~ 149 (200)
T 3gox_A 77 ICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIV 149 (200)
T ss_dssp ECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEEB
T ss_pred ECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCCc
Confidence 79999763221 11112 3 478899996532 11122 469999998863
No 278
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.39 E-value=7.4 Score=23.62 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 356799999988764
No 279
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=39.39 E-value=10 Score=22.04 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
++.|+.|++.|..
T Consensus 2 p~~C~~C~k~f~~ 14 (32)
T 2kfq_A 2 AFACPACPKRFMR 14 (32)
T ss_dssp CSSSSSSCTTHHH
T ss_pred CCCCCCCCcccCC
Confidence 4579999998864
No 280
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.21 E-value=9.2 Score=30.74 Aligned_cols=42 Identities=12% Similarity=0.278 Sum_probs=23.7
Q ss_pred cccccccccccccccccccchhhhHHhHHHHh----ccCCCCCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVT----ESRHRKCPGCAASFSPN 870 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~----~~~~~~Cp~c~~~~~~~ 870 (877)
.+.|+.|...|.....+. .|. .... ..+++.|+.|++.|...
T Consensus 18 py~C~~Cgk~F~~~~~L~-~H~------r~~H~~~~~ekpf~C~~Cgk~F~~~ 63 (102)
T 2ghf_A 18 GYECKYCTFQTPDLNMFT-FHV------DSEHPNVVLNSSYVCVECNFLTKRY 63 (102)
T ss_dssp SEECSSCSCEESCHHHHH-HHH------HHHCSSCCCSCCEEETTTTEEESST
T ss_pred CcCCCCCCCccCCHHHHH-HHH------HhhCCCCCCCCCcCCCCCCcccCCH
Confidence 478999988886542221 121 0001 12356788888888653
No 281
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=39.19 E-value=14 Score=25.11 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=22.4
Q ss_pred cCcccccccccccccccccccch-h-hhHHhHHHHh
Q 002816 820 REILKCSICLERPKEVVITKCYH-L-FCNPCVQKVT 853 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c~h-~-~c~~C~~~~~ 853 (877)
...+.|+.|+........+.-|. + .|..|+....
T Consensus 9 ~~~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~~~ 44 (51)
T 2ds5_A 9 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCN 44 (51)
T ss_dssp CCCCBCTTTCCBTTTSSCEEECSSCEEEHHHHHHHH
T ss_pred CCCcEecCCCCCHHHhcccCCCCCCEehHHHHHHHH
Confidence 33478999998776544333333 3 4999998654
No 282
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.12 E-value=17 Score=23.41 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=19.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.- .....+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~~~~~C~~C 46 (46)
T 2eml_A 12 PYECSVCGKAFSHRQSLS-VHQR------IHSGKKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHHG------GGSSCCCSCSSCC
T ss_pred CeeCCCcCCccCCHHHHH-HHHH------HhcCCCCCCCCCC
Confidence 478999988887543221 1211 1112246778887
No 283
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.79 E-value=18 Score=23.21 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=10.8
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2enc_A 12 PFKCEECGKGFYTN 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CcCCCCCCCcCCCh
Confidence 47899998888754
No 284
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.74 E-value=49 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=16.1
Q ss_pred cchhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002816 38 IDTAVLQFQNQKLVQKLETQKVEYSALENK 67 (877)
Q Consensus 38 ~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~ 67 (877)
.|+..|+..+..|......+..++.++.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655554444444444433
No 285
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.66 E-value=16 Score=23.42 Aligned_cols=35 Identities=11% Similarity=-0.058 Sum_probs=19.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.. .....+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~~~~~C~~C 46 (46)
T 2eme_A 12 PYVCDYCGKAFGLSAELV-RHQR------IHTGEKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHHG------GGCCCSCCSSCCC
T ss_pred CeECCCCChhhCCHHHHH-HHHH------hcCCCCCCCCCCC
Confidence 478999988887543221 1211 1112245778887
No 286
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.53 E-value=14 Score=23.90 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2em5_A 12 SHQCHECGRGFTLK 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCcCCCccCCH
Confidence 47888888888754
No 287
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.50 E-value=18 Score=23.28 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ep2_A 12 PYECSICGKSFTKK 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CcCCCCCCcccCCH
Confidence 47888888887754
No 288
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.23 E-value=11 Score=29.54 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
.+.||.|+..|..
T Consensus 64 ~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 64 PFKCQICPYASRN 76 (96)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCCCCccCC
Confidence 5689999988864
No 289
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=38.18 E-value=7 Score=25.93 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=15.9
Q ss_pred cCcccccccccccccccccccchhhhHHhH
Q 002816 820 REILKCSICLERPKEVVITKCYHLFCNPCV 849 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~ 849 (877)
.+.+.|+-|. .|..| .|.||..|-
T Consensus 9 eD~WkC~~C~-k~N~P-----l~ryC~rCw 32 (53)
T 2cr8_A 9 EDEWQCTECK-KFNSP-----SKRYCFRCW 32 (53)
T ss_dssp SCCEECSSSC-CEECS-----SCCBCTTTC
T ss_pred cceeeccccc-ccCCC-----ccchhHHHH
Confidence 4568999998 56667 455555553
No 290
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=38.03 E-value=6.7 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=20.8
Q ss_pred ccccccccccccccc-----ccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVV-----ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~-----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.+.|.+|+-.|.... -++=|..|=. + .....||.|+.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~------l-P~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWED------I-PADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGG------S-CTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhH------C-CCCCcCCCCCCC
Confidence 478999988775421 1122333211 0 123479999875
No 291
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.01 E-value=17 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=19.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.- .....+++.||.|
T Consensus 12 ~~~C~~C~k~F~~~~~L~-~H~~------~H~~~~~~~C~~C 46 (46)
T 2eoe_A 12 PYKCNECGKVFTQNSHLA-NHQR------IHTGVKPSGPSSG 46 (46)
T ss_dssp SSEETTTTEECSSHHHHH-HHHG------GGSCCCSCSSCCC
T ss_pred CeECCCcChhhCCHHHHH-HHHH------HcCCCCCCCCCCC
Confidence 478998888887543221 1210 1112246678887
No 292
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.95 E-value=20 Score=29.46 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=26.8
Q ss_pred ccccccccccccc---ccccccchhhhHHhHHHHhcc
Q 002816 822 ILKCSICLERPKE---VVITKCYHLFCNPCVQKVTES 855 (877)
Q Consensus 822 ~l~C~~C~~~~~~---~~~~~c~h~~c~~C~~~~~~~ 855 (877)
-+.|..|...+.+ +....=|..||..|....+.+
T Consensus 30 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred cCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 4789999988864 455577899999999887774
No 293
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.94 E-value=15 Score=26.85 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=5.4
Q ss_pred ccccccccccc
Q 002816 824 KCSICLERPKE 834 (877)
Q Consensus 824 ~C~~C~~~~~~ 834 (877)
.|..|...+..
T Consensus 7 ~C~~C~~~I~~ 17 (70)
T 2d8x_A 7 GCHQCGEFIIG 17 (70)
T ss_dssp BCSSSCCBCCS
T ss_pred cCccCCCEecc
Confidence 45555554443
No 294
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.48 E-value=9.1 Score=25.95 Aligned_cols=43 Identities=19% Similarity=0.638 Sum_probs=21.8
Q ss_pred ccccccccccccccc---ccchhhhHHhHHHHhcc---CCCCCCCCCCC
Q 002816 824 KCSICLERPKEVVIT---KCYHLFCNPCVQKVTES---RHRKCPGCAAS 866 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~---~c~h~~c~~C~~~~~~~---~~~~Cp~c~~~ 866 (877)
.|.+|+..-....++ .|...|=..|+...+.. ..-.||.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 488887654322222 45444444455432221 24579999653
No 295
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.87 E-value=7.9 Score=21.71 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
++.|+.|+..|..
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3568888888864
No 296
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=36.86 E-value=1.9 Score=31.71 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCccc
Q 002816 858 RKCPGCAASFSPNDVKPV 875 (877)
Q Consensus 858 ~~Cp~c~~~~~~~~~~~~ 875 (877)
..|| |+..+....++.+
T Consensus 22 ~~C~-CG~~~~~~k~rif 38 (71)
T 1gh9_A 22 RKCV-CGRTVNVKDRRIF 38 (71)
T ss_dssp EEET-TTEEEECCSSSCB
T ss_pred EECC-CCCeeeeceEEEE
Confidence 3588 8877766555443
No 297
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=36.78 E-value=8.2 Score=23.89 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|++.|...
T Consensus 7 kp~~C~~CgK~F~~~ 21 (36)
T 1fv5_A 7 ARFMCLPCGIAFSSP 21 (36)
T ss_dssp CCCEETTTTEECSCH
T ss_pred cCeECCCCCCccCCH
Confidence 467899999998753
No 298
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.71 E-value=11 Score=28.54 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=9.3
Q ss_pred ccccccccccccccc
Q 002816 823 LKCSICLERPKEVVI 837 (877)
Q Consensus 823 l~C~~C~~~~~~~~~ 837 (877)
..|..|...+...++
T Consensus 16 ~~C~~C~~~I~~~~v 30 (79)
T 2cor_A 16 YICQKCHAIIDEQPL 30 (79)
T ss_dssp CBCTTTCCBCCSCCC
T ss_pred CCCccCCCEecceEE
Confidence 467777776665443
No 299
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.62 E-value=7.8 Score=23.31 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2els_A 8 KIFTCEYCNKVFKF 21 (36)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCEECCCCCceeCC
Confidence 35679999988864
No 300
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.61 E-value=7.9 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 2elx_A 6 SGYVCALCLKKFVS 19 (35)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCcchhCC
Confidence 35679999988865
No 301
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=36.46 E-value=6.5 Score=28.85 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=10.7
Q ss_pred Cccccccccccccc
Q 002816 821 EILKCSICLERPKE 834 (877)
Q Consensus 821 ~~l~C~~C~~~~~~ 834 (877)
..+.|.+|.-.|..
T Consensus 6 ~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 6 GKYECEACGYIYEP 19 (70)
T ss_dssp SCEEETTTCCEECT
T ss_pred ceEEeCCCCEEEcC
Confidence 35889999887764
No 302
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=36.39 E-value=6.1 Score=33.31 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=25.7
Q ss_pred ccccccccccccccccccchhhhHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 823 LKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
+.|.+|...+..+..+.....+=.-- .....+++.||.|+..|..
T Consensus 42 ~~c~~~~~~~~~~~~~~~~~~l~~h~--~h~~~~~~~C~~C~k~f~~ 86 (129)
T 2wbt_A 42 LIRAIVKTLIHNPQLLDESSYLYRLL--ASKAISQFVCPLCLMPFSS 86 (129)
T ss_dssp HHHHHHHHHHHCGGGTTTHHHHHHHH--HHHHHCSEECTTTCCEESS
T ss_pred ccchhhhcccCCCcccCCHHHHHHHH--HhCCCCCeECCCCCcccCC
Confidence 56888877776544443322211111 1222356789999999965
No 303
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.29 E-value=9 Score=31.04 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSPN 870 (877)
Q Consensus 857 ~~~Cp~c~~~~~~~ 870 (877)
.+.||.|+..|...
T Consensus 65 ~~~C~~C~~~f~~~ 78 (110)
T 2csh_A 65 PYECNICAKRFMWR 78 (110)
T ss_dssp CEECSSSCCEESCH
T ss_pred CeeCCCCcchhcCH
Confidence 46799999988653
No 304
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.24 E-value=8.1 Score=23.16 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 8 KPYKCPQCSYASAI 21 (36)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCCCCCCCCcccCC
Confidence 35679999988865
No 305
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.08 E-value=16 Score=23.53 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=10.5
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2eq0_A 12 PYKCHECGKVFRRN 25 (46)
T ss_dssp CEECTTTCCEESSH
T ss_pred CeECCCCCchhCCH
Confidence 47888888887654
No 306
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=36.04 E-value=6.2 Score=30.26 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=22.4
Q ss_pred Cccccccccccccccc-----ccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 821 EILKCSICLERPKEVV-----ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~-----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
..+.|.+|+..|.... -++=|..|=. + .....||.|+.+
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fed------l-PddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFED------I-PDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGG------C-CTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhH------C-CCCCCCCCCCCC
Confidence 4589999998876421 1223433311 1 123479999874
No 307
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.93 E-value=13 Score=28.86 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=14.3
Q ss_pred ccccccccccccccccc---ccchhhhH
Q 002816 822 ILKCSICLERPKEVVIT---KCYHLFCN 846 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~---~c~h~~c~ 846 (877)
...|..|...+...++. ..+|.-|+
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF 52 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECF 52 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTC
T ss_pred CCCcccCCCEecccEEEECCceECccCC
Confidence 35788887776654433 34555444
No 308
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.74 E-value=14 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=20.3
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.- .....+++.||.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~k~~~C~~C 46 (46)
T 2ytg_A 12 PFKCGECGKSYNQRVHLT-QHQR------VHTGEKPSGPSSG 46 (46)
T ss_dssp SEECTTTCCEESSSHHHH-TTGG------GGSSCCSSCSCCC
T ss_pred CeECCCCCcccCCHHHHH-HHHH------HcCCCCCCCCCCC
Confidence 478999998887654332 2221 1112346778887
No 309
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.57 E-value=11 Score=29.15 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=11.2
Q ss_pred hhhHHhHHHHhcc
Q 002816 843 LFCNPCVQKVTES 855 (877)
Q Consensus 843 ~~c~~C~~~~~~~ 855 (877)
.||.-|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999873
No 310
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.47 E-value=11 Score=29.08 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=10.9
Q ss_pred hhhHHhHHHHhc
Q 002816 843 LFCNPCVQKVTE 854 (877)
Q Consensus 843 ~~c~~C~~~~~~ 854 (877)
.||.-|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999987
No 311
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.44 E-value=17 Score=23.42 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ene_A 12 PYKCNECGKVFRHN 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCCCCchhCCh
Confidence 47888888888754
No 312
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.33 E-value=8.8 Score=23.06 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 35679999988865
No 313
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=35.24 E-value=15 Score=23.65 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=10.5
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2el4_A 12 PYGCSQCAKTFSLK 25 (46)
T ss_dssp SEECSSSSCEESSH
T ss_pred ceECCCCCchhCCH
Confidence 47888888887654
No 314
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=34.87 E-value=8.1 Score=41.66 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=0.0
Q ss_pred hHHhHHHHhccCCCCCCCCCCCCCC
Q 002816 845 CNPCVQKVTESRHRKCPGCAASFSP 869 (877)
Q Consensus 845 c~~C~~~~~~~~~~~Cp~c~~~~~~ 869 (877)
|-.|..-.+. ..+.|.+|+.++..
T Consensus 183 CP~CTF~NHP-sl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 183 CPACTFANHP-QIGNCEICGHRLPN 206 (566)
T ss_dssp -------------------------
T ss_pred CCcccccCCh-hhhcccccCCcCCC
Confidence 8888766544 46789999999976
No 315
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=34.84 E-value=1.3e+02 Score=23.19 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002816 782 KKRLEEDLEMGRRKVLRLQ 800 (877)
Q Consensus 782 ~~~~~~el~~l~~~l~~l~ 800 (877)
+..|+++|.+|+..|+..+
T Consensus 70 Kq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 70 KDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4577888888888877554
No 316
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.75 E-value=13 Score=28.43 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCCchhhcchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 31 PSSEEKKIDTAVLQFQNQKLVQKLETQKVEYSALENKFAQL 71 (877)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L 71 (877)
.++...-.||..|+.....|...+..++.+...|..++..|
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555667788888888887777777777777766666554
No 317
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=34.67 E-value=19 Score=23.11 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=19.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.. .....+++.|+.|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~~~~~C~~C 46 (46)
T 2em9_A 12 PYNCKECGKSFRWASCLL-KHQR------VHSGEKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHGG------GGTSCCCCSTTCC
T ss_pred CeECCccccccCChHHHH-HHHH------HhCCCCCCCCCCC
Confidence 478999988887543221 1211 1112346778887
No 318
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.63 E-value=9 Score=23.16 Aligned_cols=15 Identities=47% Similarity=0.950 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elo_A 8 RSYSCPVCEKSFSED 22 (37)
T ss_dssp CCCEETTTTEECSSH
T ss_pred CCcCCCCCCCccCCH
Confidence 356799999888653
No 319
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.42 E-value=16 Score=23.49 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=10.5
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emf_A 12 HFECTECGKAFTRK 25 (46)
T ss_dssp CEECSSSCCEESCH
T ss_pred CeECCCCCchhCCH
Confidence 47888888887654
No 320
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.70 E-value=9.6 Score=22.88 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 8 LLYDCHICERKFKNE 22 (36)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCCccCCH
Confidence 356799999888653
No 321
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.52 E-value=16 Score=26.25 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=8.9
Q ss_pred ccccccccccccccc
Q 002816 823 LKCSICLERPKEVVI 837 (877)
Q Consensus 823 l~C~~C~~~~~~~~~ 837 (877)
..|+.|...+...++
T Consensus 6 ~~C~~C~~~I~~~~~ 20 (66)
T 1nyp_A 6 PICGACRRPIEGRVV 20 (66)
T ss_dssp CEETTTTEECCSCEE
T ss_pred CCCcccCCEecceEE
Confidence 467777766654433
No 322
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=33.46 E-value=7.9 Score=36.06 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=26.5
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhcc---CCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTES---RHRKCPGCAASF 867 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~---~~~~Cp~c~~~~ 867 (877)
...|.+|+..-.-.+.=.|...|...|+...+.. +.-.||.|...-
T Consensus 7 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3579999864321122257666666666543332 235799997654
No 323
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.45 E-value=21 Score=27.67 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=8.6
Q ss_pred ccccccccccccccc
Q 002816 823 LKCSICLERPKEVVI 837 (877)
Q Consensus 823 l~C~~C~~~~~~~~~ 837 (877)
..|..|...+...++
T Consensus 26 ~~C~~C~~~I~~~~v 40 (90)
T 2dar_A 26 PMCAHCNQVIRGPFL 40 (90)
T ss_dssp CBBSSSCCBCCSCEE
T ss_pred CCCccCCCEecceEE
Confidence 457777666654443
No 324
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=32.98 E-value=8.8 Score=26.22 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=20.7
Q ss_pred ccccccccccccccc-----ccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVV-----ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~-----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.+.|.+|+-.|.... -++=|..|-. + .....||.|+.+
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~------l-P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFED------L-PDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGG------S-CTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhH------C-CCCCcCCCCCCC
Confidence 368999988775421 1222333221 0 123479999875
No 325
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.97 E-value=23 Score=27.23 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=23.2
Q ss_pred ccccccccccccc-----------------ccccccchhhhHHhHHHHhc
Q 002816 822 ILKCSICLERPKE-----------------VVITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 822 ~l~C~~C~~~~~~-----------------~~~~~c~h~~c~~C~~~~~~ 854 (877)
...|++|+..+.. .+.-+-| .+|..|+...+.
T Consensus 33 ~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr~rI~ 81 (89)
T 3j21_d 33 IAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMRKVMK 81 (89)
T ss_dssp CCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHHHHHH
T ss_pred CCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHHHHHH
Confidence 4689999876643 2233579 999999987654
No 326
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=32.92 E-value=23 Score=22.74 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2el6_A 12 PYKCSQCEKSFSGK 25 (46)
T ss_dssp SEECSSSSCEESSH
T ss_pred CeECCCCCcccCCH
Confidence 47898888888654
No 327
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.73 E-value=36 Score=23.31 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 002816 47 NQKLVQKLETQKVEYSALENKFAQLKERQQPY 78 (877)
Q Consensus 47 ~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~ 78 (877)
...|......++.++..|..++.+|.+++..|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777778888888888888888777655
No 328
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.58 E-value=19 Score=23.04 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=10.8
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2en8_A 12 SHTCDECGKNFCYI 25 (46)
T ss_dssp SEECTTTCCEESSH
T ss_pred CeECCCcCcccCCH
Confidence 47899988888754
No 329
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.51 E-value=10 Score=25.92 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred ccccccccccccccc-----ccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVV-----ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~-----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.+.|.+|+-.|.... -++=|..|-. + .....||.|+.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~------l-P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFED------L-PDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTS------S-CTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHH------C-CCCCcCCCCCCc
Confidence 478999988775321 1122333211 0 123479999875
No 330
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.46 E-value=18 Score=23.23 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=10.8
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2en1_A 12 PFKCEECGKRFTQN 25 (46)
T ss_dssp SEEETTTTEEESSH
T ss_pred CeeCCCCCcccCCH
Confidence 47899998888754
No 331
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=32.34 E-value=13 Score=29.53 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=17.5
Q ss_pred ccccccccccccc-ccccc--cchhhh
Q 002816 822 ILKCSICLERPKE-VVITK--CYHLFC 845 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~~--c~h~~c 845 (877)
...|..|...-.+ -+-+. |||++|
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgC 51 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGC 51 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEEC
T ss_pred CCcCcCcCCCCCCceeeecccCCCccc
Confidence 4689999843333 35667 999999
No 332
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.27 E-value=13 Score=27.10 Aligned_cols=35 Identities=23% Similarity=0.640 Sum_probs=26.4
Q ss_pred Cccccccccccccccc-ccccchhhhHHhHHHHhcc
Q 002816 821 EILKCSICLERPKEVV-ITKCYHLFCNPCVQKVTES 855 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~-~~~c~h~~c~~C~~~~~~~ 855 (877)
.-+.|..|...+.... ...-|..||..|......+
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 3478999998887643 3367899999999887653
No 333
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.26 E-value=15 Score=27.06 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=7.0
Q ss_pred ccccccccccc
Q 002816 823 LKCSICLERPK 833 (877)
Q Consensus 823 l~C~~C~~~~~ 833 (877)
..|..|...+.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x4l_A 6 SGCAGCTNPIS 16 (72)
T ss_dssp CSBTTTTBCCC
T ss_pred CCCcCCCcccc
Confidence 45677766665
No 334
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=32.06 E-value=9.5 Score=24.86 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=9.6
Q ss_pred Ccccccccccccccc
Q 002816 821 EILKCSICLERPKEV 835 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~ 835 (877)
..+.|+-|. .|..|
T Consensus 12 D~WkC~~C~-~~N~P 25 (46)
T 2c6a_A 12 DYWKCTSCN-EMNPP 25 (46)
T ss_dssp GCEECTTTC-CEECS
T ss_pred ceEeccccc-ccCCC
Confidence 347888887 46656
No 335
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=32.00 E-value=10 Score=22.48 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 6 RPFVCRICLSAFTT 19 (35)
T ss_dssp SCEECSSSCCEESS
T ss_pred cCeeCCCCCcccCC
Confidence 35679999888865
No 336
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=31.85 E-value=3.4 Score=31.22 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=4.6
Q ss_pred CCCCCCC
Q 002816 859 KCPGCAA 865 (877)
Q Consensus 859 ~Cp~c~~ 865 (877)
+||.|+.
T Consensus 57 kC~~C~S 63 (79)
T 2k2d_A 57 KCKICES 63 (79)
T ss_dssp CCTTTSC
T ss_pred cCcCCCC
Confidence 5777754
No 337
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.85 E-value=34 Score=21.83 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=19.4
Q ss_pred cccccccccccccccccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.+.|++|...|.....+. .|.. .....+++.||+|
T Consensus 12 ~~~C~~C~k~f~~~~~L~-~H~~------~H~~~k~~~C~~~ 46 (46)
T 2em2_A 12 PFKCKECGKAFRQNIHLA-SHLR------IHTGEKPSGPSSG 46 (46)
T ss_dssp SEECSSSCCEESSHHHHH-HHHH------HHCCCCSSCSSCC
T ss_pred CEECCcCCchhCCHHHHH-HHHH------HhCCCCCCCCCCC
Confidence 478988888887543221 2221 1122345678876
No 338
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.77 E-value=41 Score=25.91 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSPN 870 (877)
Q Consensus 858 ~~Cp~c~~~~~~~ 870 (877)
..|+.|+..|...
T Consensus 63 ~~C~~C~k~f~~~ 75 (95)
T 2ej4_A 63 EECPREGKSFKAK 75 (95)
T ss_dssp TTCSSTTCCCSSH
T ss_pred cCCCCCCcccCCH
Confidence 6899999999753
No 339
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.70 E-value=14 Score=27.95 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=13.8
Q ss_pred ccccccccccccc-cccc---ccchhhhH
Q 002816 822 ILKCSICLERPKE-VVIT---KCYHLFCN 846 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~---~c~h~~c~ 846 (877)
...|..|...+.. .++. ..+|.-|+
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF 43 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCF 43 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTC
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccC
Confidence 3578888776642 2222 35665554
No 340
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.62 E-value=18 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
.++.||.|+..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQK 24 (42)
T ss_dssp CSBCCTTTTCCBSSH
T ss_pred CCeeCCCccchhCCH
Confidence 356899999998753
No 341
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.50 E-value=22 Score=22.81 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2yti_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CTTCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCh
Confidence 457899999999753
No 342
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.35 E-value=17 Score=23.31 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ysp_A 12 PYKCEKCGKGYNSK 25 (46)
T ss_dssp SEEETTTTEEESCH
T ss_pred CeECCCCCCccCCH
Confidence 47898888888754
No 343
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.32 E-value=16 Score=27.47 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=13.9
Q ss_pred ccccccccccccccccc---ccchhhhH
Q 002816 822 ILKCSICLERPKEVVIT---KCYHLFCN 846 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~---~c~h~~c~ 846 (877)
...|..|...+...++. ..+|.-|+
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF 42 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC
Confidence 35777777766554333 34555444
No 344
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.17 E-value=1.6e+02 Score=21.90 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002816 593 LAAAEAEIADMRQKLEAF 610 (877)
Q Consensus 593 l~~~~~~l~~l~~~~~~~ 610 (877)
+.....++..|...-+.+
T Consensus 20 ~~q~qaEl~sLrrT~~EL 37 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 333344444444333333
No 345
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=31.01 E-value=10 Score=28.72 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=17.7
Q ss_pred ccccccccccccc-cccccchhhhHHhHHHHhccCCCCCCCCC
Q 002816 823 LKCSICLERPKEV-VITKCYHLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 823 l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
+.|..|...+... ....=|..||..|....+. ..|-.|+
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~---~~c~gcg 74 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG---PKGYGYG 74 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC---CcccccC
Confidence 4566666655432 2334566677777655433 3455554
No 346
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=30.93 E-value=26 Score=24.09 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=23.0
Q ss_pred ccccccccccccccc-----ccccchhhhHHhHHHHhccCCCCCCCCCCC
Q 002816 822 ILKCSICLERPKEVV-----ITKCYHLFCNPCVQKVTESRHRKCPGCAAS 866 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~-----~~~c~h~~c~~C~~~~~~~~~~~Cp~c~~~ 866 (877)
.+.|.+|+-.|.... -++=|..|-. + .....||.|+.+
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~------l-P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKD------I-PDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGG------S-CTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhH------C-CCCCcCcCCCCc
Confidence 478999998886421 2234554432 1 123479999875
No 347
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.89 E-value=7.4 Score=23.73 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elm_A 8 HLYYCSQCHYSSIT 21 (37)
T ss_dssp CEEECSSSSCEEEC
T ss_pred cCeECCCCCcccCC
Confidence 34679999988864
No 348
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=30.74 E-value=12 Score=31.54 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=17.8
Q ss_pred ccccccccccccccccccchhhh
Q 002816 823 LKCSICLERPKEVVITKCYHLFC 845 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~c~h~~c 845 (877)
..|..|...-..-+.+.|||+.|
T Consensus 35 ~~C~~C~~~~~LwlCL~CG~vgC 57 (129)
T 2g45_A 35 WKCSKCDMRENLWLNLTDGSILC 57 (129)
T ss_dssp CCCSSSSCCSSEEEETTTCCEEE
T ss_pred CcCccccCcCceEEeccCCcccc
Confidence 57999987655456778999987
No 349
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.73 E-value=19 Score=22.36 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 9 KPYSCAECKETFSDN 23 (42)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeECCCCCCccCCH
Confidence 456899999988753
No 350
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.69 E-value=25 Score=25.41 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=4.9
Q ss_pred cccccccccc
Q 002816 824 KCSICLERPK 833 (877)
Q Consensus 824 ~C~~C~~~~~ 833 (877)
.|+.|...+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 4555555443
No 351
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.65 E-value=21 Score=26.16 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=5.5
Q ss_pred cccccccccc
Q 002816 824 KCSICLERPK 833 (877)
Q Consensus 824 ~C~~C~~~~~ 833 (877)
.|+.|...+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1wyh_A 7 GCSACGETVM 16 (72)
T ss_dssp BCSSSCCBCC
T ss_pred CCccCCCccc
Confidence 5555555554
No 352
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=30.41 E-value=19 Score=26.89 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=15.4
Q ss_pred ccccchhhhHHhHHHHhccCCCCCCCC
Q 002816 837 ITKCYHLFCNPCVQKVTESRHRKCPGC 863 (877)
Q Consensus 837 ~~~c~h~~c~~C~~~~~~~~~~~Cp~c 863 (877)
.++|..-||..|. ++|..|
T Consensus 19 ~T~C~~CyCKkCc--------~HCq~C 37 (86)
T 1tac_A 19 KTASNRAHAKKSA--------YHSQVA 37 (86)
T ss_dssp TTCSSCSSTTTTT--------TTCCCS
T ss_pred CCCCCCceecchh--------hhhhHH
Confidence 5689999999996 348888
No 353
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.39 E-value=21 Score=22.27 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 10 k~~~C~~C~k~f~~~ 24 (42)
T 2eos_A 10 KPYPCEICGTRFRHL 24 (42)
T ss_dssp CCBCCSSSCCCBSSH
T ss_pred CCEECCCCCCccCCH
Confidence 456899999998753
No 354
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.32 E-value=26 Score=25.46 Aligned_cols=30 Identities=13% Similarity=0.442 Sum_probs=13.2
Q ss_pred ccccccccccccc-cccccchhhhHHhHHHH
Q 002816 823 LKCSICLERPKEV-VITKCYHLFCNPCVQKV 852 (877)
Q Consensus 823 l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~ 852 (877)
+.|..|...+... ....=|..||..|....
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 3455555444321 12233455555555443
No 355
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.31 E-value=22 Score=22.43 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2en7_A 11 KPYVCNECGKAFRSK 25 (44)
T ss_dssp SSSCCTTTCCCCSSH
T ss_pred cCeECCCCCCccCCH
Confidence 456899999998753
No 356
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.26 E-value=20 Score=22.94 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enf_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 456899999998753
No 357
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.26 E-value=23 Score=22.71 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.6
Q ss_pred cccccccccccccc
Q 002816 822 ILKCSICLERPKEV 835 (877)
Q Consensus 822 ~l~C~~C~~~~~~~ 835 (877)
.+.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ep0_A 12 PYKCDVCHKSFRYG 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeeCcccCcccCCh
Confidence 47888888888754
No 358
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=24 Score=25.81 Aligned_cols=10 Identities=20% Similarity=0.477 Sum_probs=5.3
Q ss_pred cccccccccc
Q 002816 824 KCSICLERPK 833 (877)
Q Consensus 824 ~C~~C~~~~~ 833 (877)
.|+.|...+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4k_A 7 GCQECKKTIM 16 (72)
T ss_dssp CBSSSCCCCC
T ss_pred CCccCCCccc
Confidence 4555555444
No 359
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.90 E-value=24 Score=22.62 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoh_A 11 KPYECKECRKTFIQI 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCcCCCCcCchhCCH
Confidence 457899999999753
No 360
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.73 E-value=25 Score=28.08 Aligned_cols=13 Identities=15% Similarity=0.715 Sum_probs=9.4
Q ss_pred ccccccccccccc
Q 002816 822 ILKCSICLERPKE 834 (877)
Q Consensus 822 ~l~C~~C~~~~~~ 834 (877)
.+.|++|...|..
T Consensus 16 ~~~C~~C~~~f~~ 28 (107)
T 1wjp_A 16 VYQCRLCNAKLSS 28 (107)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 4678888777754
No 361
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.65 E-value=23 Score=22.68 Aligned_cols=15 Identities=27% Similarity=0.740 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eq2_A 11 KPYQCNECGKAFSQT 25 (46)
T ss_dssp CSSSCCSSCCCCSSH
T ss_pred CCeECCCCCcccCCH
Confidence 457899999998753
No 362
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=29.44 E-value=5.8 Score=29.80 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=6.6
Q ss_pred cccccccccccc
Q 002816 823 LKCSICLERPKE 834 (877)
Q Consensus 823 l~C~~C~~~~~~ 834 (877)
+.|..|+....+
T Consensus 16 LrC~aCf~~t~~ 27 (79)
T 2con_A 16 LRCHGCFKTTSD 27 (79)
T ss_dssp EECSSSCCEESC
T ss_pred eEecccceECCC
Confidence 556666655443
No 363
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.42 E-value=25 Score=22.53 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eq1_A 11 KPYKCNECGKAFRA 24 (46)
T ss_dssp CCCCCTTTTCCCSS
T ss_pred CCeECCcCChhhCC
Confidence 46789999999865
No 364
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=29.37 E-value=24 Score=22.60 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPND 871 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~~ 871 (877)
+++.||.|++.|....
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2ely_A 11 KPFKCVECGKGFSRRS 26 (46)
T ss_dssp CSBCCSSSCCCBSSTT
T ss_pred CCcccCccCcccCCHH
Confidence 3568999999997654
No 365
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.70 E-value=25 Score=22.43 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ep1_A 11 KPYECSDCGKSFIKK 25 (46)
T ss_dssp CSSCCSSSCCCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 457899999998753
No 366
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=28.58 E-value=5.1 Score=34.40 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.3
Q ss_pred CCCCCCCCCCC
Q 002816 857 HRKCPGCAASF 867 (877)
Q Consensus 857 ~~~Cp~c~~~~ 867 (877)
...||.|+.+-
T Consensus 107 ~~~CP~Cgs~~ 117 (139)
T 3a43_A 107 FLACPKCGSHD 117 (139)
T ss_dssp GCSCSSSSCCC
T ss_pred CCcCccccCCc
Confidence 45799998763
No 367
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.57 E-value=23 Score=22.75 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|++.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 11 KPYECDVCRKAFSHH 25 (46)
T ss_dssp SSCBCTTTCCBCSSS
T ss_pred CCcCCCCcCchhCCH
Confidence 356799999998754
No 368
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.53 E-value=2.2e+02 Score=22.48 Aligned_cols=19 Identities=0% Similarity=0.190 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002816 596 AEAEIADMRQKLEAFKRDM 614 (877)
Q Consensus 596 ~~~~l~~l~~~~~~~~~~~ 614 (877)
+..+|+.|+.+...+...+
T Consensus 17 lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 369
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.42 E-value=23 Score=22.74 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|++.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eon_A 11 KPYKCQVCGKAFRVS 25 (46)
T ss_dssp CSCBCSSSCCBCSSH
T ss_pred cccCCCCCCcccCcH
Confidence 456899999998753
No 370
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.34 E-value=24 Score=22.65 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em6_A 11 KCYKCDVCGKEFSQ 24 (46)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred CCeECCCCCcccCC
Confidence 45789999999875
No 371
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.30 E-value=1.5e+02 Score=20.80 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 002816 501 CETLLASSADQVAEIHKLQAMVQDLTDSNLELKLI 535 (877)
Q Consensus 501 ~~~l~~~i~~~~~ei~~l~~~~~~l~~~~~~l~~~ 535 (877)
+..+...+..+..+...|..++..+..++..|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666665555443
No 372
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.10 E-value=22 Score=23.34 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
.+.||.|+..|..
T Consensus 12 ~~~CPrCn~~f~~ 24 (49)
T 2e72_A 12 RKICPRCNAQFRV 24 (49)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceeCCcccccccc
Confidence 5679999998864
No 373
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=28.09 E-value=16 Score=25.64 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCC
Q 002816 858 RKCPGCAASFSPND 871 (877)
Q Consensus 858 ~~Cp~c~~~~~~~~ 871 (877)
..||.|+.++...+
T Consensus 19 ~~CP~CG~~T~~~h 32 (60)
T 2apo_B 19 EICPKCGEKTVIPK 32 (60)
T ss_dssp SBCSSSCSBCBCCC
T ss_pred ccCcCCCCcCCCCC
Confidence 45888887765444
No 374
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.09 E-value=27 Score=22.35 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emz_A 11 RPFKCNECGKGFGRR 25 (46)
T ss_dssp CSCCCSSSCCCCSSH
T ss_pred CCeECCCCCcccCCH
Confidence 457899999998753
No 375
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.05 E-value=27 Score=22.05 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|++.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (44)
T 2eou_A 11 TTSECQECGKIFRH 24 (44)
T ss_dssp CCCCCTTTCCCCSS
T ss_pred cCeECCCCCcccCC
Confidence 45689999999875
No 376
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.94 E-value=16 Score=28.33 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=25.0
Q ss_pred Ccccccccccccccc-cccccchhhhHHhHHHHhc
Q 002816 821 EILKCSICLERPKEV-VITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~-~~~~c~h~~c~~C~~~~~~ 854 (877)
.-+.|..|...+... ....=|..||..|....+.
T Consensus 50 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred cCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 347899998887653 3346789999999887654
No 377
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.78 E-value=8.9 Score=26.69 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=12.2
Q ss_pred hccCcccccccccccc
Q 002816 818 EYREILKCSICLERPK 833 (877)
Q Consensus 818 ~l~~~l~C~~C~~~~~ 833 (877)
++-..+.||+|+..+.
T Consensus 6 ~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 6 GLLEILACPACHAPLE 21 (56)
T ss_dssp SCTTSCCCSSSCSCEE
T ss_pred HHHhheeCCCCCCcce
Confidence 4566789999998654
No 378
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.71 E-value=14 Score=38.81 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=24.0
Q ss_pred cCcccccccccccccc-----cccccchhhhHHhHHH
Q 002816 820 REILKCSICLERPKEV-----VITKCYHLFCNPCVQK 851 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~-----~~~~c~h~~c~~C~~~ 851 (877)
.....|.+|...+... ....||..||..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 4456899999887532 2346999999999864
No 379
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.62 E-value=27 Score=22.37 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+.+.|+.|++.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2eom_A 11 RGHRCSDCGKFFLQA 25 (46)
T ss_dssp SSCCCSSSCCCCSSH
T ss_pred CCcCCCCCCCeeCCh
Confidence 356899999998753
No 380
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.55 E-value=24 Score=22.63 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yth_A 11 KPFQCEECGKRFTQN 25 (46)
T ss_dssp SSBCCSSSCCCBSSH
T ss_pred cCCCCCCCCcccCCH
Confidence 356899999998653
No 381
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.51 E-value=16 Score=25.58 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=8.9
Q ss_pred ccCccccccccc
Q 002816 819 YREILKCSICLE 830 (877)
Q Consensus 819 l~~~l~C~~C~~ 830 (877)
|...+.||.|..
T Consensus 8 ll~~~~Cp~C~~ 19 (58)
T 1dl6_A 8 ALPRVTCPNHPD 19 (58)
T ss_dssp CCSCCSBTTBSS
T ss_pred ccccccCcCCCC
Confidence 455678999975
No 382
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.38 E-value=22 Score=26.18 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=9.6
Q ss_pred cccccccccccccccc
Q 002816 823 LKCSICLERPKEVVIT 838 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~ 838 (877)
..|+.|...+...++.
T Consensus 6 ~~C~~C~~~I~~~~v~ 21 (73)
T 1wig_A 6 SGCDSCEKYITGRVLE 21 (73)
T ss_dssp CSCSSSCCCCSSCCBC
T ss_pred CCcccCCCEecCeeEE
Confidence 4677777766654433
No 383
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=27.30 E-value=16 Score=33.28 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.7
Q ss_pred CcccccccccccccccccccchhhhHHhHH
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQ 850 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~ 850 (877)
....|++|++.+-.+ |..+|..|..
T Consensus 162 ~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC-----CCcCCccccC
Confidence 446899999988766 9999999974
No 384
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=27.02 E-value=59 Score=18.05 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=9.7
Q ss_pred CCCCCCCCCC--CCCCCCcccc
Q 002816 4 TGEPDRKRRH--FSSISPTAAT 23 (877)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~~~ 23 (877)
.+.|+.+-.| |++..|+.||
T Consensus 3 pgppgprgqpgvmgfpgppgpp 24 (31)
T 4gyx_A 3 PGPPGPRGQPGVMGFPGPPGPP 24 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCccccCCCCCCCC
Confidence 3444444333 6666555444
No 385
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.59 E-value=27 Score=19.67 Aligned_cols=13 Identities=23% Similarity=0.536 Sum_probs=9.7
Q ss_pred CCCCC--CCCCCCCC
Q 002816 857 HRKCP--GCAASFSP 869 (877)
Q Consensus 857 ~~~Cp--~c~~~~~~ 869 (877)
++.|| .|+..|..
T Consensus 2 p~~C~~~~C~k~f~~ 16 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTR 16 (31)
T ss_dssp CCBCCSTTCCCBCSS
T ss_pred CcCCcCCCCCcccCC
Confidence 35687 89988865
No 386
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.56 E-value=26 Score=22.44 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|++.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2en9_A 11 KLFKCNECKKTFTQ 24 (46)
T ss_dssp CCCBCTTTCCBCSS
T ss_pred CCEECCccCcccCC
Confidence 45689999999865
No 387
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.52 E-value=25 Score=22.46 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+.+.|+.|++.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 11 NPFICSECGKVFTHK 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCEECCccCcccCCH
Confidence 356899999998753
No 388
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=26.46 E-value=14 Score=22.69 Aligned_cols=13 Identities=23% Similarity=0.582 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSP 869 (877)
Q Consensus 857 ~~~Cp~c~~~~~~ 869 (877)
++.|+.|+..|..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 4578889888864
No 389
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=25.95 E-value=17 Score=26.31 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFS 868 (877)
Q Consensus 857 ~~~Cp~c~~~~~ 868 (877)
...||+|+++|.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 347999999985
No 390
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.85 E-value=87 Score=16.98 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=15.9
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHH
Q 002816 40 TAVLQFQNQKLVQKLETQKVEYSA 63 (877)
Q Consensus 40 ~~~l~~~~~~l~~~l~~~~~~~~~ 63 (877)
|+.|.|.+..|.+.+..+...+..
T Consensus 2 idalefendaleqkiaalkqkias 25 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHH
Confidence 456777777777776666555544
No 391
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.71 E-value=2.4e+02 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=14.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002816 41 AVLQFQNQKLVQKLETQKVEYSALENKFAQLKERQQ 76 (877)
Q Consensus 41 ~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~ 76 (877)
..++.+..+....+...-..+-+...++..|..+=+
T Consensus 33 ~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse 68 (96)
T 1sfc_A 33 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334333333333333333333333344444444433
No 392
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.60 E-value=25 Score=26.13 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=7.7
Q ss_pred ccccccccccc
Q 002816 823 LKCSICLERPK 833 (877)
Q Consensus 823 l~C~~C~~~~~ 833 (877)
..|+.|...+.
T Consensus 12 ~~C~~C~~~I~ 22 (77)
T 1g47_A 12 ATCERCKGGFA 22 (77)
T ss_dssp CBCSSSCCBCC
T ss_pred CCchhcCCccC
Confidence 56777777664
No 393
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=25.57 E-value=33 Score=21.89 Aligned_cols=15 Identities=33% Similarity=0.736 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2em0_A 11 KTWKCRECDMCFSQA 25 (46)
T ss_dssp CCCCCSSSCCCCSSH
T ss_pred cCeECCCCCcccCCH
Confidence 457899999998753
No 394
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.43 E-value=31 Score=21.95 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 11 KPYKCNECGKAFSQT 25 (46)
T ss_dssp CTTCCTTTCCCCSSH
T ss_pred cCcCCCCCCCccCCH
Confidence 457899999998753
No 395
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.39 E-value=29 Score=21.80 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (43)
T 2yrm_A 9 GAFFCNECDCRFSE 22 (43)
T ss_dssp CCBCCSSSCCCBSS
T ss_pred CCEECCCCCCeeCC
Confidence 45689999999865
No 396
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.18 E-value=5.2 Score=31.44 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=7.1
Q ss_pred ccccccccccc
Q 002816 822 ILKCSICLERP 832 (877)
Q Consensus 822 ~l~C~~C~~~~ 832 (877)
...|.||...-
T Consensus 16 ~~~C~vC~~~~ 26 (92)
T 2e6r_A 16 SYICQVCSRGD 26 (92)
T ss_dssp CCCCSSSCCSG
T ss_pred CCCCccCCCcC
Confidence 35688887654
No 397
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.93 E-value=2.1e+02 Score=21.12 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002816 677 QDALLMDKHMMESEIQQA 694 (877)
Q Consensus 677 ~~~~~~e~~~l~~~~~~~ 694 (877)
+..+..-+-.++.+|..+
T Consensus 35 Yq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 35 YQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444444433
No 398
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.81 E-value=17 Score=23.00 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQR 25 (44)
T ss_dssp CSEECSSSSCEESSS
T ss_pred CCeECCCCCchhCCH
Confidence 356799999988754
No 399
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=24.61 E-value=2.8e+02 Score=22.44 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002816 47 NQKLVQKLETQKVEYSALENKFAQLKERQQ 76 (877)
Q Consensus 47 ~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~ 76 (877)
...+-.+|+....++.++-.++.+|..+..
T Consensus 100 L~~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 100 LTALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777776665443
No 400
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.41 E-value=24 Score=26.62 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=10.9
Q ss_pred cccccccccccccccc
Q 002816 823 LKCSICLERPKEVVIT 838 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~ 838 (877)
..|+.|...+...++.
T Consensus 16 ~~C~~C~~~I~~~~v~ 31 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVS 31 (81)
T ss_dssp CBCTTTCCBCCSCCEE
T ss_pred CcCccccCEeccceEE
Confidence 3788888877654443
No 401
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.11 E-value=26 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=15.5
Q ss_pred ccccccccccccc--ccc---ccchhhhHHh
Q 002816 823 LKCSICLERPKEV--VIT---KCYHLFCNPC 848 (877)
Q Consensus 823 l~C~~C~~~~~~~--~~~---~c~h~~c~~C 848 (877)
..|..|...+... ++. ..+|.-|..|
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C 42 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVC 42 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcc
Confidence 5788898877632 322 3566655533
No 402
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.08 E-value=9.4 Score=20.93 Aligned_cols=9 Identities=33% Similarity=1.058 Sum_probs=4.5
Q ss_pred CCCCCCCCC
Q 002816 859 KCPGCAASF 867 (877)
Q Consensus 859 ~Cp~c~~~~ 867 (877)
.||+|....
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 355555443
No 403
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.07 E-value=30 Score=22.05 Aligned_cols=15 Identities=40% Similarity=0.804 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|++.|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 11 KPHECRECGKSFSFN 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeeCCCCCchhCCH
Confidence 456899999998753
No 404
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.95 E-value=43 Score=25.05 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=6.0
Q ss_pred ccccccccccc
Q 002816 824 KCSICLERPKE 834 (877)
Q Consensus 824 ~C~~C~~~~~~ 834 (877)
.|+.|...+..
T Consensus 17 ~C~~C~~~I~~ 27 (80)
T 1x3h_A 17 KCGGCNRPVLE 27 (80)
T ss_dssp BCTTTCCBCCS
T ss_pred ccccCCCeecc
Confidence 55566555544
No 405
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=23.93 E-value=14 Score=31.03 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=16.5
Q ss_pred ccccccccc--------------cccccccccchhhh
Q 002816 823 LKCSICLER--------------PKEVVITKCYHLFC 845 (877)
Q Consensus 823 l~C~~C~~~--------------~~~~~~~~c~h~~c 845 (877)
..|+.|... ...-+-+.|||+.|
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgC 65 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGC 65 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEE
T ss_pred CcCccccccccccccccccccccccceeeeeCCcccc
Confidence 689999863 12234678999998
No 406
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.92 E-value=25 Score=23.86 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=21.6
Q ss_pred cccccccccccc-cccccc-------hhhhHHhHHHHhccCCCCCCCCC
Q 002816 824 KCSICLERPKEV-VITKCY-------HLFCNPCVQKVTESRHRKCPGCA 864 (877)
Q Consensus 824 ~C~~C~~~~~~~-~~~~c~-------h~~c~~C~~~~~~~~~~~Cp~c~ 864 (877)
.|.+|..++.+. ..+.|- |..|-.=...........||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 577888877532 223332 55554333222222567899984
No 407
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.85 E-value=12 Score=27.85 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCC
Q 002816 857 HRKCPGCAASFSPNDV 872 (877)
Q Consensus 857 ~~~Cp~c~~~~~~~~~ 872 (877)
+..||.|+..|...++
T Consensus 43 ~~~C~~C~~~~~~~~l 58 (75)
T 2d9k_A 43 TELCGNCGRNVLVKDL 58 (75)
T ss_dssp EEECSSSCCEEETTGG
T ss_pred ceEcccCCCcCcHHHH
Confidence 4569999998866554
No 408
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.74 E-value=31 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|++.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (47)
T 2epx_A 11 KPYECIECGKAFIQN 25 (47)
T ss_dssp CSBCCSSSCCCBSSH
T ss_pred CCEECCccCchhCCh
Confidence 356899999998753
No 409
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=23.72 E-value=52 Score=28.36 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred ccccccccccccccc-------------c-----ccchhh-hHHhHHHHhcc----CCCCCCC--CCCCCCCC
Q 002816 823 LKCSICLERPKEVVI-------------T-----KCYHLF-CNPCVQKVTES----RHRKCPG--CAASFSPN 870 (877)
Q Consensus 823 l~C~~C~~~~~~~~~-------------~-----~c~h~~-c~~C~~~~~~~----~~~~Cp~--c~~~~~~~ 870 (877)
+.|++|...|..... + .||-.| -..-+...... ..+.||+ |+..|...
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~ 135 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS 135 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSH
T ss_pred cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCH
Confidence 579999887754211 1 155555 22333333322 2468997 99988653
No 410
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.70 E-value=34 Score=19.39 Aligned_cols=14 Identities=36% Similarity=0.843 Sum_probs=10.4
Q ss_pred CCCCC--CCCCCCCCC
Q 002816 857 HRKCP--GCAASFSPN 870 (877)
Q Consensus 857 ~~~Cp--~c~~~~~~~ 870 (877)
++.|+ .|+..|...
T Consensus 3 ~~~C~~~~C~k~f~~~ 18 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRN 18 (32)
T ss_dssp SBCCCCTTCCCCBSSS
T ss_pred CCcCcCCCCCCccCCH
Confidence 45688 899888654
No 411
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.68 E-value=18 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (44)
T 2epv_A 11 KPYECNECGKAFIW 24 (44)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCCcccCc
Confidence 35679999988865
No 412
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.66 E-value=15 Score=21.29 Aligned_cols=16 Identities=13% Similarity=0.301 Sum_probs=11.2
Q ss_pred cccccccccccccccc
Q 002816 822 ILKCSICLERPKEVVI 837 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~ 837 (877)
.+.|++|+..+.++-+
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 3678888887766543
No 413
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.63 E-value=30 Score=22.06 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.||.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred cCeECCCCCCeeCCH
Confidence 456899999998753
No 414
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.53 E-value=3.2e+02 Score=28.94 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 413 SKIADLGIEIQKQIDEKNRIEMRLEE 438 (877)
Q Consensus 413 ~~~~~le~~l~~~~~~~~~l~~~l~~ 438 (877)
.+...+..++..+..++..++.++..
T Consensus 78 ~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 415
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=23.50 E-value=19 Score=22.48 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|++.|..
T Consensus 10 ~~~~C~~C~k~f~~ 23 (42)
T 2epc_A 10 TPYLCGQCGKSFTQ 23 (42)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCcccCC
Confidence 35679999988865
No 416
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.49 E-value=19 Score=23.10 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|+..|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCS 25 (46)
T ss_dssp CCEECSSSCCEESSS
T ss_pred CCEECcCCCCcCCCH
Confidence 356799999888653
No 417
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.38 E-value=28 Score=26.22 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=8.9
Q ss_pred ccccccccccccccc
Q 002816 824 KCSICLERPKEVVIT 838 (877)
Q Consensus 824 ~C~~C~~~~~~~~~~ 838 (877)
.|..|...+...++.
T Consensus 17 ~C~~C~~~I~~~~~~ 31 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMV 31 (81)
T ss_dssp BCTTTCCBCCSCCBC
T ss_pred cCccCCCCcCceEEE
Confidence 577777666554433
No 418
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=23.26 E-value=36 Score=30.77 Aligned_cols=14 Identities=50% Similarity=1.032 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
.++.||.|+..|..
T Consensus 160 ~~~~C~~C~~~f~~ 173 (190)
T 2i13_A 160 KPYKCPECGKSFSR 173 (190)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCeECCCCCCccCC
Confidence 45679999988865
No 419
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.25 E-value=29 Score=26.09 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=23.6
Q ss_pred cccccccccccccccccccchhhhHHhHHHH
Q 002816 822 ILKCSICLERPKEVVITKCYHLFCNPCVQKV 852 (877)
Q Consensus 822 ~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~ 852 (877)
-+.|..|...+.......=|..||..|....
T Consensus 41 CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 41 HFNCANCGKELTADARELKGELYCLPCHDKM 71 (79)
T ss_dssp TSBCSSSCCBCCTTCEEETTEEECHHHHHTT
T ss_pred CCEeCCCCCccCCCCEeECCEEeCHHHHHHh
Confidence 3789999888876544567889999998654
No 420
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.22 E-value=34 Score=21.86 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|++.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 11 KPYGCSECGKAFSSK 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CCcCCCccChhhCCh
Confidence 456899999998753
No 421
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.22 E-value=30 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=24.8
Q ss_pred ccccccccccccc-ccccccchhhhHHhHHHHhc
Q 002816 822 ILKCSICLERPKE-VVITKCYHLFCNPCVQKVTE 854 (877)
Q Consensus 822 ~l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~ 854 (877)
-+.|..|...+.. .....=|..||..|....+.
T Consensus 51 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 51 CFVCADCNLNLKQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp TCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS
T ss_pred CCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 4688999888765 34456788999999877655
No 422
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.10 E-value=32 Score=21.94 Aligned_cols=15 Identities=20% Similarity=0.700 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
+++.|+.|++.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2elz_A 11 KPYKCEDCGKGYNRR 25 (46)
T ss_dssp SSCBCSSSCCBCSSH
T ss_pred CCeeCcccCchhCCH
Confidence 456899999998653
No 423
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=23.03 E-value=36 Score=27.68 Aligned_cols=14 Identities=29% Similarity=0.861 Sum_probs=10.3
Q ss_pred CCCCC--CCCCCCCCC
Q 002816 856 RHRKC--PGCAASFSP 869 (877)
Q Consensus 856 ~~~~C--p~c~~~~~~ 869 (877)
.++.| |.|+..|..
T Consensus 93 ~~~~C~~~~C~~~f~~ 108 (119)
T 2jp9_A 93 KPFSCRWPSCQKKFAR 108 (119)
T ss_dssp CCEECCSTTCCCEESS
T ss_pred CCeeCCCCCCccccCC
Confidence 35678 889888864
No 424
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.58 E-value=2.5e+02 Score=21.22 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q 002816 627 EIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKA 705 (877)
Q Consensus 627 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~ 705 (877)
++..+......++..+.+++..... .+..++..+..+..++..+...+.....+...+-+-.-.+..++..+...+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAV---EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 425
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.57 E-value=6.1e+02 Score=25.67 Aligned_cols=131 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHhHHH
Q 002816 655 QITERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQ--AQRLAEDRSQNSAN 732 (877)
Q Consensus 655 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~--~~~l~~el~~~~~~ 732 (877)
.+.++.........+...+-..+.....++......+..+...+.-+...+...+...+..... .+....++..+...
T Consensus 127 ~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n 206 (373)
T 3hhm_B 127 KLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHN 206 (373)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 733 LENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRL 785 (877)
Q Consensus 733 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~ 785 (877)
.+.+...+.++......|...+..-......+..++..+.-++..+....+.+
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
No 426
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=20 Score=22.21 Aligned_cols=14 Identities=36% Similarity=0.786 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (41)
T 2ept_A 9 RVYECQECGKSFRQ 22 (41)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCCcCC
No 427
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.42 E-value=83 Score=22.42 Aligned_cols=43 Identities=26% Similarity=0.515 Sum_probs=0.0
Q ss_pred cccc--cccccccccccc-cchhhhHHhHHHHhccCCCCCCCCCCCCCCC
Q 002816 824 KCSI--CLERPKEVVITK-CYHLFCNPCVQKVTESRHRKCPGCAASFSPN 870 (877)
Q Consensus 824 ~C~~--C~~~~~~~~~~~-c~h~~c~~C~~~~~~~~~~~Cp~c~~~~~~~ 870 (877)
.|+. |...-..|+.-. |+..||. ..++...+. ||.=..++...
T Consensus 14 ~Cs~~~Ck~~~ll~f~C~~C~~~FC~---~HR~~e~H~-C~~~~~~~~~~ 59 (63)
T 1x4v_A 14 KCERAGCRQREMMKLTCERCSRNFCI---KHRHPLDHD-CSGEGHPTSSG 59 (63)
T ss_dssp CCCSTTCCCCCSSCCBCSSSCCBCCH---HHHSTTSSC-CCSTTSCCCCC
T ss_pred CCCccCCCCCCccceECCCCCcccCc---ccCCccCCc-CCCCCCccccc
No 428
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.39 E-value=34 Score=21.80 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|++.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2epz_A 11 KPFDCIDCGKAFSD 24 (46)
T ss_dssp CSBCCTTTCCCBSS
T ss_pred CCeECCCCCceeCC
No 429
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.33 E-value=20 Score=22.70 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2eoj_A 11 NPYECCECGKVFSR 24 (44)
T ss_dssp CSCEETTTTEECSS
T ss_pred cCeeCCCCCCccCC
No 430
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=22.31 E-value=20 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+.+.||.|+..|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (42)
T 2el5_A 9 NPYECSECGKAFNR 22 (42)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCccCCCcChhhCC
No 431
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=22.25 E-value=19 Score=23.60 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+.+.|+.|++.|..
T Consensus 6 kp~~C~~C~k~F~~ 19 (48)
T 3iuf_A 6 KPYACDICGKRYKN 19 (48)
T ss_dssp SCEECTTTCCEESS
T ss_pred cCEECCCcCcccCC
No 432
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.20 E-value=2.5e+02 Score=20.99 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002816 588 ISQQRLAAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIGQSYDDMQ 646 (877)
Q Consensus 588 ~~~~~l~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~~~~~~~~ 646 (877)
+++..+..--.--..+..++.........+...+.+.+.....+..++..+...+..++
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 433
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.15 E-value=18 Score=25.64 Aligned_cols=46 Identities=15% Similarity=0.448 Sum_probs=0.0
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCC---CCCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHR---KCPGCAAS 866 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~---~Cp~c~~~ 866 (877)
+...|.+|...-.-..--.|...|-..|+...+...+. .||.|...
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
No 434
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.01 E-value=1.9e+02 Score=19.55 Aligned_cols=42 Identities=14% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002816 597 EAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETI 638 (877)
Q Consensus 597 ~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l 638 (877)
+..+..++.++..+...-..|...+.....++..+..+++.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 435
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.95 E-value=7e+02 Score=26.10 Aligned_cols=102 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHH
Q 002816 657 TERDDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQ-LRFCLDQAQRLAEDRSQNSANLEN 735 (877)
Q Consensus 657 ~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~-~~~~~~~~~~l~~el~~~~~~~~~ 735 (877)
..++..+...+.++++.......+...-+..-.++..-+..+......+...... .......+.....++..+...+..
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~Ae 84 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLAD 84 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002816 736 TQKRLSDVRKSSVQVRGSLEESQ 758 (877)
Q Consensus 736 ~~~~~~~l~~~~~~l~~~l~~~~ 758 (877)
...++...+..+......+..++
T Consensus 85 Y~~kl~aYe~~~~~~~k~lae~e 107 (497)
T 3iox_A 85 YPVKLKAYEDEQTSIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 436
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.87 E-value=2.4e+02 Score=20.59 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002816 594 AAAEAEIADMRQKLEAFKRDMVSLSDALKSKNEEIEAYLSEIETIG 639 (877)
Q Consensus 594 ~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~e~~~l~ 639 (877)
..-+..|.+|+..+..+......+......+...+..+..++..+.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 437
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=21.81 E-value=21 Score=21.03 Aligned_cols=10 Identities=40% Similarity=1.182 Sum_probs=0.0
Q ss_pred ccchhhhHHh
Q 002816 839 KCYHLFCNPC 848 (877)
Q Consensus 839 ~c~h~~c~~C 848 (877)
.|-|++|-.|
T Consensus 11 scehtmcgyc 20 (40)
T 1erd_A 11 SCEHTMCGYC 20 (40)
T ss_dssp HTCGGGGGGS
T ss_pred hccccccccc
No 438
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.80 E-value=43 Score=25.14 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=0.0
Q ss_pred ccccccccccccccccc--cchhhhHHhHHHHhccCCCCC
Q 002816 823 LKCSICLERPKEVVITK--CYHLFCNPCVQKVTESRHRKC 860 (877)
Q Consensus 823 l~C~~C~~~~~~~~~~~--c~h~~c~~C~~~~~~~~~~~C 860 (877)
+.|..|...+....... =|..||..|....+. ..|
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~---~~C 78 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA---SGP 78 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT---SSS
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHHHhc---CcC
No 439
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.72 E-value=1.2e+02 Score=17.12 Aligned_cols=29 Identities=24% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 002816 506 ASSADQVAEIHKLQAMVQDLTDSNLELKL 534 (877)
Q Consensus 506 ~~i~~~~~ei~~l~~~~~~l~~~~~~l~~ 534 (877)
+.++.++.+|..|+.++..+.-++..++.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 440
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.64 E-value=3.6e+02 Score=28.35 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002816 361 NQLEKSKSEVFKYQALFEKLQVEKDNLAWRETELNMKIDLVDVFRRSSAVTDSKIADLGIEIQKQIDEKNRI 432 (877)
Q Consensus 361 ~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~l 432 (877)
+.+-.+......+..+++.++.+...+.+.+..+...-+....+......+...+..++..+..+..++..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 441
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.63 E-value=3.1e+02 Score=21.85 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 725 DRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQ 772 (877)
Q Consensus 725 el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~ 772 (877)
.+..++.++...+..+.++..++..++..+..++.+-.-.-.++.+++
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.20 E-value=17 Score=27.16 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=0.0
Q ss_pred cCcccccccccccccccccccc------hhhhHHhHHHHh-----ccCCCCCCCCCCCCCCC
Q 002816 820 REILKCSICLERPKEVVITKCY------HLFCNPCVQKVT-----ESRHRKCPGCAASFSPN 870 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c~------h~~c~~C~~~~~-----~~~~~~Cp~c~~~~~~~ 870 (877)
...+.| +|...+....++.|. |..|-.-..... ....+.||.|.....+.
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
No 443
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.19 E-value=2.1e+02 Score=22.17 Aligned_cols=73 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002816 595 AAEAEIADMRQKLEAFKRDMVSLSDALK-SKNEEIEAYLSEIETIGQSYDDMQTQNQQLLQQITERDDYNIKLVLEG 670 (877)
Q Consensus 595 ~~~~~l~~l~~~~~~~~~~~~~l~~~l~-~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 670 (877)
++..-++.++.+++.+..+...+...-. +.+..+..-..++..+...+-+++..-..+... ++++|..|+.++
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~---YEeEI~rLr~eL 84 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDA---YEEEIKHLKLGL 84 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
No 444
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.12 E-value=21 Score=22.24 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2en2_A 10 KPYKCETCGARFVQ 23 (42)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCEeCCCcChhhCC
No 445
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.10 E-value=22 Score=22.79 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2yts_A 11 KPYICNECGKSFIQ 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCEECCCCChhhCC
No 446
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=22 Score=22.75 Aligned_cols=14 Identities=36% Similarity=0.926 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+.+.|+.|++.|..
T Consensus 11 ~~~~C~~C~k~F~~ 24 (46)
T 2emi_A 11 RHYECSECGKAFIQ 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCCCCCCCCcccCC
No 447
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.97 E-value=42 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=0.0
Q ss_pred cccccccccccc-ccccccchhhhHHhHHHHhccC
Q 002816 823 LKCSICLERPKE-VVITKCYHLFCNPCVQKVTESR 856 (877)
Q Consensus 823 l~C~~C~~~~~~-~~~~~c~h~~c~~C~~~~~~~~ 856 (877)
+.|..|...+.. .....=|.+||..|....+.++
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 76 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASG 76 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCS
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCC
No 448
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=23 Score=22.69 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSPN 870 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~~ 870 (877)
.++.|+.|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2en3_A 11 KPFQCKECGMNFSWS 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCcccChhhCCH
No 449
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.74 E-value=4.3e+02 Score=23.19 Aligned_cols=132 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH---------------
Q 002816 660 DDYNIKLVLEGVRARQLQDALLMDKHMMESEIQQANASLNFFDMKAARIENQLRFCLDQAQRLAE--------------- 724 (877)
Q Consensus 660 ~~~~~~l~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~--------------- 724 (877)
...+..+...+......+.....+.+.+-........++.--...+....+.+.....++...+.
T Consensus 9 ~~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~ 88 (170)
T 3l4q_C 9 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNE 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCH
Q ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 725 -DRSQNSANLENTQKRLSDVRKSSVQVRGSLEESQSKVYKSRLTLMELQIELVKERFAKKRLEEDLEM 791 (877)
Q Consensus 725 -el~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~el~~ 791 (877)
++..+....+.+...+..+......|...+.........+...+..+.-++..+....+.+-.-+..
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~ 156 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQ 156 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
No 450
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.70 E-value=23 Score=22.73 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|++.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2yto_A 11 KPYKCSDCGKAFTR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCEECcccCCccCC
No 451
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=20.67 E-value=23 Score=22.75 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emj_A 11 KPFECAECGKSFSI 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCEECCCCCcccCC
No 452
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.64 E-value=45 Score=24.02 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|++.|..
T Consensus 12 kpy~C~~CgK~F~~ 25 (66)
T 2epp_A 12 GILPCGLCGKVFTD 25 (66)
T ss_dssp CCCCCTTTCCCCSC
T ss_pred cCcCCCCCCCccCC
No 453
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.63 E-value=3.1e+02 Score=21.55 Aligned_cols=57 Identities=14% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002816 598 AEIADMRQKLEAFKRDMVSLSDALKSKNEEIE------------AYLSEIETIGQSYDDMQTQNQQLLQ 654 (877)
Q Consensus 598 ~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~------------~l~~e~~~l~~~~~~~~~~~~~~~~ 654 (877)
..+++|+.++...+.++......+.+.+...+ .-...+..++..+.+++.+++....
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 454
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.56 E-value=23 Score=22.68 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eow_A 11 KPYKCNECGKAFRA 24 (46)
T ss_dssp CCEECTTSCCEESS
T ss_pred CCeeccccCChhcC
No 455
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=20.56 E-value=43 Score=24.06 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred Ccccccc--cccccccccccccchhhhHHhHHHHhccCCCCCCC--CCCCCCC
Q 002816 821 EILKCSI--CLERPKEVVITKCYHLFCNPCVQKVTESRHRKCPG--CAASFSP 869 (877)
Q Consensus 821 ~~l~C~~--C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~~Cp~--c~~~~~~ 869 (877)
..+.|++ |...|. ....-..-+......+++.||+ |+..|..
T Consensus 16 ~~~~C~~~~C~k~f~-------~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~ 61 (72)
T 2epa_A 16 RSHICSHPGCGKTYF-------KSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61 (72)
T ss_dssp CCEECSSTTTCCEES-------SHHHHHHHHHHHSSSCSEECCCTTCCCEESS
T ss_pred CceeCCCCCCccccC-------CHHHHHHHHHhcCCCCCccCCCCCCCcccCC
No 456
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.46 E-value=20 Score=34.67 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=0.0
Q ss_pred ccccccccccccccccchhhhHHh
Q 002816 825 CSICLERPKEVVITKCYHLFCNPC 848 (877)
Q Consensus 825 C~~C~~~~~~~~~~~c~h~~c~~C 848 (877)
||+|+.. ..-.+..=||.+|+.|
T Consensus 17 CP~Cg~~-d~~~~~~dg~~~C~~C 39 (255)
T 1nui_A 17 CDNCGSS-DGNSLFSDGHTFCYVC 39 (255)
T ss_dssp CSSSCCS-SCEEEETTSCEEETTT
T ss_pred CCCCCCC-CCceEeCCCCeecccC
No 457
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.37 E-value=30 Score=24.47 Aligned_cols=45 Identities=18% Similarity=0.502 Sum_probs=0.0
Q ss_pred CcccccccccccccccccccchhhhHHhHHHHhccCCC---CCCCCCC
Q 002816 821 EILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHR---KCPGCAA 865 (877)
Q Consensus 821 ~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~---~Cp~c~~ 865 (877)
....|.+|...-.-..--.|...|-..|+...+...+. .||.|..
T Consensus 10 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
No 458
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=23 Score=22.60 Aligned_cols=14 Identities=21% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.|+.|+..|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 11 KPYRCGECGKAFAQ 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
No 459
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.29 E-value=22 Score=22.44 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
+++.||.|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2emb_A 11 KRYECSKCQATFNL 24 (44)
T ss_dssp SSEECTTTCCEESC
T ss_pred CCeECCCCCCccCC
No 460
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=20.09 E-value=23 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q 002816 856 RHRKCPGCAASFSP 869 (877)
Q Consensus 856 ~~~~Cp~c~~~~~~ 869 (877)
..+.|+.|+..|..
T Consensus 23 k~~~C~~C~k~f~~ 36 (54)
T 1yui_A 23 QPATCPICYAVIRQ 36 (54)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCccCCCCCcccCC
No 461
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.01 E-value=32 Score=26.49 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred cCcccccccccccccccccccchhhhHHhHHHHhccCCC---CCCCCCCCCCCCC
Q 002816 820 REILKCSICLERPKEVVITKCYHLFCNPCVQKVTESRHR---KCPGCAASFSPND 871 (877)
Q Consensus 820 ~~~l~C~~C~~~~~~~~~~~c~h~~c~~C~~~~~~~~~~---~Cp~c~~~~~~~~ 871 (877)
.+...|.+|+..-.-..--.|.-.|-..|+...+...+. .||.|...-..+.
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke 77 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 77 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccch
Done!