Query 002817
Match_columns 876
No_of_seqs 521 out of 3540
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 11:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 4E-143 8E-148 1273.4 85.1 821 40-866 12-834 (1228)
2 KOG0058 Peptide exporter, ABC 100.0 7E-122 1E-126 1037.8 67.3 574 42-623 134-707 (716)
3 KOG0055 Multidrug/pheromone ex 100.0 6E-118 1E-122 1058.1 70.5 579 39-621 648-1226(1228)
4 KOG0054 Multidrug resistance-a 100.0 9E-117 2E-121 1073.2 75.7 782 39-871 187-990 (1381)
5 PTZ00265 multidrug resistance 100.0 5E-107 1E-111 1033.6 103.7 809 39-859 43-987 (1466)
6 COG2274 SunT ABC-type bacterio 100.0 8E-103 2E-107 920.6 69.6 566 42-620 141-708 (709)
7 PLN03130 ABC transporter C fam 100.0 1.3E-99 3E-104 974.3 97.0 686 126-849 366-1062(1622)
8 PLN03232 ABC transporter C fam 100.0 1E-99 2E-104 976.2 94.9 683 126-848 366-1058(1495)
9 PRK11174 cysteine/glutathione 100.0 5.9E-97 1E-101 882.8 75.3 567 43-621 10-585 (588)
10 PTZ00265 multidrug resistance 100.0 1E-96 2E-101 939.2 76.3 571 42-620 812-1465(1466)
11 COG1132 MdlB ABC-type multidru 100.0 8.4E-96 2E-100 868.1 75.1 551 57-621 15-565 (567)
12 TIGR00958 3a01208 Conjugate Tr 100.0 2.8E-94 6E-99 872.2 74.6 565 41-617 147-711 (711)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.4E-93 7.3E-98 867.2 72.6 602 2-617 101-709 (710)
14 TIGR00957 MRP_assoc_pro multi 100.0 3.4E-91 7.3E-96 898.5 95.0 789 40-870 304-1136(1522)
15 TIGR01193 bacteriocin_ABC ABC- 100.0 3.7E-93 8E-98 865.9 72.7 565 41-618 142-707 (708)
16 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.1E-92 4.5E-97 856.5 77.1 545 61-620 141-685 (686)
17 TIGR03375 type_I_sec_LssB type 100.0 2.8E-92 6.1E-97 856.4 71.4 556 42-608 134-689 (694)
18 KOG0056 Heavy metal exporter H 100.0 2.3E-95 5E-100 774.6 38.7 546 67-624 226-778 (790)
19 PRK11160 cysteine/glutathione 100.0 4.5E-91 9.7E-96 826.3 75.5 565 45-618 6-572 (574)
20 COG4988 CydD ABC-type transpor 100.0 4.7E-90 1E-94 766.5 70.7 551 62-622 6-557 (559)
21 PRK11176 lipid transporter ATP 100.0 1.2E-89 2.5E-94 819.5 75.9 564 45-620 15-579 (582)
22 TIGR01846 type_I_sec_HlyB type 100.0 8.1E-90 1.8E-94 834.2 74.0 567 42-620 126-692 (694)
23 TIGR01271 CFTR_protein cystic 100.0 8.6E-88 1.9E-92 864.3 92.3 772 40-856 67-1041(1490)
24 KOG0057 Mitochondrial Fe/S clu 100.0 3.5E-90 7.6E-95 753.9 59.3 547 66-621 40-587 (591)
25 PRK10790 putative multidrug tr 100.0 1.8E-88 3.9E-93 809.9 77.0 566 43-622 11-577 (592)
26 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-87 2.5E-92 801.2 75.5 553 57-620 15-568 (571)
27 TIGR02868 CydC thiol reductant 100.0 6.1E-88 1.3E-92 795.3 69.1 524 46-579 4-529 (529)
28 PTZ00243 ABC transporter; Prov 100.0 1.1E-85 2.3E-90 844.9 95.7 775 41-850 232-1108(1560)
29 PRK13657 cyclic beta-1,2-gluca 100.0 6.6E-87 1.4E-91 795.3 77.2 565 43-621 7-571 (588)
30 PRK10789 putative multidrug tr 100.0 6.4E-87 1.4E-91 790.7 73.2 539 74-622 13-552 (569)
31 TIGR01192 chvA glucan exporter 100.0 2.2E-86 4.7E-91 787.3 76.6 565 43-621 7-571 (585)
32 TIGR02204 MsbA_rel ABC transpo 100.0 3.7E-86 8E-91 788.7 75.6 555 59-620 21-575 (576)
33 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-85 2.9E-90 846.7 74.0 508 105-619 1009-1519(1522)
34 TIGR02857 CydD thiol reductant 100.0 8E-85 1.7E-89 768.7 70.7 524 59-591 6-529 (529)
35 COG5265 ATM1 ABC-type transpor 100.0 1.7E-87 3.7E-92 709.9 40.7 490 124-618 5-496 (497)
36 PLN03130 ABC transporter C fam 100.0 1.1E-84 2.3E-89 836.5 74.3 509 103-621 955-1475(1622)
37 COG4987 CydC ABC-type transpor 100.0 3.9E-84 8.5E-89 706.2 65.3 555 54-618 14-571 (573)
38 TIGR01842 type_I_sec_PrtD type 100.0 5E-83 1.1E-87 754.6 72.5 527 65-608 15-543 (544)
39 PTZ00243 ABC transporter; Prov 100.0 2.9E-83 6.3E-88 822.5 73.6 513 106-621 1003-1547(1560)
40 PLN03232 ABC transporter C fam 100.0 2E-83 4.4E-88 825.4 71.2 510 103-621 952-1472(1495)
41 TIGR01271 CFTR_protein cystic 100.0 3.2E-78 7E-83 775.8 74.6 501 112-622 936-1454(1490)
42 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.3E-78 5E-83 714.9 66.7 534 42-599 4-551 (555)
43 KOG0054 Multidrug resistance-a 100.0 3.2E-78 6.9E-83 736.0 61.9 510 102-620 859-1375(1381)
44 COG4618 ArpD ABC-type protease 100.0 9.1E-75 2E-79 626.4 51.1 520 73-608 40-561 (580)
45 PRK10522 multidrug transporter 100.0 3.8E-72 8.2E-77 661.9 66.8 471 115-606 62-538 (547)
46 TIGR00954 3a01203 Peroxysomal 100.0 5E-68 1.1E-72 635.2 62.8 530 43-593 79-653 (659)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.1E-54 1.1E-58 460.2 27.1 238 380-621 1-238 (275)
48 PRK14257 phosphate ABC transpo 100.0 2.4E-52 5.1E-57 458.7 29.0 223 378-608 77-314 (329)
49 COG1126 GlnQ ABC-type polar am 100.0 7.2E-52 1.6E-56 406.1 22.8 216 381-610 2-228 (240)
50 COG1135 AbcC ABC-type metal io 100.0 1.9E-50 4.1E-55 415.8 20.7 217 382-609 2-233 (339)
51 COG1125 OpuBA ABC-type proline 100.0 1.7E-50 3.6E-55 403.6 18.9 217 382-612 2-230 (309)
52 COG1117 PstB ABC-type phosphat 100.0 2.5E-50 5.5E-55 392.9 19.0 220 380-609 6-239 (253)
53 cd03252 ABCC_Hemolysin The ABC 100.0 2.5E-49 5.5E-54 418.5 27.1 235 382-618 1-235 (237)
54 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-48 4.2E-53 416.2 27.9 240 378-619 16-255 (257)
55 cd03253 ABCC_ATM1_transporter 100.0 1E-47 2.2E-52 406.1 26.8 234 382-618 1-234 (236)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-47 2.2E-52 405.6 26.3 232 382-615 1-232 (234)
57 cd03254 ABCC_Glucan_exporter_l 100.0 1.3E-47 2.8E-52 403.4 26.8 227 380-608 1-227 (229)
58 COG4615 PvdE ABC-type sideroph 100.0 1.7E-44 3.7E-49 378.5 46.4 471 107-599 54-529 (546)
59 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.1E-47 6.7E-52 402.9 26.2 234 382-616 1-234 (238)
60 COG3839 MalK ABC-type sugar tr 100.0 1.5E-47 3.3E-52 411.0 23.4 216 381-612 3-228 (338)
61 cd03244 ABCC_MRP_domain2 Domai 100.0 4.5E-47 9.8E-52 397.1 26.1 220 380-601 1-220 (221)
62 COG1120 FepC ABC-type cobalami 100.0 1.6E-47 3.5E-52 396.0 21.3 214 381-608 2-229 (258)
63 TIGR02314 ABC_MetN D-methionin 100.0 6.8E-47 1.5E-51 416.1 25.3 225 382-617 2-241 (343)
64 PRK13631 cbiO cobalt transport 100.0 2.4E-46 5.2E-51 410.0 27.9 222 380-608 20-266 (320)
65 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-46 5.4E-51 391.2 26.1 220 380-600 1-220 (220)
66 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-46 5.2E-51 372.9 21.9 228 380-617 7-245 (263)
67 COG3840 ThiQ ABC-type thiamine 100.0 2E-46 4.3E-51 356.0 19.2 209 382-608 2-220 (231)
68 COG3842 PotA ABC-type spermidi 100.0 1E-46 2.2E-51 406.7 19.4 218 380-613 4-232 (352)
69 COG1116 TauB ABC-type nitrate/ 100.0 2.9E-46 6.2E-51 378.7 20.9 198 381-597 3-212 (248)
70 cd03248 ABCC_TAP TAP, the Tran 100.0 6.9E-46 1.5E-50 389.4 24.4 219 378-596 8-226 (226)
71 COG1122 CbiO ABC-type cobalt t 100.0 2.6E-46 5.6E-51 387.6 20.7 215 381-608 3-229 (235)
72 cd03261 ABC_Org_Solvent_Resist 100.0 9.3E-46 2E-50 390.7 24.1 213 382-608 1-227 (235)
73 COG1136 SalX ABC-type antimicr 100.0 1.5E-45 3.3E-50 374.0 24.3 207 382-598 2-222 (226)
74 cd03260 ABC_PstB_phosphate_tra 100.0 8.5E-46 1.8E-50 389.0 22.4 212 382-605 1-227 (227)
75 PRK13650 cbiO cobalt transport 100.0 2.2E-45 4.7E-50 396.9 24.8 217 381-608 4-230 (279)
76 PRK14269 phosphate ABC transpo 100.0 3.2E-45 6.8E-50 389.2 25.4 218 381-608 2-231 (246)
77 PRK11650 ugpC glycerol-3-phosp 100.0 2.5E-45 5.5E-50 407.0 25.5 218 381-613 3-230 (356)
78 TIGR01186 proV glycine betaine 100.0 2.2E-45 4.8E-50 406.1 24.0 206 397-613 6-225 (363)
79 PRK11432 fbpC ferric transport 100.0 2.6E-45 5.7E-50 405.7 24.5 215 381-611 6-230 (351)
80 PRK14273 phosphate ABC transpo 100.0 7.3E-45 1.6E-49 388.4 26.1 224 380-613 6-244 (254)
81 COG3638 ABC-type phosphate/pho 100.0 2.1E-45 4.6E-50 365.1 19.9 213 381-606 3-236 (258)
82 COG1124 DppF ABC-type dipeptid 100.0 4.6E-45 1E-49 365.9 21.2 226 381-616 3-240 (252)
83 cd03219 ABC_Mj1267_LivG_branch 100.0 5.8E-45 1.3E-49 385.0 23.0 217 382-608 1-233 (236)
84 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.7E-44 3.6E-49 373.6 25.8 203 380-602 5-207 (207)
85 PRK11153 metN DL-methionine tr 100.0 9.3E-45 2E-49 402.0 25.4 217 382-609 2-232 (343)
86 TIGR03265 PhnT2 putative 2-ami 100.0 8.2E-45 1.8E-49 402.4 24.8 217 381-613 4-230 (353)
87 TIGR00972 3a0107s01c2 phosphat 100.0 1.5E-44 3.2E-49 384.4 25.5 217 382-608 2-233 (247)
88 PRK14242 phosphate transporter 100.0 1.3E-44 2.7E-49 386.4 24.7 218 381-608 6-238 (253)
89 PRK13647 cbiO cobalt transport 100.0 1.5E-44 3.3E-49 389.2 25.1 213 381-606 4-226 (274)
90 PRK14250 phosphate ABC transpo 100.0 2.5E-44 5.5E-49 380.9 26.3 223 381-616 3-230 (241)
91 PRK13637 cbiO cobalt transport 100.0 3E-44 6.6E-49 389.3 27.4 218 382-608 3-235 (287)
92 COG4178 ABC-type uncharacteriz 100.0 5.9E-41 1.3E-45 380.6 54.7 469 104-592 89-587 (604)
93 PRK13635 cbiO cobalt transport 100.0 2.4E-44 5.2E-49 388.5 25.0 216 381-608 5-230 (279)
94 PRK10744 pstB phosphate transp 100.0 6.3E-44 1.4E-48 382.2 28.0 220 379-608 11-245 (260)
95 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.2E-44 2.5E-49 389.4 22.4 218 383-614 26-257 (269)
96 PRK13643 cbiO cobalt transport 100.0 2.6E-44 5.7E-49 390.0 25.1 217 382-608 2-234 (288)
97 PRK09452 potA putrescine/sperm 100.0 2.8E-44 6.1E-49 400.0 25.9 217 381-613 14-240 (375)
98 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.1E-44 4.6E-49 370.6 22.9 210 381-608 4-228 (254)
99 cd03256 ABC_PhnC_transporter A 100.0 2.2E-44 4.7E-49 381.9 23.8 212 382-606 1-233 (241)
100 PRK13646 cbiO cobalt transport 100.0 3.5E-44 7.6E-49 388.8 25.8 221 381-608 2-236 (286)
101 PRK14235 phosphate transporter 100.0 3.8E-44 8.3E-49 385.1 25.8 220 379-608 17-252 (267)
102 cd03296 ABC_CysA_sulfate_impor 100.0 2.5E-44 5.3E-49 380.8 23.9 211 382-608 3-227 (239)
103 TIGR00960 3a0501s02 Type II (G 100.0 1.2E-44 2.5E-49 377.4 21.0 203 382-596 2-216 (216)
104 cd03224 ABC_TM1139_LivF_branch 100.0 3.1E-44 6.8E-49 375.9 24.2 217 382-607 1-221 (222)
105 PRK10851 sulfate/thiosulfate t 100.0 3E-44 6.6E-49 397.9 25.3 217 381-613 2-232 (353)
106 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.3E-43 2.9E-48 381.2 29.5 218 378-615 36-254 (282)
107 PRK13642 cbiO cobalt transport 100.0 4.9E-44 1.1E-48 386.1 25.8 217 381-608 4-230 (277)
108 COG2884 FtsE Predicted ATPase 100.0 1.2E-44 2.6E-49 347.1 18.2 208 382-602 2-221 (223)
109 TIGR02315 ABC_phnC phosphonate 100.0 3.5E-44 7.6E-49 380.8 23.7 214 382-605 2-233 (243)
110 PRK14267 phosphate ABC transpo 100.0 4.1E-44 9E-49 382.4 24.4 218 381-608 4-238 (253)
111 COG1118 CysA ABC-type sulfate/ 100.0 1.2E-44 2.7E-49 371.6 19.3 215 381-611 2-231 (345)
112 TIGR03258 PhnT 2-aminoethylpho 100.0 3.6E-44 7.9E-49 397.7 24.7 218 380-613 4-234 (362)
113 cd03263 ABC_subfamily_A The AB 100.0 3.2E-44 7E-49 375.2 22.6 211 382-605 1-219 (220)
114 cd03250 ABCC_MRP_domain1 Domai 100.0 4.5E-44 9.8E-49 369.5 23.2 200 382-595 1-204 (204)
115 PRK13634 cbiO cobalt transport 100.0 4.1E-44 8.9E-49 388.9 23.9 217 382-608 3-236 (290)
116 cd03258 ABC_MetN_methionine_tr 100.0 4.6E-44 1E-48 377.4 23.4 216 382-608 2-231 (233)
117 PRK14274 phosphate ABC transpo 100.0 6.7E-44 1.5E-48 381.9 25.0 218 381-608 12-244 (259)
118 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.5E-44 1.2E-48 378.8 23.6 218 382-608 1-226 (242)
119 PRK09536 btuD corrinoid ABC tr 100.0 7.5E-44 1.6E-48 398.6 25.7 221 381-617 3-236 (402)
120 PRK14247 phosphate ABC transpo 100.0 8.5E-44 1.8E-48 379.3 24.9 218 381-608 3-235 (250)
121 cd03259 ABC_Carb_Solutes_like 100.0 2.7E-44 5.9E-49 373.8 20.5 203 382-600 1-213 (213)
122 PRK14251 phosphate ABC transpo 100.0 7.3E-44 1.6E-48 380.1 24.2 218 381-608 4-236 (251)
123 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.6E-44 2.1E-48 375.5 24.8 216 382-608 2-222 (236)
124 PRK14240 phosphate transporter 100.0 9.2E-44 2E-48 379.1 24.8 219 380-608 2-235 (250)
125 PRK11000 maltose/maltodextrin 100.0 5.7E-44 1.2E-48 398.9 23.9 214 381-610 3-226 (369)
126 PRK14236 phosphate transporter 100.0 1.4E-43 3E-48 381.8 26.0 219 380-608 24-257 (272)
127 PRK13636 cbiO cobalt transport 100.0 9.9E-44 2.1E-48 384.8 24.9 215 381-608 5-232 (283)
128 PRK14239 phosphate transporter 100.0 1.1E-43 2.4E-48 379.0 24.7 218 381-608 5-237 (252)
129 PRK15079 oligopeptide ABC tran 100.0 1.2E-43 2.5E-48 390.3 25.6 229 381-615 8-259 (331)
130 TIGR03005 ectoine_ehuA ectoine 100.0 1.1E-43 2.5E-48 378.7 24.5 218 382-609 1-238 (252)
131 PRK11629 lolD lipoprotein tran 100.0 9.6E-44 2.1E-48 374.8 23.3 210 381-601 5-228 (233)
132 PRK14268 phosphate ABC transpo 100.0 2.6E-43 5.5E-48 377.1 26.9 220 381-610 12-245 (258)
133 PRK14248 phosphate ABC transpo 100.0 1.9E-43 4.1E-48 380.3 26.0 218 381-608 21-253 (268)
134 PRK14237 phosphate transporter 100.0 1.9E-43 4.2E-48 379.6 26.0 219 380-608 19-252 (267)
135 PRK13633 cobalt transporter AT 100.0 1.3E-43 2.8E-48 383.5 24.7 217 381-608 4-234 (280)
136 PRK14245 phosphate ABC transpo 100.0 1.1E-43 2.4E-48 378.3 23.8 218 381-608 3-235 (250)
137 cd03264 ABC_drug_resistance_li 100.0 8E-44 1.7E-48 369.7 22.1 203 382-600 1-211 (211)
138 PRK13651 cobalt transporter AT 100.0 1.3E-43 2.8E-48 386.2 24.8 217 382-608 3-255 (305)
139 cd03226 ABC_cobalt_CbiO_domain 100.0 5.7E-44 1.2E-48 369.0 20.7 199 383-597 1-205 (205)
140 cd03218 ABC_YhbG The ABC trans 100.0 9.9E-44 2.1E-48 374.7 22.8 216 382-607 1-222 (232)
141 PRK14244 phosphate ABC transpo 100.0 8.7E-44 1.9E-48 379.4 22.6 219 382-610 6-240 (251)
142 PRK13632 cbiO cobalt transport 100.0 1.5E-43 3.3E-48 381.3 24.7 216 381-608 7-232 (271)
143 PRK10070 glycine betaine trans 100.0 1.1E-43 2.5E-48 396.9 24.5 205 398-613 42-260 (400)
144 PRK14259 phosphate ABC transpo 100.0 3.1E-43 6.7E-48 378.3 26.8 219 380-608 12-254 (269)
145 PRK14238 phosphate transporter 100.0 3.6E-43 7.7E-48 378.2 27.2 219 381-609 24-257 (271)
146 cd03266 ABC_NatA_sodium_export 100.0 1.7E-43 3.7E-48 369.2 24.0 211 382-600 2-218 (218)
147 PRK11614 livF leucine/isoleuci 100.0 1.9E-43 4.2E-48 373.5 24.7 218 381-607 5-226 (237)
148 TIGR02769 nickel_nikE nickel i 100.0 1.6E-43 3.4E-48 380.1 24.2 225 382-617 3-250 (265)
149 PRK13640 cbiO cobalt transport 100.0 2.3E-43 5E-48 381.7 25.6 217 380-608 4-233 (282)
150 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.6E-44 1.6E-48 371.9 21.0 204 382-596 1-218 (218)
151 PRK11831 putative ABC transpor 100.0 1.9E-43 4.2E-48 380.1 24.7 223 381-617 7-243 (269)
152 TIGR03410 urea_trans_UrtE urea 100.0 1.1E-43 2.3E-48 373.9 22.1 211 382-605 1-219 (230)
153 PRK11607 potG putrescine trans 100.0 2.2E-43 4.8E-48 393.6 25.7 218 380-613 18-245 (377)
154 PRK14261 phosphate ABC transpo 100.0 5E-43 1.1E-47 374.0 27.3 218 381-608 6-238 (253)
155 cd03247 ABCC_cytochrome_bd The 100.0 1.3E-43 2.8E-48 357.8 21.4 178 382-600 1-178 (178)
156 PRK14271 phosphate ABC transpo 100.0 6E-43 1.3E-47 377.0 27.8 222 381-608 21-252 (276)
157 PRK10575 iron-hydroxamate tran 100.0 1.9E-43 4.1E-48 379.5 23.6 213 381-607 11-237 (265)
158 PRK14249 phosphate ABC transpo 100.0 7.5E-43 1.6E-47 372.2 28.0 218 381-608 4-236 (251)
159 PRK14262 phosphate ABC transpo 100.0 2.7E-43 6E-48 375.4 24.7 218 381-608 3-235 (250)
160 PRK13644 cbiO cobalt transport 100.0 3.3E-43 7.1E-48 378.9 25.5 214 382-608 2-225 (274)
161 PRK13645 cbiO cobalt transport 100.0 3.8E-43 8.3E-48 381.7 26.2 223 380-608 5-241 (289)
162 PRK13652 cbiO cobalt transport 100.0 2.8E-43 6.2E-48 380.2 24.9 214 382-608 4-228 (277)
163 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-43 3.6E-48 366.5 22.1 203 382-600 1-208 (208)
164 PRK11264 putative amino-acid A 100.0 5.4E-43 1.2E-47 373.3 26.6 217 382-608 4-234 (250)
165 PRK11124 artP arginine transpo 100.0 2.7E-43 5.9E-48 373.6 24.2 217 382-608 3-231 (242)
166 PRK14243 phosphate transporter 100.0 4.9E-43 1.1E-47 375.9 26.3 218 381-608 10-249 (264)
167 TIGR03415 ABC_choXWV_ATP choli 100.0 2.1E-43 4.5E-48 391.9 24.1 208 397-615 37-262 (382)
168 PRK13648 cbiO cobalt transport 100.0 2.8E-43 6.1E-48 379.0 24.4 216 381-608 7-232 (269)
169 TIGR02211 LolD_lipo_ex lipopro 100.0 2.1E-43 4.6E-48 369.3 22.7 209 382-597 2-220 (221)
170 PRK09473 oppD oligopeptide tra 100.0 5.8E-43 1.2E-47 385.0 27.2 231 381-616 12-260 (330)
171 cd03265 ABC_DrrA DrrA is the A 100.0 2.8E-43 6.1E-48 368.0 23.2 209 382-605 1-219 (220)
172 cd03301 ABC_MalK_N The N-termi 100.0 1.8E-43 3.8E-48 367.8 21.5 203 382-600 1-213 (213)
173 PRK14256 phosphate ABC transpo 100.0 8.5E-43 1.9E-47 372.0 27.3 221 380-610 3-239 (252)
174 PRK14253 phosphate ABC transpo 100.0 4.7E-43 1E-47 373.4 25.1 218 381-608 3-234 (249)
175 PRK09493 glnQ glutamine ABC tr 100.0 2.9E-43 6.3E-48 372.9 23.1 217 382-608 2-226 (240)
176 cd03290 ABCC_SUR1_N The SUR do 100.0 3.8E-43 8.2E-48 366.5 23.7 210 383-595 2-218 (218)
177 PRK13649 cbiO cobalt transport 100.0 5.9E-43 1.3E-47 378.9 26.0 220 382-608 3-235 (280)
178 PRK13537 nodulation ABC transp 100.0 4.7E-43 1E-47 382.7 25.3 217 381-608 7-228 (306)
179 PRK11231 fecE iron-dicitrate t 100.0 3.5E-43 7.5E-48 375.6 23.8 212 382-607 3-227 (255)
180 PRK10619 histidine/lysine/argi 100.0 4.9E-43 1.1E-47 374.8 24.9 215 380-608 4-242 (257)
181 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.7E-43 3.6E-48 369.7 20.5 206 382-603 1-219 (220)
182 PRK14272 phosphate ABC transpo 100.0 1E-42 2.2E-47 371.6 26.5 226 381-613 4-242 (252)
183 PRK10247 putative ABC transpor 100.0 3.1E-43 6.8E-48 368.6 22.2 209 381-603 7-223 (225)
184 PRK14270 phosphate ABC transpo 100.0 7.5E-43 1.6E-47 372.2 25.5 218 381-608 4-236 (251)
185 TIGR03411 urea_trans_UrtD urea 100.0 6.2E-43 1.3E-47 371.0 24.7 221 382-607 3-231 (242)
186 PRK10895 lipopolysaccharide AB 100.0 5.3E-43 1.1E-47 371.2 23.9 218 381-608 3-227 (241)
187 cd03292 ABC_FtsE_transporter F 100.0 3.3E-43 7.2E-48 366.0 21.9 202 382-596 1-214 (214)
188 PRK13638 cbiO cobalt transport 100.0 5.4E-43 1.2E-47 377.2 24.0 213 382-608 2-226 (271)
189 PRK11247 ssuB aliphatic sulfon 100.0 5.9E-43 1.3E-47 372.4 24.0 205 381-604 12-220 (257)
190 PRK14254 phosphate ABC transpo 100.0 1.1E-42 2.5E-47 376.4 26.4 219 380-608 38-270 (285)
191 PRK11308 dppF dipeptide transp 100.0 9E-43 1.9E-47 383.0 25.9 226 381-616 5-253 (327)
192 PRK11300 livG leucine/isoleuci 100.0 7.7E-43 1.7E-47 373.2 24.7 221 381-608 5-244 (255)
193 TIGR02673 FtsE cell division A 100.0 3.3E-43 7.1E-48 366.0 21.3 201 382-595 2-214 (214)
194 PRK14266 phosphate ABC transpo 100.0 8.3E-43 1.8E-47 371.7 24.7 221 381-611 3-238 (250)
195 PRK13641 cbiO cobalt transport 100.0 1.3E-42 2.9E-47 376.7 26.6 221 381-608 2-235 (287)
196 PRK14252 phosphate ABC transpo 100.0 1.3E-42 2.9E-47 373.0 26.4 220 379-608 14-250 (265)
197 cd03257 ABC_NikE_OppD_transpor 100.0 8.8E-43 1.9E-47 366.5 24.2 212 382-600 2-228 (228)
198 cd03225 ABC_cobalt_CbiO_domain 100.0 3.5E-43 7.6E-48 365.0 20.8 201 383-595 1-211 (211)
199 PRK14260 phosphate ABC transpo 100.0 9.1E-43 2E-47 373.1 24.5 219 380-608 6-244 (259)
200 PRK11022 dppD dipeptide transp 100.0 9.4E-43 2E-47 383.0 25.2 227 382-616 4-252 (326)
201 PRK13548 hmuV hemin importer A 100.0 1.4E-42 2.9E-47 371.2 25.5 212 382-607 3-230 (258)
202 cd03246 ABCC_Protease_Secretio 100.0 7E-43 1.5E-47 350.7 21.5 172 382-596 1-173 (173)
203 cd03298 ABC_ThiQ_thiamine_tran 100.0 9.3E-43 2E-47 361.7 23.2 201 382-600 1-211 (211)
204 TIGR03873 F420-0_ABC_ATP propo 100.0 1E-42 2.2E-47 372.2 23.9 212 382-607 2-226 (256)
205 PRK10584 putative ABC transpor 100.0 1.1E-42 2.3E-47 365.7 23.6 208 381-599 6-227 (228)
206 TIGR01288 nodI ATP-binding ABC 100.0 1.5E-42 3.2E-47 379.3 25.4 217 381-608 4-225 (303)
207 cd03300 ABC_PotA_N PotA is an 100.0 8.3E-43 1.8E-47 367.3 22.5 211 382-608 1-221 (232)
208 PRK13639 cbiO cobalt transport 100.0 9.5E-43 2.1E-47 375.7 23.3 214 382-608 2-227 (275)
209 PRK14275 phosphate ABC transpo 100.0 1.6E-42 3.4E-47 375.7 25.1 220 380-609 38-272 (286)
210 PRK14263 phosphate ABC transpo 100.0 1.9E-42 4.1E-47 370.3 25.1 218 381-608 8-246 (261)
211 PRK14246 phosphate ABC transpo 100.0 1.4E-42 3E-47 370.5 23.8 226 381-616 10-250 (257)
212 PRK14241 phosphate transporter 100.0 1.8E-42 3.8E-47 370.8 24.4 218 381-608 4-243 (258)
213 cd03235 ABC_Metallic_Cations A 100.0 4.8E-43 1E-47 364.5 19.5 198 383-600 1-213 (213)
214 TIGR00968 3a0106s01 sulfate AB 100.0 2.2E-42 4.8E-47 365.1 24.8 215 382-608 1-221 (237)
215 PRK10253 iron-enterobactin tra 100.0 1.5E-42 3.3E-47 372.4 24.0 214 380-607 6-233 (265)
216 PRK11701 phnK phosphonate C-P 100.0 4E-42 8.6E-47 368.0 26.8 226 381-615 6-249 (258)
217 PRK10771 thiQ thiamine transpo 100.0 2.4E-42 5.1E-47 363.9 24.7 209 382-608 2-220 (232)
218 PRK10908 cell division protein 100.0 1.7E-42 3.7E-47 362.6 23.3 204 382-598 2-217 (222)
219 PRK14258 phosphate ABC transpo 100.0 2.1E-42 4.5E-47 370.5 24.5 219 380-608 6-246 (261)
220 PRK14255 phosphate ABC transpo 100.0 2.5E-42 5.4E-47 368.5 24.8 219 381-609 5-238 (252)
221 PRK14264 phosphate ABC transpo 100.0 2.6E-42 5.6E-47 377.2 25.4 219 380-608 44-290 (305)
222 PRK11144 modC molybdate transp 100.0 2.4E-42 5.2E-47 384.1 24.5 211 382-609 2-220 (352)
223 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-42 2.5E-47 361.7 20.5 205 382-596 1-213 (213)
224 PRK13536 nodulation factor exp 100.0 3.6E-42 7.7E-47 379.5 25.6 217 381-608 41-262 (340)
225 TIGR03522 GldA_ABC_ATP gliding 100.0 3.3E-42 7.2E-47 375.9 25.1 216 382-608 3-222 (301)
226 PRK15112 antimicrobial peptide 100.0 3.9E-42 8.6E-47 369.5 25.2 228 381-618 4-251 (267)
227 PRK15093 antimicrobial peptide 100.0 3.6E-42 7.8E-47 379.7 25.3 228 381-616 3-257 (330)
228 PRK09984 phosphonate/organopho 100.0 4.3E-42 9.4E-47 368.6 25.1 223 381-620 4-252 (262)
229 cd03269 ABC_putative_ATPase Th 100.0 1.4E-42 3.1E-47 360.0 20.1 205 382-600 1-210 (210)
230 PRK14265 phosphate ABC transpo 100.0 7.6E-42 1.7E-46 368.3 26.2 218 381-608 20-259 (274)
231 PRK13547 hmuV hemin importer A 100.0 4E-42 8.7E-47 369.0 23.8 216 382-607 2-244 (272)
232 TIGR01978 sufC FeS assembly AT 100.0 2.9E-42 6.3E-47 366.1 22.4 212 382-606 1-233 (243)
233 cd03299 ABC_ModC_like Archeal 100.0 6E-42 1.3E-46 361.3 24.4 210 382-608 1-220 (235)
234 TIGR01277 thiQ thiamine ABC tr 100.0 4.5E-42 9.7E-47 357.0 23.1 202 382-601 1-212 (213)
235 cd03234 ABCG_White The White s 100.0 2.9E-42 6.3E-47 361.8 21.3 214 382-600 4-226 (226)
236 PRK10419 nikE nickel transport 100.0 6.4E-42 1.4E-46 367.9 24.2 227 381-615 3-248 (268)
237 PRK10418 nikD nickel transport 100.0 3.1E-41 6.7E-46 360.2 25.6 224 381-618 4-242 (254)
238 cd03233 ABC_PDR_domain1 The pl 100.0 1.5E-41 3.2E-46 349.7 22.0 191 381-600 3-202 (202)
239 TIGR02142 modC_ABC molybdenum 100.0 1.7E-41 3.6E-46 377.9 24.1 209 386-610 4-224 (354)
240 TIGR02982 heterocyst_DevA ABC 100.0 1.7E-41 3.6E-46 354.5 22.4 208 382-596 2-219 (220)
241 TIGR01188 drrA daunorubicin re 100.0 2E-41 4.3E-46 370.2 23.2 200 397-608 6-214 (302)
242 cd03230 ABC_DR_subfamily_A Thi 100.0 1.9E-41 4.2E-46 340.3 21.0 170 382-596 1-173 (173)
243 PRK11248 tauB taurine transpor 100.0 2.5E-41 5.4E-46 360.4 23.0 207 382-603 2-216 (255)
244 COG4175 ProV ABC-type proline/ 100.0 7.1E-42 1.5E-46 351.2 17.4 223 381-614 4-261 (386)
245 TIGR02323 CP_lyasePhnK phospho 100.0 3.9E-41 8.4E-46 359.5 23.9 226 381-615 3-246 (253)
246 cd03228 ABCC_MRP_Like The MRP 100.0 3.9E-41 8.5E-46 337.4 21.4 171 382-595 1-171 (171)
247 cd03229 ABC_Class3 This class 100.0 3.2E-41 7E-46 340.3 20.7 172 382-595 1-178 (178)
248 cd03213 ABCG_EPDR ABCG transpo 100.0 3.9E-41 8.4E-46 344.3 21.0 183 381-600 3-194 (194)
249 cd03297 ABC_ModC_molybdenum_tr 100.0 6.4E-41 1.4E-45 348.7 22.3 204 383-600 3-214 (214)
250 cd03215 ABC_Carb_Monos_II This 100.0 4E-41 8.7E-46 340.8 20.2 172 381-596 4-182 (182)
251 cd03232 ABC_PDR_domain2 The pl 100.0 4.8E-41 1E-45 343.1 20.2 182 381-600 3-192 (192)
252 cd03223 ABCD_peroxisomal_ALDP 100.0 7.1E-41 1.5E-45 333.5 20.8 164 382-595 1-164 (166)
253 TIGR03740 galliderm_ABC gallid 100.0 9.1E-41 2E-45 349.8 22.6 205 382-604 1-210 (223)
254 PRK09580 sufC cysteine desulfu 100.0 9.9E-41 2.1E-45 355.5 23.0 216 382-605 2-233 (248)
255 COG1131 CcmA ABC-type multidru 100.0 8.6E-41 1.9E-45 361.4 22.5 214 381-608 4-227 (293)
256 PRK15056 manganese/iron transp 100.0 1.6E-40 3.4E-45 358.1 23.0 210 381-607 6-230 (272)
257 TIGR00955 3a01204 The Eye Pigm 100.0 3.9E-40 8.4E-45 392.8 28.2 219 380-607 16-256 (617)
258 CHL00131 ycf16 sulfate ABC tra 100.0 2.6E-40 5.7E-45 353.0 23.8 212 381-605 7-239 (252)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.6E-40 5.6E-45 340.0 22.4 185 382-606 1-192 (200)
260 COG0410 LivF ABC-type branched 100.0 4.5E-40 9.7E-45 327.9 22.7 220 381-608 3-227 (237)
261 TIGR02770 nickel_nikD nickel i 100.0 2.4E-40 5.3E-45 348.1 21.7 207 399-615 1-223 (230)
262 PRK03695 vitamin B12-transport 100.0 4.8E-40 1E-44 349.4 23.2 210 383-607 2-222 (248)
263 TIGR03608 L_ocin_972_ABC putat 100.0 2E-40 4.2E-45 343.1 19.6 194 384-591 1-206 (206)
264 PRK09544 znuC high-affinity zi 100.0 7.9E-40 1.7E-44 347.6 24.4 208 381-617 4-217 (251)
265 COG1123 ATPase components of v 100.0 4.8E-40 1E-44 368.8 22.8 228 381-618 280-530 (539)
266 PRK10261 glutathione transport 100.0 7.9E-40 1.7E-44 390.6 25.8 225 381-615 313-561 (623)
267 cd03214 ABC_Iron-Siderophores_ 100.0 3.5E-40 7.6E-45 333.3 19.3 177 383-600 1-180 (180)
268 COG4619 ABC-type uncharacteriz 100.0 1.4E-40 3.1E-45 311.8 14.8 192 396-597 15-213 (223)
269 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-39 2.3E-44 324.0 21.4 159 382-598 1-162 (163)
270 COG4555 NatA ABC-type Na+ tran 100.0 2.9E-40 6.3E-45 319.4 15.8 217 382-608 2-223 (245)
271 cd03231 ABC_CcmA_heme_exporter 100.0 1.6E-39 3.4E-44 334.6 22.3 195 382-591 1-198 (201)
272 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-39 3.5E-44 380.4 25.2 213 381-607 11-229 (510)
273 PRK13549 xylose transporter AT 100.0 1E-39 2.2E-44 382.3 23.2 216 381-606 5-231 (506)
274 TIGR01184 ntrCD nitrate transp 100.0 1.8E-39 4E-44 341.1 21.8 195 400-606 1-203 (230)
275 cd03267 ABC_NatA_like Similar 100.0 2.2E-39 4.7E-44 341.9 21.9 196 397-600 34-236 (236)
276 PRK13540 cytochrome c biogenes 100.0 1.8E-39 3.9E-44 334.0 20.7 194 382-590 2-198 (200)
277 PRK09700 D-allose transporter 100.0 1.5E-39 3.3E-44 381.4 22.6 217 381-607 5-234 (510)
278 COG0444 DppD ABC-type dipeptid 100.0 8E-39 1.7E-43 335.4 23.9 228 382-617 2-253 (316)
279 PRK10762 D-ribose transporter 100.0 2.6E-39 5.5E-44 378.5 22.3 216 381-606 4-229 (501)
280 COG4559 ABC-type hemin transpo 100.0 4.5E-39 9.7E-44 313.5 20.1 213 382-608 2-231 (259)
281 PRK13538 cytochrome c biogenes 100.0 4.5E-39 9.8E-44 332.0 21.1 195 382-591 2-202 (204)
282 PLN03211 ABC transporter G-25; 100.0 6.5E-39 1.4E-43 382.0 25.5 202 397-607 81-296 (659)
283 PRK10261 glutathione transport 100.0 2.6E-39 5.5E-44 386.2 22.1 225 381-613 12-264 (623)
284 PRK10982 galactose/methyl gala 100.0 3.2E-39 6.9E-44 377.0 22.2 213 384-606 1-222 (491)
285 PRK11288 araG L-arabinose tran 100.0 5.5E-39 1.2E-43 375.7 23.5 212 381-602 4-224 (501)
286 PRK15134 microcin C ABC transp 100.0 6.4E-39 1.4E-43 377.6 23.1 220 381-608 275-516 (529)
287 PRK10938 putative molybdenum t 100.0 7.9E-39 1.7E-43 373.8 23.2 211 382-608 4-225 (490)
288 PRK13539 cytochrome c biogenes 100.0 1.2E-38 2.6E-43 329.6 21.8 194 382-593 3-200 (207)
289 COG4608 AppF ABC-type oligopep 100.0 4.9E-39 1.1E-43 330.3 18.6 196 381-617 4-209 (268)
290 COG1123 ATPase components of v 100.0 1.7E-38 3.7E-43 356.2 24.5 228 381-617 5-254 (539)
291 TIGR01189 ccmA heme ABC export 100.0 9E-39 1.9E-43 328.3 19.9 192 382-589 1-196 (198)
292 PRK15134 microcin C ABC transp 100.0 1.8E-38 3.9E-43 373.7 25.0 220 381-608 5-247 (529)
293 PRK13543 cytochrome c biogenes 100.0 2.2E-38 4.7E-43 329.4 22.1 196 381-593 11-212 (214)
294 COG4172 ABC-type uncharacteriz 100.0 2.5E-38 5.4E-43 333.6 22.6 224 381-615 276-524 (534)
295 COG0411 LivG ABC-type branched 100.0 8.1E-39 1.8E-43 321.3 17.9 217 382-608 5-240 (250)
296 PRK13546 teichoic acids export 100.0 4.4E-38 9.5E-43 336.0 24.6 208 381-608 4-233 (264)
297 PRK10535 macrolide transporter 100.0 2.6E-38 5.5E-43 378.9 24.4 219 381-606 4-231 (648)
298 TIGR03771 anch_rpt_ABC anchore 100.0 1.9E-38 4.1E-43 331.9 19.8 187 405-608 1-202 (223)
299 TIGR02633 xylG D-xylose ABC tr 100.0 5.5E-38 1.2E-42 367.6 25.5 212 382-605 2-228 (500)
300 TIGR02324 CP_lyasePhnL phospho 100.0 3E-38 6.4E-43 331.1 20.7 200 382-591 2-222 (224)
301 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-38 5.2E-43 372.2 22.1 220 381-607 279-517 (520)
302 PRK13549 xylose transporter AT 100.0 3.1E-38 6.7E-43 369.8 21.3 219 381-606 259-493 (506)
303 PRK13545 tagH teichoic acids e 100.0 1.8E-37 3.8E-42 349.6 26.2 211 381-616 21-240 (549)
304 TIGR03269 met_CoM_red_A2 methy 100.0 3.8E-38 8.2E-43 370.5 21.7 212 382-607 1-258 (520)
305 TIGR01166 cbiO cobalt transpor 100.0 3.4E-38 7.3E-43 322.0 18.3 174 397-581 5-189 (190)
306 PRK13541 cytochrome c biogenes 100.0 4.9E-38 1.1E-42 322.0 19.3 189 382-589 2-193 (195)
307 COG1137 YhbG ABC-type (unclass 100.0 7.8E-39 1.7E-43 309.1 12.5 222 381-608 4-229 (243)
308 KOG0060 Long-chain acyl-CoA tr 100.0 4.6E-35 1E-39 322.0 43.1 419 163-593 186-641 (659)
309 COG4598 HisP ABC-type histidin 100.0 4.6E-38 9.9E-43 297.7 16.4 219 381-610 6-244 (256)
310 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.4E-37 3E-42 325.5 21.8 197 382-600 23-224 (224)
311 COG4525 TauB ABC-type taurine 100.0 5.2E-38 1.1E-42 301.6 16.1 204 382-602 4-219 (259)
312 COG4148 ModC ABC-type molybdat 100.0 4.6E-38 1E-42 317.7 16.3 196 402-608 16-219 (352)
313 TIGR01257 rim_protein retinal- 100.0 3.4E-37 7.3E-42 392.7 26.7 216 380-608 927-1150(2272)
314 COG4181 Predicted ABC-type tra 100.0 1.5E-37 3.3E-42 292.3 17.5 211 381-599 6-227 (228)
315 TIGR01187 potA spermidine/putr 100.0 1.5E-37 3.3E-42 342.2 19.7 186 415-613 1-196 (325)
316 PRK09700 D-allose transporter 100.0 1.8E-37 3.9E-42 363.9 21.4 212 381-604 265-495 (510)
317 TIGR01257 rim_protein retinal- 100.0 1E-35 2.2E-40 379.3 38.6 216 380-608 1936-2160(2272)
318 COG4161 ArtP ABC-type arginine 100.0 2.3E-37 5E-42 287.8 16.6 214 381-608 2-231 (242)
319 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-37 7.1E-42 361.0 21.6 217 381-604 257-489 (500)
320 TIGR00956 3a01205 Pleiotropic 100.0 5.8E-37 1.2E-41 391.7 24.9 213 381-604 759-990 (1394)
321 COG1129 MglA ABC-type sugar tr 100.0 1.4E-36 3.1E-41 338.8 24.4 212 381-602 8-229 (500)
322 COG4604 CeuD ABC-type enteroch 100.0 1.2E-37 2.6E-42 299.7 13.6 213 382-608 2-226 (252)
323 PRK10762 D-ribose transporter 100.0 5.6E-37 1.2E-41 358.8 21.3 210 381-605 257-482 (501)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.6E-37 2.1E-41 360.4 22.8 209 381-607 4-248 (552)
325 PRK11288 araG L-arabinose tran 100.0 6.1E-37 1.3E-41 358.4 19.8 212 381-606 257-484 (501)
326 PRK11819 putative ABC transpor 100.0 1.5E-36 3.3E-41 358.7 22.6 209 381-607 6-250 (556)
327 PRK15064 ABC transporter ATP-b 100.0 1.8E-36 4E-41 356.8 23.0 208 382-607 2-242 (530)
328 PRK15177 Vi polysaccharide exp 100.0 1.5E-36 3.3E-41 314.7 19.1 186 399-607 2-192 (213)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.2E-36 4.8E-41 293.5 18.8 143 382-595 1-144 (144)
330 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.2E-36 4.8E-41 319.8 20.2 193 389-606 1-206 (246)
331 cd03236 ABC_RNaseL_inhibitor_d 100.0 9.3E-37 2E-41 323.9 17.0 202 385-601 4-221 (255)
332 PRK15064 ABC transporter ATP-b 100.0 5.1E-36 1.1E-40 353.0 23.7 202 381-608 319-526 (530)
333 PRK15439 autoinducer 2 ABC tra 100.0 9.4E-36 2E-40 348.7 20.9 211 381-606 268-491 (510)
334 COG3845 ABC-type uncharacteriz 100.0 2.9E-35 6.3E-40 320.9 20.8 210 381-600 4-222 (501)
335 PRK10938 putative molybdenum t 100.0 1.4E-35 3E-40 346.5 18.9 205 381-599 260-484 (490)
336 PRK10982 galactose/methyl gala 100.0 4.4E-35 9.5E-40 342.2 21.7 212 381-603 250-476 (491)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-34 2.3E-39 286.8 19.6 155 383-595 1-157 (157)
338 cd03222 ABC_RNaseL_inhibitor T 100.0 1E-34 2.2E-39 289.8 16.9 145 385-597 4-151 (177)
339 PLN03140 ABC transporter G fam 100.0 3.9E-34 8.4E-39 364.2 25.6 214 381-604 867-1107(1470)
340 PRK11819 putative ABC transpor 100.0 4E-34 8.7E-39 338.1 23.3 202 381-608 324-534 (556)
341 cd03238 ABC_UvrA The excision 100.0 2.5E-34 5.4E-39 286.8 18.1 156 396-595 7-165 (176)
342 PLN03073 ABC transporter F fam 100.0 4.5E-34 9.9E-39 342.1 23.5 199 381-605 508-712 (718)
343 PRK11147 ABC transporter ATPas 100.0 5.1E-34 1.1E-38 341.7 23.1 198 381-605 319-526 (635)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.8E-34 1.5E-38 336.2 23.5 200 381-607 322-531 (552)
345 PRK10636 putative ABC transpor 100.0 6.6E-34 1.4E-38 339.9 22.8 200 381-606 312-516 (638)
346 PRK13409 putative ATPase RIL; 100.0 8.8E-34 1.9E-38 334.0 21.4 193 381-602 340-537 (590)
347 COG1101 PhnK ABC-type uncharac 100.0 7.5E-34 1.6E-38 277.6 16.8 206 396-601 18-232 (263)
348 COG4172 ABC-type uncharacteriz 100.0 8.5E-34 1.8E-38 299.4 18.4 231 381-619 6-259 (534)
349 COG1119 ModF ABC-type molybden 100.0 3.5E-33 7.6E-38 280.6 20.0 211 380-601 30-256 (257)
350 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-33 2.3E-38 361.7 19.9 207 397-606 74-299 (1394)
351 PRK10636 putative ABC transpor 100.0 6.4E-33 1.4E-37 331.5 23.0 208 382-607 2-236 (638)
352 COG4167 SapF ABC-type antimicr 100.0 3.1E-33 6.7E-38 265.5 15.5 214 397-620 26-253 (267)
353 COG4136 ABC-type uncharacteriz 100.0 3.3E-33 7.1E-38 257.3 14.7 192 382-589 3-205 (213)
354 PLN03140 ABC transporter G fam 100.0 3E-33 6.5E-38 356.1 16.8 207 397-606 178-426 (1470)
355 PRK11147 ABC transporter ATPas 100.0 3.5E-32 7.6E-37 325.9 23.5 207 381-607 3-243 (635)
356 KOG0061 Transporter, ABC super 100.0 1.2E-30 2.5E-35 308.1 33.6 220 380-607 24-260 (613)
357 PRK13409 putative ATPase RIL; 100.0 1E-32 2.3E-37 324.9 14.3 193 385-594 77-287 (590)
358 COG1134 TagH ABC-type polysacc 100.0 2.2E-31 4.8E-36 268.2 20.4 189 396-608 39-237 (249)
359 PF00005 ABC_tran: ABC transpo 100.0 3.4E-32 7.4E-37 262.5 11.8 136 400-549 1-137 (137)
360 PLN03073 ABC transporter F fam 100.0 1.7E-31 3.6E-36 320.0 18.8 221 380-607 176-431 (718)
361 COG4152 ABC-type uncharacteriz 100.0 9.9E-32 2.1E-36 267.4 13.5 213 381-608 2-220 (300)
362 COG0488 Uup ATPase components 100.0 7.7E-31 1.7E-35 301.0 21.6 207 381-608 3-241 (530)
363 COG0396 sufC Cysteine desulfur 100.0 1.8E-30 3.9E-35 257.7 20.8 215 381-607 3-233 (251)
364 COG4674 Uncharacterized ABC-ty 100.0 3.2E-31 7E-36 255.1 14.5 214 381-608 5-236 (249)
365 KOG0064 Peroxisomal long-chain 100.0 3.5E-26 7.6E-31 248.3 48.1 440 127-588 179-678 (728)
366 COG4107 PhnK ABC-type phosphon 100.0 6.3E-30 1.4E-34 241.1 16.0 228 381-619 6-253 (258)
367 cd03270 ABC_UvrA_I The excisio 100.0 6.5E-30 1.4E-34 267.5 16.9 192 396-600 7-226 (226)
368 cd03271 ABC_UvrA_II The excisi 100.0 5.1E-30 1.1E-34 270.8 13.9 193 399-602 10-261 (261)
369 COG0488 Uup ATPase components 100.0 9.4E-29 2E-33 283.8 24.3 203 380-608 320-526 (530)
370 COG4586 ABC-type uncharacteriz 100.0 3.2E-29 7E-34 253.5 14.0 201 398-608 38-247 (325)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 7E-29 1.5E-33 253.7 13.7 164 401-593 14-190 (197)
372 COG4133 CcmA ABC-type transpor 100.0 4.3E-28 9.4E-33 233.4 14.2 188 383-585 4-196 (209)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.4E-28 7.4E-33 252.5 12.6 192 381-596 5-211 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.3E-27 4.9E-32 251.9 13.6 191 382-592 4-234 (243)
375 COG4778 PhnL ABC-type phosphon 99.9 2.1E-27 4.7E-32 223.5 9.4 202 381-592 4-226 (235)
376 KOG0059 Lipid exporter ABCA1 a 99.9 2.4E-26 5.2E-31 283.0 17.2 216 380-608 563-788 (885)
377 PF00664 ABC_membrane: ABC tra 99.9 8.7E-23 1.9E-27 217.7 39.9 272 60-335 3-275 (275)
378 cd03240 ABC_Rad50 The catalyti 99.9 7.5E-26 1.6E-30 232.8 12.9 163 403-593 16-197 (204)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-25 2.2E-30 240.1 12.4 181 410-592 25-242 (251)
380 PRK00349 uvrA excinuclease ABC 99.9 5.6E-25 1.2E-29 267.4 19.1 97 514-610 824-930 (943)
381 PRK00635 excinuclease ABC subu 99.9 7E-25 1.5E-29 276.3 20.3 212 381-608 600-907 (1809)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.3E-26 7.1E-31 236.6 6.9 185 381-593 5-204 (212)
383 COG4138 BtuD ABC-type cobalami 99.9 1.1E-25 2.5E-30 212.8 6.3 208 382-608 4-222 (248)
384 KOG0927 Predicted transporter 99.9 3.7E-25 7.9E-30 242.6 10.8 194 380-598 388-586 (614)
385 KOG0065 Pleiotropic drug resis 99.9 9.5E-25 2.1E-29 261.7 13.3 199 396-604 803-1018(1391)
386 COG1129 MglA ABC-type sugar tr 99.9 4.2E-24 9.2E-29 239.1 17.7 213 381-604 263-487 (500)
387 TIGR00630 uvra excinuclease AB 99.9 1.6E-23 3.5E-28 254.3 20.1 92 514-605 822-923 (924)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.5E-24 5.4E-29 228.7 10.8 183 411-593 23-233 (247)
389 COG3845 ABC-type uncharacteriz 99.9 3.8E-22 8.2E-27 218.6 20.1 216 380-604 256-489 (501)
390 KOG0927 Predicted transporter 99.9 7.3E-22 1.6E-26 216.9 17.8 218 379-608 73-310 (614)
391 KOG0062 ATPase component of AB 99.9 1.1E-21 2.3E-26 214.5 16.4 209 380-621 361-575 (582)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.9 7.2E-22 1.6E-26 202.1 13.5 172 400-595 12-192 (198)
393 KOG0066 eIF2-interacting prote 99.9 1.2E-21 2.5E-26 208.3 14.6 192 381-598 586-781 (807)
394 cd03239 ABC_SMC_head The struc 99.9 1.6E-21 3.6E-26 195.8 14.0 85 503-593 83-172 (178)
395 cd01128 rho_factor Transcripti 99.9 2.2E-21 4.8E-26 203.8 12.6 199 405-621 11-230 (249)
396 COG1245 Predicted ATPase, RNas 99.8 9.5E-21 2.1E-25 203.7 14.5 178 386-593 340-531 (591)
397 KOG0062 ATPase component of AB 99.8 3.4E-21 7.3E-26 210.6 7.7 201 379-608 78-286 (582)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.4E-20 7.4E-25 191.7 10.3 180 401-595 15-211 (213)
399 KOG0065 Pleiotropic drug resis 99.8 4.1E-20 8.8E-25 222.2 11.5 206 397-607 128-351 (1391)
400 cd03241 ABC_RecN RecN ATPase i 99.8 1.9E-19 4.2E-24 194.2 14.9 77 520-596 170-250 (276)
401 COG4170 SapD ABC-type antimicr 99.8 2E-19 4.2E-24 175.2 10.8 211 397-617 20-258 (330)
402 cd03280 ABC_MutS2 MutS2 homolo 99.8 3.7E-19 8E-24 182.9 11.1 144 400-599 17-171 (200)
403 PRK00635 excinuclease ABC subu 99.8 3.1E-18 6.8E-23 216.8 20.3 209 400-609 1506-1798(1809)
404 KOG2355 Predicted ABC-type tra 99.8 3E-18 6.4E-23 166.7 14.8 208 379-605 11-235 (291)
405 COG0178 UvrA Excinuclease ATPa 99.8 3.6E-18 7.8E-23 195.8 18.0 95 514-608 816-920 (935)
406 COG2401 ABC-type ATPase fused 99.8 3.1E-18 6.6E-23 182.3 14.5 200 376-597 352-588 (593)
407 COG1245 Predicted ATPase, RNas 99.7 4.6E-18 9.9E-23 183.3 11.3 190 386-592 79-287 (591)
408 cd03227 ABC_Class2 ABC-type Cl 99.7 1.1E-17 2.4E-22 166.0 13.4 135 404-593 15-155 (162)
409 cd03242 ABC_RecF RecF is a rec 99.7 1.3E-16 2.8E-21 171.8 15.4 190 400-596 12-269 (270)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.7 4.6E-17 1E-21 169.4 11.0 152 397-601 17-175 (222)
411 cd00820 PEPCK_HprK Phosphoenol 99.7 3.7E-17 8.1E-22 147.4 5.6 75 398-480 3-77 (107)
412 TIGR00630 uvra excinuclease AB 99.7 2.2E-16 4.8E-21 192.4 14.0 95 514-608 481-584 (924)
413 PRK00349 uvrA excinuclease ABC 99.7 2.6E-16 5.7E-21 192.1 13.9 95 514-608 483-586 (943)
414 KOG0058 Peptide exporter, ABC 99.7 8.8E-15 1.9E-19 167.9 23.9 178 681-861 132-309 (716)
415 TIGR00606 rad50 rad50. This fa 99.6 5.7E-16 1.2E-20 199.7 13.2 118 469-591 1153-1288(1311)
416 cd03243 ABC_MutS_homologs The 99.6 8.6E-16 1.9E-20 158.3 10.4 153 403-605 22-177 (202)
417 cd03283 ABC_MutS-like MutS-lik 99.6 3.8E-16 8.3E-21 159.8 7.3 138 397-585 14-154 (199)
418 TIGR02858 spore_III_AA stage I 99.6 2.4E-15 5.3E-20 159.9 12.3 142 411-606 112-268 (270)
419 PRK00064 recF recombination pr 99.5 1.8E-13 3.9E-18 153.1 17.9 76 519-596 272-359 (361)
420 KOG0066 eIF2-interacting prote 99.5 1.9E-14 4.1E-19 153.8 7.5 197 381-603 264-495 (807)
421 cd03284 ABC_MutS1 MutS1 homolo 99.5 4.2E-14 9.1E-19 146.8 9.4 154 397-605 18-179 (216)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.1E-13 2.4E-18 142.0 11.4 140 397-586 16-158 (204)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 6.7E-14 1.4E-18 146.3 9.5 73 520-592 136-212 (220)
424 KOG0063 RNAse L inhibitor, ABC 99.5 2.6E-13 5.6E-18 145.6 12.5 182 388-593 342-532 (592)
425 PHA02562 46 endonuclease subun 99.5 7.9E-14 1.7E-18 166.5 9.4 105 490-596 433-555 (562)
426 PRK07721 fliI flagellum-specif 99.3 2.3E-11 5E-16 137.7 17.4 177 397-604 146-340 (438)
427 PTZ00132 GTP-binding nuclear p 99.3 3.4E-12 7.3E-17 132.9 6.5 44 524-567 156-204 (215)
428 TIGR00634 recN DNA repair prot 99.3 7.2E-12 1.6E-16 148.5 9.8 77 519-595 439-519 (563)
429 PRK10869 recombination and rep 99.3 1.3E-11 2.7E-16 145.1 10.2 77 519-595 429-509 (553)
430 smart00534 MUTSac ATPase domai 99.2 1.2E-11 2.6E-16 125.5 8.2 79 515-596 56-139 (185)
431 cd03281 ABC_MSH5_euk MutS5 hom 99.2 4.4E-11 9.6E-16 123.9 12.0 135 398-585 17-160 (213)
432 PRK13695 putative NTPase; Prov 99.2 1.2E-11 2.6E-16 124.3 6.7 82 515-599 73-156 (174)
433 TIGR00958 3a01208 Conjugate Tr 99.2 1.3E-09 2.8E-14 133.4 25.2 174 682-859 147-320 (711)
434 PRK14079 recF recombination pr 99.2 2.3E-10 5E-15 127.4 16.9 76 519-599 262-346 (349)
435 PF00664 ABC_membrane: ABC tra 99.2 1.1E-09 2.4E-14 116.4 21.3 109 751-861 54-162 (275)
436 TIGR01069 mutS2 MutS2 family p 99.2 1.4E-10 3E-15 140.7 14.4 144 381-581 295-447 (771)
437 PRK11174 cysteine/glutathione 99.2 5.2E-09 1.1E-13 125.8 26.1 171 685-858 11-181 (588)
438 TIGR02788 VirB11 P-type DNA tr 99.1 7.8E-11 1.7E-15 129.2 8.8 143 403-606 137-280 (308)
439 KOG0063 RNAse L inhibitor, ABC 99.1 5.7E-11 1.2E-15 127.9 7.2 171 408-592 98-287 (592)
440 cd03287 ABC_MSH3_euk MutS3 hom 99.1 2.4E-10 5.2E-15 118.6 9.8 138 397-585 18-160 (222)
441 COG0178 UvrA Excinuclease ATPa 99.1 5.1E-10 1.1E-14 129.7 11.9 111 501-612 463-582 (935)
442 PRK10790 putative multidrug tr 99.1 1.5E-08 3.2E-13 121.9 25.1 114 743-858 70-183 (592)
443 TIGR02857 CydD thiol reductant 99.1 1.9E-08 4.1E-13 119.4 25.2 158 698-858 5-162 (529)
444 PRK08533 flagellar accessory p 99.1 1.1E-09 2.4E-14 114.9 12.9 145 406-592 20-184 (230)
445 TIGR02203 MsbA_lipidA lipid A 99.1 1.7E-08 3.7E-13 120.9 24.9 171 687-861 5-175 (571)
446 PRK11160 cysteine/glutathione 99.0 3.1E-08 6.7E-13 118.5 25.3 110 744-855 66-175 (574)
447 TIGR02868 CydC thiol reductant 99.0 3.5E-08 7.7E-13 117.0 25.1 109 747-857 62-170 (529)
448 PRK01156 chromosome segregatio 99.0 6.3E-10 1.4E-14 140.0 10.2 76 517-592 798-883 (895)
449 TIGR03238 dnd_assoc_3 dnd syst 99.0 2E-10 4.4E-15 128.3 4.7 67 398-467 20-87 (504)
450 PRK00409 recombination and DNA 99.0 5.9E-10 1.3E-14 135.6 9.1 82 514-597 384-468 (782)
451 TIGR01192 chvA glucan exporter 99.0 4.7E-08 1E-12 117.1 25.2 168 685-859 8-175 (585)
452 TIGR01194 cyc_pep_trnsptr cycl 99.0 3E-08 6.6E-13 118.0 23.3 165 684-858 5-170 (555)
453 cd01124 KaiC KaiC is a circadi 99.0 1.8E-09 3.8E-14 109.7 10.2 81 512-592 63-163 (187)
454 TIGR01193 bacteriocin_ABC ABC- 99.0 6.6E-08 1.4E-12 118.7 25.2 115 742-859 200-314 (708)
455 PRK03918 chromosome segregatio 99.0 1.1E-09 2.3E-14 138.0 9.5 75 519-593 787-868 (880)
456 PRK13830 conjugal transfer pro 98.9 1.9E-09 4.1E-14 132.8 10.3 68 535-602 649-728 (818)
457 cd01131 PilT Pilus retraction 98.9 1.5E-09 3.4E-14 111.3 7.7 119 412-592 3-122 (198)
458 TIGR01846 type_I_sec_HlyB type 98.9 1.3E-07 2.8E-12 115.9 25.5 117 740-859 181-297 (694)
459 TIGR00618 sbcc exonuclease Sbc 98.9 2.3E-09 5E-14 136.3 10.1 77 518-594 948-1036(1042)
460 PRK10522 multidrug transporter 98.9 8.6E-08 1.9E-12 114.1 22.6 110 746-858 56-165 (547)
461 TIGR02168 SMC_prok_B chromosom 98.9 1.6E-09 3.4E-14 141.0 7.7 75 517-591 1086-1164(1179)
462 TIGR02204 MsbA_rel ABC transpo 98.9 1.9E-07 4.2E-12 112.0 25.0 116 741-858 61-176 (576)
463 TIGR00767 rho transcription te 98.9 3.6E-09 7.8E-14 116.6 9.2 83 347-437 102-195 (415)
464 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 1.9E-07 4.2E-12 114.7 24.6 117 741-860 197-313 (710)
465 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 2.8E-07 6.1E-12 112.8 25.1 115 741-858 179-293 (686)
466 PRK10733 hflB ATP-dependent me 98.9 4.9E-10 1.1E-14 134.4 0.7 164 237-435 39-210 (644)
467 smart00382 AAA ATPases associa 98.9 1.1E-07 2.3E-12 90.6 16.7 117 409-578 1-125 (148)
468 PRK06793 fliI flagellum-specif 98.8 1.2E-08 2.7E-13 114.7 11.3 168 382-602 131-306 (432)
469 cd01120 RecA-like_NTPases RecA 98.8 1.8E-08 4E-13 99.3 11.1 129 412-582 1-140 (165)
470 PRK00300 gmk guanylate kinase; 98.8 3.2E-09 6.8E-14 109.7 5.5 69 408-482 3-83 (205)
471 COG1132 MdlB ABC-type multidru 98.8 4.9E-07 1.1E-11 108.2 24.8 121 739-861 53-173 (567)
472 TIGR02169 SMC_prok_A chromosom 98.8 5.8E-09 1.3E-13 135.5 8.2 75 519-593 1073-1151(1164)
473 COG2274 SunT ABC-type bacterio 98.8 7.4E-07 1.6E-11 107.0 24.4 121 740-863 196-316 (709)
474 PRK11176 lipid transporter ATP 98.8 8.5E-07 1.9E-11 106.6 24.6 113 744-858 71-183 (582)
475 TIGR03375 type_I_sec_LssB type 98.8 1.1E-06 2.3E-11 107.9 25.8 114 743-860 192-305 (694)
476 PRK13657 cyclic beta-1,2-gluca 98.8 1E-06 2.2E-11 106.0 25.1 105 753-859 71-175 (588)
477 PRK10789 putative multidrug tr 98.7 6.2E-07 1.4E-11 107.2 22.3 117 740-858 38-155 (569)
478 PRK06067 flagellar accessory p 98.7 1E-07 2.2E-12 100.7 13.5 152 406-593 21-187 (234)
479 cd03286 ABC_MSH6_euk MutS6 hom 98.7 7.2E-08 1.6E-12 99.9 11.1 130 397-585 17-159 (218)
480 PF06472 ABC_membrane_2: ABC t 98.7 5.2E-05 1.1E-09 82.2 33.8 210 68-287 39-255 (281)
481 PF13304 AAA_21: AAA domain; P 98.7 4.4E-08 9.5E-13 103.9 9.7 64 519-582 235-302 (303)
482 PRK10246 exonuclease subunit S 98.7 4E-08 8.6E-13 124.5 9.8 76 518-593 947-1032(1047)
483 PRK02224 chromosome segregatio 98.7 3.2E-08 6.9E-13 124.6 8.4 76 519-594 780-869 (880)
484 TIGR00954 3a01203 Peroxysomal 98.6 7.5E-07 1.6E-11 107.9 19.0 117 741-860 142-259 (659)
485 PRK11098 microcin B17 transpor 98.6 0.0007 1.5E-08 76.1 38.4 217 127-361 160-395 (409)
486 PRK06002 fliI flagellum-specif 98.6 1.2E-07 2.5E-12 107.0 7.9 84 380-466 138-228 (450)
487 PRK12369 putative transporter; 98.6 0.0013 2.8E-08 72.5 39.2 223 126-361 84-321 (326)
488 cd01130 VirB11-like_ATPase Typ 98.5 1.7E-07 3.7E-12 95.3 7.0 79 399-480 14-95 (186)
489 PRK01889 GTPase RsgA; Reviewed 98.5 1E-07 2.3E-12 106.4 5.3 81 400-483 185-265 (356)
490 COG3910 Predicted ATPase [Gene 98.5 1.5E-06 3.3E-11 84.8 12.5 162 411-605 38-214 (233)
491 PRK07196 fliI flagellum-specif 98.5 1.3E-07 2.7E-12 106.8 5.2 80 398-478 144-233 (434)
492 TIGR01420 pilT_fam pilus retra 98.5 6.9E-07 1.5E-11 99.6 10.9 123 407-591 119-242 (343)
493 PRK13891 conjugal transfer pro 98.5 3E-06 6.4E-11 105.3 17.5 55 531-585 680-736 (852)
494 PRK06995 flhF flagellar biosyn 98.4 3.9E-07 8.5E-12 104.2 8.4 142 401-577 247-400 (484)
495 PF09818 ABC_ATPase: Predicted 98.4 3.8E-06 8.3E-11 93.1 15.3 170 387-595 227-415 (448)
496 TIGR00611 recf recF protein. A 98.4 2.4E-07 5.2E-12 103.8 6.1 63 519-583 274-345 (365)
497 cd01125 repA Hexameric Replica 98.4 2.4E-07 5.2E-12 98.2 4.3 46 534-580 107-160 (239)
498 TIGR02655 circ_KaiC circadian 98.4 9.2E-08 2E-12 111.5 1.0 155 406-592 17-190 (484)
499 PF13748 ABC_membrane_3: ABC t 98.3 0.0017 3.8E-08 66.5 30.6 149 67-234 21-170 (237)
500 TIGR00101 ureG urease accessor 98.3 1.2E-06 2.5E-11 90.0 6.6 103 412-525 3-108 (199)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-143 Score=1273.40 Aligned_cols=821 Identities=50% Similarity=0.809 Sum_probs=734.0
Q ss_pred cchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002817 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (876)
Q Consensus 40 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (876)
..++.+++++..+.++.++.+|.+++++.++.+|++.+++|++++.+..... . ...+.+..+++.+++++++.++..|
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~lg~~~~~~~~ 89 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN-K-IASSEVSKVALYFVYLGVGVFISGF 89 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999865331 1 2224667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (876)
Q Consensus 120 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (876)
++..||.+.++|+..++|..++++++||+++|||.+ .+|++.+++++|++.++++++++++.+++.+.+++.+++++|+
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999995 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 002817 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (876)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (876)
+.|+|+++++.+.|++++.+..+.+.+.+...+.+++++++.++++|++++||||.+|+.|+.+.++|++..+...+...
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 002817 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (876)
Q Consensus 280 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l 359 (876)
|.+++.++..++..++.+.++++.+|||+.++..+..++|++++++++++.....+++..|.+..+..|++|+.+|++.+
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 002817 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (876)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G 439 (876)
++.|.++.....+......+|.|+|+||+|+||+||+.++|+|+||+||+||++||||||||||||+++||.|||+|++|
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 99888766443333445577999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCC
Q 002817 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (876)
Q Consensus 440 ~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~ 519 (876)
+|+|||.|+++++.+|||++||+|+|||.||++||+|||+||+|+++.+++++||+++++|+||.+||+||||.|||+|.
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
+|||||||||||||||++||+||||||||||||+++|+.||++|++.++|||+|+||||||||++||+|+||++|+|+|.
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCccccCCCCccchhhhcccCCCCC-CCccc
Q 002817 600 GSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADA-TEPAT 678 (876)
Q Consensus 600 Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~ 678 (876)
|+|+||++. +|.|.+|++.|+....++..++.++...... ..........+...............+++... ....+
T Consensus 569 G~h~ELi~~-~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~-~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 646 (1228)
T KOG0055|consen 569 GTHDELIAL-GGIYSSLVRLQELEKAAEDEEEEESLKEERS-RSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEE 646 (1228)
T ss_pred cCHHHHHhc-cchHHHHHHHHhhhhhhhccccccchhhhhh-hccccccccccccCCccccccccccccccccccccccc
Confidence 999999998 5999999999976654332111000000000 00000000000000000000000000000000 00011
Q ss_pred cccchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002817 679 AKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQREVKKITILFCCAAVITVIVHAI 757 (876)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~i~~~~ 757 (876)
....++++++++++|+|+|+.+|++++++.|+.+|++++.+++++..+.. +++........|+++|+++|++++++.++
T Consensus 647 ~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~ 726 (1228)
T KOG0055|consen 647 DEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFL 726 (1228)
T ss_pred cccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15678999999999999999999999999999999999999999999985 44444555556999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 758 EHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFI 837 (876)
Q Consensus 758 ~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~ 837 (876)
++++|+++|+++++|+|.+||++++|+|++|||+|+|+ |+|.+|+++|...++..+++.++.+++++.+++++++++++
T Consensus 727 q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 727 QHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002817 838 LNWRITLVVVATYPLIISGHIKTLLSRLW 866 (876)
Q Consensus 838 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~ 866 (876)
++|++++++++++|+++++++.+.+....
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~ 834 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKG 834 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988866543
No 2
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-122 Score=1037.80 Aligned_cols=574 Identities=40% Similarity=0.615 Sum_probs=534.9
Q ss_pred hHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (876)
Q Consensus 42 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (876)
.+++++.++++. |..+..+.++.++......+.|.++|+++|.+.... +........+..+.++.++..++.+++
T Consensus 134 ~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~----~~~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 134 LLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD----DSADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899998765 445556666666666666677788999999876411 112334456677777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (876)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (876)
.+++.+.++++..++|..+|+++++|+++|||.+ .+||++||++.|+..+.+.++..+...+.++++.++++++|++++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999999999999994 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 002817 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (876)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 281 (876)
|+|++++++.+|+++++..++++..++.+++.|+..+++++.++|.+++|||||+|+.|+.+.+||.+..++..+..+|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
+...+++.....+...+..+.+++||++++..|.+|+|.+.++++|......++..+...++.++++..|.+|+++++|+
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
+|..+.. +...+....|.|+|+||+|+||++|+.+||+|+||+|+|||+||+||||||||||+++||+|||+|++|+|
T Consensus 448 ~P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 9886542 21222357799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
++||+||+++|.++||++||+|.|||.||++||+|||+||.+++++|||.+||++|++||||.++|+||||.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
||||||||||||||+|||.||||||||||||+++|..||++|++.+++||||+|||||||+++||+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHHHh
Q 002817 602 HEELISNPNSAYAALVQLQEAA 623 (876)
Q Consensus 602 ~~eL~~~~~g~y~~l~~~~~~~ 623 (876)
|+||+++++|.|++|++.|...
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHhhCcccHHHHHHHHhccc
Confidence 9999999779999999988643
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.8e-118 Score=1058.12 Aligned_cols=579 Identities=43% Similarity=0.709 Sum_probs=546.7
Q ss_pred hcchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002817 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (876)
Q Consensus 39 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (876)
...++++++++.++ +|.++++|++++++.|+..|++.+++++++..+... +++........+++++++++++.+++.
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~--~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP--DDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999876 688889999999999999999999999999987532 112222233347888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002817 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (876)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (876)
+++++++.+.++++..|+|...|+++++++++|||...++|.+.+|+.+|...++..+++.+..+++++..++.+++++|
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999855559999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 002817 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (876)
Q Consensus 199 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (876)
+++|+|+++++++.|++++..+...+.+.....+..+...+++.++.|+++|||||++|+.|+++.+.|.+..++..+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002817 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (876)
Q Consensus 279 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~ 358 (876)
.|.+.+.++.+++.+++.++.+++.+|||++++.+|.+++.++|.++..+.+....+++.....+++.+|+.|+.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888889889999999999999999999
Q ss_pred hccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 002817 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438 (876)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~ 438 (876)
++++|.++...+.+...++.+|+|+|+||+|+||++|+.+||+|+||+|++||++|+||||||||||++.||.|||||++
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99998776544344445677899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC
Q 002817 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (876)
Q Consensus 439 G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G 518 (876)
|.|.|||+||++++++|||++||.|+|||.||++||||||+||.++++++||++||++|++|+||.+||+||||.|||||
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999997669999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEE
Q 002817 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 598 (876)
.+||||||||||||||++|||+||||||||||||+++|+.||++|++.+.|||+|+|||||||+++||.|+|++||+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHH
Q 002817 599 TGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 599 ~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
+|||+||+++ +|.|++|++.|.
T Consensus 1205 ~GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred cccHHHHHhC-CCchHHHhhhcc
Confidence 9999999997 999999998774
No 4
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9e-117 Score=1073.15 Aligned_cols=782 Identities=21% Similarity=0.284 Sum_probs=612.1
Q ss_pred hcchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002817 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (876)
Q Consensus 39 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (876)
+.+++.+.+..++++.....++..++.....++.|. ++..+++.+.... .....++.++++.++..+..
T Consensus 187 ~~psl~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~---lL~~li~~~~~~~--------~~~~~g~~~a~~lf~~~~l~ 255 (1381)
T KOG0054|consen 187 KKPSLLRALLRTFGRTFLLSGIFLFLRDLAGFVGPL---LLKKLILFFSEKR--------LPLNNGYLLAVLLFLASLLQ 255 (1381)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHH---HHHHHHHHhcCCC--------cccchhHHHHHHHHHHHHHH
Confidence 455677776666666555544444444444677774 5778888764321 01112333344334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcC---CChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002817 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTE---ASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI 195 (876)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~---~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 195 (876)
.+....+.+...+.+.++|.++...++++.+...... .++|+++|.+++|+++++++. .+++.+|..+..++
T Consensus 256 ~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~ 330 (1381)
T KOG0054|consen 256 SLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQII 330 (1381)
T ss_pred HHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 4445567788999999999999888888877665432 378999999999999999987 69999999999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 002817 196 IGFARVWQI----SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEAL 271 (876)
Q Consensus 196 ~~~~~~~~l----~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~ 271 (876)
++.++.|++ +++.++++.+++.+..+..++.++..++..+..++..+.++|.++|||+||+|+||+.|.+++++.|
T Consensus 331 ~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R 410 (1381)
T KOG0054|consen 331 LALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLR 410 (1381)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHH
Confidence 999999874 4444445555666777788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002817 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV-VHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (876)
Q Consensus 272 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (876)
++|.+..+|..+++++...+..+.+.++ .++.++.+. ..++.+|+..+|+++.+++++..|+..+|..+..+.++.+
T Consensus 411 ~~El~~lrk~~~~~~~~~~~~~~~p~lv--~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~V 488 (1381)
T KOG0054|consen 411 QKELKLLRKSAYLSALNSFLNFFSPVLV--SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKV 488 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877777665 344455555 5577899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHH
Q 002817 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (876)
Q Consensus 351 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL 430 (876)
|.+|+.+++..++....... ..+..+.+..|+++|.+|+|++..+.+.|+||||+|++|+++|||||+|||||||+++|
T Consensus 489 S~~Ri~~fl~~~e~~~~~~~-~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054|consen 489 SLKRLKEFLLSEELDPDSVE-RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred HHHHHHHHhcCcccCccccc-cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999987765332111 01222334579999999999864345699999999999999999999999999999999
Q ss_pred HcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCch
Q 002817 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPE 508 (876)
Q Consensus 431 ~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~ 508 (876)
+|++++.+|+|.++|. +|||||+||||||||||||+||.| +..|+++++||.+..+ ++.||+
T Consensus 568 LGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~D---le~Lp~ 631 (1381)
T KOG0054|consen 568 LGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKD---LEILPF 631 (1381)
T ss_pred hcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhH---HhhcCC
Confidence 9999999999999995 999999999999999999999984 5677888888877666 888999
Q ss_pred hhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEcCCchhhhhcCE
Q 002817 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADV 587 (876)
Q Consensus 509 G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~aD~ 587 (876)
||.|+|||||.||||||||||+||||+|+|+||||||||+||||+|+.++| ++||++.+++||+|+|||+++++++||+
T Consensus 632 GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~ 711 (1381)
T KOG0054|consen 632 GDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQ 711 (1381)
T ss_pred CCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCE
Confidence 999999999999999999999999999999999999999999999988888 9999999999999999999999999999
Q ss_pred EEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCccccCCCCccch--hhh
Q 002817 588 IAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEK--ESV 665 (876)
Q Consensus 588 Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 665 (876)
|+||+||+|+++|||+||++. ++.|.++......+..........+ .+ ........ +.....+...+. +..
T Consensus 712 Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~~~~ 784 (1381)
T KOG0054|consen 712 IIVLKDGKIVESGTYEELLKS-GGDFAELAHEEESEQEEEASEKDLE--SG---ESSRESES-RSLESLSSEEEKSKDEK 784 (1381)
T ss_pred EEEecCCeEecccCHHHHHhc-chhHHHHhhccchhhcccccccccc--cc---ccccchhh-hhhhhhccccccccccc
Confidence 999999999999999999987 7888888443332222110000000 00 00000000 000000000000 000
Q ss_pred cccCCCCCCCccccccchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh--------hhh
Q 002817 666 LSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQ--------REV 737 (876)
Q Consensus 666 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--------~~~ 737 (876)
..+++...+|+++.|.+++ +.|+.|+..+.....+...++..+..++.+...++|+.+|... ...
T Consensus 785 ~~~~~~~~~ee~~~G~v~~-------~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~ 857 (1381)
T KOG0054|consen 785 EEEDKLVQEEERETGKVSW-------SVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVST 857 (1381)
T ss_pred chhhHHHHHHHHhcCEeeH-------HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 0011112234455666663 4557787764333333333344455566777777887544322 245
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHH
Q 002817 738 KKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDR 817 (876)
Q Consensus 738 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~ 817 (876)
..+.++|.+++++..++.+++++.+...|.++|++||++|+++|+|+||+||| +||+|||+||||||++.+|..+|..
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~ 935 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFT 935 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHH
Confidence 57899999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHH
Q 002817 818 STILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHI-KTLLSRLWRQLEQ 871 (876)
Q Consensus 818 l~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~-~~~~~~~~~~~~~ 871 (876)
+..+++++..++++++++++++|+++++++|+..+++.... +....|..+|||.
T Consensus 936 ~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 936 LEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999998888877777776544 5567788888874
No 5
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5e-107 Score=1033.65 Aligned_cols=809 Identities=26% Similarity=0.447 Sum_probs=669.4
Q ss_pred hcchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002817 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (876)
Q Consensus 39 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (876)
.+.+++++|+|+.+.++.+++++++++++.+++.|++++++|.++|.+... ..+...++.+++++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--------~~~~~~~~~~~~~~i~~~~~~ 114 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILS 114 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHH
Confidence 445799999999988888889999999999999999999999999976321 112233455666777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002817 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (876)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (876)
+++.+++.+.++++..++|.++|++++++|++|||.. ++|++++++++|++.+++.++..+..++..+++++++++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999984 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 002817 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (876)
Q Consensus 199 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (876)
+++|.|++++++++|+++++..++.++.++..++.++..++.++.++|+++|+++||+|+.|+.+.++|++..+...+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002817 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH--------ISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (876)
Q Consensus 279 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (876)
.|...+.++..++..++.++++++++|+|++++..| .+++|.+++++++.+....++..+.+.+..++.+.+
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888888888999999999999875 578999888877776666677777888999999999
Q ss_pred HHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHH
Q 002817 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (876)
Q Consensus 351 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL 430 (876)
|++|++++++.+++.++ ...+...+.. +.|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus 354 a~~ri~~ii~~~~~~~~-~~~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVEN-NDDGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHHHcCCCCCCC-CCCCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999998765432 1111222222 479999999999876556799999999999999999999999999999999
Q ss_pred HcCCCCCccEEEE-CCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCC--------------------------
Q 002817 431 ERFYEPLSGEILL-DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-------------------------- 483 (876)
Q Consensus 431 ~~~~~p~~G~I~i-dG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~-------------------------- 483 (876)
+|+|+|++|+|.+ ||+|+++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 6799999999999999999999999999999999999841
Q ss_pred -------------------------------CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 484 -------------------------------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 484 -------------------------------~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+++++++++||+.+++++||.+||+||||.+|++|.+|||||||||+||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCC----------------
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGR---------------- 594 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G---------------- 594 (876)
||++++|+|||||||||+||+++|+.|++.|+++. +|+|+|+||||+++++.||+|+||++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999886 489999999999999999999999986
Q ss_pred -------------------------------eEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCC-CCCCC---CCCc
Q 002817 595 -------------------------------KIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSS-QCPNM---GRPL 639 (876)
Q Consensus 595 -------------------------------~Ive~Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~~~-~~~~~---~~~~ 639 (876)
+|+|+|||+||++..+|.|+.|++.|.........+ ..... ....
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~ 751 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAY 751 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccc
Confidence 599999999999844899999998875432211000 00000 0000
Q ss_pred cccc-c---ccccC---Ccccc-C-CCCccchhhh-cccCCC-CC---CC---ccccccchHHHHHHhcccchHHHHHHH
Q 002817 640 SIKF-S---RELSG---TRTSF-G-ASFRSEKESV-LSHGAA-DA---TE---PATAKHVSAIKLYSMVRPDWTYGVCGT 702 (876)
Q Consensus 640 ~~~~-~---~~~~~---~~~~~-~-~~~~~~~~~~-~~~~~~-~~---~e---~~~~~~~~~~~~~~~~~~~~~y~~~~~ 702 (876)
.... . ..... .+... . .......++. ...... .. ++ ..........++++..+++++.+..++
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1466)
T PTZ00265 752 KDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIA 831 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00000 00000 0 0000000000 000000 00 00 000111133445555556666677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 703 ICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782 (876)
Q Consensus 703 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il 782 (876)
+++++.++..|++.+++++++..++.. .........|++++++++++.+++.+++.+++.++++++..+||.++|++++
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll 910 (1466)
T PTZ00265 832 LSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENIL 910 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998776532 1122334567888889999999999999999999999999999999999999
Q ss_pred hCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002817 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIK 859 (876)
Q Consensus 783 ~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~ 859 (876)
++|++|||++.+++|++++|+++|++.+...+...+..++..++.++++++++++++|++++++++++|++......
T Consensus 911 ~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 987 (1466)
T PTZ00265 911 YQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987 (1466)
T ss_pred cCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999777999999999999999999999999999999999999999999999999999888776666544333
No 6
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.4e-103 Score=920.59 Aligned_cols=566 Identities=31% Similarity=0.452 Sum_probs=515.3
Q ss_pred hHHHHHHhhchhHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFADFYDYI--LMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (876)
Q Consensus 42 ~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (876)
.+.+++....+++.. .+++..++..+.+++.| +++..++|.+.... ..+.+...++.+++.++...++.+
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p---~~~q~viD~Vl~~~-----~~~tL~vl~ig~~~~~l~~~~l~~ 212 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATP---LFSQIVIDKVLPDA-----SRSTLTVLAIGLLLAALFEALLRL 212 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccC-----chhHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544443332 33444455555666666 45677899876432 234444556666777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (876)
Q Consensus 120 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (876)
++.+...+.+.|+..++-.++++|++++|++||+++ ++|++++|+ +|.++|+++++..+...+.++..+++.++++++
T Consensus 213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ 290 (709)
T COG2274 213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFL 290 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984 999999998 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 002817 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (876)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (876)
++|.|++++++.+|+++++..++.+..++..++..+..++.++.+.|+++||++||+.+.|.++..+|++...+..+...
T Consensus 291 ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~ 370 (709)
T COG2274 291 YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 002817 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (876)
Q Consensus 280 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l 359 (876)
|..........+..++..++.++++|+|++++.+|.+|.|.++++.........|+..+...+..+++++.+.+|+.+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil 450 (709)
T COG2274 371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL 450 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888889999999999999999999999999999999887777778899999999999999999999999999
Q ss_pred ccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 002817 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (876)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G 439 (876)
+.+++.+... .....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|
T Consensus 451 ~~~~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 451 DTPPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred cCCccccccc-ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 9987743321 123445677999999999999865 34799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCC
Q 002817 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (876)
Q Consensus 440 ~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~ 519 (876)
+|++||.|+.++++++||++||||+||+.||+|||+|||++|+|++++||+++||++|++||||+++|+||||+|||+|.
T Consensus 529 ~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
+|||||||||+||||+++||+||||||||||||+++|+.|.+.|.+..++||+|+||||++++++||+|+|||+|+|+|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHH
Q 002817 600 GSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 600 Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
|||+||++. +|.|+++++.|
T Consensus 689 gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 689 GSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred CCHHHHHHh-cChHHHHHhcc
Confidence 999999998 99999999765
No 7
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-99 Score=974.29 Aligned_cols=686 Identities=19% Similarity=0.223 Sum_probs=517.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 002817 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW-QI 204 (876)
Q Consensus 126 ~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 204 (876)
...+.++...+|..+|+|+++++..++++ .++|+++|++++|++++++++ ..+ +.++..++.+++++++.| .+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~-~~l----~~l~~~pl~ii~~~~lL~~~l 439 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQIC-QQL----HTLWSAPFRIIIAMVLLYQQL 439 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677778999999999999887 489999999999999999987 333 444444443333333222 23
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 002817 205 SLVTLSI---VPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (876)
Q Consensus 205 ~l~~l~~---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 281 (876)
+++.++. +.+++.+..++.++.++..++.++..++..+.++|.++||++||+|+||+.+.+++++.++++.+..++.
T Consensus 440 g~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~ 519 (1622)
T PLN03130 440 GVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKA 519 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 2233444556677777888888888899999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
....++...+....+. .+.++++|++++.+|.+|+|.+|+++.++..+..|+..++..+..+.+++++++|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~ 597 (1622)
T PLN03130 520 QLLSAFNSFILNSIPV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLA 597 (1622)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8777765544333332 24566788898889999999999998888888999999999999999999999999999986
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCc-cE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-GE 440 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~-G~ 440 (876)
++...... .......+.|+|+||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+
T Consensus 598 ~e~~~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~ 674 (1622)
T PLN03130 598 EERVLLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674 (1622)
T ss_pred cccccccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCce
Confidence 54321111 011112347999999999986545679999999999999999999999999999999999999999 99
Q ss_pred EEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 441 I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
|.+.| +|+||+|+||||+|||||||+||+| .+++++.+|++.++++++++.||+||+|+|||+|.+
T Consensus 675 I~l~~-------------~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~ 740 (1622)
T PLN03130 675 VVIRG-------------TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740 (1622)
T ss_pred EEEcC-------------eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC
Confidence 98766 6999999999999999999999987 578999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
||||||||||||||+|+|||||||||||||||++++++| ++++++..++||+|+||||+++++.||+|++|++|+|+|+
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999887 7888888899999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCccccCCCCccchhhhcccCCCCCCCcccc
Q 002817 600 GSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATA 679 (876)
Q Consensus 600 Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 679 (876)
|+|+||+++ ++.|+++++.+...++..+....+...... .... .. .............+...........+|+++.
T Consensus 821 Gt~~eL~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 896 (1622)
T PLN03130 821 GTYEELSNN-GPLFQKLMENAGKMEEYVEENGEEEDDQTS-SKPV-AN-GNANNLKKDSSSKKKSKEGKSVLIKQEERET 896 (1622)
T ss_pred CCHHHHHhc-chhHHHHHHhcccccccccccccccccccc-cccc-cc-cccccccccccccccccccchhhhhHHHHhc
Confidence 999999987 788999887543211111100000000000 0000 00 0000000000000000000000111233344
Q ss_pred ccchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh-----hhhhhHHHHHHHHHHHHHHHH
Q 002817 680 KHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTT-----QREVKKITILFCCAAVITVIV 754 (876)
Q Consensus 680 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~i~ 754 (876)
+.+++. .|+.|+...+....+..+++..+......+..++|+.+|.. ......|.++|++++++..++
T Consensus 897 g~v~~~-------vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~ 969 (1622)
T PLN03130 897 GVVSWK-------VLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLV 969 (1622)
T ss_pred CccCHH-------HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHH
Confidence 444432 23445443111111111111122223334445566533321 112345778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 755 HAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVI 834 (876)
Q Consensus 755 ~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv 834 (876)
.+++.+.+.+.+.+++++||+++|++++++|++||| +||+|+|+|||++|++.+|..++..+..++..+..+++++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1047 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVL 1047 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 899999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhH
Q 002817 835 AFILNWRITLVVVAT 849 (876)
Q Consensus 835 ~~~~~~~l~lv~l~~ 849 (876)
+++.+|+.+++++++
T Consensus 1048 i~~~~~~~~~~~~pl 1062 (1622)
T PLN03130 1048 IGIVSTISLWAIMPL 1062 (1622)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888655544444
No 8
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-99 Score=976.16 Aligned_cols=683 Identities=19% Similarity=0.214 Sum_probs=519.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 002817 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQ-I 204 (876)
Q Consensus 126 ~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 204 (876)
.+.+.++...++..+|+|+++++...+++ .++|+++|++++|++++++.+ . .++.++..++.+++++++.|. +
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~----~l~~l~~~p~~ii~~~~~l~~~l 439 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-E----QLHGLWSAPFRIIVSMVLLYQQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677778999999999999887 489999999999999999975 2 444455555555544444443 4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 002817 205 SLVTLSIVPL---IALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (876)
Q Consensus 205 ~l~~l~~~pl---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 281 (876)
++.+++.+++ ++.+..++.++.++..++.++..++..+.++|.++||++||+|+||+.+.+++++.++++.+..++.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333322 2223456677888888888889999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
....++...+....+. .+.++++|++++.+|.+|+|.+|+++.++..+..|+..++..+..+.++++|++|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~~~--~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNSIPV--VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8777665443333222 23456788999989999999999998888888999999999999999999999999999987
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
+++.+... .......+.|+|+||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+
T Consensus 598 ~~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 598 EERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred cccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 65422111 111112347999999999986545679999999999999999999999999999999999999999876
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
. ++|++||||+|+||||++||||||+||+| .+++++.+|++.++++++++.||+||+|+|||+|.+|
T Consensus 675 ~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 675 V------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred E------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 3 35668999999999999999999999985 7899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEec
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 600 (876)
|||||||||||||+|+|||||||||||||||++++++| ++++++..++||+|+||||+++++.||+|++|++|+|+|+|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999988 67788878999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCccccCCCCccchhhhcccCCCCCCCccccc
Q 002817 601 SHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680 (876)
Q Consensus 601 t~~eL~~~~~g~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 680 (876)
+|+||+++ ++.|+++++.+...++..+..+..+...+. . . .. .......+.....+..........+|+++.+
T Consensus 822 t~~eL~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 894 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMENAGKMDATQEVNTNDENILKL--G-P-TV--TIDVSERNLGSTKQGKRGRSVLVKQEERETG 894 (1495)
T ss_pred CHHHHHhc-chhHHHHHHhcccccccccccccccccccc--c-c-cc--cccccccccccccccccchhhhhhHHHHhcC
Confidence 99999987 889999987654211111100000000000 0 0 00 0000000000000000000001122333444
Q ss_pred cchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh-----hhhhHHHHHHHHHHHHHHHHH
Q 002817 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQ-----REVKKITILFCCAAVITVIVH 755 (876)
Q Consensus 681 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~i~~ 755 (876)
.+++. .|+.|+..++....+..+++..+......+..++|+.+|... .....|..+|++++++..++.
T Consensus 895 ~v~~~-------vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~ 967 (1495)
T PLN03232 895 IISWN-------VLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVT 967 (1495)
T ss_pred cccHH-------HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 44432 234454432111111111111222233445556676433321 124568889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 756 AIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIA 835 (876)
Q Consensus 756 ~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~ 835 (876)
+++.+.+.+.+.++++++|+++|++++++|++||| +||+|+|+|||++|++.+|..++..+..++..+..++++++++
T Consensus 968 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 968 FTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHh
Q 002817 836 FILNWRITLVVVA 848 (876)
Q Consensus 836 ~~~~~~l~lv~l~ 848 (876)
++.+|...+++++
T Consensus 1046 ~~~~~~~~~~~~~ 1058 (1495)
T PLN03232 1046 GTVSTISLWAIMP 1058 (1495)
T ss_pred HHHHHHHHHHHHH
Confidence 8777655444443
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.9e-97 Score=882.76 Aligned_cols=567 Identities=21% Similarity=0.261 Sum_probs=482.3
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (876)
Q Consensus 43 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (876)
+++++++.+++++ .+.+++++.++..++.+..|+++++++|.+.....+ ..........++++.++..++.+++.
T Consensus 10 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (588)
T PRK11174 10 TRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP----REALLPPFILLILLFVLRALLAWLRE 84 (588)
T ss_pred hHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766544 345566666777777777788999999976421101 11122233334445556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (876)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (876)
+...+.+.++..++|.++|+|++++|.++|++ .++|++++|+++|++.+++++...+..++..++.+++.++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (588)
T PRK11174 85 RVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINW 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999998 49999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (876)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 282 (876)
.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK11174 164 AAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVL 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888889999999999999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002817 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGES---------FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAY 353 (876)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ 353 (876)
...+...++..++..+..+++++++++.+. |.+|+|.+ +.++.+......|+..+...+..+++++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 322 (588)
T PRK11174 244 RMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAE 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555555555544445455555443 77777753 11112333445788899999999999999999
Q ss_pred HHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 354 PIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 354 ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
|+.++++.+++.+. ......+....+.|+|+||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+
T Consensus 323 ri~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 323 SLVTFLETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHHHHHcCCCcccC-CCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999987653211 1110111112357999999998863 35699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhh
Q 002817 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513 (876)
Q Consensus 434 ~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~ 513 (876)
| |++|+|.+||+|+++++.+++|++|+||||||+||+|||||||++|+|++++||+++||+.+++++||++||+||||.
T Consensus 400 ~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 400 L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
|||+|.+||||||||||||||+++||+||||||||||||+++|+.|+++|+++.++||+|+||||++++++||+|+||++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CeEEEecChhHHhcCCCchHHHHHHHHH
Q 002817 594 RKIVKTGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 594 G~Ive~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
|+|+|+|+|+||+++ +|.|+++++.|.
T Consensus 559 G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 559 GQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred CeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 999999999999998 899999998775
No 10
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1e-96 Score=939.21 Aligned_cols=571 Identities=29% Similarity=0.448 Sum_probs=489.9
Q ss_pred hHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (876)
Q Consensus 42 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (876)
.+.+++++..++.+ .++++++++++.+++.|+++++++++++.+... .........+++++++++++.+++.+++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF----ANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544433 356677788888999999999999999976421 1111223345666777778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (876)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~-~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (876)
.++..+.++++..++|.++|+++++++++||++ +.++|++++|+++|++.+++++...+..++..++.+++.+++++++
T Consensus 887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 2489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 002817 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLI-AR-----------------VRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (876)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (876)
+|.+++++++++|++ ...+.++.+... ++ .++..++.+..++|+++||++||+|+.|+.
T Consensus 967 ~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999988765444333 333333322211 11 123355677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002817 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342 (876)
Q Consensus 263 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 342 (876)
+.++|++..++..+...+.....++..++..++..+..++++|+|++++..|.+|+|++++++.++.....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888888999999999999999999999887766655555677788889
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCcccCCC---CCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCC
Q 002817 343 TAFIRAKAAAYPIFEMIERDTMSKASSKTGRK---LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419 (876)
Q Consensus 343 ~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~s 419 (876)
..+++++++++|++++++.+++.+.....+.. ++...+.|+|+||+|+||++++.++|+|+||+|+||+++||||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence 99999999999999999876543221111111 123457899999999999776678999999999999999999999
Q ss_pred CccHHHHHHHHHcCCCC------------------------------------------------------CccEEEECC
Q 002817 420 GSGKSTVISLIERFYEP------------------------------------------------------LSGEILLDG 445 (876)
Q Consensus 420 GsGKSTll~lL~~~~~p------------------------------------------------------~~G~I~idG 445 (876)
|||||||++||+|+|+| ++|+|++||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 99999999999999999 699999999
Q ss_pred eeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 446 NNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 446 ~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
+|+++++.++||++||||||||+||+|||||||+||+|+++++++++||+.|++||||.+||+||||.|||+|.+|||||
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeC----CeEE-E
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQG----RKIV-K 598 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~----G~Iv-e 598 (876)
||||||||||++||+||||||||||||+++|+.|+++|++.. ++||+|+||||++++++||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999884 69999999999999999999999999 9955 8
Q ss_pred ecChhHHhcCCCchHHHHHHHH
Q 002817 599 TGSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 599 ~Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
+|||+||+++.+|.|++|++.|
T Consensus 1444 ~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhcCCChHHHHHhhc
Confidence 9999999983389999999765
No 11
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.4e-96 Score=868.11 Aligned_cols=551 Identities=35% Similarity=0.528 Sum_probs=493.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 57 LMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136 (876)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (876)
.+.++.++..+..+.....+.+++.++|.+... ..........++++.++..++.++..+...+.+.+...++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-------LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666667788889876511 1222333444555555667777777788888889999999
Q ss_pred HHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIA 216 (876)
Q Consensus 137 R~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 216 (876)
|.++++++++.|+++|++. ++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++++..|++.
T Consensus 88 r~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 166 (567)
T COG1132 88 RRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA 166 (567)
T ss_pred HHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999994 899999999999999999998886666667888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 217 LAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296 (876)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 296 (876)
+...++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+.....+...+....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998788999999999999999999999999999999999999999999999998988888888888878888888
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCC
Q 002817 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376 (876)
Q Consensus 297 ~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 376 (876)
.+..+.++++|.+.+..+.+++|.+.+++.+......|+..+...+..+..+..+.+|++++++.++...+... ...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~ 323 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---PLK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC---CCC
Confidence 88888999999999999999999998888888888889999999999999999999999999998665332211 123
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH
Q 002817 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 377 ~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l 456 (876)
...++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|++||+||++++.++|
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34567999999999984 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
|++|+||||||+||++||+|||+||+|++++||+++||+.+++||||+++|+||||.|||+|.+||||||||||||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHH
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l 616 (876)
+||||||||||||+||+++|+.|+++++++.++||+|+||||++++++||+|+|||+|+|+|.|+|+||+++ +|.|++|
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999999999998 9999999
Q ss_pred HHHHH
Q 002817 617 VQLQE 621 (876)
Q Consensus 617 ~~~~~ 621 (876)
|+.|.
T Consensus 561 ~~~~~ 565 (567)
T COG1132 561 YQAQG 565 (567)
T ss_pred HHHhh
Confidence 98874
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.8e-94 Score=872.25 Aligned_cols=565 Identities=34% Similarity=0.505 Sum_probs=496.2
Q ss_pred chHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (876)
Q Consensus 41 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (876)
+.+++++++.++. +..+..++++.++..+.....|+++++++|.+.... + ..........++++.++..++.++
T Consensus 147 ~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l 220 (711)
T TIGR00958 147 DLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK-G----PPALASAIFFMCLLSIASSVSAGL 220 (711)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776543 334455555666666666677788999999875321 1 111222233344445566677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (876)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (876)
+.+++.+.+.++..++|.++|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 221 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 221 RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999998 499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 002817 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (876)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 280 (876)
+|.+++++++.+|+..++..++.++.++..++.++..++..+.+.|+++|+++||+|++|+.+.++|++..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 002817 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (876)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~ 360 (876)
.....+.......++..+..++++++|++++..|.+|+|.+++++.+......|+..+...+..+++++.+.+|+.++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77776666655556666667778889999999999999999998888888889999999999999999999999999998
Q ss_pred cccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 002817 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (876)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~ 440 (876)
.+++.+.. ....+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~--~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLT--GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCC--CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 76653221 1112223456899999999998766678999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 441 I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
|++||+|+++++.+++|++|+||||||++|++||||||+||.++++++++.+||+.+++++||+++|+||||.+||+|.+
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEec
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 600 (876)
||||||||||||||+++||+||||||||||||+++|+.+++ ....++||+|+||||++++++||+|+||++|+|+|+|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999988 3345799999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 002817 601 SHEELISNPNSAYAALV 617 (876)
Q Consensus 601 t~~eL~~~~~g~y~~l~ 617 (876)
+|+||+++ +|.|++|+
T Consensus 696 t~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 696 THKQLMED-QGCYKHLV 711 (711)
T ss_pred CHHHHHhC-CCchHhcC
Confidence 99999997 78998763
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.4e-93 Score=867.18 Aligned_cols=602 Identities=23% Similarity=0.284 Sum_probs=503.5
Q ss_pred CCCCCCCccCCCC--CcccCCCCCCCCcchhhhHHhhhhhcchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002817 2 STPAVGSFPVNDY--NNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFF 79 (876)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 79 (876)
.||+.|+..++.+ .+...+.-...++..+.++. ..+...+++++++.++++.. +...++++++..+.....|+++
T Consensus 101 ~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~p~~~ 177 (710)
T TIGR03796 101 NDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQKG--GRKPSLLRALWRRLRGSRGA-LLYLLLAGLLLVLPGLVIPAFS 177 (710)
T ss_pred ECCCCCCEEccHHHHHhhCCCeEEEEEECcccccc--CcCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788887665332 23333322222222221111 11123344555544433222 2222333333333333444678
Q ss_pred HHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChh
Q 002817 80 GKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTG 159 (876)
Q Consensus 80 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G 159 (876)
+.++|.+.... . ..........++++.++..++.+++.+.....+.++..++|.++|+++++.|+++|++ .++|
T Consensus 178 ~~iid~v~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~~~g 251 (710)
T TIGR03796 178 QIFVDEILVQG-R----QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-RHAG 251 (710)
T ss_pred HHHHHHHhhcC-C----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-Cccc
Confidence 88999765321 1 1122223334444556667788888888999999999999999999999999999998 4999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 160 EVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVK 239 (876)
Q Consensus 160 ~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (876)
++++|+++| +.+++++...+...+..+..+++.++++++++|.++++.++.+|+.+++..++.++.++..++.++..++
T Consensus 252 ~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (710)
T TIGR03796 252 DIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGK 330 (710)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 7899999999999999999999999999999999999999999999998889999988888889999999
Q ss_pred HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Q 002817 240 AGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGG 319 (876)
Q Consensus 240 ~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g 319 (876)
..+.+.|.++|+++||++++|+.+.++|.+...+..+...+.....++...+..++..+..++++++|++++.+|.+|+|
T Consensus 331 ~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G 410 (710)
T TIGR03796 331 LTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIG 410 (710)
T ss_pred HHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999998888888888777777777777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcc---c-CCCC-CCCcccEEEEeEEEECCCC
Q 002817 320 ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK---T-GRKL-DKLSGHIEFKDVSFCYPSR 394 (876)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~---~-~~~~-~~~~~~I~~~~vsf~y~~~ 394 (876)
.++++..+......|+..+...+..+++++++.+|+.++++.+++.+.... . .... +...+.|+|+||+|+|++.
T Consensus 411 ~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~ 490 (710)
T TIGR03796 411 MLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL 490 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC
Confidence 999988888888889999999999999999999999999987654322110 0 0111 2335689999999999853
Q ss_pred CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccH
Q 002817 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI 474 (876)
Q Consensus 395 ~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TI 474 (876)
++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|+|||
T Consensus 491 -~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi 569 (710)
T TIGR03796 491 -EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569 (710)
T ss_pred -CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 002817 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (876)
Q Consensus 475 reNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~ 554 (876)
||||++|+|+++++++++||+.++++++|.++|+||||.|||+|.+|||||||||+||||++++|+||||||||||||++
T Consensus 570 ~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~ 649 (710)
T TIGR03796 570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649 (710)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHH
Q 002817 555 SENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (876)
Q Consensus 555 te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~ 617 (876)
+|+.|.+.|++ .++|+|+||||+++++.||+|+||++|+|+|+|+|+||+++ +|.|++|+
T Consensus 650 te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 650 TEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred HHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 99999999987 58999999999999999999999999999999999999987 89999986
No 14
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.4e-91 Score=898.54 Aligned_cols=789 Identities=18% Similarity=0.228 Sum_probs=559.9
Q ss_pred cchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002817 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (876)
Q Consensus 40 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (876)
++++.+.+..+.++.+...++..++..+..+++| ++++.+++.+.... .+ ......++..++++.++..++..
T Consensus 304 ~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P---~ll~~li~~~~~~~-~~---~~~g~~~~~~~~~~~~~~~~~~~ 376 (1522)
T TIGR00957 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGP---QILSLLIRFVNDPM-AP---DWQGYFYTGLLFVCACLQTLILH 376 (1522)
T ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCC-cc---cchHHHHHHHHHHHHHHHHHHHH
Confidence 3456665555555544444444455555556666 56788888753211 11 00001111122222222333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (876)
Q Consensus 120 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (876)
...+.....+.++...++..+|+|+++++...+++ .++|+++|++++|++++.+.. ..++.+|..++.++++++
T Consensus 377 ~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~-----~~~~~~~~~~~~i~~~~~ 450 (1522)
T TIGR00957 377 QYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS-STVGEIVNLMSVDAQRFMDLA-----TYINMIWSAPLQVILALY 450 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 23333455677777888889999999999999888 489999999999999998855 356666666666555555
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 002817 200 RVWQI----SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTY 275 (876)
Q Consensus 200 ~~~~l----~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 275 (876)
+.|.. +++.++++++++.+...+.++.++..++.++..++..+.++|.++||++||+|+||+.+.+++++.++++.
T Consensus 451 ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~ 530 (1522)
T TIGR00957 451 FLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEEL 530 (1522)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55532 33444455566666777788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002817 276 KYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH--KHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAY 353 (876)
Q Consensus 276 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ 353 (876)
+..++......+........+.+ +.++.++.|.+. ++.++++.+|+++.++..+..|+..++..+..+.+++++.+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~ 608 (1522)
T TIGR00957 531 KVLKKSAYLHAVGTFTWVCTPFL--VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLK 608 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777766544333222222 223345566655 35789999999888888888999999999999999999999
Q ss_pred HHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 354 PIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 354 ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
|+.++++.++............+...+.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 609 Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~ 687 (1522)
T TIGR00957 609 RLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 687 (1522)
T ss_pred HHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999986543211100000001112379999999999743 35699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhh
Q 002817 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513 (876)
Q Consensus 434 ~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~ 513 (876)
++|++|+|.+|| +||||||+||+|++||||||.||.+ .++++..++++.+++.+++..+|+|++|.
T Consensus 688 ~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ 753 (1522)
T TIGR00957 688 MDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTE 753 (1522)
T ss_pred CccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCce
Confidence 999999999999 4999999999999999999999975 45566677777777888899999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhcCCCeEEEEcCCchhhhhcCEEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD---RVMVGRTTVVVAHRLSTIRNADVIAV 590 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~---~~~~~~T~I~ItHrls~i~~aD~Iiv 590 (876)
+||+|.+|||||||||+||||+|++||||||||||||||+++++++.+.+. +..+++|+|+|||+++.++.||+|++
T Consensus 754 ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~ 833 (1522)
T TIGR00957 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833 (1522)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEE
Confidence 999999999999999999999999999999999999999999999987774 35678999999999999999999999
Q ss_pred EeCCeEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCC--C---CCCCCc-------cccccccccC----Ccccc
Q 002817 591 VQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC--P---NMGRPL-------SIKFSRELSG----TRTSF 654 (876)
Q Consensus 591 l~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~~~~~--~---~~~~~~-------~~~~~~~~~~----~~~~~ 654 (876)
|++|+|+++|+|+|++++ ++.|.+++..+...+.....+.. . ...... .......... .....
T Consensus 834 l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1522)
T TIGR00957 834 MSGGKISEMGSYQELLQR-DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSS 912 (1522)
T ss_pred ecCCeEEeeCCHHHHHhc-chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence 999999999999999987 78899888654322111000000 0 000000 0000000000 00000
Q ss_pred CCCC---cc-chhhhcc--cC----CCCCCCccccccchHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 002817 655 GASF---RS-EKESVLS--HG----AADATEPATAKHVSAIKLYSMVRPDWTYGVCGTIC-AIIAGAQMPLFALGVSQAL 723 (876)
Q Consensus 655 ~~~~---~~-~~~~~~~--~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~p~~~~~~~~~~ 723 (876)
.... .. .....+. .+ ....+|+++.+.+. ...|+.|+..++.. .++..+. .++..+....
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~-------~~~y~~Y~~~~g~~~~~~~~~~--~~~~~~~~~~ 983 (1522)
T TIGR00957 913 DSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVE-------LSVYWDYMKAIGLFITFLSIFL--FVCNHVSALA 983 (1522)
T ss_pred ccccccccccccccccccccccchhhhHHHHHHhcCccc-------HHHHHHHHHHcCHHHHHHHHHH--HHHHHHHHHH
Confidence 0000 00 0000000 00 00011122233333 23455666543222 2121111 2222334444
Q ss_pred HHhcCCchhh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCH
Q 002817 724 VAYYMDWDTT-------QREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796 (876)
Q Consensus 724 ~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~ 796 (876)
.++|..+|.. ......|..+|++++++..++.+++.+++.+++.++++++|+++|++++++|++||| .+|+
T Consensus 984 ~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~ 1061 (1522)
T TIGR00957 984 SNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPS 1061 (1522)
T ss_pred HHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCCh
Confidence 5555533321 111335667899999999999999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHH
Q 002817 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIKT-LLSRLWRQLE 870 (876)
Q Consensus 797 GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~-~~~~~~~~~~ 870 (876)
|+|+|||++|++.+|..++..+..++..++.++++++++++.+|++++++++++++++....+. ...+..+++|
T Consensus 1062 G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 1136 (1522)
T TIGR00957 1062 GNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLE 1136 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777777766665554433 3344444444
No 15
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.7e-93 Score=865.93 Aligned_cols=565 Identities=25% Similarity=0.332 Sum_probs=491.9
Q ss_pred chHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (876)
Q Consensus 41 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (876)
..+.+++.+.++.++. +...++++++..++....|++++.++|.+.... ....+......++++.++..++.++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-----MMGTLGIISIGLIIAYIIQQILSYI 215 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666665544333 233334444444445555677889999865321 1122222333344445566678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (876)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (876)
+.++..+.+.++..++|.+++++++++|+++|++ .++|++++|++ |++.+++++...+...+..+..+++.+++++++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (708)
T TIGR01193 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQ 293 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999998 49999999997 999999999888888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 002817 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (876)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 280 (876)
+|.++++.++.+|+++++..++.++.++..++.++..++..+.+.|+++|+++||+||+|+.+.+++++...+..+...+
T Consensus 294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 373 (708)
T TIGR01193 294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 002817 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (876)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~ 360 (876)
.....+....+..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 453 (708)
T TIGR01193 374 YQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL 453 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88777776666666666777888999999999999999999998888888888999999999999999999999999998
Q ss_pred cccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 002817 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (876)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~ 440 (876)
.+++.+... .....+...+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 454 ~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 454 VDSEFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred CCCcccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 765432211 10112234568999999999973 357999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcC-CCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCC
Q 002817 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (876)
Q Consensus 441 I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g-~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~ 519 (876)
|++||+|+++++.+++|++||||||||+||+|||||||++| +|+++++++++||+.+++++||+++|+||||.|||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999999999999 47899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. +++|+|+||||+++++.||+|+||++|+++|.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999875 78999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHH
Q 002817 600 GSHEELISNPNSAYAALVQ 618 (876)
Q Consensus 600 Gt~~eL~~~~~g~y~~l~~ 618 (876)
|+|+||+++ +|.|+++++
T Consensus 690 G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCHHHHHhc-CCcHHHHhh
Confidence 999999997 899999874
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.1e-92 Score=856.49 Aligned_cols=545 Identities=26% Similarity=0.307 Sum_probs=483.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 61 GSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAY 140 (876)
Q Consensus 61 ~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 140 (876)
.++++++..+.....|++++.++|.+.... ........+..++++.++..++.+++.+.....+.++..++|..+
T Consensus 141 ~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (686)
T TIGR03797 141 ILAMGLLGTLLGMLVPIATGILIGTAIPDA-----DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAV 215 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445567888999875321 112222334444555566678888888888999999999999999
Q ss_pred HHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220 (876)
Q Consensus 141 ~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~ 220 (876)
|+++++.|+++|++ .++|++++|++ |++.+++.+...+...+..+..+++.++++++++|.+++++++++|+.+++..
T Consensus 216 ~~~ll~~~~~~~~~-~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~ 293 (686)
T TIGR03797 216 WDRLLRLPVSFFRQ-YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTL 293 (686)
T ss_pred HHHHHcCCHHHHCC-CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 49999999997 79999999998888888888888888999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSW 300 (876)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 300 (876)
++.+..++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+.....+....+..++..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 373 (686)
T TIGR03797 294 VLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTS 373 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999988888887777777777778
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcc
Q 002817 301 SLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380 (876)
Q Consensus 301 ~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (876)
++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++++.+|+.++++.+++.+.. ...+....+
T Consensus 374 ~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~~~~~~ 450 (686)
T TIGR03797 374 AALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTDPGKLSG 450 (686)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCCCCCCCc
Confidence 88899999999999999999999888888888899999999999999999999999999876543211 111222346
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|
T Consensus 451 ~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 451 AIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred eEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 89999999999743 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 461 ~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
|||||||+||+|||||||++|+| ++++++++||+.++++++|+++|+||||+|||+|.+|||||||||+||||+++|||
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHH
Q 002817 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
|||||||||+||+++|+.+.+.|++. ++|+|+||||+++++.||+|+||++|+|+|+|+|+||+++ +|.|+++++.|
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 99999999999999999999999886 6899999999999999999999999999999999999997 89999998754
No 17
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.8e-92 Score=856.36 Aligned_cols=556 Identities=25% Similarity=0.336 Sum_probs=484.5
Q ss_pred hHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (876)
Q Consensus 42 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (876)
.+.+++.+.++++. .+...++++++..++....|++++.++|.+.... + ........+.++++.++..++.+++
T Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (694)
T TIGR03375 134 PKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-A----FETLWVLAIGVALAIVFDFVLKTLR 207 (694)
T ss_pred cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-c----HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554443322 2223333444444444555567888999765321 1 1122223333444455567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (876)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (876)
.++..+.+.++..++|..+|+|++++|+++ ++ .++|++++|+ +|++.+++++...+...+..+..+++.++++++++
T Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (694)
T TIGR03375 208 SYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIG 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998 56 4899999999 79999999999888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 002817 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (876)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 281 (876)
|.++++.++.+|+++++..++.++.++..++.++..++..+.+.|+++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 285 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR03375 285 GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKS 364 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
....+....+..++..++.++++++|++++.+|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~ 444 (694)
T TIGR03375 365 RFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQL 444 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888887777777777788889999999999999999999988888888889999999999999999999999999987
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
+++.+.. ......+...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 445 ~~e~~~~-~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I 522 (694)
T TIGR03375 445 PVERPEG-TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522 (694)
T ss_pred CCCCCCC-CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 6543221 1111112334689999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
.+||+|+++++.+++|++|+||||||++|+|||+|||++|+|+++++++++||+.++++++|++||+||||.|||+|.+|
T Consensus 523 ~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred EECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
||||||||+||||++++|+||||||||||||+++|+.|+++|++..+++|+|+||||+++++.||+|+||++|+|+|+|+
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred hhHHhcC
Q 002817 602 HEELISN 608 (876)
Q Consensus 602 ~~eL~~~ 608 (876)
|+||+++
T Consensus 683 ~~eLl~~ 689 (694)
T TIGR03375 683 KDQVLEA 689 (694)
T ss_pred HHHHHHH
Confidence 9999875
No 18
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-95 Score=774.61 Aligned_cols=546 Identities=28% Similarity=0.378 Sum_probs=455.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 67 VHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSV------AILFSSWIEVSCWMYTGERQAAKMRMAY 140 (876)
Q Consensus 67 ~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 140 (876)
+..+.....|.+..+++|.+.. +...... ....++.+.+ +..+++-+++++|..+.+...+++-..+
T Consensus 226 i~rli~~~~pi~~k~iv~~lta----p~~~~~~---~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 226 IGRLINVSLPILSKWIVDELTA----PDTFQYS---LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHhhhhHHhHHHHHHhhcC----cchhhHH---HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHH
Confidence 3334444455677888887652 1111111 1122222222 2356677788888889999999999999
Q ss_pred HHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002817 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII-GFARVWQISLVTLSIVPLIALAG 219 (876)
Q Consensus 141 ~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~l~~~pl~~~~~ 219 (876)
|+|+..++++|+-++ .+||++.-+...++.+. ++...+.++...+.-..++++. .+.++|+.++++++++.+.+.+.
T Consensus 299 frHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~T 376 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVT 376 (790)
T ss_pred HHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhee
Confidence 999999999999884 89999998887776665 4443333444334434444433 23478999999998888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLS 299 (876)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 299 (876)
......-.+..+++.....+......+++-|.+|||-|++|+++.++|.+...++.+...|....-.+.......+..+.
T Consensus 377 i~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 377 IKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred eeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 55555555555666666666667888999999999999999999999999999998888887665555554445555555
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCc
Q 002817 300 WSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLS 379 (876)
Q Consensus 300 ~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 379 (876)
.+..-.+..|.+..+.+|+|+.+.+..+.+.+.+|+..++..+..+++..+-.++++++++++++..+. ++..+....+
T Consensus 457 ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~-P~a~pl~~~~ 535 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL-PGAPPLKVTQ 535 (790)
T ss_pred HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC-CCCCCccccC
Confidence 555555666777789999999887778888999999999999999999999999999999988876543 2333444557
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
|.|+|+||+|+|+ |.+|+|+||||+++||+++|+|||||+||||++++|.||||.++|+|.+||+||+++..++||++
T Consensus 536 G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 536 GKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 8999999999997 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
||+||||..|||+||..||.||+|.+++|||.+|++.|++||-|..+|+||+|.|||||-.||||+|||+||||+++++|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHH
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~ 619 (876)
.|++|||||||||+++|+.||.++.++..+||+|+|||||||+-+||.|+|++||+|+|.|+|+||+++++|.|++||+.
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999988
Q ss_pred HHHhh
Q 002817 620 QEAAS 624 (876)
Q Consensus 620 ~~~~~ 624 (876)
|+..+
T Consensus 774 qqa~g 778 (790)
T KOG0056|consen 774 QQAMG 778 (790)
T ss_pred HHhcC
Confidence 76543
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.5e-91 Score=826.33 Aligned_cols=565 Identities=22% Similarity=0.272 Sum_probs=481.0
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124 (876)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (876)
+++++.+++++ .+.++++++++..+.....+.++++++|............... ......+++++++..++.++..++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 6 PFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNY-MLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred HHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444333 3334555555555555556678899999653211000000011 111223334455677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204 (876)
Q Consensus 125 ~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (876)
....+.++..++|.++|+|++++|.++|++ .++|++++|+++|++.+++++...++.++..++.+++.++++++++|.+
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999998 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 205 SLVTLSIVPLIALA-GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGL 283 (876)
Q Consensus 205 ~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~ 283 (876)
++++++++|++.++ ..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888876654 45667777888888899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 002817 284 AKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVI-AGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (876)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~ 362 (876)
..+...++..++..+..++++++|++++ .|.+++|.+++++.+... ...|+..+...+..++++.++.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888887777777777778889999884 788999998776555433 34467777778889999999999999999876
Q ss_pred cccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 002817 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (876)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~ 442 (876)
++.+.... .......+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 322 ~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 322 PEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 54322111 1112234679999999999753 24699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 443 idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
+||+|+++++.+++|++|+||||||+||++||+|||++|+|+++++++.+|++.+++++|+++ |+||||.|||+|.+||
T Consensus 399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred ECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecCh
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 602 (876)
|||||||+||||+++||+|||||||||+||+++|+.|+++|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 002817 603 EELISNPNSAYAALVQ 618 (876)
Q Consensus 603 ~eL~~~~~g~y~~l~~ 618 (876)
+||+++ +|.|+++++
T Consensus 558 ~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 558 QELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHHhc-CcHHHHHHh
Confidence 999998 899999986
No 20
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-90 Score=766.53 Aligned_cols=551 Identities=25% Similarity=0.337 Sum_probs=489.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 62 SIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYL 141 (876)
Q Consensus 62 ~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~ 141 (876)
.+++.+.+++...+.+++...++.+.... ...........++++.++..++.+.+.......+.++...+|..++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~-----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ-----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566667777654321 1233344555666677788888999988889999999999999999
Q ss_pred HHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 142 RSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGM 221 (876)
Q Consensus 142 ~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~ 221 (876)
+++.+.+..+-++ .++|+..+.++..++.++.+++..+|+.+...+..+..++.+++++|.-++++++++|++.+.+.+
T Consensus 81 ~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 81 DKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888 499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 222 YAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301 (876)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 301 (876)
+++..++..+++.+.+...++..-+.++|+.|+|.|+..+...+++.+..++.++..++.-++.-+....+.++.+++.+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887777777778888888888
Q ss_pred HHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcc
Q 002817 302 LLVWYVSVVVHK-HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380 (876)
Q Consensus 302 ~~~~~g~~~~~~-~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 380 (876)
++..|.+....+ |.+|....+.++...--.+.|+..++..++.-+.+.++.++++.+++.++...+.............
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 877777776677 7888877766666555567899999999999999999999999999887653221110011111223
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
+|+++|++|.||+.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 566669999998643 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 461 ~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
++|||+|+||+|||||||++|+|+++++++.+|++.+++.||+.. |+|+||+|||+|.+|||||+||+++|||++++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHH
Q 002817 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
+||||||||+||.+||+.|++.|.++.++||+|+||||++.+++||+|+|||+|+++|+|+|+||.++ +|.|++|+..|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999887
Q ss_pred HH
Q 002817 621 EA 622 (876)
Q Consensus 621 ~~ 622 (876)
..
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
No 21
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-89 Score=819.46 Aligned_cols=564 Identities=30% Similarity=0.467 Sum_probs=488.1
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124 (876)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (876)
+++++.++.++. +....++.++..+.....+.+++.++|...... .........+.++++.++..++.++..++
T Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (582)
T PRK11176 15 RLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKA-----DRSVLKWMPLVVIGLMILRGITSFISSYC 88 (582)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333332 223334444444444555567788888654211 01111122223334555666777787788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204 (876)
Q Consensus 125 ~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (876)
..+.+.++..++|..+++++++.|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 89 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 89 ISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 205 SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLA 284 (876)
Q Consensus 205 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~ 284 (876)
++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+....
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888889999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccc
Q 002817 285 KGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTM 364 (876)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~ 364 (876)
.+....+..++..+..++++++|++.+..|.+|+|.+++++.++.....|+..+...+..+++++.+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 77777777777777777888999999999999999988877777777889999999999999999999999999986544
Q ss_pred cccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 002817 365 SKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (876)
Q Consensus 365 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~id 444 (876)
.+. .....++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 328 ~~~---~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 328 KDE---GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CCC---CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 221 111122234579999999999753 3579999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCC-CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 445 G~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~-~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
|+|+++++.+++|++|+||||||++|++||||||++|+++ .+++++++||+.+++++|+++||+|+||.+||+|.+|||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 9999999999999999999999999999999999999864 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChh
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHE 603 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~ 603 (876)
||||||+||||++++|+||||||||||||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|+|+|+
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 002817 604 ELISNPNSAYAALVQLQ 620 (876)
Q Consensus 604 eL~~~~~g~y~~l~~~~ 620 (876)
||+++ ++.|++++..|
T Consensus 564 ~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 564 ELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred HHHhC-CChHHHHHHHH
Confidence 99998 89999999765
No 22
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.1e-90 Score=834.20 Aligned_cols=567 Identities=25% Similarity=0.355 Sum_probs=494.3
Q ss_pred hHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (876)
Q Consensus 42 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (876)
.+.+++++.++++. .+...++++++..++....|++++.++|.+.... + ........+.++++.++..++.+++
T Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~----~~~l~~l~~~~~~~~~~~~~~~~l~ 199 (694)
T TIGR01846 126 GFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-G----LSTLSVLALAMLAVAIFEPALGGLR 199 (694)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555443322 2223333334444444455577888999765321 1 1222333444455556677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (876)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (876)
.++....+.++..++|.++|++++++|+++|++ .++|++++|+ +|++.+++++...+...+..+...++.++++++++
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 277 (694)
T TIGR01846 200 TYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYS 277 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 4999999999 69999999998888888877777777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 002817 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (876)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 281 (876)
|.+++++++++|+++++..++.++.++..++..+..++.++.+.|+++|+++||+||.|+.+.++|++..++..+...+.
T Consensus 278 ~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 357 (694)
T TIGR01846 278 PTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRV 357 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
....+....+..++..+..++++++|++++..|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.
T Consensus 358 ~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 437 (694)
T TIGR01846 358 TNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888877777777777888889999999999999999999888887788889999999999999999999999999987
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
+++.+.. .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 438 ~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 438 PTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 6543221 111122335689999999999743 3469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
++||+|+++++.+++|++|+||||+|++|++||+|||++++|+++++++++||+.+++++++++||+|+||.+||+|.+|
T Consensus 515 ~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred EECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
||||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+++|+
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHH
Q 002817 602 HEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 602 ~~eL~~~~~g~y~~l~~~~ 620 (876)
|+||+++ +|.|+++++.|
T Consensus 675 ~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 675 HEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHHc-CChHHHHHHhh
Confidence 9999998 89999999765
No 23
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.6e-88 Score=864.27 Aligned_cols=772 Identities=17% Similarity=0.227 Sum_probs=540.2
Q ss_pred cchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002817 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (876)
Q Consensus 40 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (876)
.+++.+.+..++++..+..++..++..+..+++| ++++++++.+.... .. .......+++.++++.++..++..
T Consensus 67 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P---~ll~~li~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~l~~~ 140 (1490)
T TIGR01271 67 NPKLLNALRRCFFWRFVFYGILLYFGEATKAVQP---LLLGRIIASYDPFN-AP--EREIAYYLALGLCLLFIVRTLLLH 140 (1490)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCC-CC--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456665555555544444444455555666666 46788888753211 00 000111112222222222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHH
Q 002817 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLG----GFI 195 (876)
Q Consensus 120 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~----~~~ 195 (876)
...+.....+.++-..++..+|+|+++++...+++ .++|+++|++++|++++.+++. .++.+|..++ +++
T Consensus 141 ~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~-----~~~~~~~~pi~i~~~~~ 214 (1490)
T TIGR01271 141 PAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLA-----LAHFVWIAPLQVILLMG 214 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 33333334444444555555699999999998887 4899999999999999999763 3344444444 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 002817 196 IGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTY 275 (876)
Q Consensus 196 ~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 275 (876)
+++......+++.++++++++++..++.++..+..++.++..++..+.++|.++|||+||+|+||+.+.+++++.++++.
T Consensus 215 lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El 294 (1490)
T TIGR01271 215 LIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDEL 294 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333444566777777888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Q 002817 276 KYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLG-QAAPDITAFIRAKAAAYP 354 (876)
Q Consensus 276 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~a~~r 354 (876)
+..++...+.++...+..+.+.+ +.++.++.|.+.++ ++++.+|+++.++..+..|+. .++..+..+.++.++++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~R 371 (1490)
T TIGR01271 295 KLTRKIAYLRYFYSSAFFFSGFF--VVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITK 371 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887776555444443332 34556677766644 689999999888888888874 688889999999999999
Q ss_pred HHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCC-------------------------------CCccccce
Q 002817 355 IFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRP-------------------------------DVAIFDKF 403 (876)
Q Consensus 355 i~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-------------------------------~~~vL~~i 403 (876)
|.+++..++..+. . . ......|+++|++|+|+... ..++|+|+
T Consensus 372 I~~fL~~~e~~~~-~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i 445 (1490)
T TIGR01271 372 IQDFLCKEEYKTL-E---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNI 445 (1490)
T ss_pred HHHHhcCcccccc-c---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeee
Confidence 9999986543211 0 0 01123699999999996310 13589999
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCC
Q 002817 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD 483 (876)
Q Consensus 404 sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~ 483 (876)
||+|++||+++|+||+|||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||+||.+
T Consensus 446 ~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~ 512 (1490)
T TIGR01271 446 SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS 512 (1490)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc
Confidence 999999999999999999999999999999999999999999 4999999999999999999999974
Q ss_pred CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-H
Q 002817 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-A 562 (876)
Q Consensus 484 ~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~-~ 562 (876)
.+.++..++++.+++.+++..+|+|++|+|||+|.+|||||||||+||||+|++|+||||||||||||+++++++.+ +
T Consensus 513 -~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~ 591 (1490)
T TIGR01271 513 -YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591 (1490)
T ss_pred -cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 34444555555556778899999999999999999999999999999999999999999999999999999999965 7
Q ss_pred HHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHHhh----hc------------
Q 002817 563 LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAAS----QQ------------ 626 (876)
Q Consensus 563 l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~~~----~~------------ 626 (876)
++++.+++|+|+|||+++.++.||+|++|++|+|++.|+|+|+.+. ++.|.+.+....... +.
T Consensus 592 l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1490)
T TIGR01271 592 LCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRV 670 (1490)
T ss_pred HHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccc
Confidence 8888889999999999999999999999999999999999999986 667777664111000 00
Q ss_pred -CC--------CCCCCCC-CCCccc--c---------c--------------------ccc--ccCCc--------c---
Q 002817 627 -SN--------SSQCPNM-GRPLSI--K---------F--------------------SRE--LSGTR--------T--- 652 (876)
Q Consensus 627 -~~--------~~~~~~~-~~~~~~--~---------~--------------------~~~--~~~~~--------~--- 652 (876)
.. .+..... ..+... . . ..+ ..... .
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1490)
T TIGR01271 671 SIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQ 750 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccc
Confidence 00 0000000 000000 0 0 000 00000 0
Q ss_pred ---ccC-CC---------------------C--ccc--h-h---h--------------hc-c------cCC------C-
Q 002817 653 ---SFG-AS---------------------F--RSE--K-E---S--------------VL-S------HGA------A- 671 (876)
Q Consensus 653 ---~~~-~~---------------------~--~~~--~-~---~--------------~~-~------~~~------~- 671 (876)
... .. . ..+ . . . .. . ..+ .
T Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1490)
T TIGR01271 751 GEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEE 830 (1490)
T ss_pred cccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 00 0 000 0 0 0 00 0 000 0
Q ss_pred ----------CCCCccccccchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cchhhh------
Q 002817 672 ----------DATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQ------ 734 (876)
Q Consensus 672 ----------~~~e~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~------ 734 (876)
..+|++..+.++ ++.|+.|+..++....+..++..+++..++..+.++|+ .|+...
T Consensus 831 ~~~~~~~~~~~~~e~~~~g~v~-------~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~ 903 (1490)
T TIGR01271 831 INEEDLKECFADERENVFETTT-------WNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQ 903 (1490)
T ss_pred chhhhhhhhhhHHHHhhcCccc-------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhccccccccccc
Confidence 000111122222 23456676543221111111222334456666777777 333210
Q ss_pred --h---------------hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCH
Q 002817 735 --R---------------EVKKI-TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796 (876)
Q Consensus 735 --~---------------~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~ 796 (876)
. ....| .++|++++++..++.+++.+.+.+.+.++++++|+++|++++++|++||| ++|+
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~ 981 (1490)
T TIGR01271 904 QHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKA 981 (1490)
T ss_pred ccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCh
Confidence 0 01112 44555566556778888999999999999999999999999999999999 7999
Q ss_pred HHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002817 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG 856 (876)
Q Consensus 797 GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~ 856 (876)
|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|++++++++++.+++..
T Consensus 982 G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~ 1041 (1490)
T TIGR01271 982 GRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIML 1041 (1490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998776655554444433
No 24
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-90 Score=753.87 Aligned_cols=547 Identities=27% Similarity=0.349 Sum_probs=458.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 66 CVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSML 145 (876)
Q Consensus 66 ~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~ 145 (876)
..+....-..|.+++.++|........+ ...+........+.+..++..++..++...+.++.+++.++.-.++|++.+
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~ 118 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLM 118 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555677888888763111111 112223334455666677788889999999999999999999999999999
Q ss_pred cCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 146 NQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA-RVWQISLVTLSIVPLIALAGGMYAY 224 (876)
Q Consensus 146 ~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~~pl~~~~~~~~~~ 224 (876)
.+++++|.+ ..+|++.+.+..-...+..++.-.+..++..++-+........+ +....+++.+..+..++........
T Consensus 119 ~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 119 SLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred hhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 999999998 49999999999999999998887777776666555444433333 4555666666665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 225 VTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLV 304 (876)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 304 (876)
.-.+..++..++.+.++..+.|++.|-.+||+||.|+++.++|.....+..+...+.....++.......+.....+.+.
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im 277 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIM 277 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777788888888999999999999999999999999999999999998888877766665555555445555666
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEE
Q 002817 305 WYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEF 384 (876)
Q Consensus 305 ~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~ 384 (876)
+.|..-+.++.+|.|++........++..|+..+...+..+.++..-...++...+....+.+ ...+....++.|+|
T Consensus 278 ~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 278 VLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGGSIEF 354 (591)
T ss_pred HHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCCcEEE
Confidence 667776788899999998887788888999999999988888888877777666544333221 11223334568999
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEe
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~ 464 (876)
+||+|+|+ |++++|+++||+|++||+|||||+|||||||++++|+||++ ++|+|+|||+||++++++++|+.|||||
T Consensus 355 ~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 99999997 35579999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 002817 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544 (876)
Q Consensus 465 Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllL 544 (876)
||..|||+||.+||.||+|.+++|||.++|+.++.||-|.+||+||+|.|||||..||||||||||||||++|||||+++
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHH
Q 002817 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 545 DE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
|||||+||++||+.+.+.+.+...+||+|+|+||++++++||+|+++|||+|.|.|||+||+++ .+.|+++|..|.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~-s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP-SELYADLWTTQT 587 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh-hhHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999995 899999997653
No 25
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-88 Score=809.89 Aligned_cols=566 Identities=26% Similarity=0.353 Sum_probs=473.6
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (876)
Q Consensus 43 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (876)
+++++.+..++++ .+.+..++.++..++.+..|.+++.++|.+.... +. . ........+.++++.++..++.++..
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NL-P-LGLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333 2334455555556666667778899999764321 10 0 01111112223334445566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (876)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (876)
+.....+.++..++|.++|+++++.|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999998 49999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (876)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 282 (876)
.++++.++++|+.+++..+..+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777777788888888888999999999999999999999999999998888777776666
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 283 LAKGLG-LGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
...+.. ..+..++..+...++++++++ +..|.+++|.++++..+......|+..+...+..+.++..+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655443 222223222222223333333 568899999999888888788889999999999999999999999999986
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
+++... . ...+...++|+|+||+|+||+ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 325 ~~~~~~--~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 325 PRQQYG--N--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CCccCC--C--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 543211 1 111223467999999999974 3469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
.+||.|+++++.+++|++|+||||||+||++||||||++|+ +++++++++||+.++++++|++||+||||.+||+|.+|
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
||||||||+||||+++||||+|||||||+||+++|+.|.+.|+++.+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHHH
Q 002817 602 HEELISNPNSAYAALVQLQEA 622 (876)
Q Consensus 602 ~~eL~~~~~g~y~~l~~~~~~ 622 (876)
|+||+++ ++.|+++++.|..
T Consensus 558 ~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 558 HQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999998 8999999987743
No 26
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-87 Score=801.23 Aligned_cols=553 Identities=31% Similarity=0.466 Sum_probs=496.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 57 LMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136 (876)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (876)
.++++++++++.+++.+..+.+++.++|...... ...........++++.++..++.++..+.....+.++..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 89 (571)
T TIGR02203 15 GLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-----DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDI 89 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777788888888654321 11122233334555566677888888888999999999999
Q ss_pred HHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIA 216 (876)
Q Consensus 137 R~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 216 (876)
|..+++++++.|.+++++ .++|++++|+++|++.+++++...+..++..+..+++.++++++++|.+++++++++|+.+
T Consensus 90 r~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~ 168 (571)
T TIGR02203 90 RVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS 168 (571)
T ss_pred HHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999998 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 217 LAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296 (876)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 296 (876)
++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+.....+....+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (571)
T TIGR02203 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCC
Q 002817 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376 (876)
Q Consensus 297 ~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 376 (876)
.+..++++++|++++..|.+|+|.++++..++.....|+..+...+..+++++++.+|+.++++.+++.+.. .....
T Consensus 249 ~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~ 325 (571)
T TIGR02203 249 SLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAIE 325 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC
Confidence 777788899999999999999999999988888888999999999999999999999999999876543211 11112
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH
Q 002817 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 377 ~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l 456 (876)
+..+.|+++||+|+|+++ +.++|+|+||+|++||+++|||+||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 326 ~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 326 RARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 234579999999999754 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEeccCCCccccHHHHHHcCCC-CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 457 RQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~TIreNI~~g~~-~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
|++|+||||+|++|+|||||||++|++ +.++++++++|+.+++++++.+||+|+||+|||+|.+|||||||||+||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
+++|||+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++ ++.|++
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~ 563 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQ 563 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999987 789999
Q ss_pred HHHHH
Q 002817 616 LVQLQ 620 (876)
Q Consensus 616 l~~~~ 620 (876)
++..+
T Consensus 564 ~~~~~ 568 (571)
T TIGR02203 564 LHNMQ 568 (571)
T ss_pred HHHHh
Confidence 88754
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.1e-88 Score=795.25 Aligned_cols=524 Identities=23% Similarity=0.276 Sum_probs=443.6
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 46 LFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCW 125 (876)
Q Consensus 46 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (876)
++++.+++++ .+.+..+++++..+.....|+++++++|...... ... ........++++.++..++.++..++.
T Consensus 4 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02868 4 ILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMP----PVL-YLSVAAVAVRAFGIGRAVFRYLERLVG 77 (529)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 2334444445555555556678899999754211 000 000011112233455667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQIS 205 (876)
Q Consensus 126 ~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (876)
...+.++..++|.++|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++
T Consensus 78 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 156 (529)
T TIGR02868 78 HDAALRSLGRLRVRVYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA 156 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 88999999999999999999999999998 49999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 206 LVTLSIVPLIALAGGMYAYV-TIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLA 284 (876)
Q Consensus 206 l~~l~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~ 284 (876)
+++++.+|++.++...+.++ .++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+....
T Consensus 157 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02868 157 LVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARA 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877666555444 45556677778889999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccc
Q 002817 285 KGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTM 364 (876)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~ 364 (876)
.+...++..++..+..++++++|++++..|.+|+|.+.+++.+......|+..+...+..+++++++.+|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (529)
T TIGR02868 237 TGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGP 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88877777777777778888999999999999999998887777777888888888999999999999999999987654
Q ss_pred cccCccc-CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 002817 365 SKASSKT-GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (876)
Q Consensus 365 ~~~~~~~-~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i 443 (876)
.+..... .....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 317 RPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred cCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3221111 11111234579999999999753 35999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 444 DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 444 dG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
||+|++++ .+++|++|+||||||+||++||||||++|+|++++|++++||+.++++|||.+||+||||+|||+|.+|||
T Consensus 395 ~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 395 DGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred CCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCc
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 579 (876)
|||||||||||+++|||||||||||||||+++|+.|++.+++..+++|+|+||||+
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999988999999999996
No 28
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-85 Score=844.91 Aligned_cols=775 Identities=15% Similarity=0.163 Sum_probs=535.6
Q ss_pred chHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (876)
Q Consensus 41 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (876)
.++.+.+....++..+..++..++..+..++.| ++++.+++.+... + ..........+.+++..++..++...
T Consensus 232 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P---~ll~~~v~~l~~~--~--~~~~~g~~l~~~l~~~~~~~~~~~~~ 304 (1560)
T PTZ00243 232 LSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLP---VLLKYFVKFLDAD--N--ATWGRGLGLVLTLFLTQLIQSVCLHR 304 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCC--C--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345444444444444444444445555556666 4677888765221 1 10010011111112222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (876)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~-~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (876)
..+.....+.++...++..+|+|+++.+...+.. +.++|+++|++++|++++++++. .+..++...+.+++++++++.
T Consensus 305 ~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~ 383 (1560)
T PTZ00243 305 FYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSR 383 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555556666788888877766542 13789999999999999999872 233333334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 002817 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (876)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (876)
+....+++.++++++++.+..++.++..+..++..+..++..+.++|.++|||+||+++||+.+.+++++.++++.+..+
T Consensus 384 ~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~ 463 (1560)
T PTZ00243 384 LVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLR 463 (1560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43445666666666677777778888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 002817 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (876)
Q Consensus 280 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l 359 (876)
+.....++...+....+.+. .++.+++|.+.++.+|++.+|+++.++..+..|+..++..+..+.++.+|++||.+++
T Consensus 464 ~~~~~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL 541 (1560)
T PTZ00243 464 DVQLARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877666555555444 3334567778889999999999999999999999999999999999999999999999
Q ss_pred ccccccc----cC-c---------c--c--------------CCC---------------------------CCCCcccE
Q 002817 360 ERDTMSK----AS-S---------K--T--------------GRK---------------------------LDKLSGHI 382 (876)
Q Consensus 360 ~~~~~~~----~~-~---------~--~--------------~~~---------------------------~~~~~~~I 382 (876)
+.++... +. . . . +.+ .....+.+
T Consensus 542 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1560)
T PTZ00243 542 ECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSV 621 (1560)
T ss_pred cCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 7654100 00 0 0 0 000 00011357
Q ss_pred EEEeEEEECCCC-------------------------------------CCCccccceeEEecCCCEEEEEcCCCccHHH
Q 002817 383 EFKDVSFCYPSR-------------------------------------PDVAIFDKFCLDIPAGKIVALVGGSGSGKST 425 (876)
Q Consensus 383 ~~~~vsf~y~~~-------------------------------------~~~~vL~~isl~i~~G~~vaiVG~sGsGKST 425 (876)
.++|++|+||.. .+.++|+|+||+|++||+++|+||+||||||
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKST 701 (1560)
T PTZ00243 622 VVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKST 701 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHH
Confidence 888888876521 1235899999999999999999999999999
Q ss_pred HHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhc
Q 002817 426 VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISN 505 (876)
Q Consensus 426 ll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~ 505 (876)
|+++|+|+++|++|+|.+++ +||||||+||+|++||+|||.|+.+ .+.+++.++++.++++++++.
T Consensus 702 LL~~i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 702 LLQSLLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred HHHHHhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999998754 6999999999999999999999874 345667778888888889999
Q ss_pred CchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEcCCchhhhh
Q 002817 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRN 584 (876)
Q Consensus 506 lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~ 584 (876)
+|+|++|.+||+|.+|||||||||+||||+|++|+|||||||||+||+++++.+ ++++....+++|+|+|||+++.++.
T Consensus 768 l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ 847 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR 847 (1560)
T ss_pred hhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999999999999999987777 5666666679999999999999999
Q ss_pred cCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCccccccccccCCccccCCCCccchh-
Q 002817 585 ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKE- 663 (876)
Q Consensus 585 aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 663 (876)
||+|++|++|+|+++|+|+|+++. +.|.++........+..+.....+.......+....................+
T Consensus 848 ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1560)
T PTZ00243 848 ADYVVALGDGRVEFSGSSADFMRT--SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDG 925 (1560)
T ss_pred CCEEEEEECCEEEEecCHHHHHhC--hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999864 56777765432111100000000000000000000000000000000000000
Q ss_pred -h-hcccCCCCCCCccccccchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh---hhhhh
Q 002817 664 -S-VLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTT---QREVK 738 (876)
Q Consensus 664 -~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~ 738 (876)
. .........+|++..+.+++ ..|+.|+...+........++.++...+.....++|+.+|.. .....
T Consensus 926 ~~~~~~~~~l~~~e~~~~g~v~~-------~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~ 998 (1560)
T PTZ00243 926 AALDAAAGRLMTREEKASGSVPW-------STYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAA 998 (1560)
T ss_pred cccccccchhhhHHHHhcCcccH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 0 00000011122233344442 334556553221111111111111222233344555533321 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHH
Q 002817 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRS 818 (876)
Q Consensus 739 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l 818 (876)
.|.++|++++++.+++.+++.+.....+.++++++|+.+|++++++|++||| +||+|+|+|||++|++.+|..++..+
T Consensus 999 ~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l 1076 (1560)
T PTZ00243 999 TYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSY 1076 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHH
Confidence 5778888888888888888888888888899999999999999999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002817 819 TILIQNFGLVTASFVIAFILNWRITLVVVATY 850 (876)
Q Consensus 819 ~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~ 850 (876)
..++..++.++++++++++.+|++++++++++
T Consensus 1077 ~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~ 1108 (1560)
T PTZ00243 1077 LYLLQCLFSICSSILVTSASQPFVLVALVPCG 1108 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988886555544433
No 29
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.6e-87 Score=795.29 Aligned_cols=565 Identities=27% Similarity=0.374 Sum_probs=476.9
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (876)
Q Consensus 43 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (876)
+++++++.+++ +..+.+..++.++..++.+..+++++.++|.+.... ......+.++++.++..+..++..
T Consensus 7 ~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 7 YARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--------DIFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554333 223334444445555555566678889999754210 111111222222233333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (876)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (876)
....+...++..++|.++++++++.|..+|++ .++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566667779999999999999998 59999999999999999988888888888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (876)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 282 (876)
.+++++++++|+..++..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL 236 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888889999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 002817 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (876)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~ 362 (876)
...+....+..++..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+..+..+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~ 316 (588)
T PRK13657 237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777666666666777778889999999999999999998888888888899999999999999999999999999875
Q ss_pred cccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 002817 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (876)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~ 442 (876)
++.+.. ......+...+.|+++||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 317 PDVRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred cccCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 442211 1111112234579999999999743 4699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 443 idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
+||+|+++++.+++|++|+||||+|++|+|||||||++|+|+++++++++||+.+++++++.++|+|+||.+||+|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecCh
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 602 (876)
|||||||+||||++++|||+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|+|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHHH
Q 002817 603 EELISNPNSAYAALVQLQE 621 (876)
Q Consensus 603 ~eL~~~~~g~y~~l~~~~~ 621 (876)
+||+++ ++.|++++..+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHHC-CChHHHHHHHhh
Confidence 999987 799999997653
No 30
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.4e-87 Score=790.66 Aligned_cols=539 Identities=24% Similarity=0.344 Sum_probs=472.2
Q ss_pred HHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhh
Q 002817 74 VFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFD 153 (876)
Q Consensus 74 ~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~ 153 (876)
+.|++++.++|.+.... . . ......+...++++.++..++.++..++....+.++..++|..+|++++++|+++|+
T Consensus 13 ~~p~~~~~iid~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 13 IPPKVVGIIVDGVTEQH--M-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHhccCC--c-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 34467888999754211 0 0 111222233344444556667777777778889999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 154 TEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGGMYAYVTIGLIAR 232 (876)
Q Consensus 154 ~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~ 232 (876)
+ .++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.++.++..++
T Consensus 89 ~-~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 167 (569)
T PRK10789 89 R-HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKL 167 (569)
T ss_pred C-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 499999999999999999888777788887766666666555 57999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 233 VRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH 312 (876)
Q Consensus 233 ~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 312 (876)
.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+....+......+..++++++|++++.
T Consensus 168 ~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~ 247 (569)
T PRK10789 168 AQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247 (569)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999888888888877776666666666666778889999999
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECC
Q 002817 313 KHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYP 392 (876)
Q Consensus 313 ~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~ 392 (876)
+|.+|+|.++++..+......|+..+...+..+.+++++.+|+.++++.+++.+.. ....+..++.|+|+||+|+|+
T Consensus 248 ~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~v~~~y~ 324 (569)
T PRK10789 248 NGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNIRQFTYP 324 (569)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEEEEEECC
Confidence 99999999998888888888899999999999999999999999999876442211 111122346799999999997
Q ss_pred CCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc
Q 002817 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472 (876)
Q Consensus 393 ~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~ 472 (876)
.. +.++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++
T Consensus 325 ~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 403 (569)
T PRK10789 325 QT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD 403 (569)
T ss_pred CC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc
Confidence 53 35699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 002817 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (876)
Q Consensus 473 TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD 552 (876)
||+|||++|+++++++++++|++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+|+|||||||+||
T Consensus 404 ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 404 TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHH
Q 002817 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622 (876)
Q Consensus 553 ~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~ 622 (876)
+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+++|+|+||+++ +|.|+++++.|..
T Consensus 484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 99999999999998889999999999999999999999999999999999999987 8999999987753
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.2e-86 Score=787.26 Aligned_cols=565 Identities=26% Similarity=0.333 Sum_probs=481.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (876)
Q Consensus 43 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (876)
+++++++.++++ ..+.++++++++..++.+..|+++++++|.+.... . . ....+.+++..++..+..++..
T Consensus 7 ~~~l~~~l~~~k-~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 7 YVRALSYLNVHK-NRVLLIVIANITLAAITIAEPILFGRIIDAISSKS----D---V-LPTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----c---H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445666655443 33445566666667777777889999999764211 0 0 1111112222233333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (876)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (876)
......+.++..++|.++|++++++|+++|++ .++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDW 156 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556667779999999999999998 48999999999999999999988888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (876)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 282 (876)
.+++++++++|+..++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (585)
T TIGR01192 157 RLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVL 236 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888999999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 002817 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (876)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~ 362 (876)
...++...+..++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~ 316 (585)
T TIGR01192 237 DWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777666666666667778889999999999999999988877777778899999999999999999999999999865
Q ss_pred cccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 002817 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (876)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~ 442 (876)
++.++.. .....+...+.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 317 FQREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred ccccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 4422111 111112234579999999999742 3589999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 443 idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
+||.|+++++.+++|++++||||+|++|++||+|||++|.|+++++++++||+.+++++++.++|+|+||.+||+|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecCh
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 602 (876)
|||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHHH
Q 002817 603 EELISNPNSAYAALVQLQE 621 (876)
Q Consensus 603 ~eL~~~~~g~y~~l~~~~~ 621 (876)
+|++++ +|.|+++++.+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHHHC-CChHHHHHHhCc
Confidence 999997 899999998663
No 32
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.7e-86 Score=788.73 Aligned_cols=555 Identities=35% Similarity=0.500 Sum_probs=481.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (876)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 138 (876)
.+.+++.++.+++....|++++.++|...... + ..........++++.++..++.+++.+.....+.++..++|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 95 (576)
T TIGR02204 21 LAALVALLITAAATLSLPYAVRLMIDHGFSKD-S----SGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRR 95 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666778889999743211 1 111122223333344445566777777888899999999999
Q ss_pred HHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA 218 (876)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~ 218 (876)
.+++++++.|.++|++ .++|++++|+++|++.+++++...+..++..+..+++.++++++++|.+++++++.+|+.+++
T Consensus 96 ~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~ 174 (576)
T TIGR02204 96 AVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLP 174 (576)
T ss_pred HHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 489999999999999999999888888899999999999999999999999999888988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 219 GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (876)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 298 (876)
..++.+..++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+.....+....+..++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (576)
T TIGR02204 175 ILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFG 254 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999999999999999999999988888777776666655555555556
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCC
Q 002817 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKL 378 (876)
Q Consensus 299 ~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 378 (876)
..++++++|++++..|.+|+|.++++..+......|+..++..+..+.+++++.+|+.++++.+++.+..........+.
T Consensus 255 ~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 334 (576)
T TIGR02204 255 AIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPL 334 (576)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCC
Confidence 66677888999999999999999888877777888999999999999999999999999998654422111111111122
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
.+.|+|+||+|+||+++++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred CceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 35799999999998643457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+|+||||+|++|++||||||++|+|+.++++++++|+.++++++++++|+|+||.+||+|.+|||||||||+||||++++
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHH
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~ 618 (876)
|||||||||||+||.++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|+|++++ ++.|++|++
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~ 573 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLAR 573 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHh
Confidence 9999999999999999999999999998889999999999999999999999999999999999999987 899999986
Q ss_pred HH
Q 002817 619 LQ 620 (876)
Q Consensus 619 ~~ 620 (876)
.|
T Consensus 574 ~~ 575 (576)
T TIGR02204 574 LQ 575 (576)
T ss_pred hc
Confidence 54
No 33
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-85 Score=846.70 Aligned_cols=508 Identities=20% Similarity=0.273 Sum_probs=435.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002817 105 LDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFM 184 (876)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~ 184 (876)
..+++++++..++.++..+++.+.+.+...++|.++++++++.|++||++ .++|+++||+++|++.+++.+...+..++
T Consensus 1009 ~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~ 1087 (1522)
T TIGR00957 1009 SVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFM 1087 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666677777777778888899999999999999999999999998 59999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHH
Q 002817 185 HYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAV 264 (876)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~ 264 (876)
..++.+++.++++++.+|.++++++.++++..++..++.+..+...+...+..+...+.+.|+++|+++||+|++|+.+.
T Consensus 1088 ~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~ 1167 (1522)
T TIGR00957 1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFI 1167 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHH
Confidence 99999999999988888877666655555555555555555555555566667778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002817 265 KVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH-KHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343 (876)
Q Consensus 265 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 343 (876)
+++.+..+...+...+......+......++. .+++++.+.+.+. .+.+++|.+..++.+......|+..+...+.
T Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957 1168 HQSDLKVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777765554444444333333322 2233344444443 5789999988887787778889999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccCcccCCC--CCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCc
Q 002817 344 AFIRAKAAAYPIFEMIERDTMSKASSKTGRK--LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGS 421 (876)
Q Consensus 344 ~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGs 421 (876)
.+..+.+|++|+.++++.+++.+...+...+ ..+.+|.|+|+||+|+|+++. +++|+|+||+|+|||++||||+|||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCC
Confidence 9999999999999999876543211111111 123567899999999997542 4699999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhh
Q 002817 422 GKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501 (876)
Q Consensus 422 GKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~ 501 (876)
|||||+++|+|+|+|++|+|.+||+||+++++++||++|+||||||+||+|||||||.... +++++|+++|++.+++++
T Consensus 1324 GKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~ 1402 (1522)
T TIGR00957 1324 GKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKT 1402 (1522)
T ss_pred CHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHH
Confidence 9999999999999999999999999999999999999999999999999999999998332 689999999999999999
Q ss_pred hHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchh
Q 002817 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (876)
Q Consensus 502 ~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 581 (876)
||.++|+||||+|||+|.+||||||||||||||++++|+||||||||||||++||+.|++.|++..+++|+|+||||+++
T Consensus 1403 ~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred HHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHH
Q 002817 582 IRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (876)
Q Consensus 582 i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~ 619 (876)
+.+||+|+|||+|+|+|.|+|+||+++ +|.|++|++.
T Consensus 1483 i~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999999999999999999998 7999999875
No 34
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8e-85 Score=768.74 Aligned_cols=524 Identities=23% Similarity=0.300 Sum_probs=455.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (876)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 138 (876)
.++++++++.+++.+..|+++++++|.+..... . ..........+++++++..++.++..+...+.+.++..++|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAGE---P-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777889999997631110 1 122233344455556667788888888899999999999999
Q ss_pred HHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA 218 (876)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~ 218 (876)
++|++++++|..+|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++++.++.+|+..++
T Consensus 82 ~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 82 RLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 599999999999999999999988889999988889999999999999999999888988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 219 GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (876)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 298 (876)
...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....+....+..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888999999999999999999999999999999999999888888777777666665555555555
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCC
Q 002817 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKL 378 (876)
Q Consensus 299 ~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 378 (876)
..++++.++++.+..|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++..+ . .......
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~--~-~~~~~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG--K-APVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--C-cCCCCCC
Confidence 555555566666778999999998887777777889999999999999999999999999985432211 1 1111112
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
.+.|+|+||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 3579999999999854 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+|+||+|||++|++||||||++|.++++++++.+||+.+++++|++++|+||||.+||+|.+|||||||||+||||+++|
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEE
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
|+|+||||||||||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999986
No 35
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-87 Score=709.86 Aligned_cols=490 Identities=31% Similarity=0.414 Sum_probs=428.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 002817 124 CWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVW 202 (876)
Q Consensus 124 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 202 (876)
.+...++.....+-...|.|+.++++.|+-++ .+|.+...+......++..+...+...+..++-+....+++ ..++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 45566777778888889999999999999884 88988888877777777776666666666665555444444 45899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (876)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 282 (876)
+.++++++++.+++++.....-.-....+...++.++++....+++-+..+||.|+.|+.+..+|.+.++.+.+...|..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99998888887777766555554445566667777888889999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 002817 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (876)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~ 362 (876)
...++.......+...........+...+..|.+|+|+++..-.+...+..|+..++..+..+.+++.-.++.+++++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 66665554444555555556667777788899999999887777778888999999999999999999999999999887
Q ss_pred cccccCcccCCCCC-CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 363 TMSKASSKTGRKLD-KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 363 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
.+..+. +..++.. ...|.|.|+||+|.|.+ ..++|+|+||++++|+++|+|||||+||||++++|.||||+++|.|
T Consensus 244 ~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVSDA-PDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhccC-CCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 665432 2222233 33578999999999974 5689999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
.+||+|+++...+++|+.||.||||..|||+|+..||.||+|+++++|+..|++.++.|+||++||+||||.|||||-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
|||+|||+||||+++++|+||+|||||||||++||+.||.+|++..+|+|+++|||||||+-+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHH
Q 002817 602 HEELISNPNSAYAALVQ 618 (876)
Q Consensus 602 ~~eL~~~~~g~y~~l~~ 618 (876)
|+||+++ +|.|++||.
T Consensus 481 h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHHc-CChHHHHhc
Confidence 9999998 999999985
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-84 Score=836.52 Aligned_cols=509 Identities=21% Similarity=0.270 Sum_probs=403.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHH
Q 002817 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (876)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~ 182 (876)
+.+.+++++++..++.+++.+++.+.+.+...++|.+++++++++|++||++ +++|+++||+++|++.+++.+...+..
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666667777788888888889999999999999999999999999998 599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 002817 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL-AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (876)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~ 261 (876)
++..++.+++.++++++++|...+ .++.++++.. +..++.+..+...+......+...+.+.|+++|+++||+|++|+
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~-~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLW-AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 999999888888888888773322 2222222221 12223333333333334445667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCHHHHHHHHHHHHHHH
Q 002817 262 KAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI---------SNGGESFTTMLNVVIAG 332 (876)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------lt~g~~~~~~~~~~~~~ 332 (876)
++.+++.+..+...+...-......+...... .+..+++++.+.+.+..+. .++|.+++ +.....
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~---~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~~ 1186 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLE---TLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNIT 1186 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHHH
Confidence 88777766555544332221111111111111 1121222223333343321 23333333 223334
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccC--CCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCC
Q 002817 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTG--RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAG 410 (876)
Q Consensus 333 ~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G 410 (876)
.++..+......+..+.+|.+|+.++++.+++.+...+.. ....+.+|.|+|+||+|+|+++ .+++|+|+||+|+||
T Consensus 1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~G 1265 (1622)
T PLN03130 1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPS 1265 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCC
Confidence 4555556667778899999999999998765532111111 1112346789999999999643 347999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHH
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI 490 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v 490 (876)
|++|||||||||||||+++|+|+|+|++|+|.|||+|++++++++||++|++|||||.||+|||||||.+++ +++++|+
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei 1344 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADL 1344 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 6899999
Q ss_pred HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q 002817 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570 (876)
Q Consensus 491 ~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~ 570 (876)
++||+.+++++||+++|+||||+|||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++
T Consensus 1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130 1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHH
Q 002817 571 TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 571 T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
|+|+||||++++++||+|+|||+|+|+|.|+|+||+++++|.|++|++.+.
T Consensus 1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999875799999997654
No 37
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-84 Score=706.22 Aligned_cols=555 Identities=22% Similarity=0.287 Sum_probs=455.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 54 DYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQA 133 (876)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (876)
++..+.++++++++..+....+..+-|++|..-... +....-.+...+...=++++...+..|+.....+....++.
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia---g~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA---GLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344556666666666565555556778888753211 11000011112222334567778888888888889999999
Q ss_pred HHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 134 AKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVP 213 (876)
Q Consensus 134 ~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p 213 (876)
.++|.++|+++...+...... .++||++||+..|++.+++.+-..+...+..+..+.+..+.+-+++|.+++.....+.
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999988887 6999999999999999999999888888888887777777777888988766554444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 214 LI-ALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSM 292 (876)
Q Consensus 214 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 292 (876)
+. +++-.++.+..++..++..+..+...+...|.++|....+.||.++.+.+.+++.-+.+.+...|...+.++...+.
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33445556666677777777788888999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhccccccccCcc
Q 002817 293 HCVLFLSWS-LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA-PDITAFIRAKAAAYPIFEMIERDTMSKASSK 370 (876)
Q Consensus 293 ~~~~~~~~~-~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~ 370 (876)
.++..+..+ .++|.+. .+..|..+......+++.+.....++..+. ..+....+...|+.|+.++++++++...+ .
T Consensus 250 ~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~ 327 (573)
T COG4987 250 LLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-D 327 (573)
T ss_pred HHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-c
Confidence 777666555 3444443 344555553222222222222222333333 45677888999999999999988775432 1
Q ss_pred cCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 002817 371 TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (876)
Q Consensus 371 ~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~ 450 (876)
.+.+.....++++||||+||+. +.++|+|+||++++||++||+|+|||||||++++|.|-|+|++|+|.++|.|++.
T Consensus 328 --~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 328 --EQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred --cccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 1111111279999999999964 4679999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 451 LDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 451 ~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
++.+.+|+.|++++|.++||++|+|||+++++|+++|||+++|++.+++++++++.|+|++|.+||.|.+||||||||+|
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
|||++++|+|++||||||.+||++||+++.+.|.+..+|||+|+||||+..++.+|+|+|||+|+++|+|+|+||+++ +
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-N 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred chHHHHHH
Q 002817 611 SAYAALVQ 618 (876)
Q Consensus 611 g~y~~l~~ 618 (876)
|.|+++++
T Consensus 564 g~~~~l~q 571 (573)
T COG4987 564 GRYKRLYQ 571 (573)
T ss_pred cHHHHHhc
Confidence 99999985
No 38
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-83 Score=754.57 Aligned_cols=527 Identities=21% Similarity=0.259 Sum_probs=451.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 65 ACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSM 144 (876)
Q Consensus 65 ~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l 144 (876)
+++..+.....|+++++++|.+.... + ......+...++++.++..++.+++.++..+.+.++..++|.++++++
T Consensus 15 ~~~~~~~~l~~p~~~~~iid~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 89 (544)
T TIGR01842 15 SFVINILMLAPPLYMLQVYDRVLTSG-S----VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAAS 89 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445567889999764211 1 112222333444455566677888888888999999999999999999
Q ss_pred HcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 145 LNQDISLFDTEASTGEVISAITSDIIVVQDALSE-KVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYA 223 (876)
Q Consensus 145 ~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~ 223 (876)
+++|+. ..++..+++++|++.+++.+.. .+..++..++. ++.++++++++|.+++++++.+|+++++..+..
T Consensus 90 l~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~ 162 (544)
T TIGR01842 90 FSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVLVGLALLNN 162 (544)
T ss_pred hcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999983 2356788899999999998877 34444444444 444567889999999998888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 224 YVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLL 303 (876)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 303 (876)
+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....+....+..++..+..+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (544)
T TIGR01842 163 RATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLV 242 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88788888888899999999999999999999999999999999999999888888887777777766666666666778
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEE
Q 002817 304 VWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIE 383 (876)
Q Consensus 304 ~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~ 383 (876)
+++|++++.+|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++.+++.++. ...+..++.|+
T Consensus 243 ~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~~i~ 318 (544)
T TIGR01842 243 LGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEGHLS 318 (544)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCCeEE
Confidence 88999999999999999999888888888899999999999999999999999999865543211 11122345799
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEE
Q 002817 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (876)
Q Consensus 384 ~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V 463 (876)
++||+|+||+. +.++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||
T Consensus 319 ~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 397 (544)
T TIGR01842 319 VENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397 (544)
T ss_pred EEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEe
Confidence 99999999743 34689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 002817 464 NQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543 (876)
Q Consensus 464 ~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~Ill 543 (876)
||+|++|++|++|||+++.+++++++++++|+.+++++++++||+|+||.+||+|.+|||||||||+||||+++||+|||
T Consensus 398 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred cCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 544 LDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 544 LDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||||||+||+++++.+.++|+++. +++|+|+||||+++++.||+|++|++|++++.|+|+|++++
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999875 68999999999999999999999999999999999999753
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.9e-83 Score=822.50 Aligned_cols=513 Identities=19% Similarity=0.231 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002817 106 DFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMH 185 (876)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~ 185 (876)
.++++.++..++.++..+.....+.+...++|..+++++++.|++||++ .++|+++||+++|++.+++.+...+..++.
T Consensus 1003 ~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~ 1081 (1560)
T PTZ00243 1003 VYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQ 1081 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333334444444455555556677778899999999999999999998 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHH
Q 002817 186 YISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVK 265 (876)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~ 265 (876)
.++.+++.++++++.+|.+.++++.++.+...+..++.+..+...+......+...+.++|+++|+++||+|++|+.+.+
T Consensus 1082 ~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~ 1161 (1560)
T PTZ00243 1082 CLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQ 1161 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHH
Confidence 99999999999998888544333222222233333444444444444555667778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002817 266 VYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV--VHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343 (876)
Q Consensus 266 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 343 (876)
++.+..+...+...+......+......++..+..+++.+++.+. ...+.+++|.+..++.+......++..+...+.
T Consensus 1162 ~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~ 1241 (1560)
T PTZ00243 1162 EALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVA 1241 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888777666555444444444444333333333333332 233457888776666666667778888888999
Q ss_pred HHHHHHHHHHHHHHHhccccccccCc-------------------------cc-CC---CCCCCcccEEEEeEEEECCCC
Q 002817 344 AFIRAKAAAYPIFEMIERDTMSKASS-------------------------KT-GR---KLDKLSGHIEFKDVSFCYPSR 394 (876)
Q Consensus 344 ~~~~a~~a~~ri~~~l~~~~~~~~~~-------------------------~~-~~---~~~~~~~~I~~~~vsf~y~~~ 394 (876)
.+.+++.|.+|+.++++..++.+... +. .. +.++..|.|+|+||+|+|++.
T Consensus 1242 ~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~ 1321 (1560)
T PTZ00243 1242 TVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG 1321 (1560)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC
Confidence 99999999999999996433211000 00 00 011234789999999999753
Q ss_pred CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccH
Q 002817 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI 474 (876)
Q Consensus 395 ~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TI 474 (876)
.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+||+++++++||++||||||||+||+|||
T Consensus 1322 -~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTI 1400 (1560)
T PTZ00243 1322 -LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTV 1400 (1560)
T ss_pred -CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccH
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC-CCEEEEeCCCCCCCH
Q 002817 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN-PSILLLDEATSALDA 553 (876)
Q Consensus 475 reNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~-p~IllLDE~tSaLD~ 553 (876)
||||..+ ++++++|+++||+.+++++||.++|+||||.|||+|.||||||||||||||||+++ |+|||||||||+||+
T Consensus 1401 reNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~ 1479 (1560)
T PTZ00243 1401 RQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479 (1560)
T ss_pred HHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCH
Confidence 9999876 47899999999999999999999999999999999999999999999999999996 899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHH
Q 002817 554 ESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 554 ~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
++|+.|++.|++..+++|+|+||||++++++||+|+||++|+|+|.|+|+||+++++|.|++|++.+.
T Consensus 1480 ~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1480 ALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999998999999999999999999999999999999999999999865899999998764
No 40
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-83 Score=825.39 Aligned_cols=510 Identities=20% Similarity=0.266 Sum_probs=407.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHH
Q 002817 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (876)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~ 182 (876)
+...+++++++..++.+++.++..+.+.+...++|.++++++++.|++||++ .++|+++||+++|++.+++.+...+..
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 4555666677777888888888889999999999999999999999999998 599999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 002817 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL--AG-GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAG 259 (876)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~ 259 (876)
++..++.+++.++++++.++...++ ++|+.++ .. .++.+..+...+......+...+.+.|+++|+++||+|++
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~ 1107 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTISLWA---IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKA 1107 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCc
Confidence 8888888888888877776533222 2233222 22 2222333334444455566777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-----HHHHHHHHHHHHHHHH
Q 002817 260 EDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK-HISN-----GGESFTTMLNVVIAGL 333 (876)
Q Consensus 260 e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~lt-----~g~~~~~~~~~~~~~~ 333 (876)
|+++.+++.+..+...+..........+... ....+..+++++.+.+.+.. +.+. ++.+..++.+......
T Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 1184 (1495)
T PLN03232 1108 YDRMAKINGKSMDNNIRFTLANTSSNRWLTI---RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITT 1184 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 9988887777655554443322222111111 11112222222333333332 3221 1111112233334455
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccC--CCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCC
Q 002817 334 SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTG--RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGK 411 (876)
Q Consensus 334 ~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~ 411 (876)
++..+...+..+..+.+|.+|+.++++.+++.+...... .+..+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||
T Consensus 1185 ~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Ge 1263 (1495)
T PLN03232 1185 LLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSE 1263 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCC
Confidence 777788888899999999999999998765532211111 1112345789999999999643 3579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~ 491 (876)
++|||||||||||||+++|+|+|+|++|+|.|||+|++++++++||++|+||||||+||+|||||||.+++ +++++|++
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~ 1342 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLW 1342 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 68999999
Q ss_pred HHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 002817 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571 (876)
Q Consensus 492 ~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T 571 (876)
+||+.++++|||+++|+|+||+|||+|.+||||||||||||||++++|+||||||||||||++||+.|+++|++..+++|
T Consensus 1343 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~T 1422 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422 (1495)
T ss_pred HHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHH
Q 002817 572 TVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 572 ~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
+|+||||++++++||+|+||++|+|+|.|+|+||++++++.|++|++.+.
T Consensus 1423 vI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1423 MLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999885569999997654
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.2e-78 Score=775.82 Aligned_cols=501 Identities=18% Similarity=0.246 Sum_probs=406.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002817 112 VAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFL 191 (876)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~ 191 (876)
++..++.+++.+++.+.+.+...++|.++++++++.|++||++ .++|+++||+++|++.+++.+...+..++..++.++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i 1014 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVL 1014 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777888899999999999999999999999998 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 002817 192 GGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEAL 271 (876)
Q Consensus 192 ~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~ 271 (876)
+.++++++++|.++++++.++.+++++..++.+..+...+......+...+.+.|+++|+.+||+|++|+.+.+++.+..
T Consensus 1015 ~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~ 1094 (1490)
T TIGR01271 1015 GAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKAL 1094 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999998876543333333333334444444444444555566777899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002817 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSW--SLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAK 349 (876)
Q Consensus 272 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 349 (876)
+...+..........+......++..+.. +++++++. ...+.|.+-.++.+...+..++..+...+..+..++
T Consensus 1095 ~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~ 1169 (1490)
T TIGR01271 1095 NLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLM 1169 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76544333322222222222222111111 11112222 223444433333344444556777777788899999
Q ss_pred HHHHHHHHHhccccccccCccc----------------CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEE
Q 002817 350 AAAYPIFEMIERDTMSKASSKT----------------GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIV 413 (876)
Q Consensus 350 ~a~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~v 413 (876)
.|.+|+.++++.+++....... .++..+..|.|+|+||+|+|++. .+++|+|+||+|+|||++
T Consensus 1170 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gekv 1248 (1490)
T TIGR01271 1170 RSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRV 1248 (1490)
T ss_pred HHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEE
Confidence 9999999999776543211000 00112345789999999999753 467999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHH
Q 002817 414 ALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA 493 (876)
Q Consensus 414 aiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a 493 (876)
||||+||||||||+++|+|+|+ ++|+|+|||+|++++++++||++|+||||||+||+|||||||.... +++++++++|
T Consensus 1249 aIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~a 1326 (1490)
T TIGR01271 1249 GLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKV 1326 (1490)
T ss_pred EEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHH
Confidence 9999999999999999999998 7999999999999999999999999999999999999999997653 6799999999
Q ss_pred HHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 002817 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573 (876)
Q Consensus 494 ~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I 573 (876)
|+.++++++|.++|+|+||+|||+|.+|||||||||||||||+++|+|||||||||+||.+|++.|++.|++..+++|+|
T Consensus 1327 L~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI 1406 (1490)
T TIGR01271 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVI 1406 (1490)
T ss_pred HHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHH
Q 002817 574 VVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622 (876)
Q Consensus 574 ~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~ 622 (876)
+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|++|++.+..
T Consensus 1407 ~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 99999999999999999999999999999999986 8999999987643
No 42
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.3e-78 Score=714.92 Aligned_cols=534 Identities=19% Similarity=0.158 Sum_probs=434.0
Q ss_pred hHHHHHHhhc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFAD-FYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (876)
Q Consensus 42 ~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (876)
.+++++++++ ++ +..+.++++++++.++.....+.+++.+++.... . . ... ...++++.++..++.++
T Consensus 4 ~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~----~-~-~~~----~~~~~~~~~~~~~~~~~ 72 (555)
T TIGR01194 4 AIGEILALLRSPF-PAITAFSIALGLAGGLAIIALLASINNAIHEENF----L-G-QGS----LFSFGGLCLLALLFRIG 72 (555)
T ss_pred hHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----c-c-chH----HHHHHHHHHHHHHHHHH
Confidence 3556666655 43 3334455555555555555565667777663110 0 0 001 11233344556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (876)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (876)
..++....+.++..++|.++|++++++|+++|++ .++|++++|+++|++.+++++.. ++.++..++++++.+++++++
T Consensus 73 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 150 (555)
T TIGR01194 73 ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL 150 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999998 49999999999999999999864 778888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHH
Q 002817 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED--KAVKVYKEALSNTYKYG 278 (876)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~ 278 (876)
+|.+++++++.+|+.+++..+..++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.+++.+..++..+..
T Consensus 151 ~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
T TIGR01194 151 SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999988888888877777777788888888899999999999999999999999954 56788888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002817 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (876)
Q Consensus 279 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~ 358 (876)
.+.....+....+..++..+...+.++++++. +.+|+|++++++.+......|+..+...+..+++++++++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~l 307 (555)
T TIGR01194 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554444433333333333444555432 689999999888888888899999999999999999999999999
Q ss_pred hccccc---cccCcccCC----CCCCCcccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHH
Q 002817 359 IERDTM---SKASSKTGR----KLDKLSGHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429 (876)
Q Consensus 359 l~~~~~---~~~~~~~~~----~~~~~~~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~l 429 (876)
++.+++ ..+...... .+....+.|+|+||+|+|++.+ +.++|+|+||++++||++|||||||||||||+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred HhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHH
Confidence 863211 100000000 1112235799999999997532 2369999999999999999999999999999999
Q ss_pred HHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchh
Q 002817 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509 (876)
Q Consensus 430 L~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G 509 (876)
|+|+|+|++|+|.+||.|+++++.+++|++++||+|||++|++|+++|+ .++++++++.++|+.++++++++.+|+|
T Consensus 388 l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g 464 (555)
T TIGR01194 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGG 464 (555)
T ss_pred HhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccc
Confidence 9999999999999999999999999999999999999999999999995 4678999999999999999999999999
Q ss_pred hhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEcCCchhhhhcCE
Q 002817 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD-RV-MVGRTTVVVAHRLSTIRNADV 587 (876)
Q Consensus 510 ~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~-~~-~~~~T~I~ItHrls~i~~aD~ 587 (876)
|||. .+|||||||||+||||+++||||||||||||+||+++|+.+++.+. .. .+++|+|+||||+++++.||+
T Consensus 465 ~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 465 FSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 9995 7999999999999999999999999999999999999999988764 33 468999999999999999999
Q ss_pred EEEEeCCeEEEe
Q 002817 588 IAVVQGRKIVKT 599 (876)
Q Consensus 588 Iivl~~G~Ive~ 599 (876)
|++|++|+|+|.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999874
No 43
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-78 Score=736.05 Aligned_cols=510 Identities=22% Similarity=0.302 Sum_probs=424.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHH
Q 002817 102 KYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVG 181 (876)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~ 181 (876)
.+...|.+++++..++..++.+.+...+.+.+.++..+++++++|-|++|||. +++|.|+||+++|++.+++.+...+.
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHH
Confidence 45667777788888888888889999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 002817 182 NFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (876)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~ 261 (876)
.++..++.+++.++++.+..|.+.++++.+..+...+..++.+-.+...+-.....+-.-++++|+++|+.|||+|+.|+
T Consensus 938 ~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 938 FFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 99999999999999999999988766655555555555555544444444444445555679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCHHHHHHHHHHHHHHHHHHH
Q 002817 262 KAVKVYKEALSNTYKYGRKA---GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH--KHISNGGESFTTMLNVVIAGLSLG 336 (876)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~k~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~lt~g~~~~~~~~~~~~~~~l~ 336 (876)
+|.+++.+..+...+...-. .++.++.. .++..+ +++..+...+. .+..++|.+=-.+.+.+.+...+.
T Consensus 1018 rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rl---e~ig~~---~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~ 1091 (1381)
T KOG0054|consen 1018 RFIQENDELIDENSRAFFLSISANRWLAVRL---ELLGNL---VVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQ 1091 (1381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHH
Confidence 99999998887766653322 22222222 222211 11111222222 222567766445556666666677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccccccCccc--CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEE
Q 002817 337 QAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT--GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVA 414 (876)
Q Consensus 337 ~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~va 414 (876)
.+......+....+|.+|+.++.+.+++.+...+. .++.++.+|+|+|+|++.+|.+. .++|||||||+|+|||+||
T Consensus 1092 ~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVG 1170 (1381)
T KOG0054|consen 1092 WLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVG 1170 (1381)
T ss_pred HHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEE
Confidence 77778888889999999999999976551111111 23345678999999999999644 3679999999999999999
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHH
Q 002817 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494 (876)
Q Consensus 415 iVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~ 494 (876)
|||++|||||||+++|.|+.+|.+|+|.|||.||.++.+++||++++++||||.||+||||.|+-=- ++.+|+++++|+
T Consensus 1171 IVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~~IW~AL 1249 (1381)
T KOG0054|consen 1171 IVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDDEIWEAL 1249 (1381)
T ss_pred EeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998422 368999999999
Q ss_pred HHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 002817 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV 574 (876)
Q Consensus 495 ~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ 574 (876)
+.+++.++|+++|+|+|++|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|...||+.|++..+++|+|.
T Consensus 1250 e~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt 1329 (1381)
T KOG0054|consen 1250 ERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329 (1381)
T ss_pred HHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHH
Q 002817 575 VAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 575 ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
||||++|+.++|||+|||+|+|+|.|++.+|++++++.|+++....
T Consensus 1330 IAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1330 IAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred EeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence 9999999999999999999999999999999998788887666543
No 44
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.1e-75 Score=626.38 Aligned_cols=520 Identities=22% Similarity=0.271 Sum_probs=444.7
Q ss_pred HHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhh
Q 002817 73 PVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLF 152 (876)
Q Consensus 73 p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~ 152 (876)
...++++-++-|.+..... ...+.....+.+++.++..++.+++.....+.+.++..++...+|.+..+.+..-.
T Consensus 40 L~~~lyMLQVyDRVL~S~s-----~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~ 114 (580)
T COG4618 40 LTGPLYMLQVYDRVLPSRS-----VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR 114 (580)
T ss_pred HhhhHHHHHHHhhhccCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc
Confidence 3344566677787654321 12222233344445556677888899999999999999999999999987766542
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 153 DTEASTGEVISAITSDIIVVQDALSEK-VGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIA 231 (876)
Q Consensus 153 ~~~~~~G~l~s~~~~D~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~ 231 (876)
..|+=..- -+|.++++.|++.. +..++...| +++.+.++|.++++++++.++...+++.+..+--+..++-.+
T Consensus 115 ----~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~ 188 (580)
T COG4618 115 ----GSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLK 188 (580)
T ss_pred ----CCCccccc-hhhHHHHHHHHcCCCcchhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 23322222 36999999999874 444444445 566777889999999999998888888888887888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 232 RVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVV 311 (876)
Q Consensus 232 ~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 311 (876)
+..+...+.+..++-+..|.++|++.|......++|.+.+..+.+...+.+-..+....+...+-.+....++..|.|++
T Consensus 189 eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lv 268 (580)
T COG4618 189 EASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLV 268 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeE
Confidence 88888888999999999999999999999999999999999999998888887777777777777777788999999999
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEEC
Q 002817 312 HKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCY 391 (876)
Q Consensus 312 ~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y 391 (876)
.+|++|+|.+++......-...|+-.....+.++..++.|.+|+.+++...|...+ .-+.++.++.+.++++++.=
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~P 344 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAP 344 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecC
Confidence 99999999988764444444568888888999999999999999999987665322 23455667899999999976
Q ss_pred CCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc
Q 002817 392 PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA 471 (876)
Q Consensus 392 ~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~ 471 (876)
|+. ++++|+|+||++++||-+|||||||||||||.++|.|-++|++|.|++||-|+++++.+.+-++|||.|||..||.
T Consensus 345 Pg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 345 PGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred CCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 644 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 002817 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551 (876)
Q Consensus 472 ~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaL 551 (876)
|||+|||+=..++++.++|++|+++|+.||.|.+||+||||.|||.|.+|||||||||+||||+|.||.+++||||-|+|
T Consensus 424 GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNL 503 (580)
T COG4618 424 GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNL 503 (580)
T ss_pred CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCc
Confidence 99999998666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 552 DAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 552 D~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|.+.|+.+.++|...+ +|.|+|+||||.+.+..+|+|+||++|++...|+-+|.+++
T Consensus 504 D~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 504 DSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999998764 68999999999999999999999999999999999999875
No 45
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.8e-72 Score=661.95 Aligned_cols=471 Identities=18% Similarity=0.220 Sum_probs=376.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002817 115 LFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194 (876)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 194 (876)
.++.++..++..+.+.++..++|.+++++++++|+++|++ .++|++++|+++|++.++..+. .++.++..++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4566777788888999999999999999999999999998 4899999999999999998765 5778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH---HHHHHHHHHHH
Q 002817 195 IIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE---DKAVKVYKEAL 271 (876)
Q Consensus 195 ~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e---~~~~~~~~~~~ 271 (876)
+++++++|.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++++..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 9999999999999999999988888888888888888889999999999999999999996 4433 45678888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002817 272 SNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAA 351 (876)
Q Consensus 272 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a 351 (876)
++..+...+..........+......+...+.++++... +..+.+.+..+..+......|+..+...+..+++++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666655554444333222222222222222333221 11233332222233333457889999999999999999
Q ss_pred HHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHH
Q 002817 352 AYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431 (876)
Q Consensus 352 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~ 431 (876)
.+|+.++++.+++.+. . .....+ ..+.|+++||+|+||++ .++|+|+||+|+|||++|||||||||||||+++|+
T Consensus 296 ~~ri~~l~~~~~~~~~-~-~~~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 296 FNKLNKLALAPYKAEF-P-RPQAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHhcccccccc-c-cccccC-cCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999765432211 1 111111 12579999999999842 46999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhh
Q 002817 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511 (876)
Q Consensus 432 ~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~ 511 (876)
|+|+|++|+|.+||+|+++++.+++|++|+||+|||++|++|++|| + ++.+++++.++++..++.+++. +|+|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-
Confidence 9999999999999999999999999999999999999999999999 3 4566777776666655544433 23331
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEE
Q 002817 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 512 T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Ii 589 (876)
.+|.+|||||||||+||||+++||+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1489999999999999999999999999999999999999999999987654 4899999999999999999999
Q ss_pred EEeCCeEEEe-cChhHHh
Q 002817 590 VVQGRKIVKT-GSHEELI 606 (876)
Q Consensus 590 vl~~G~Ive~-Gt~~eL~ 606 (876)
+|++|+++|. |++.+-.
T Consensus 521 ~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 521 EMRNGQLSELTGEERDAA 538 (547)
T ss_pred EEECCEEEEecCCchhhh
Confidence 9999999987 5655443
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=5e-68 Score=635.20 Aligned_cols=530 Identities=15% Similarity=0.104 Sum_probs=431.8
Q ss_pred HHHHHHhhchhHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002817 43 LFKLFAFADFYDY----ILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (876)
Q Consensus 43 l~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (876)
+.++++++.++.+ .++++.+++.++..++....+++.+.++|.+... +...+...+..+.+.+++..++..+..
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~--~~~~f~~~l~~~~l~~~~~~~~~~~~~ 156 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR--SPRNFAWILFKWFLIAPPASFINSAIK 156 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566776655443 2455556666666677777788899999987532 111111112223333344445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002817 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (876)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (876)
++...+......++..++|..++++....++.+||+ ++|++.+|+++|++.+.+.+.+.+..++..++.+++.++.++
T Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 157 YLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676677777788888888888888888888888885 579999999999999999999999999999999998888888
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 002817 199 A-RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKY 277 (876)
Q Consensus 199 ~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 277 (876)
. ++|.+++++++.+|+..++..++.++..+..++.++..++.....+|.++|+++||+|+.|+.+.+++++..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cccCHHHHHHHHH-H---HHHHHHHHHhhhHHHHHHH
Q 002817 278 GRKAGLAKGLGLGSMHCVLFL--SWSLLVWYVSVVVH-K----HISNGGESFTTML-N---VVIAGLSLGQAAPDITAFI 346 (876)
Q Consensus 278 ~~k~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~-~----~~lt~g~~~~~~~-~---~~~~~~~l~~~~~~~~~~~ 346 (876)
..+...+.+...++..++... ..+..++.|...+. . |.+|.|.+++.+. + +..+..|+..+...+..++
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888887777666542 22223333342332 2 6789888665322 2 3345678899999999999
Q ss_pred HHHHHHHHHHHHhccccccccC-------cc--cC-------------CCCCCCcccEEEEeEEEECCCCCCCcccccee
Q 002817 347 RAKAAAYPIFEMIERDTMSKAS-------SK--TG-------------RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFC 404 (876)
Q Consensus 347 ~a~~a~~ri~~~l~~~~~~~~~-------~~--~~-------------~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~is 404 (876)
++.++.+|++++++.+++.+.. .+ +. .......+.|+++||+|+||++ .++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecce
Confidence 9999999999999764432100 00 00 0011123569999999999742 36999999
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC--
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-- 482 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~-- 482 (876)
|+|++||+++|+||||||||||+++|.|+++|++|+|.+++ |++|+||||+|++|++|++|||.++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999875 56899999999999999999999984
Q ss_pred -----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 002817 483 -----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557 (876)
Q Consensus 483 -----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~ 557 (876)
++.+++++.++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34678899999999999999988 999999987 57799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 558 ~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
.+.+.+++. ++|+|+||||+++++.||+|++|++
T Consensus 620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999774 8999999999999999999999973
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.1e-54 Score=460.20 Aligned_cols=238 Identities=26% Similarity=0.437 Sum_probs=222.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
|.|+|+|++|+|+.. ..++|+|+||+|++||+++|+||+|||||||+++|.|+++ ++|+|.+||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 3469999999999999999999999999999999999998 79999999999999999999999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|+||||+|++|++|++||+.... ..++++++++++..++.+++..+|+|++|.++|+|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999996432 35678999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHH
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~ 619 (876)
+|+||||||++||+++++.+++.|++..+++|+|+||||+++++.||+|++|++|+|++.|++++|++. ++.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988789999999999999999999999999999999999999996 6888888865
Q ss_pred HH
Q 002817 620 QE 621 (876)
Q Consensus 620 ~~ 621 (876)
..
T Consensus 237 ~~ 238 (275)
T cd03289 237 SD 238 (275)
T ss_pred cc
Confidence 53
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-52 Score=458.73 Aligned_cols=223 Identities=29% Similarity=0.478 Sum_probs=198.2
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCC--C
Q 002817 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIK--G 450 (876)
Q Consensus 378 ~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~--~ 450 (876)
..+.|+|+|++|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ |++|+|.+||+|+. +
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34689999999999742 3469999999999999999999999999999999999997 57999999999997 4
Q ss_pred CCHHHHhcceEEEeccCCCccccHHHHHHcCCC--CCCHHHHH-----HHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 451 LDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEIT-----RAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 451 ~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~v~-----~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
.+...+|+.++||||+||+|++||+|||.|+.. ..++++.+ ++++.++ |+++.++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCH
Confidence 556789999999999999999999999998742 23444433 3333333 566778999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
|||||++||||++++|+||||||||||||+++.+.++++|+++.+++|+|+|||+++++.. ||+|+||++|+|+|.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998889999999999999988 999999999999999999
Q ss_pred hHHhcC
Q 002817 603 EELISN 608 (876)
Q Consensus 603 ~eL~~~ 608 (876)
+++...
T Consensus 309 ~~l~~~ 314 (329)
T PRK14257 309 KTIFIH 314 (329)
T ss_pred HHHhcC
Confidence 999875
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-52 Score=406.11 Aligned_cols=216 Identities=33% Similarity=0.531 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC-CCCHHHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~-~~~~~~lr~~ 459 (876)
-|+++|++.+|.. ..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 46999999999999999999999999999999999999999999999998773 3489999999
Q ss_pred eEEEeccCCCc-cccHHHHHHcCC---CCCCHHHHH----HHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 460 IGLVNQEPALF-ATTIRENILYGK---DDATMEEIT----RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 460 i~~V~Q~~~Lf-~~TIreNI~~g~---~~~~~~~v~----~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
+|+|+|+..|| +-|+.|||.++. ...+.+|.+ +.++..++.| .......+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-----------ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-----------KADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-----------hhhhCccccCcHHHHHHHH
Confidence 99999999999 579999999985 223333332 2222333322 2233457999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~ 609 (876)
||||.-+|+|+|+|||||||||+.-..|.+.++++. .|.|.|+|||.+.+.++ ||||+.||+|+|+|+|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998875 58899999999999988 9999999999999999999999874
Q ss_pred C
Q 002817 610 N 610 (876)
Q Consensus 610 ~ 610 (876)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 3
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-50 Score=415.75 Aligned_cols=217 Identities=37% Similarity=0.610 Sum_probs=189.8
Q ss_pred EEEEeEEEECCCC--CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC---HHHH
Q 002817 382 IEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWL 456 (876)
Q Consensus 382 I~~~~vsf~y~~~--~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~---~~~l 456 (876)
|+++|||+.|+.. ....+|+|+||+|++||..+|||+||+|||||++++.++-.|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999852 2356899999999999999999999999999999999999999999999999888777 4567
Q ss_pred hcceEEEeccCCCcc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 457 RQQIGLVNQEPALFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
|++||+++|++.|++ .||.|||.|.-. ..+ .++|.+.+++.++.|.-.. ...+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-----------yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR-----------YPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-----------CchhcCcchhhHH
Confidence 889999999999997 799999999752 222 3345555666655544333 3479999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+|||||..+|+|||.|||||||||+|-+.|.+.|+++. -|-|+++|||.++.+++ |||+.||++|+|+|+|+-.|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999988764 48899999999999998 9999999999999999999999
Q ss_pred cCC
Q 002817 607 SNP 609 (876)
Q Consensus 607 ~~~ 609 (876)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 875
No 51
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-50 Score=403.60 Aligned_cols=217 Identities=37% Similarity=0.582 Sum_probs=190.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+|+|||+.|. +..+++|+||+|++||++++||||||||||++++|.|+++|++|+|++||.|+++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999997 346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCc-cccHHHHHHcCC--CCCC----HHHHHHHHHHHhhh--hhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 462 LVNQEPALF-ATTIRENILYGK--DDAT----MEEITRAAKLSEAM--SFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 462 ~V~Q~~~Lf-~~TIreNI~~g~--~~~~----~~~v~~a~~~a~~~--~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
||-|..-|| +-||.|||.+-. ...+ .+++.+-+++.++. +|..+.| ..|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 999999999 579999998753 1222 33445555555553 2444444 68999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchh-hhhcCEEEEEeCCeEEEecChhHHhcCC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSHEELISNP 609 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~eL~~~~ 609 (876)
|||..+|+|+|+|||+||||+.+++.+|+-+.++.+ ++|+|+|||++.. ++-||||.||++|+|++.|+++|+++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999877643 8999999999996 5669999999999999999999999875
Q ss_pred Cch
Q 002817 610 NSA 612 (876)
Q Consensus 610 ~g~ 612 (876)
...
T Consensus 228 an~ 230 (309)
T COG1125 228 AND 230 (309)
T ss_pred cHH
Confidence 433
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-50 Score=392.92 Aligned_cols=220 Identities=34% Similarity=0.569 Sum_probs=199.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCc-----cEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~-----G~I~idG~di~~--~~ 452 (876)
..++++|+++.|.+ ..+|+|||++|++++.+|++|||||||||+++.+.|+.+..+ |+|.++|+||.+ +|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 36899999999973 469999999999999999999999999999999999999886 999999999976 57
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCC------CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGK------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~------~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
.-.||++||.|+|.|.-|..||+|||.||. +..-++-|+++++.|.++|-+. |. +.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK---Dr----L~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK---DR----LHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH---HH----hhCCccCCChhHH
Confidence 999999999999999999999999999995 2223455889999999988753 33 4567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||+||||||.-+|+|||||||||||||.+-.+|.+.|.++.++-|+|+|||.++-..+ +|+...+-.|+++|.|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999997655 999999999999999999999
Q ss_pred hcCC
Q 002817 606 ISNP 609 (876)
Q Consensus 606 ~~~~ 609 (876)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8763
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.5e-49 Score=418.51 Aligned_cols=235 Identities=49% Similarity=0.807 Sum_probs=218.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 246899999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++|++++|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++....++.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999997655566778888888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHH
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~ 618 (876)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|..+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 9999999999999999999999988778999999999999988999999999999999999999987 788887664
No 54
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-48 Score=416.24 Aligned_cols=240 Identities=31% Similarity=0.503 Sum_probs=221.0
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHh
Q 002817 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (876)
Q Consensus 378 ~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr 457 (876)
..+.|+++|++++|+.. +..+|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.++|.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999742 24689999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+.|+||+|+|++|++|++||+.... ....+++.++.+..++.+++..+|.|++|.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999997653 234567788888888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHH
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~ 617 (876)
+|++|||||||++||++++..+.+.++++.+++|+|++||+++.+..||+|++|++|+|++.|+++++.+..++.|++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999887779999999999999999999999999999999999999887567787776
Q ss_pred HH
Q 002817 618 QL 619 (876)
Q Consensus 618 ~~ 619 (876)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 53
No 55
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-47 Score=406.05 Aligned_cols=234 Identities=52% Similarity=0.809 Sum_probs=216.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+.. ..+|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35899999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++|++++|+.|++||+.++.+..+.+++.++++..++.+.+..+|.|++|.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998766667778888888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHH
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~ 618 (876)
+||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... .+.|+.++.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 9999999999999999999999887678999999999999999999999999999999999998875 566665543
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-47 Score=405.55 Aligned_cols=232 Identities=56% Similarity=0.879 Sum_probs=214.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++. +.++++|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999743 235899999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++|++.+|+.|++||+.++.+..+.+++.++++..++.++++.+|.|+++..+.+..+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998765566778888888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++... .+.|+.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 9999999999999999999999988789999999999999999999999999999999999999876 555543
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-47 Score=403.36 Aligned_cols=227 Identities=47% Similarity=0.787 Sum_probs=213.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
+.|+++|++++|++ ..++++|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 36899999999963 2358999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
++|++|++++|++|++||+.++.+....+++.++++..++.++++.+|+|+++.++.+..+||||||||++||||++++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987666677888888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999999999999999999999999888754
No 58
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=378.52 Aligned_cols=471 Identities=20% Similarity=0.237 Sum_probs=353.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002817 107 FVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHY 186 (876)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~ 186 (876)
+.++..+..+.+.+........++.+..++|.++.++++.-|+.-+++ .+++.++.++++|+..|. +-...++.+.+.
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa 131 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHHHH
Confidence 344444444555666666778899999999999999999999999998 689999999999999998 444678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH--HHHH
Q 002817 187 ISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE--DKAV 264 (876)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e--~~~~ 264 (876)
...++++.+.+.|+++++.+++++.+.+..+...+...+..+.....++..++..+..+-.+.|-|..+...-- ..+.
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 99999999999999999988888888888888888888888888889999999999999999999999887532 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002817 265 KVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITA 344 (876)
Q Consensus 265 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (876)
+.|...-+...+................+.+.+....+.+|..... +--+.....++....+.+..|+.++...++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~ 288 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPT 288 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhH
Confidence 3343333333332222221111111112222222222333333221 1112223334444555667899999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHH
Q 002817 345 FIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKS 424 (876)
Q Consensus 345 ~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKS 424 (876)
+.+|.+|+++|.++-..++..+-..+ ...+. -..||++||.|+|++. ..-+..||++|++||.|-|+|.+|||||
T Consensus 289 l~~AqvA~~kiakle~~~~~a~~~~~--q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 289 LLTAQVAFNKIAKLELAPYKADFPRP--QAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred HHHHHHHHHHHHHhhcCCccccCCCC--CcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHH
Confidence 99999999999998664433221111 11122 2479999999999743 2457889999999999999999999999
Q ss_pred HHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCC-CCHHHHHHHHHHHhhhhhH
Q 002817 425 TVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFI 503 (876)
Q Consensus 425 Tll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~-~~~~~v~~a~~~a~~~~~i 503 (876)
|+++||.|+|.|++|+|++||.++..-+++++|+-++-|+-|-|||..++ |.+. ++.+.+..-++.-.+..-
T Consensus 364 T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~k- 436 (546)
T COG4615 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHK- 436 (546)
T ss_pred HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhh-
Confidence 99999999999999999999999999999999999999999999999754 4443 666665544433322111
Q ss_pred hcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEcCCchh
Q 002817 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLST 581 (876)
Q Consensus 504 ~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrls~ 581 (876)
-++.+|--+ -..||-|||.|+|+--|++-+.|||+|||=-+--||+=++.+.+.+.-. .+|||+|.|||+-.+
T Consensus 437 tsl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 437 TSLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred hcccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 122222211 2579999999999999999999999999999999999999995554332 359999999999999
Q ss_pred hhhcCEEEEEeCCeEEEe
Q 002817 582 IRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 582 i~~aD~Iivl~~G~Ive~ 599 (876)
...|||++.|++|+++|.
T Consensus 512 F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 512 FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhHHHHHHHhcCceeec
Confidence 999999999999999985
No 59
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.1e-47 Score=402.86 Aligned_cols=234 Identities=67% Similarity=1.021 Sum_probs=213.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|+++.|++..+.++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|.++.+++...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998755566677777777788888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHH
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l 616 (876)
+||||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++... ...++.+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHH
Confidence 9999999999999999999999887778999999999999999999999999999999999998765 4444443
No 60
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=411.03 Aligned_cols=216 Identities=36% Similarity=0.562 Sum_probs=194.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++||+.+|++. .+|+|+||+|++||+++++|||||||||++++|.|+.+|++|+|.+||.|+++++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2899999999999999999999999999999999999999999999999999999876 899
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCC------CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKD------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~------~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|+|+|+.-||. .||+|||.||.. +.-+++|.++++..++.+.+++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999995 599999999963 233677889999999888887766 689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
|++++|+++|||||+|+||++.......-|+++.+ +.|+|.|||+...+.. ||||+||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999998888877643 6899999999887655 99999999999999999999998754
Q ss_pred ch
Q 002817 611 SA 612 (876)
Q Consensus 611 g~ 612 (876)
..
T Consensus 227 n~ 228 (338)
T COG3839 227 NL 228 (338)
T ss_pred ch
Confidence 43
No 61
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.5e-47 Score=397.05 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=207.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
+.|+++|++++|+.. +.++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|.++.+++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 368999999999742 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
++|++|++.+|++|++|||.+.. ..+.+++.++++..++.+++..+|.|++|..++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998764 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||+|++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999999999999999999999886
No 62
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.6e-47 Score=395.96 Aligned_cols=214 Identities=36% Similarity=0.562 Sum_probs=193.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.++++|++|+|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+.+|.+|+|.+||.|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC-CCccccHHHHHHcCC-CC---------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 461 GLVNQEP-ALFATTIRENILYGK-DD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 461 ~~V~Q~~-~Lf~~TIreNI~~g~-~~---------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
|||||++ .-|.-||+|=+.+|+ |. .+++.+.+|++..+..++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 557889999999997 31 133457888999888777433 2357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchh-hhhcCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
.|||||.++|+||+||||||+||....-.|.+.++++. +|+|+|+|.|+++. .+.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999876 47999999999985 6779999999999999999999998
Q ss_pred cC
Q 002817 607 SN 608 (876)
Q Consensus 607 ~~ 608 (876)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 63
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.8e-47 Score=416.06 Aligned_cols=225 Identities=30% Similarity=0.524 Sum_probs=190.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---Hh
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---lr 457 (876)
|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999999987654 58
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
++||||+|++.+|. .|++|||.|+.. ..+. +++.++++..++.++.. ....+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999995 799999998642 2222 33445555555444332 345689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998754 7999999999999966 99999999999999999999987
Q ss_pred CCCc-hHHHHH
Q 002817 608 NPNS-AYAALV 617 (876)
Q Consensus 608 ~~~g-~y~~l~ 617 (876)
.+.. .++.++
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 5433 334444
No 64
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=410.04 Aligned_cols=222 Identities=26% Similarity=0.458 Sum_probs=189.1
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC------
Q 002817 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------ 451 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~------ 451 (876)
..|+++|++|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 24699999999999999999999999999999999999999999999999998753
Q ss_pred ----------CHHHHhcceEEEeccC--CCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhh-hhhcC
Q 002817 452 ----------DLKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGE 516 (876)
Q Consensus 452 ----------~~~~lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe 516 (876)
+...+|++|+||+|+| .+|+.||+|||.||.. ..+.++..+. +.++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcC
Confidence 3567899999999998 7999999999999842 2333333221 12233333 343 34677
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhh-hhcCEEEEEeCC
Q 002817 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI-RNADVIAVVQGR 594 (876)
Q Consensus 517 ~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G 594 (876)
++.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 589999999999987 569999999999
Q ss_pred eEEEecChhHHhcC
Q 002817 595 KIVKTGSHEELISN 608 (876)
Q Consensus 595 ~Ive~Gt~~eL~~~ 608 (876)
+|++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999999765
No 65
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.5e-46 Score=391.18 Aligned_cols=220 Identities=44% Similarity=0.733 Sum_probs=203.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
++|+++|++++|+.. +.++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++..++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2468999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
++|++|++++|..|++||+.++.+..+.+++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555667788888888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEec
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 600 (876)
+++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999887678999999999998889999999999998765
No 66
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-46 Score=372.87 Aligned_cols=228 Identities=33% Similarity=0.532 Sum_probs=190.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH---HH
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WL 456 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~---~l 456 (876)
..|++++|+|+|.+ +.||+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999964 4699999999999999999999999999999999999999999999999999999864 56
Q ss_pred hcceEEEeccCCCccc-cHHHHHHcCC---CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcC-CCCCCCHHHHHHHHH
Q 002817 457 RQQIGLVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQRIAI 531 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~-TIreNI~~g~---~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRIai 531 (876)
|+++|+++|+.-||+. ||+||+.|-- .+..++++.+-+ +..+.- - |+...+++ -...||||.|.|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv-~~KL~~--V----GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV-LMKLEL--V----GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH-HHHHHh--c----CCChhhhhhCchhhcchHHHHHHH
Confidence 9999999999999976 9999999953 233344443322 222210 0 22222221 246899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||+.-||+|+++|||||+|||.+...+.+.|+++.+ +-|+|+|||+++++.. ||+|+++.||+|+..||.+|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998887643 8899999999999877 899999999999999999999998
Q ss_pred CCchHHHHH
Q 002817 609 PNSAYAALV 617 (876)
Q Consensus 609 ~~g~y~~l~ 617 (876)
++...++++
T Consensus 237 d~P~v~qf~ 245 (263)
T COG1127 237 DDPWVRQFF 245 (263)
T ss_pred CCHHHHHHh
Confidence 655555544
No 67
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2e-46 Score=356.02 Aligned_cols=209 Identities=36% Similarity=0.574 Sum_probs=187.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|.+++|.|+|...+ =.++++|++||.+||+||||||||||+|+|.||..|.+|+|.|+|+|.....+. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999997432 258899999999999999999999999999999999999999999999877664 46799
Q ss_pred EEeccCCCcc-ccHHHHHHcCC-CC-----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFA-TTIRENILYGK-DD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~-~~-----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
.++||..||. -||++||.+|. |. ...+++..|+...++.+|.++||. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 69999999997 32 356779999999999999999984 799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
++|+-|||+||||+||||+.-++.....+.++. ++.|+++|||+++.++. +|+++++++|||.++|.-+++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888877776654 57899999999998766 999999999999999999999875
No 68
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-46 Score=406.68 Aligned_cols=218 Identities=38% Similarity=0.611 Sum_probs=193.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..|+++||+.+|. +..+++|+||+|++||+++++|||||||||++++|.||.+|++|+|.+||+|+.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 35799999999999999999999999999999999999999999999999999997765 688
Q ss_pred eEEEeccCCCc-cccHHHHHHcCCC---CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 460 IGLVNQEPALF-ATTIRENILYGKD---DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 460 i~~V~Q~~~Lf-~~TIreNI~~g~~---~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
|++|+|+.-|| +.||+|||.||.. ... .+++.+++++.++.++-.+.| ..|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 99999999999 6799999999963 112 247888888888877655544 6899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchh-hhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||||..+|++||||||.||||.+-...++.-++++. .|.|.|+|||+-.. +.-+|||+||++|+|.+.||++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999988887654 38999999999775 566999999999999999999999987
Q ss_pred CCchH
Q 002817 609 PNSAY 613 (876)
Q Consensus 609 ~~g~y 613 (876)
+...|
T Consensus 228 P~~~f 232 (352)
T COG3842 228 PATRF 232 (352)
T ss_pred cchHH
Confidence 64433
No 69
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=378.68 Aligned_cols=198 Identities=36% Similarity=0.554 Sum_probs=174.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.+++++|+.+|+. ..+|+|+||+|++||+++||||||||||||+++|.|+.+|++|+|.++|.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4789999999974 56999999999999999999999999999999999999999999999999875443 369
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCCCC------CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~~~------~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+||+|++.||. -||+||+.+|.+.. ..+.+.++.++.++.+|-++.| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999997 69999999996422 3446778888888888776666 589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhh-hhcCEEEEEeC--CeEE
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQG--RKIV 597 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i-~~aD~Iivl~~--G~Iv 597 (876)
||+.+|+|||||||+||||+.|...+|+-+.++. .++|+++|||+++.. .-+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999888765 469999999999975 55999999999 4453
No 70
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6.9e-46 Score=389.40 Aligned_cols=219 Identities=50% Similarity=0.840 Sum_probs=200.4
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHh
Q 002817 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (876)
Q Consensus 378 ~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr 457 (876)
..+.|+++|++++|+++...++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753234699999999999999999999999999999999999999999999999999888888889
Q ss_pred cceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+.++|++|++.+|+.|++||+.++....+.+++.+.+....+.++++.+|.|+++.+.++..+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998865555566666666667788999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeE
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~I 596 (876)
+|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988778999999999999999999999999975
No 71
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=387.59 Aligned_cols=215 Identities=36% Similarity=0.617 Sum_probs=195.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC-CCCHHHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~-~~~~~~lr~~ 459 (876)
-|+++|++|+|+++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|.|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 5889999999
Q ss_pred eEEEeccC--CCccccHHHHHHcCCCC--CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 460 IGLVNQEP--ALFATTIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 460 i~~V~Q~~--~Lf~~TIreNI~~g~~~--~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
||||+|+| .+|..||.|.+.||..+ .+. +.+.++++..++.++.++- ..+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 89999999999999632 333 4467777787777764444 36899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. ||+++||++|+++.+|+++|+.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999998864 4799999999999887 999999999999999999998865
No 72
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-46 Score=390.73 Aligned_cols=213 Identities=35% Similarity=0.540 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH---HHHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~---~~lr~ 458 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 359999999999999999999999999999999999999999999999999988764 67889
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCCC---CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGKD---DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~~---~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
.|+||+|++.+|.. |++||+.++.. ..+.++ +.++++..++.+ .......+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHH
Confidence 99999999999986 99999998631 123333 333333333222 223344689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
||||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 7999999999998875 99999999999999999999876
Q ss_pred C
Q 002817 608 N 608 (876)
Q Consensus 608 ~ 608 (876)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
No 73
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-45 Score=373.98 Aligned_cols=207 Identities=35% Similarity=0.511 Sum_probs=171.9
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---H-
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L- 456 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---l- 456 (876)
++++||+..|.... ...+|+++||+|++||++||+||||||||||+++|.++-.|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246899999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcceEEEeccCCCcc-ccHHHHHHcC----CCCC--CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 457 RQQIGLVNQEPALFA-TTIRENILYG----KDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~-~TIreNI~~g----~~~~--~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
|++||||+|+..|.. -|++|||.+. .... ..+.+.+.++..++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 567999999999885 5999999953 2111 1223333333333332221 133568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCCeEEE
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 598 (876)
||||||+.+|+|++.||||++||+++.+.|.+.+.++. .|+|+|+|||+......|||++.|++|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999998874 3789999999999999999999999999543
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.5e-46 Score=388.98 Aligned_cols=212 Identities=36% Similarity=0.590 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCeeCCCCC--HH
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY-----EPLSGEILLDGNNIKGLD--LK 454 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~-----~p~~G~I~idG~di~~~~--~~ 454 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|++ +|++|+|.++|.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999974 35899999999999999999999999999999999999 999999999999998877 66
Q ss_pred HHhcceEEEeccCCCccccHHHHHHcCCCC--C-----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 455 WLRQQIGLVNQEPALFATTIRENILYGKDD--A-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~--~-----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
.+|++++|++|++.+|+.|++||+.++... . .++++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999886421 1 12344455554444333222111 5789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++|+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988656899999999998765 999999999999999998764
No 75
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=396.86 Aligned_cols=217 Identities=29% Similarity=0.517 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++||+++|+.....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742224599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeccCC--CccccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 461 GLVNQEPA--LFATTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 461 ~~V~Q~~~--Lf~~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+||+|+|. ++..||+|||.|+.. ..+. +++.++++..++.++.. ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 667899999998742 1232 33455555555544433 33468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++++|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 7999999999999988999999999999999999998765
No 76
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=389.16 Aligned_cols=218 Identities=28% Similarity=0.473 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCeeCCCCCHHHHh
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~---p~~G~I~idG~di~~~~~~~lr 457 (876)
.|+++|+++.|++ .++|+|+||++++||.++|+||||||||||+++|.|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999973 358999999999999999999999999999999999985 7999999999999998888899
Q ss_pred cceEEEeccCCCccccHHHHHHcCCC--C------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 458 QQIGLVNQEPALFATTIRENILYGKD--D------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~TIreNI~~g~~--~------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
+.|+|++|++.+|+.|++||+.++.. . ..++++.++++..++.++ ..+...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE-------VKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChh-------hhHHhcCCcccCCHHHHHHH
Confidence 99999999999999999999988631 0 111233344444443322 22345667889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++|+.+.
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877999999999999876 5999999999999999999999764
No 77
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=406.97 Aligned_cols=218 Identities=31% Similarity=0.517 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|+. +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24689999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|||+|++.+|. .||+|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999999852 122 234566666666666555444 589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++.|+++|+..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 789999999999775 599999999999999999999987644
Q ss_pred chH
Q 002817 611 SAY 613 (876)
Q Consensus 611 g~y 613 (876)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 333
No 78
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.2e-45 Score=406.08 Aligned_cols=206 Identities=35% Similarity=0.535 Sum_probs=180.7
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH----hcceEEEeccCCCcc-
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFA- 471 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l----r~~i~~V~Q~~~Lf~- 471 (876)
..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+++..++ |++|+||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999999888 889999999999997
Q ss_pred ccHHHHHHcCCCC--C----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 002817 472 TTIRENILYGKDD--A----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545 (876)
Q Consensus 472 ~TIreNI~~g~~~--~----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLD 545 (876)
.||+|||.|+.+. . .++++.++++..++.++ ......+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999987421 1 23455666666655444 34455689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhh-hhcCEEEEEeCCeEEEecChhHHhcCCCchH
Q 002817 546 EATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (876)
Q Consensus 546 E~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y 613 (876)
|||||||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998764 389999999999976 5599999999999999999999987644444
No 79
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=405.66 Aligned_cols=215 Identities=32% Similarity=0.525 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.++ .+++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5899999999963 458999999999999999999999999999999999999999999999999987765 46889
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+||+|++.+|. .|++|||.|+.. ..+ .+++.+++++.++.++..+ ....||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999995 599999999742 122 3455666666665544333 34689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. -||+|+||++|+|++.|+++|+.+.+.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 799999999999875 499999999999999999999987654
Q ss_pred c
Q 002817 611 S 611 (876)
Q Consensus 611 g 611 (876)
.
T Consensus 230 ~ 230 (351)
T PRK11432 230 S 230 (351)
T ss_pred c
Confidence 3
No 80
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-45 Score=388.37 Aligned_cols=224 Identities=30% Similarity=0.498 Sum_probs=189.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~--~~ 452 (876)
.-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 3589999999999999999999999999999999999997 49999999999863 34
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCCC---CC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~---~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
...+|++|+||+|++.+|+.|++|||.++... .+ ++++.++++..++.+. +++.+++ +..+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~----~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE---VKDKLNT----NALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh---hHHHHhC----CcccCCHHH
Confidence 56789999999999999999999999987421 11 2334445444443221 2334444 567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
|||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999755 99999999999999999999
Q ss_pred HhcCCCchH
Q 002817 605 LISNPNSAY 613 (876)
Q Consensus 605 L~~~~~g~y 613 (876)
+.+++...|
T Consensus 236 ~~~~~~~~~ 244 (254)
T PRK14273 236 LFFNPKNTK 244 (254)
T ss_pred HHhCCCChH
Confidence 986544333
No 81
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=365.14 Aligned_cols=213 Identities=35% Similarity=0.541 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC---HHHHh
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~---~~~lr 457 (876)
.|+++||+..||+ .+.+|+||||+|++||.||||||||||||||++.|.|+.+|++|+|.++|.++..++ ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 457999999999999999999999999999999999999999999999999999888 66789
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCCC-----------CCH---HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKDD-----------ATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~~-----------~~~---~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
++||+++|++.|-+ -|+.+|++.|+-. .+. ....+|++..++.|. .-.|-.+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHhccCC
Confidence 99999999999875 5999999998622 123 334455555554333 335678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEe
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~ 599 (876)
|||+||++|||||+++|+|+|=|||+|+||+.+.+.|++.|++.. .|.|+|+.-|++.+.++ ||||+=|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 58999999999998765 999999999999999
Q ss_pred cChhHHh
Q 002817 600 GSHEELI 606 (876)
Q Consensus 600 Gt~~eL~ 606 (876)
|+.+||-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999963
No 82
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-45 Score=365.93 Aligned_cols=226 Identities=32% Similarity=0.494 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC-HHHHhc
Q 002817 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~-~~~lr~ 458 (876)
.++++|+++.|+... -.++|+||||+|++||+++|||+||||||||.++|.|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997532 114899999999999999999999999999999999999999999999997765543 457889
Q ss_pred ceEEEeccCCC-cc--ccHHHHHHcCC----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPAL-FA--TTIRENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~L-f~--~TIreNI~~g~----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
.|-+|+|||.- +| -||++-|.=+- -+...+++.++++..++ |..+- -.+...|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL-------~~~~l---~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGL-------PPSFL---DRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCC-------CHHHH---hcCchhcChhHHHHHHH
Confidence 99999999973 44 37766553221 12234446666666655 33322 23456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR--TTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~--T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||||.-+|++|||||||||||+...+.|.+.+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|.++-+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999998877655 99999999999988 999999999999999999999876
Q ss_pred CCchHHHH
Q 002817 609 PNSAYAAL 616 (876)
Q Consensus 609 ~~g~y~~l 616 (876)
+...|.+.
T Consensus 233 ~~h~ytr~ 240 (252)
T COG1124 233 PSHPYTRE 240 (252)
T ss_pred CccHHHHH
Confidence 44455443
No 83
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.8e-45 Score=385.04 Aligned_cols=217 Identities=29% Similarity=0.523 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH-hcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l-r~~i 460 (876)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 358999999999999999999999999999999999999999999999999998887654 6789
Q ss_pred EEEeccCCCccc-cHHHHHHcCCCCCC------------HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGKDDAT------------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~~~~------------~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
+||+|++.+|.+ |++|||.++..... .++.. ..+++.++.+ |++........+|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 99999998742111 11111 1223334443 4555556677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998865 68999999999999866 999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 653
No 84
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-44 Score=373.58 Aligned_cols=203 Identities=33% Similarity=0.544 Sum_probs=183.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
+.|+++|++++|+.. +.++++|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 579999999999742 2368999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|+||+|+|.+|++|++||+.+.. ..+++++.++++ ++++..+||||||||++||||++++|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999998764 234455544432 34678899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecCh
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 602 (876)
+++||||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999988999999999999998863
No 85
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-45 Score=402.03 Aligned_cols=217 Identities=36% Similarity=0.603 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---Hh
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---lr 457 (876)
|+++|++|+|+... +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCC--CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
++|+||+|++.+|. .|++||+.++.. ..+.++ +.++++..+ ++........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVG-----------LSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHH
Confidence 89999999999986 699999998631 222222 233333332 222333455689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988753 7899999999999876 99999999999999999999987
Q ss_pred CC
Q 002817 608 NP 609 (876)
Q Consensus 608 ~~ 609 (876)
.+
T Consensus 231 ~~ 232 (343)
T PRK11153 231 HP 232 (343)
T ss_pred CC
Confidence 53
No 86
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8.2e-45 Score=402.43 Aligned_cols=217 Identities=29% Similarity=0.477 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999973 3589999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCCC--CC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKDD--AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~~--~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+||+|++.+|. .|++|||.|+... .+ .+++.++++..++.++ ......+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999999995 7999999998521 12 2344455555444333 33455789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. -||+|++|++|+|++.|+++|+.+++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 789999999999875 499999999999999999999998654
Q ss_pred chH
Q 002817 611 SAY 613 (876)
Q Consensus 611 g~y 613 (876)
..|
T Consensus 228 ~~~ 230 (353)
T TIGR03265 228 TPF 230 (353)
T ss_pred CHH
Confidence 333
No 87
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.5e-44 Score=384.40 Aligned_cols=217 Identities=32% Similarity=0.554 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCeeCCCC--CHH
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKGL--DLK 454 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~-----~G~I~idG~di~~~--~~~ 454 (876)
|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|.|+++|+ +|+|.+||.++.+. +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35899999999999999999999999999999999999998 99999999999763 456
Q ss_pred HHhcceEEEeccCCCccccHHHHHHcCCC--C-CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 455 WLRQQIGLVNQEPALFATTIRENILYGKD--D-ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~-~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
.+|++|+||+|++.+|+.|++||+.++.. . .+. +++.++++..++.+++ +........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHH
Confidence 78899999999999999999999997631 1 122 2334444444443222 12345566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++|+.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999998865 9999999999999999999987
Q ss_pred cC
Q 002817 607 SN 608 (876)
Q Consensus 607 ~~ 608 (876)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 64
No 88
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=386.43 Aligned_cols=218 Identities=32% Similarity=0.561 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~~ 453 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 359999999999999999999999999999999999975 689999999999875 455
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CC-----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|++|+||+|++.+|+.|++||+.++.. .. ..+++.++++..++.++ ..+.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDE-------VKDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCHHHH
Confidence 678999999999999999999999998631 11 12344455555444322 22345667789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999855 999999999999999999999
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 865
No 89
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=389.21 Aligned_cols=213 Identities=30% Similarity=0.553 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++|+|+. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+..++|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23599999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEeccC--CCccccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 461 GLVNQEP--ALFATTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 461 ~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+||+|+| .+|+.|++||+.|+.. ..+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6889999999998742 1222 34455555555544443333 48999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHh
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998874 4899999999999985 59999999999999999987643
No 90
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-44 Score=380.88 Aligned_cols=223 Identities=34% Similarity=0.554 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..++...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeccCCCccccHHHHHHcCCCC--CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 461 GLVNQEPALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 461 ~~V~Q~~~Lf~~TIreNI~~g~~~--~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+|++|++.+|+.|++||+.++... ...+++.+.++..+ ++++ .......+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-------l~~~---~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG-------LNKE---YATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcC-------CCHH---HhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999986421 11223333333322 2211 22346678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++...+...|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999998875 37999999999999875 9999999999999999999998653333444
Q ss_pred H
Q 002817 616 L 616 (876)
Q Consensus 616 l 616 (876)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
No 91
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=389.29 Aligned_cols=218 Identities=32% Similarity=0.545 Sum_probs=185.4
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC--HHHHh
Q 002817 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~--~~~lr 457 (876)
|+++||+|+|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEeccC--CCccccHHHHHHcCCC--CCCHHHH----HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 458 QQIGLVNQEP--ALFATTIRENILYGKD--DATMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 458 ~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v----~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
++||||+|+| .+|+.|++|||.|+.. ..+.++. .++++..++ + +.+.......+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~--~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL-------D--YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCC-------C--chhhccCCcccCCHHHHHHH
Confidence 9999999998 6789999999998742 2333333 333333332 1 11334556789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 799999999999885 59999999999999999999987
Q ss_pred cC
Q 002817 607 SN 608 (876)
Q Consensus 607 ~~ 608 (876)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
No 92
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=5.9e-41 Score=380.59 Aligned_cols=469 Identities=17% Similarity=0.142 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHH------HHHHHHHHHHHHHHh
Q 002817 104 SLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVI------SAITSDIIVVQDALS 177 (876)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~------s~~~~D~~~i~~~~~ 177 (876)
...+.+++.+..+....+.++......+.-.-+-..+.++-+.+.-.|+.. ..|.+- .|++.|+..+-+...
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHH
Confidence 334444444444444455554444444444445555666666666333332 344232 699999988877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 178 EKVGNFMHYISRFLGGFIIGFARVW---------------QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGE 242 (876)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (876)
+....++..+.+++.-.+++..++- .+..++++.+++..++..++++.+.+...+..+..+..-.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 6556666665555444444332111 1223333444444555567777777777777777777777
Q ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Q 002817 243 IAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESF 322 (876)
Q Consensus 243 ~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~ 322 (876)
.+.-.-++...|-.|+.|+.+.++.++......+...+......-...+......++.++.+..+.-....|.++.|.+.
T Consensus 247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lm 326 (604)
T COG4178 247 SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLM 326 (604)
T ss_pred HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHH
Confidence 77788889999999999999988888777766665555443333333333333334434444455555678999999998
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccc---cccCccc-CCCC---CCCcccEEEEeEEEECCCCC
Q 002817 323 TTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTM---SKASSKT-GRKL---DKLSGHIEFKDVSFCYPSRP 395 (876)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~---~~~~~~~-~~~~---~~~~~~I~~~~vsf~y~~~~ 395 (876)
.....+......++.+...+..+++-++...|+.++.+.-+. .+..... +... ...+..|+|+|++..-|+.
T Consensus 327 qa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~- 405 (604)
T COG4178 327 QAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-
Confidence 888888888888889999999999999999999998743221 1100000 0000 1114689999999998854
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHH
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIr 475 (876)
...+++.||++++|+.+-|.||||||||||+++|.|+++--+|+|..-.. +.+-|+||.|++=.||+|
T Consensus 406 -~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 406 -QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLR 473 (604)
T ss_pred -CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHH
Confidence 37899999999999999999999999999999999999999999987621 148999999999999999
Q ss_pred HHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 002817 476 ENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (876)
Q Consensus 476 eNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~ 553 (876)
|-|+|-++ +.+++++.+++..+++.+++++|.+-.+ =..-||||||||+|+||.++++|++++|||+|||||.
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 99999884 3899999999999999999988754322 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEe
Q 002817 554 ESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (876)
Q Consensus 554 ~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 592 (876)
++|..+.+.+++.+++.|+|-|.||.......++.+-++
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999998888777765554
No 93
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=388.52 Aligned_cols=216 Identities=30% Similarity=0.514 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEeccC--CCccccHHHHHHcCCCC--CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 461 GLVNQEP--ALFATTIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 461 ~~V~Q~~--~Lf~~TIreNI~~g~~~--~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+|++|+| .+++.|++|||.++... .+. +++.++++..++.+++... ..+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 56788999999986421 222 3355555555555544443 358999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999999999999999999999999998764
No 94
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-44 Score=382.24 Aligned_cols=220 Identities=32% Similarity=0.550 Sum_probs=189.5
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--C
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~ 451 (876)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.+ .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 357999999999973 358999999999999999999999999999999999986 589999999999863 4
Q ss_pred CHHHHhcceEEEeccCCCccccHHHHHHcCCC---CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH
Q 002817 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD---DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (876)
Q Consensus 452 ~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~---~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG 524 (876)
+...+|++|+|++|++.+|..|++||+.++.. ..+. +++.++++..++ +.++.+...+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAAL-------WNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC-------ChhhHHHHhcCCCCCCHH
Confidence 56788999999999999999999999998642 1222 234444444443 223334566778899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChh
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~ 603 (876)
||||++||||++++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999998865 9999999999999999999
Q ss_pred HHhcC
Q 002817 604 ELISN 608 (876)
Q Consensus 604 eL~~~ 608 (876)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98765
No 95
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=389.36 Aligned_cols=218 Identities=33% Similarity=0.528 Sum_probs=181.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH----hc
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQ 458 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l----r~ 458 (876)
.++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++..++ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 35567777753 358999999999999999999999999999999999999999999999999988876554 46
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCC--CC----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKD--DA----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
+++|++|++.+|. .|++||+.++.. .. ..+++.++++..++.+++.+ ...+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHH
Confidence 8999999999984 699999987531 11 12334455555554443333 335899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++|+.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 37999999999998755 999999999999999999999875
Q ss_pred CCchHH
Q 002817 609 PNSAYA 614 (876)
Q Consensus 609 ~~g~y~ 614 (876)
+...|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 444443
No 96
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=389.99 Aligned_cols=217 Identities=24% Similarity=0.484 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC----CCHHH
Q 002817 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (876)
Q Consensus 382 I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~----~~~~~ 455 (876)
|+++||+|+|+... ..++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcceEEEeccC--CCccccHHHHHHcCCCC--CCHHHHH----HHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEIT----RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 456 lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~~--~~~~~v~----~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
+|+.|+||+|+| .+|+.|+.|||.|+... .+.+++. ++++..++ ++ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~---~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL-------AD---EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hhccCCcccCCHHHHH
Confidence 899999999998 79999999999998522 2333332 22222222 11 1234556799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
|++|||||+.+|+|+||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998764 4899999999999885 5999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 754
No 97
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.8e-44 Score=400.01 Aligned_cols=217 Identities=34% Similarity=0.545 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 3589999999999999999999999999999999999999999999999999877664 5789
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+||+|++.+|. .||+|||.|+.. ..+ .+++.++++..++.++..+.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 599999999852 112 234566666666666655544 589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||..+...+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++.|+++++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988754 799999999999865 599999999999999999999988754
Q ss_pred chH
Q 002817 611 SAY 613 (876)
Q Consensus 611 g~y 613 (876)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 333
No 98
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-44 Score=370.61 Aligned_cols=210 Identities=30% Similarity=0.566 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++|+|.++ ++|+||||+|++|++++||||+|||||||+++|+|+.+|++|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999743 49999999999999999999999999999999999999999999999988766544 5689
Q ss_pred EEEeccC---CCccccHHHHHHcCCCC----------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 461 GLVNQEP---ALFATTIRENILYGKDD----------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 461 ~~V~Q~~---~Lf~~TIreNI~~g~~~----------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
|||||.. |=|.-||+|=+.+|+.. .+.+++.+|++..+..++..+ +|| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHH
Confidence 9999954 67999999999998521 234889999999999877433 444 69999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
|+-|||||.++|++|+|||||+++|+.++..+.+.|+++.+ |+|+++|||+|+.+.. +|+|+.|+ ++++..|+.+|.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999988764 8999999999998765 99999986 678899999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 864
No 99
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-44 Score=381.94 Aligned_cols=212 Identities=36% Similarity=0.554 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC---HHHHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~---~~~lr~ 458 (876)
|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 146999999999999999999999999999999999999999999999999998877 567889
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCCC-----------CC---HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKDD-----------AT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~~-----------~~---~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
.++||+|++.+|. .|++||+.++... .+ .+++.++++.. |+......++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCH
Confidence 9999999998886 6999999876421 01 11222222222 333344566789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEec
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 600 (876)
|||||++||||++++|+|||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998875 3799999999999988 59999999999999999
Q ss_pred ChhHHh
Q 002817 601 SHEELI 606 (876)
Q Consensus 601 t~~eL~ 606 (876)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999873
No 100
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=388.85 Aligned_cols=221 Identities=31% Similarity=0.533 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC----CHH
Q 002817 381 HIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~----~~~ 454 (876)
.|+++|++|+|++.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997422 24699999999999999999999999999999999999999999999999999754 346
Q ss_pred HHhcceEEEeccC--CCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHHHHHHH
Q 002817 455 WLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRI 529 (876)
Q Consensus 455 ~lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGGQkQRI 529 (876)
.+|++||||+|+| .+|+.|++|||.|+.. ..+.++..+.+ .+.++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999998 6898999999999742 23333333221 2223333 5554 34567789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+|||||+.+|+|+||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 4899999999999875 59999999999999999999987
Q ss_pred cC
Q 002817 607 SN 608 (876)
Q Consensus 607 ~~ 608 (876)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 65
No 101
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=385.07 Aligned_cols=220 Identities=32% Similarity=0.515 Sum_probs=188.5
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCC--C
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--L 451 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~--~ 451 (876)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.+||.++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999973 3599999999999999999999999999999999999985 89999999999975 4
Q ss_pred CHHHHhcceEEEeccCCCccccHHHHHHcCCC--CC--C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD--DA--T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 452 ~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~--~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
+...+|+.|+||+|+|.+|+.|++||+.++.. .. + .+++.++++..++.++ +.+.....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE-------VKDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCH
Confidence 56678999999999999999999999998631 10 1 2334444544444322 22344567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778999999999999855 899999999999999999
Q ss_pred hHHhcC
Q 002817 603 EELISN 608 (876)
Q Consensus 603 ~eL~~~ 608 (876)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998754
No 102
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-44 Score=380.76 Aligned_cols=211 Identities=35% Similarity=0.535 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 459999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEeccCCCcc-ccHHHHHHcCCCC--C----CHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 462 LVNQEPALFA-TTIRENILYGKDD--A----TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~~--~----~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
||+|+|.+|. .|++||+.++... . +.+ ++.++++..+ ++........+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-----------LDWLADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHH
Confidence 9999999985 6999999987421 1 111 2223333333 333344456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 7899999999998765 99999999999999999999876
Q ss_pred C
Q 002817 608 N 608 (876)
Q Consensus 608 ~ 608 (876)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 103
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.2e-44 Score=377.40 Aligned_cols=203 Identities=31% Similarity=0.510 Sum_probs=173.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH---HHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~---~lr~ 458 (876)
|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23599999999999999999999999999999999999999999999999999877643 4788
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCC------CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKD------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~------~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
+++||+|++.+|. .|++||+.++.. +..++++.++++..++.++... ...+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 9999999999886 599999987631 1123445555555554443332 335899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeE
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 596 (876)
|||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998864 47899999999999875 999999999985
No 104
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.1e-44 Score=375.88 Aligned_cols=217 Identities=30% Similarity=0.475 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH-hcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l-r~~i 460 (876)
|+++||+++|+. .++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 358999999999999999999999999999999999999999999999999988887654 6789
Q ss_pred EEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 461 GLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
+||+|++.+|.. |++||+.++......++..+ +.....+.+..++ ........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA--RLERVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH--HHHHHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999998753221111111 1112222222233 3344556789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 57899999999998765 99999999999999999988753
No 105
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3e-44 Score=397.90 Aligned_cols=217 Identities=31% Similarity=0.518 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+.+. .|++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999974 358999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCCC------CC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKDD------AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~~------~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
+||+|++.+|. .|++|||.|+... .+ .+++.++++..++.++. ......||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 99999999996 5999999997421 12 23344444444443332 234568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988754 7899999999998765 9999999999999999999998
Q ss_pred cCCCchH
Q 002817 607 SNPNSAY 613 (876)
Q Consensus 607 ~~~~g~y 613 (876)
.++...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 7644333
No 106
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-43 Score=381.19 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=193.9
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHh
Q 002817 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (876)
Q Consensus 378 ~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr 457 (876)
..+.|+++|+++.+ .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.++|.
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~----------- 99 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------- 99 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-----------
Confidence 34579999999962 35899999999999999999999999999999999999999999999993
Q ss_pred cceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|+|++|++++|+.|++||+.++.. ....++.++++..++.+.+..+|++++|.+++++.+||||||||++||||+++
T Consensus 100 --i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 100 --ISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred --EEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998753 23345566667677788899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 538 NPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~-l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
+|+||||||||++||+.+...+.+. ++.+.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|.+
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~ 254 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSS 254 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHH
Confidence 9999999999999999999988764 4566668999999999999999999999999999999999999865 344443
No 107
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-44 Score=386.15 Aligned_cols=217 Identities=29% Similarity=0.527 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++||+++|+.....++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334689999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeccC--CCccccHHHHHHcCCC--CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 461 GLVNQEP--ALFATTIRENILYGKD--DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 461 ~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+||+|+| .+++.|+.|||.++.. ..+.++ +.++++..++.++. ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 9999998 4778999999998632 233333 34444444443332 234568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++|+++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988754 7999999999999989999999999999999999999865
No 108
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-44 Score=347.06 Aligned_cols=208 Identities=32% Similarity=0.525 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH---HHHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~---~~lr~ 458 (876)
|+|+||+..|+.. +++|+|+||+|++||++-++|||||||||+++||++...|++|+|.++|+|+..+.- .-||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999864 569999999999999999999999999999999999999999999999999987774 46899
Q ss_pred ceEEEeccCCCc-cccHHHHHHcCC------CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPALF-ATTIRENILYGK------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~Lf-~~TIreNI~~g~------~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
+||+|+||--|. +-|+.||++|.- +..-.++|.++++..++.+=...|| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999876 569999999864 2233466888889998888777777 5899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhhc-CEEEEEeCCeEEEecCh
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNA-DVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~a-D~Iivl~~G~Ive~Gt~ 602 (876)
|||++.+|++||-||||-+||+.+...|.+.+.++ ..|.|+++.||+.+.+... -+++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998876 4689999999999999885 48999999999876443
No 109
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.5e-44 Score=380.79 Aligned_cols=214 Identities=35% Similarity=0.561 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH---HHHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~---~~lr~ 458 (876)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2459999999999999999999999999999999999999999999999999987764 45788
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCCCC-----------CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~~~-----------~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
+++||+|++.+|. .|++||+.++.... +.++- ..+.+.++.+ |++........+||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK------ERALSALERV--GLADKAYQRADQLSGGQQ 151 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHH------HHHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 9999999999886 69999998864211 11111 1111222222 333444566789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChh
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHE 603 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 603 (876)
||++||||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999998874 3789999999999985 49999999999999999999
Q ss_pred HH
Q 002817 604 EL 605 (876)
Q Consensus 604 eL 605 (876)
++
T Consensus 232 ~~ 233 (243)
T TIGR02315 232 EL 233 (243)
T ss_pred Hh
Confidence 87
No 110
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-44 Score=382.45 Aligned_cols=218 Identities=31% Similarity=0.464 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCC--CCCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK--GLDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~--~~~~ 453 (876)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3589999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcceEEEeccCCCccc-cHHHHHHcCCC--C--CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH
Q 002817 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKD--D--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~~--~--~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG 524 (876)
..+|++++|++|++.+|.. |++||+.++.. . ... +++.++++..++.+++ .........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHH
Confidence 6789999999999999975 99999987631 1 112 2334444444332221 22345567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChh
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~ 603 (876)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999765 9999999999999999999
Q ss_pred HHhcC
Q 002817 604 ELISN 608 (876)
Q Consensus 604 eL~~~ 608 (876)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98764
No 111
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=371.63 Aligned_cols=215 Identities=33% Similarity=0.529 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCe---eCCCCCHHHHh
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN---NIKGLDLKWLR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~---di~~~~~~~lr 457 (876)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++ ...-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~--~~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN--LAVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc--cchhh
Confidence 4788899999974 45899999999999999999999999999999999999999999999999 6655 34455
Q ss_pred cceEEEeccCCCc-cccHHHHHHcCC------C--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 458 QQIGLVNQEPALF-ATTIRENILYGK------D--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf-~~TIreNI~~g~------~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
++||+|+|+.-|| +.||+|||.||. | .....++.+-++++++..+-+.- ..+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChHHHHH
Confidence 7899999999988 789999999996 2 12334455555666654443333 46899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhh-hhcCEEEEEeCCeEEEecChhHH
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
+||||||...|++||||||.+|||++..+.+++-|+++.. +.|+++|||+...+ +-||||+||++|+|.+.|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999988887643 78999999999865 55999999999999999999999
Q ss_pred hcCCCc
Q 002817 606 ISNPNS 611 (876)
Q Consensus 606 ~~~~~g 611 (876)
...++.
T Consensus 226 ~~~P~s 231 (345)
T COG1118 226 YDHPAS 231 (345)
T ss_pred hcCCCc
Confidence 877543
No 112
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.6e-44 Score=397.73 Aligned_cols=218 Identities=30% Similarity=0.492 Sum_probs=187.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCc--cEEEECCeeCCCCCHHHHh
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS--GEILLDGNNIKGLDLKWLR 457 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~--G~I~idG~di~~~~~~~lr 457 (876)
+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.++|.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999973 358999999999999999999999999999999999999999 999999999987665 46
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
+.|+||+|++.+|. .|++|||.|+.. ..+. +++.++++..++.++..+. ..+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHHH
Confidence 78999999999995 499999998742 1222 3455555555555444433 4589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV---GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
|||||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+.+|+.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987754 6899999999998755 9999999999999999999998
Q ss_pred cCCCchH
Q 002817 607 SNPNSAY 613 (876)
Q Consensus 607 ~~~~g~y 613 (876)
+.+...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 7644333
No 113
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.2e-44 Score=375.24 Aligned_cols=211 Identities=28% Similarity=0.478 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++||++.|+.. +.++|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999742 146999999999999999999999999999999999999999999999999987643 67788999
Q ss_pred EEeccCCCc-cccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALF-ATTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf-~~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
||+|++.+| +.|++||+.++.. ..+.+ ++.++++..+ |++..++. ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG-------LTDKANKR----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CHHHHhCh----hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999987531 11222 2223332222 33333433 45899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988778999999999999865 999999999999999999875
No 114
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.5e-44 Score=369.50 Aligned_cols=200 Identities=37% Similarity=0.569 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 382 IEFKDVSFCYPSRPD--VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~--~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
|+++||+++|++..+ +++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999974311 3699999999999999999999999999999999999999999999999 5
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|+||+|+|.+|+.|++||+.++.. .+.+++.++++..++.+++..+|.|++|.+++++.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999753 3456677888888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 540 SILLLDEATSALDAESENSVQE-ALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~-~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
+++||||||++||+++.+.+.+ .++... +++|+|++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888866 566553 4689999999999999999999999985
No 115
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-44 Score=388.86 Aligned_cols=217 Identities=30% Similarity=0.526 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC----CCHHH
Q 002817 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (876)
Q Consensus 382 I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~----~~~~~ 455 (876)
|+++|++|+|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1469999999999999999999999999999999999999999999999999864 34667
Q ss_pred HhcceEEEeccC--CCccccHHHHHHcCCC--CCCHHHH----HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 456 LRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 456 lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v----~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
.|+.|+||+|+| .+|+.|++|||.|+.. ..+.++. .++++..++ +.. ....+..+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~~---~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGL-------PEE---LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------Chh---hhhCCcccCCHHHHH
Confidence 889999999998 6889999999998742 2233333 333333332 211 123456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 604 (876)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 799999999999985 599999999999999999999
Q ss_pred HhcC
Q 002817 605 LISN 608 (876)
Q Consensus 605 L~~~ 608 (876)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8764
No 116
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-44 Score=377.37 Aligned_cols=216 Identities=36% Similarity=0.566 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH---HHh
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~---~lr 457 (876)
|+++|++++|+++. ..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12699999999999999999999999999999999999999999999999999887654 358
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
+.|+|++|++.+|. .|++||+.++.. ..+. +++.++++..+ ++........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG-----------LEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------ChhhhhcChhhCCHHHHHHHH
Confidence 89999999999997 699999987631 1121 22333333333 333344455789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 7899999999999865 99999999999999999998865
Q ss_pred C
Q 002817 608 N 608 (876)
Q Consensus 608 ~ 608 (876)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
No 117
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-44 Score=381.93 Aligned_cols=218 Identities=30% Similarity=0.492 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~--p---~~G~I~idG~di~~--~~~ 453 (876)
-|+++|++|.|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999973 358999999999999999999999999999999999997 3 69999999999864 455
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCC---CCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~---~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.|+|++|++.+|+.|++||+.++... ...++ +.++++..++.++ +.+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE-------VKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHH
Confidence 6788999999999999999999999886421 12222 3333333333222 22344567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 765
No 118
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-44 Score=378.82 Aligned_cols=218 Identities=35% Similarity=0.572 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 45899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeccCCCcc-ccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhh--hhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFET--QVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T--~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
|++|+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |+.. .....+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-----RADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999996 699999987631 111111111 111222222 2221 345567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999988753 799999999999765 4999999999999999999998754
No 119
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.5e-44 Score=398.59 Aligned_cols=221 Identities=25% Similarity=0.471 Sum_probs=193.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCC-ccccHHHHHHcCCCC----------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 461 GLVNQEPAL-FATTIRENILYGKDD----------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 461 ~~V~Q~~~L-f~~TIreNI~~g~~~----------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
|||+|++.+ |+.|++||+.+|+.. ...+.+.++++..++.++..+ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 688999999987521 123456667777666554322 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhc
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+|||||+++|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 5789999999999985 599999999999999999999986
Q ss_pred CCCchHHHHH
Q 002817 608 NPNSAYAALV 617 (876)
Q Consensus 608 ~~~g~y~~l~ 617 (876)
. ....+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 4 3344444
No 120
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-44 Score=379.35 Aligned_cols=218 Identities=32% Similarity=0.494 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCCCHHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~~~~~ 455 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3589999999999999999999999999999999999984 7999999999999888888
Q ss_pred HhcceEEEeccCCCc-cccHHHHHHcCCC--C--CC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 456 LRQQIGLVNQEPALF-ATTIRENILYGKD--D--AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 456 lr~~i~~V~Q~~~Lf-~~TIreNI~~g~~--~--~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
+|+.|+||+|++.+| +.|++||+.++.. . .. .+++.++++..++.+.+ +........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 999999999999755 6799999987641 1 11 23344555554443221 1223445578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999999
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 765
No 121
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-44 Score=373.81 Aligned_cols=203 Identities=39% Similarity=0.604 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999964 358999999999999999999999999999999999999999999999999987553 578899
Q ss_pred EEeccCCCcc-ccHHHHHHcCCCC--CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFA-TTIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~~--~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
||+|++.+|. .|++||+.++... .+. +++.++++..++ +........+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL-----------EGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999998885 6999999886421 122 223333333333 333344456899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
++++|+++||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998874 38999999999998765 9999999999999876
No 122
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-44 Score=380.08 Aligned_cols=218 Identities=32% Similarity=0.522 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~~ 453 (876)
.|+++|++|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 359999999999999999999999999999999999997 489999999999864 445
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCC--CC-----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--AT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~--~~-----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.++||+|++.+|+.|++||+.++... .. .+++.++++..++++ ...........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 6788999999999999999999999876421 11 123334444433321 111223456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999765 999999999999999999999
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 765
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.6e-44 Score=375.50 Aligned_cols=216 Identities=26% Similarity=0.509 Sum_probs=184.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998876644 45899
Q ss_pred EEeccCCC-ccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPAL-FATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~L-f~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|++|++.+ ++.|++||+.++.. ..+.++..+ .+.++++.+ |++.....+..+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988 56899999987642 122222211 122333333 455556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 47999999999999988999999999999999999998764
No 124
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-44 Score=379.07 Aligned_cols=219 Identities=33% Similarity=0.564 Sum_probs=186.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~--~~ 452 (876)
+.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36899999999974 3589999999999999999999999999999999999863 69999999999875 45
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCC--CC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
...+|+.++||+|++.+|+.|++||+.++.. .. + .+++.++++..++.+ +..........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 6678999999999999999999999998641 11 1 223344444443322 22334556778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
|||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998765 99999999999999999999
Q ss_pred HhcC
Q 002817 605 LISN 608 (876)
Q Consensus 605 L~~~ 608 (876)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
No 125
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-44 Score=398.89 Aligned_cols=214 Identities=30% Similarity=0.515 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. .+++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999963 358999999999999999999999999999999999999999999999999987765 35789
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+||+|++.+|. .|++|||.|+.. ..+. +++.++++..++.++. .....+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999996 599999998742 1222 3344555554443332 3344689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+...+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988753 7899999999998765 99999999999999999999987643
No 126
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=381.81 Aligned_cols=219 Identities=32% Similarity=0.537 Sum_probs=188.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~--~~ 452 (876)
+.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 46999999999963 3589999999999999999999999999999999999984 89999999999865 45
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCC--CC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
..++|+.++|++|++.+|+.|++||+.++.. .. . .+++.++++..++. +...+..+.++.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALW-------DEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------hhHHHHhhCCcccCCHHH
Confidence 6688999999999999999999999988631 11 1 12344444444332 233345677889999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhH
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 604 (876)
|||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999976 499999999999999999999
Q ss_pred HhcC
Q 002817 605 LISN 608 (876)
Q Consensus 605 L~~~ 608 (876)
+.+.
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 8764
No 127
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-44 Score=384.76 Aligned_cols=215 Identities=26% Similarity=0.489 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC--CCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~--~~~~~~lr~ 458 (876)
-|+++|++|+|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 245999999999999999999999999999999999999999999999999984 345677899
Q ss_pred ceEEEeccC--CCccccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 459 QIGLVNQEP--ALFATTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 459 ~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
.|+||+|+| .+|+.|++|||.++.. ..+.+ ++.++++..++.+ .......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 999999998 6789999999998642 22322 2344444433322 234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988754 799999999999987 599999999999999999999976
Q ss_pred C
Q 002817 608 N 608 (876)
Q Consensus 608 ~ 608 (876)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 128
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=379.00 Aligned_cols=218 Identities=31% Similarity=0.512 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCeeCCCC--CH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--DL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~--p---~~G~I~idG~di~~~--~~ 453 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999973 358999999999999999999999999999999999954 6 599999999998653 45
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.++||+|++.+|+.|++||+.++.. .. . ++++.++++..++. ++..+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIW-------DEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCc-------hhHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999987631 11 1 12233333333322 2223445667789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|++|||||||++||.++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998755 999999999999999999999
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 765
No 129
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-43 Score=390.27 Aligned_cols=229 Identities=27% Similarity=0.413 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCC----------CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 002817 381 HIEFKDVSFCYPSRP----------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~----------~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~ 450 (876)
-|+++|++++|+.+. ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999999
Q ss_pred CCHHH---HhcceEEEeccC--CCc-cccHHHHHHcCC----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 451 LDLKW---LRQQIGLVNQEP--ALF-ATTIRENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 451 ~~~~~---lr~~i~~V~Q~~--~Lf-~~TIreNI~~g~----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
++.+. +|++|+||+|+| .++ ..||.|||.++. +..+.++..+.++ .+.+.+ .|++ ........+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~--~~l~~v-gl~~---~~~~~~p~~ 161 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK--AMMLKV-GLLP---NLINRYPHE 161 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH--HHHHHc-CCCh---HHhcCCccc
Confidence 87654 678999999999 477 579999997642 1234444333221 111111 1211 123445678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
||||||||++|||||+.+|++||+|||||+||..+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 7899999999999976 9999999999999
Q ss_pred EecChhHHhcCCCchHHH
Q 002817 598 KTGSHEELISNPNSAYAA 615 (876)
Q Consensus 598 e~Gt~~eL~~~~~g~y~~ 615 (876)
|.|+.+++++++...|.+
T Consensus 242 e~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 242 ELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEcCHHHHHcCCCCHHHH
Confidence 999999998765555655
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.1e-43 Score=378.70 Aligned_cols=218 Identities=31% Similarity=0.514 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC---------
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--------- 452 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~--------- 452 (876)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999973 35899999999999999999999999999999999999999999999999997653
Q ss_pred ----HHHHhcceEEEeccCCCcc-ccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH
Q 002817 453 ----LKWLRQQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (876)
Q Consensus 453 ----~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG 524 (876)
...+|+.++||+|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 3467899999999999885 799999998631 112222211 122223333 3444455667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecC
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 601 (876)
||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999985 599999999999999999
Q ss_pred hhHHhcCC
Q 002817 602 HEELISNP 609 (876)
Q Consensus 602 ~~eL~~~~ 609 (876)
++++.+.+
T Consensus 231 ~~~~~~~~ 238 (252)
T TIGR03005 231 PDEIFRQP 238 (252)
T ss_pred HHHHhcCC
Confidence 99997653
No 131
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-44 Score=374.77 Aligned_cols=210 Identities=28% Similarity=0.440 Sum_probs=178.2
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---H
Q 002817 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---l 456 (876)
-|+++||+|+|+.+. ..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEeccCCCccc-cHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 457 R-QQIGLVNQEPALFAT-TIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 457 r-~~i~~V~Q~~~Lf~~-TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
| +.|+||+|++.+|.. |++||+.++.. .... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 679999999999875 99999987421 1122 2233333333 33334455667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
++||||++.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4799999999999999999999999999998876
No 132
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=377.10 Aligned_cols=220 Identities=27% Similarity=0.498 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--CH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~--~~ 453 (876)
.|+++|+++.|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3589999999999999999999999999999999999985 899999999998654 34
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
..+|+.++||+|++.+|+.|++||+.++.. ..+.+ ++.++++..++.++ ..........+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-------TSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCChhhCCHHHHH
Confidence 567889999999999999999999998631 12222 23334443333211 122334566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
|++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||++..+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999999999999997
Q ss_pred cCCC
Q 002817 607 SNPN 610 (876)
Q Consensus 607 ~~~~ 610 (876)
+.+.
T Consensus 242 ~~~~ 245 (258)
T PRK14268 242 HNPR 245 (258)
T ss_pred cCCC
Confidence 6533
No 133
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=380.29 Aligned_cols=218 Identities=29% Similarity=0.474 Sum_probs=184.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~~ 453 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 459999999999999999999999999999999999865 799999999999865 345
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|++++|++|++.+|++|++||+.++.. .. . ++.+.++++..++. ++..........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 578899999999999999999999997631 11 1 12233444333321 1122334566789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999876 4999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 765
No 134
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=379.62 Aligned_cols=219 Identities=29% Similarity=0.453 Sum_probs=188.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~ 452 (876)
..|+++|++|+|++ .++|+|+||++++||.+||+||||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999997 589999999999864 44
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCCC--C-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~--~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
...+|+.|+||+|++.+|..|++|||.++... . . .+++.++++..++.++ .++..+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQ-------VKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCch-------hhhhhcCCcccCCHHH
Confidence 66789999999999999999999999986421 1 1 1233444444443322 2345667788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998854 99999999999999999999
Q ss_pred HhcC
Q 002817 605 LISN 608 (876)
Q Consensus 605 L~~~ 608 (876)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9765
No 135
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=383.52 Aligned_cols=217 Identities=28% Similarity=0.488 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCC---CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC-HHHH
Q 002817 381 HIEFKDVSFCYPSRP---DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWL 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~---~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~-~~~l 456 (876)
-|+++|++++|++.. ++++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999998654 3567
Q ss_pred hcceEEEeccCC--CccccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 457 RQQIGLVNQEPA--LFATTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 457 r~~i~~V~Q~~~--Lf~~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
|++++||+|+|. +|..|+.||+.|+.. ..+ .+++.++++..++.++..+ ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 899999999984 777899999998742 112 2344555555555444333 346899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHh
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
++||||++++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998874 379999999999999889999999999999999999997
Q ss_pred cC
Q 002817 607 SN 608 (876)
Q Consensus 607 ~~ 608 (876)
+.
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 136
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=378.32 Aligned_cols=218 Identities=32% Similarity=0.521 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC---CCC--CccEEEECCeeCCCC--CH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF---YEP--LSGEILLDGNNIKGL--DL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~---~~p--~~G~I~idG~di~~~--~~ 453 (876)
.|+++|+++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 3589999999999999999999999999999999997 454 599999999999764 35
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|++|+||+|++.+|+.|++||+.++.. .. . ++++.++++..++ ++...+.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL-------WDEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCC-------CcchhhhhhCCcccCCHHHH
Confidence 678899999999999999999999987631 11 1 1223333333333 22233445677889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999855 999999999999999999999
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 865
No 137
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-44 Score=369.74 Aligned_cols=203 Identities=26% Similarity=0.456 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++|+|++ .++++|+||++++| .+||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999964 35999999999999 99999999999999999999999999999999999998877 77899999
Q ss_pred EEeccCCCccc-cHHHHHHcCC--CCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFAT-TIRENILYGK--DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~--~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
||+|++.+|.. |++||+.+.. ...+ ++++.++++..++.++ .++ ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-------AKK----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-------HhC----chhhCCHHHHHHHHHHHH
Confidence 99999999976 9999998742 1111 2334444444444322 333 345799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988778999999999999865 9999999999999876
No 138
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=386.21 Aligned_cols=217 Identities=27% Similarity=0.485 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC---------
Q 002817 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--------- 450 (876)
Q Consensus 382 I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~--------- 450 (876)
|+++|++|+|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1358999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcceEEEeccC--CCccccHHHHHHcCCC--CCCHHHH----HHHHHHHhhhhhHhcCc
Q 002817 451 ---------------LDLKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEI----TRAAKLSEAMSFISNLP 507 (876)
Q Consensus 451 ---------------~~~~~lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v----~~a~~~a~~~~~i~~lp 507 (876)
.+...+|+.||||+|+| .+|..|++|||.|+.. ..+.+++ .++++..++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGL-------D 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC-------C
Confidence 23567899999999986 6888999999999852 2333333 333333322 2
Q ss_pred hhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhh-hhc
Q 002817 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI-RNA 585 (876)
Q Consensus 508 ~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~a 585 (876)
. ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.|
T Consensus 156 ~---~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 156 E---SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred h---hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 1 12345667999999999999999999999999999999999999999999998764 489999999999976 559
Q ss_pred CEEEEEeCCeEEEecChhHHhcC
Q 002817 586 DVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 586 D~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|+|++|++|+|++.|+.+|+.+.
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998764
No 139
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.7e-44 Score=369.03 Aligned_cols=199 Identities=33% Similarity=0.565 Sum_probs=172.3
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. ...|++|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 458999999999999999999999999999999999999999999999998864 467789999
Q ss_pred EeccC--CCccccHHHHHHcCCCCC--CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 463 VNQEP--ALFATTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 463 V~Q~~--~Lf~~TIreNI~~g~~~~--~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
++|+| .+|+.|++||+.++.+.. ..+++.++++..++.++..+.| ..||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 478899999999875322 2345666676666655544333 48999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
|+++||||||++||+++.+.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 457999999999999875 9999999999985
No 140
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9.9e-44 Score=374.66 Aligned_cols=216 Identities=27% Similarity=0.467 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~i 460 (876)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 35899999999999999999999999999999999999999999999999998887655 45789
Q ss_pred EEEeccCCCccc-cHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+|++|++.+|.+ |++||+.++.+ ....++..+ .+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999998642 112222211 122334433 45555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998775 47899999999987655 99999999999999999999864
No 141
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-44 Score=379.41 Aligned_cols=219 Identities=30% Similarity=0.528 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCCCC--HH
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGLD--LK 454 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~~~--~~ 454 (876)
-+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 468999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcceEEEeccCCCccccHHHHHHcCCC--CC--C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 455 WLRQQIGLVNQEPALFATTIRENILYGKD--DA--T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~--~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
.+|+.++||+|++.+|++|++||+.++.. +. . ++++.++++..++.+ .+.+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-------ELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhcChhhCCHHHH
Confidence 67899999999999999999999988621 11 1 123334444443322 123345667789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hcCCC
Q 002817 606 ISNPN 610 (876)
Q Consensus 606 ~~~~~ 610 (876)
.+.+.
T Consensus 236 ~~~~~ 240 (251)
T PRK14244 236 FKNPQ 240 (251)
T ss_pred hcCCC
Confidence 86533
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=381.27 Aligned_cols=216 Identities=31% Similarity=0.545 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|++|
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeccC--CCccccHHHHHHcCCC--CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 461 GLVNQEP--ALFATTIRENILYGKD--DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 461 ~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+||+|+| .+++.|++|||.++.. ..+.++ +.++++..++. ........+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-----------DYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHhhCCcccCCHHHHHHHHHH
Confidence 9999998 4567899999998642 123333 23333333332 234445679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 4899999999999989999999999999999999998764
No 143
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=396.86 Aligned_cols=205 Identities=34% Similarity=0.531 Sum_probs=176.1
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH----hcceEEEeccCCCcc-c
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFA-T 472 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l----r~~i~~V~Q~~~Lf~-~ 472 (876)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 468999999999996 5
Q ss_pred cHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 002817 473 TIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546 (876)
Q Consensus 473 TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE 546 (876)
|++|||.++.. ..+ .+++.++++..++.++..+ ...+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998631 111 2345555665555444433 345899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCCchH
Q 002817 547 ATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (876)
Q Consensus 547 ~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y 613 (876)
|||+||+.+.+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++++.+...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998874 4899999999999875 499999999999999999999987644434
No 144
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=378.30 Aligned_cols=219 Identities=32% Similarity=0.526 Sum_probs=187.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCC--CCC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIK--GLD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~--~~~ 452 (876)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ..+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999963 358999999999999999999999999999999999988 69999999999986 356
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCCC--CC---HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--AT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~--~~---~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
...+|+.|+||+|++.+|..|++||+.++... .. ++++.++++..++ +.+.++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 77889999999999999999999999987521 11 2233444444433 223334456667899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeC-----------Ce
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-----------RK 595 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~-----------G~ 595 (876)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999998754 999999996 67
Q ss_pred EEEecChhHHhcC
Q 002817 596 IVKTGSHEELISN 608 (876)
Q Consensus 596 Ive~Gt~~eL~~~ 608 (876)
+++.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999765
No 145
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=378.21 Aligned_cols=219 Identities=27% Similarity=0.472 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~~ 453 (876)
-|+++|++|+|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999973 358999999999999999999999999999999999987 699999999999853 456
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CCCHHH-----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEE-----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~-----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|++++|++|++.+|..|++|||.++.. +..+++ +.++++..++ .+++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAI-------WDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------cchHHHHHhcCcccCCHHHH
Confidence 678999999999999999999999987631 222221 1222222211 12344455677889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hcCC
Q 002817 606 ISNP 609 (876)
Q Consensus 606 ~~~~ 609 (876)
.+.+
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 7653
No 146
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.7e-43 Score=369.21 Aligned_cols=211 Identities=25% Similarity=0.453 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~-~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
|+++||+++|+.... .++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999975 456788999
Q ss_pred EEEeccCCCccc-cHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+|++|++.+|.. |++||+.+... ..+.++..+. +.+.++.+ |++........+||||||||++||||+++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR-----LEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999985 99999986431 1222222211 11122222 34444556677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 47999999999998765 9999999999998865
No 147
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=373.51 Aligned_cols=218 Identities=25% Similarity=0.399 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~ 459 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998887654 6888
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
++|++|++.+|.+ |++||+.++....+.++..+.+ .+.+..++...++ .......||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999999875222222222211 1112222222222 2345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhc
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998864 4899999999999764 599999999999999999999974
No 148
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.6e-43 Score=380.12 Aligned_cols=225 Identities=28% Similarity=0.424 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH
Q 002817 382 IEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 382 I~~~~vsf~y~~~------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~ 455 (876)
|+++||+|+|+.. .+.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1356999999999999999999999999999999999999999999999999998877643
Q ss_pred ---HhcceEEEeccCC--Cc-cccHHHHHHcCCC---CCC----HHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCC
Q 002817 456 ---LRQQIGLVNQEPA--LF-ATTIRENILYGKD---DAT----MEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQL 521 (876)
Q Consensus 456 ---lr~~i~~V~Q~~~--Lf-~~TIreNI~~g~~---~~~----~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~L 521 (876)
+|+.|+||+|+|. ++ ..|++|||.++.. ... ++++.++++.. |++ .....++.+|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV-----------GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCChhhC
Confidence 6889999999983 44 4799999975421 111 22333333333 332 2234567799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEE
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 598 (876)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999988753 7999999999999975 99999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 002817 599 TGSHEELISNPNSAYAALV 617 (876)
Q Consensus 599 ~Gt~~eL~~~~~g~y~~l~ 617 (876)
.|+++++....+..++.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999875344444443
No 149
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-43 Score=381.69 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCeeCCCCCHHHH
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---GEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~---G~I~idG~di~~~~~~~l 456 (876)
..|+++|++|+|++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999742 2458999999999999999999999999999999999999998 899999999988888888
Q ss_pred hcceEEEeccC--CCccccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 457 RQQIGLVNQEP--ALFATTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 457 r~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
|++|+||+|+| .+++.|++|||.|+.. ..+.+ ++.++++..++.++. .....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHH
Confidence 99999999998 4678999999998742 22333 344455555544433 34447999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHh
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999999899999999999999999999987
Q ss_pred cC
Q 002817 607 SN 608 (876)
Q Consensus 607 ~~ 608 (876)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 64
No 150
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.6e-44 Score=371.89 Aligned_cols=204 Identities=36% Similarity=0.485 Sum_probs=172.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH----HH
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK----WL 456 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~----~l 456 (876)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 14699999999999999999999999999999999999999999999999999887743 24
Q ss_pred hcceEEEeccCCCccc-cHHHHHHcCCCC--CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 457 RQQIGLVNQEPALFAT-TIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~-TIreNI~~g~~~--~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
|++++||+|++.+|.. |++||+.++... ... +++.++++.. |++.....+..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERV-----------GLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhcChhhcCHHHHHHH
Confidence 6789999999999976 999999986421 111 2233333332 333344455679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeE
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~I 596 (876)
+||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7999999999999889999999999975
No 151
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.9e-43 Score=380.08 Aligned_cols=223 Identities=30% Similarity=0.477 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH---HHh
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~---~lr 457 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999877654 457
Q ss_pred cceEEEeccCCCccc-cHHHHHHcCCC---CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 458 QQIGLVNQEPALFAT-TIRENILYGKD---DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~-TIreNI~~g~~---~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
++++||+|++.+|.. |++||+.++.. ..+.+ ++.++++..+ ++ .....+..+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-------l~----~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVG-------LR----GAAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcC-------Ch----hhhhCChhhCCHHHHHHH
Confidence 889999999999986 99999987531 11222 2222222222 22 222334568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 7899999999998866 9999999999999999999998
Q ss_pred cCCCchHHHHH
Q 002817 607 SNPNSAYAALV 617 (876)
Q Consensus 607 ~~~~g~y~~l~ 617 (876)
+.....+..++
T Consensus 233 ~~~~~~~~~~~ 243 (269)
T PRK11831 233 ANPDPRVRQFL 243 (269)
T ss_pred cCCcHHHHHHH
Confidence 75333444444
No 152
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-43 Score=373.86 Aligned_cols=211 Identities=30% Similarity=0.495 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~i 460 (876)
|+++||+++|++ .++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999974 35899999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEeccCCCccc-cHHHHHHcCCCCC--CHHH-HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 461 GLVNQEPALFAT-TIRENILYGKDDA--TMEE-ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~~~--~~~~-v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
+|++|++.+|.. |++||+.++.... ..++ ..++++.. +++.........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999999874221 1111 12222111 22333445567789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988754 7899999999999986 999999999999999999997
No 153
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=393.55 Aligned_cols=218 Identities=32% Similarity=0.541 Sum_probs=185.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 358999999999999999999999999999999999999999999999999987664 5789
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
||||+|++.+|. .|++|||.|+.. ..+. +++.++++..++.++.+ .+..+||||||||+|||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999996 599999999852 1222 23444444444433332 33458999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNP 609 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~ 609 (876)
|||+++|++||||||||+||..+...+.+.|+++. .+.|+|+|||+++.+. -||+|++|++|+|++.|+.+|+..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999988887764 3799999999999865 59999999999999999999998865
Q ss_pred CchH
Q 002817 610 NSAY 613 (876)
Q Consensus 610 ~g~y 613 (876)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 4433
No 154
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-43 Score=374.01 Aligned_cols=218 Identities=28% Similarity=0.506 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--CH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~--~~ 453 (876)
-|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+| ++|+|.++|+++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3589999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
...|+.|+|++|++.+|+.|++|||.++.. +. . ++++.++++..+ +.+++.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA-------LWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhc-------CchhhHHHhhcChhhCCHHHH
Confidence 678899999999999999999999998742 11 1 122333333332 233444567788889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 765
No 155
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.3e-43 Score=357.80 Aligned_cols=178 Identities=37% Similarity=0.643 Sum_probs=167.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++|+|+.. +.++++|+||++++||+++|+||+|||||||+++|.|+++|++|+|.+||.++.++ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23589999999999999999999999999999999999999999999999998776 677899999
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
||+|++++|+.|++||| ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEec
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 600 (876)
|||||||++||+++.+.+.+.|+++.+++|+|++||++..++.||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998887789999999999999999999999999999865
No 156
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-43 Score=377.00 Aligned_cols=222 Identities=27% Similarity=0.501 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCCC-HH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLD-LK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~~-~~ 454 (876)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+++ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4689999999999999999999999999999999999986 7999999999998764 45
Q ss_pred HHhcceEEEeccCCCccccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 455 WLRQQIGLVNQEPALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
.+|++|+||+|++.+|+.|++|||.++.. ..+.++..+.+. ...+.+ .+++.+++.......+||||||||++|
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ--ARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHH--HHHHHc-CCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 78899999999999999999999998641 134444433221 111111 234444455677788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999988777999999999999765 999999999999999999999875
No 157
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=379.46 Aligned_cols=213 Identities=30% Similarity=0.477 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 3689999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCCC----------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKDD----------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~~----------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
+||+|++.++. .|++||+.++... ...+++.++++..++.+++.. ...+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHH
Confidence 99999987765 4999999986311 122345555555554433322 3358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+|+.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999986 59999999999999999999986
Q ss_pred c
Q 002817 607 S 607 (876)
Q Consensus 607 ~ 607 (876)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
No 158
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-43 Score=372.21 Aligned_cols=218 Identities=29% Similarity=0.541 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~-----~G~I~idG~di~~--~~~ 453 (876)
.|+++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|.|+++|+ +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999973 35999999999999999999999999999999999999997 6999999999865 345
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CC-CH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.++||+|++.+|+.|++||+.++.. .. .. +.+.++++..++ .++..+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAAL-------WDEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCC-------chhhhhHhhCCcccCCHHHH
Confidence 688999999999999999999999998641 11 11 222333333333 22333446677889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887678999999999999876 799999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 754
No 159
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=375.42 Aligned_cols=218 Identities=28% Similarity=0.499 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--CH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~--~~ 453 (876)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--C-CC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--D-AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~-~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.++|++|++.+|..|++||+.++.. . .. ++++.++++..++.+.+ ++....+..+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 567889999999999999999999997631 1 11 22344445444443222 2345667889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+|+||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999765 4999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 764
No 160
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-43 Score=378.87 Aligned_cols=214 Identities=30% Similarity=0.529 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC-HHHHhcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~-~~~lr~~i 460 (876)
|+++|++++|+. +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 235999999999999999999999999999999999999999999999999998776 46788999
Q ss_pred EEEeccCC--CccccHHHHHHcCCCC--CCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 461 ~~V~Q~~~--Lf~~TIreNI~~g~~~--~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+||+|+|. +++.|++|||.++... .+.++ +.++++.. |++.........||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI-----------GLEKYRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC-----------CCHHHhcCCcccCCHHHHHHHHHH
Confidence 99999985 5778999999987421 23232 23333332 333334455679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++++|+|+||||||++||+.+...+.+.|+++. +++|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 48999999999999989999999999999999999998754
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-43 Score=381.74 Aligned_cols=223 Identities=30% Similarity=0.528 Sum_probs=184.9
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC----C-C
Q 002817 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----L-D 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~----~-~ 452 (876)
+.|+++|++++|++++ ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999997432 1358999999999999999999999999999999999999999999999999853 2 4
Q ss_pred HHHHhcceEEEeccC--CCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 453 LKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
...+|++|+||+|+| .+|+.|++|||.++.. ....++..+.+ ..+.+.+ .||+++ ......+||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~~---~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLV-QLPEDY---VKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCChhH---hcCChhhCCHHHHHH
Confidence 567889999999998 4788899999998642 22333332222 1222221 344333 345667999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 799999999999875 5999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.+.
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 764
No 162
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=380.19 Aligned_cols=214 Identities=29% Similarity=0.496 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++++|++++|+.+ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35899999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeccC--CCccccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 462 LVNQEP--ALFATTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 462 ~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
||+|+| .+|+.|++||+.++.. ..+.+ .+.++++..++.+++ ......||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHHH
Confidence 999998 4788999999987641 22322 344555554444333 2334689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++|+++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988753 799999999999985 6999999999999999999999864
No 163
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-43 Score=366.53 Aligned_cols=203 Identities=27% Similarity=0.435 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||++++|+.++|+||||||||||+++|.|+++|++|+|.++|.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999988765 56788999
Q ss_pred EEeccCCCc-cccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALF-ATTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf-~~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
||+|++.+| +.|++||+.++. ...+.+++.++++..++.+.. ......||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 579999998763 223455666666666654432 234568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998765 47999999999999865 9999999999999876
No 164
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.4e-43 Score=373.27 Aligned_cols=217 Identities=33% Similarity=0.510 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC--------H
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--------L 453 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~--------~ 453 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 889999999973 35899999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEeccCCCcc-ccHHHHHHcCC---CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~---~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
..+|++++||+|++.+|. .|++||+.++. .....++..+.+ .+.++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA-----RELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999999885 69999998752 112222222111 1223322 333334456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 47899999999999865 99999999999999999999876
Q ss_pred C
Q 002817 608 N 608 (876)
Q Consensus 608 ~ 608 (876)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 4
No 165
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=373.57 Aligned_cols=217 Identities=28% Similarity=0.491 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC------CCCHHH
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK------GLDLKW 455 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~------~~~~~~ 455 (876)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 35999999999999999999999999999999999999999999999999873 234567
Q ss_pred HhcceEEEeccCCCccc-cHHHHHHcCC---CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 456 LRQQIGLVNQEPALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 456 lr~~i~~V~Q~~~Lf~~-TIreNI~~g~---~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
+|++|+|++|++.+|.+ |++|||.++. .....++..+ .+.++++.+ |++........+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 88999999999999975 9999997532 1122222211 122233333 44444555667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||++++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCc
Confidence 999999999999999999999999999999998875 48999999999999865 999999999999999999987643
No 166
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=375.88 Aligned_cols=218 Identities=29% Similarity=0.495 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCC--CCCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIK--GLDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~--~~~~ 453 (876)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 358999999999999999999999999999999999986 48999999999985 3456
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCC--C---CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~--~---~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
..+|++|+||+|++.+|+.|++|||.++... . ..+++.++++.+++.+++ +......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 7789999999999999999999999986421 1 123344455555543333 223466778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEe---------CCeEEE
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIVK 598 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~---------~G~Ive 598 (876)
++||||++++|+||||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999998765 99999999 899999
Q ss_pred ecChhHHhcC
Q 002817 599 TGSHEELISN 608 (876)
Q Consensus 599 ~Gt~~eL~~~ 608 (876)
.|+.+|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999765
No 167
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.1e-43 Score=391.95 Aligned_cols=208 Identities=30% Similarity=0.499 Sum_probs=176.3
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCe----eCCCCCHHHHh----cceEEEeccCC
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN----NIKGLDLKWLR----QQIGLVNQEPA 468 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~----di~~~~~~~lr----~~i~~V~Q~~~ 468 (876)
..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||. ++..++.+.+| ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45799999999999999999999999999999999999999999999996 67777766553 58999999999
Q ss_pred Ccc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 469 LFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 469 Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
+|+ .|++||+.||.. ..+ .+++.++++..++.++... ...+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999998742 111 2344555665555443322 3357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhh-hhcCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.++.+.|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 999999999999999999999988754 79999999999987 559999999999999999999998764444443
No 168
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=378.97 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 24589999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEeccCC--CccccHHHHHHcCCCC--CCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 461 GLVNQEPA--LFATTIRENILYGKDD--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 461 ~~V~Q~~~--Lf~~TIreNI~~g~~~--~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+||+|+|. ++..|+++|+.++... ...+ ++.++++..++.++ ...+..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHH
Confidence 99999995 4567899999987421 2222 23333333333222 2335678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 7899999999999988999999999999999999998764
No 169
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.1e-43 Score=369.33 Aligned_cols=209 Identities=29% Similarity=0.496 Sum_probs=172.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---Hh
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---lr 457 (876)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEeccCCCcc-ccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 458 -QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 458 -~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+.|+||+|++.+|. .|++||+.++.. ....++..+. +.++++.+ |++........+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 68999999999985 699999987521 1122211111 11222222 3334444556789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCCeEE
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIV 597 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Iv 597 (876)
|++++|+||||||||++||+++...+.+.|+++. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998875 378999999999999999999999999986
No 170
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.8e-43 Score=384.97 Aligned_cols=231 Identities=23% Similarity=0.408 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCeeCCCCCHHHH
Q 002817 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~---~G~I~idG~di~~~~~~~l 456 (876)
-++++|++++|+.+ ....+++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999642 2246899999999999999999999999999999999999996 9999999999999988776
Q ss_pred h----cceEEEeccC--CCcc-ccHHHHHHcCC---CCCCHHHH-HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 457 R----QQIGLVNQEP--ALFA-TTIRENILYGK---DDATMEEI-TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 457 r----~~i~~V~Q~~--~Lf~-~TIreNI~~g~---~~~~~~~v-~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
| +.|+||+|+| .++. .|+.+|+.... ...+.++. .++.++.. . ..||++.+ .++....+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~---~-vgL~~~~~-~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD---A-VKMPEARK-RMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---H-cCCCChHH-HhcCCcccCCHHH
Confidence 4 4899999999 3543 58888775421 12233332 22222222 1 24566543 3677889999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
|||++||||++.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+.
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 7899999999999875 999999999999999999
Q ss_pred hHHhcCCCchHHHH
Q 002817 603 EELISNPNSAYAAL 616 (876)
Q Consensus 603 ~eL~~~~~g~y~~l 616 (876)
+++.+.+...|.+.
T Consensus 247 ~~i~~~p~~pyt~~ 260 (330)
T PRK09473 247 RDVFYQPSHPYSIG 260 (330)
T ss_pred HHHHhCCCCHHHHH
Confidence 99998766666653
No 171
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-43 Score=367.98 Aligned_cols=209 Identities=25% Similarity=0.436 Sum_probs=177.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3599999999999999999999999999999999999999999999999998763 357788999
Q ss_pred EEeccCCCccc-cHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFAT-TIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
|++|++.+|.. |++||+.++.. ..+ .+++.++++..++.++. ++ ...+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-------DR----LVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-------hC----ChhhCCHHHHHHHHHHHH
Confidence 99999998875 99999987521 111 22344444444443322 22 335899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++.+|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988653 7899999999999875 999999999999999998775
No 172
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.8e-43 Score=367.78 Aligned_cols=203 Identities=36% Similarity=0.589 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999974 3589999999999999999999999999999999999999999999999999776543 57899
Q ss_pred EEeccCCCcc-ccHHHHHHcCCC--CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFA-TTIRENILYGKD--DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
|++|++.+|. .|++||+.++.. ..+.++ +.++++..++ +........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-----------EHLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HHHHhCChhhCCHHHHHHHHHHHH
Confidence 9999999985 699999988631 122222 3333333333 333444557899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
++++|+++||||||++||+++.+.+.+.|+++. .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998875 37999999999998876 9999999999999876
No 173
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-43 Score=371.98 Aligned_cols=221 Identities=27% Similarity=0.500 Sum_probs=186.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCeeCCCC--C
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--D 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~--p---~~G~I~idG~di~~~--~ 452 (876)
+.|+++|++++|++ .++|+|+||+|++||.++|+||+|||||||+++|.|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999973 359999999999999999999999999999999999986 4 699999999998653 4
Q ss_pred HHHHhcceEEEeccCCCcc-ccHHHHHHcCCC--C-CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH
Q 002817 453 LKWLRQQIGLVNQEPALFA-TTIRENILYGKD--D-ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~-~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG 524 (876)
...+|+.|+||+|++.+|. .|++||+.++.. . .+. +++.++++..++.+++ .......+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 5678999999999999998 599999987531 1 111 2334444444433222 22344567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChh
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHE 603 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~ 603 (876)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999985 49999999999999999999
Q ss_pred HHhcCCC
Q 002817 604 ELISNPN 610 (876)
Q Consensus 604 eL~~~~~ 610 (876)
++...+.
T Consensus 233 ~~~~~~~ 239 (252)
T PRK14256 233 KIFTTPE 239 (252)
T ss_pred HHHhCCC
Confidence 9976533
No 174
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=373.39 Aligned_cols=218 Identities=29% Similarity=0.524 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCC-CCCHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK-GLDLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~-~~~~~ 454 (876)
.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 4589999999999999999999999999999999999986 5999999999986 45677
Q ss_pred HHhcceEEEeccCCCccccHHHHHHcCCC--CCC-----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 455 WLRQQIGLVNQEPALFATTIRENILYGKD--DAT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~~-----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
.+|+.++|++|++.+|..|++||+.++.. ... .+++.++++..++. ++..+.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW-------DEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc-------hhhhHHhhcCcccCCHHHHH
Confidence 88999999999999999999999998642 111 12233444444332 22334456667899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
|++||||++.+|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999986
Q ss_pred cC
Q 002817 607 SN 608 (876)
Q Consensus 607 ~~ 608 (876)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
No 175
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.9e-43 Score=372.91 Aligned_cols=217 Identities=34% Similarity=0.556 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC--CHHHHhcc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL--DLKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~--~~~~lr~~ 459 (876)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+. +..++|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 3589999999999999999999999999999999999999999999999999864 34678899
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
++|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++.....+...||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999885 699999988631 122222211 112223332 444445556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998775 47999999999999865 999999999999999999998764
No 176
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.8e-43 Score=366.48 Aligned_cols=210 Identities=30% Similarity=0.454 Sum_probs=186.6
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH----HHHhc
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWLRQ 458 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~----~~lr~ 458 (876)
.+.|+.|+|+.+ .++++|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|.++.+++. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 568999999743 469999999999999999999999999999999999999999999999999877653 34677
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
.++|++|+|.+|+.|++|||.++.+ ...++..++++..++.+++..+|.|++|.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998753 345566777787788788888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 539 PSILLLDEATSALDAESENSVQE--ALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~--~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
|+++||||||++||..+...+.+ .++.+. +++|+|++||+++.++.||+|++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999888866 444443 3689999999999999999999999984
No 177
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=378.85 Aligned_cols=220 Identities=29% Similarity=0.520 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC----CHHH
Q 002817 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKW 455 (876)
Q Consensus 382 I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~----~~~~ 455 (876)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999999764 4567
Q ss_pred HhcceEEEeccC--CCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCCCHHHHHHHH
Q 002817 456 LRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 456 lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~LSGGQkQRIa 530 (876)
+|+.|+|++|+| .+|+.|++|||.++.. ..+.++..+.++ +.++.+ |++ .....+..+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAR-----EKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 6889999999988631 223333322211 112221 222 1234556789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 47899999999998865 999999999999999999998764
No 178
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.7e-43 Score=382.67 Aligned_cols=217 Identities=27% Similarity=0.487 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 6999999999963 46999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEeccCCCcc-ccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|||||++.+|. .|++||+.|.. ...+.++..+.+ ..+.+++ .|++..++.++ +||||||||++|||||+.
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~----~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV--PPLLEFA-KLENKADAKVG----ELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCchHhcCchh----hCCHHHHHHHHHHHHHhC
Confidence 99999999885 69999998632 122333332221 1222222 35666677664 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999998875 47999999999999966 999999999999999999999754
No 179
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-43 Score=375.57 Aligned_cols=212 Identities=27% Similarity=0.475 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeccCCCccc-cHHHHHHcCCCC----------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 462 LVNQEPALFAT-TIRENILYGKDD----------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~~----------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
|++|++.+|.+ |++||+.++... ...+++.++++..++.+ ........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-----------LADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----------HHcCCcccCCHHHHHHHH
Confidence 99999998876 999999987311 11223444444444332 233456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
||||++++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998864 47999999999999865 99999999999999999999864
No 180
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.9e-43 Score=374.85 Aligned_cols=215 Identities=30% Similarity=0.502 Sum_probs=182.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC--------
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-------- 451 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~-------- 451 (876)
+.|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999973 4589999999999999999999999999999999999999999999999998642
Q ss_pred -----CHHHHhcceEEEeccCCCcc-ccHHHHHHcCC---CCCCH----HHHHHHHHHHhhhhhHhcCchhhhhhh-cCC
Q 002817 452 -----DLKWLRQQIGLVNQEPALFA-TTIRENILYGK---DDATM----EEITRAAKLSEAMSFISNLPERFETQV-GER 517 (876)
Q Consensus 452 -----~~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~---~~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~v-Ge~ 517 (876)
....+|+.++||+|++.+|. .|++||+.++. ..... +++.++++..+ +.... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG-----------IDERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CChhhhhCC
Confidence 13567889999999999997 59999998752 11122 22333333332 22222 456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 518 G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
...||||||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 67999999999999999999999999999999999999999999998875 48999999999999986 99999999999
Q ss_pred EEEecChhHHhcC
Q 002817 596 IVKTGSHEELISN 608 (876)
Q Consensus 596 Ive~Gt~~eL~~~ 608 (876)
+++.|+++++.+.
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999998764
No 181
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=369.71 Aligned_cols=206 Identities=34% Similarity=0.507 Sum_probs=172.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997411 1469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+||+|++.+|. .|++||+.++.. ..+ .+++.++++..++.+ .......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHH
Confidence 99999999987 699999987631 111 223334444433332 333445689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEe--CCeEEEecChh
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ--GRKIVKTGSHE 603 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~--~G~Ive~Gt~~ 603 (876)
|++++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|+|+++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998874 37999999999998754 99999999 79999988753
No 182
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=371.63 Aligned_cols=226 Identities=30% Similarity=0.519 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~-----~G~I~idG~di~~--~~~ 453 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|+ +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 46999999999999999999999999999999999999875 8999999999875 345
Q ss_pred HHHhcceEEEeccCCCccc-cHHHHHHcCCC--CC-CHHHHHHHHHH-HhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKD--DA-TMEEITRAAKL-SEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~~--~~-~~~~v~~a~~~-a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
..+|+.|+|++|++.+|.. |++||+.++.. .. .+++..+.+.. ....+....+++..+ ....+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~----~~~~~LS~G~~qr 156 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLK----TPATGLSGGQQQR 156 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhc----CCcccCCHHHHHH
Confidence 6788999999999999984 99999987542 11 23333332221 111111111233333 3456899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.+ ||+|++|++|++++.|++++++.
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999886 99999999999999999999986
Q ss_pred CCCchH
Q 002817 608 NPNSAY 613 (876)
Q Consensus 608 ~~~g~y 613 (876)
.+...+
T Consensus 237 ~~~~~~ 242 (252)
T PRK14272 237 NPRDER 242 (252)
T ss_pred CcCcHH
Confidence 533333
No 183
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.1e-43 Score=368.61 Aligned_cols=209 Identities=27% Similarity=0.469 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++++|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++..++...+|+.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 3599999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEeccCCCccccHHHHHHcCC---CCC-CHHHHHHHHHHHhhhhhHhcCchhh-hhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 461 GLVNQEPALFATTIRENILYGK---DDA-TMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 461 ~~V~Q~~~Lf~~TIreNI~~g~---~~~-~~~~v~~a~~~a~~~~~i~~lp~G~-~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
+|++|++.+|+.|++||+.++. ... ..+++.+ .++.+ |+ ++.......+||||||||++||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD---------DLERF--ALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHH---------HHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999998752 111 1112222 23333 23 2345667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEE-eCCeEEEecChh
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVV-QGRKIVKTGSHE 603 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl-~~G~Ive~Gt~~ 603 (876)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++| +++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998875 378999999999999999999999 478888999995
No 184
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-43 Score=372.17 Aligned_cols=218 Identities=30% Similarity=0.492 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--CH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~--~~ 453 (876)
.|+++|++++|++ .++|+|+||+|++||.++|+||+|||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3589999999999999999999999999999999999985 799999999999653 44
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCC--C-CH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~--~-~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.++|++|++.+|+.|++||+.++... . +. +++.++++..++. +++......+...||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW-------DEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCc-------hhhhhHhhCCcccCCHHHH
Confidence 5778999999999999999999999986411 1 11 2334444444432 2222334567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999866 999999999999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 764
No 185
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.2e-43 Score=370.96 Aligned_cols=221 Identities=23% Similarity=0.410 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~i 460 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999973 35899999999999999999999999999999999999999999999999998887664 45679
Q ss_pred EEEeccCCCccc-cHHHHHHcCCCCCC-H-HH---HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGKDDAT-M-EE---ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~~~~-~-~~---v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
+|++|++.+|.+ |++||+.++..... . .. ...........++++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 99999998642100 0 00 00000111122333333 44444556677999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
++++|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999975 99999999999999999999864
No 186
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-43 Score=371.17 Aligned_cols=218 Identities=23% Similarity=0.442 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~ 459 (876)
.|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 36999999999999999999999999999999999999999999999999998887644 6789
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
++|++|++.+|. .|++||+.++.. ..+.++.. ..+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999987 599999987631 11222211 2223344444 455556677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999998888764 4899999999998765 4999999999999999999998753
No 187
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.3e-43 Score=366.00 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=170.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH---HHHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~---~~lr~ 458 (876)
|+++|++++|+.+ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 358999999999999999999999999999999999999999999999999988764 35788
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
.++||+|++.+|. .|++||+.++.. ..+.+ ++.++++..++.+. ......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHH
Confidence 9999999999997 599999988631 12222 33333433333222 233446899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeE
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 596 (876)
|||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 57999999999999986 999999999975
No 188
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-43 Score=377.21 Aligned_cols=213 Identities=29% Similarity=0.458 Sum_probs=180.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC--CCCHHHHhcc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~--~~~~~~lr~~ 459 (876)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 35899999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEeccCC--CccccHHHHHHcCC--CCCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 460 IGLVNQEPA--LFATTIRENILYGK--DDATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 460 i~~V~Q~~~--Lf~~TIreNI~~g~--~~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
|+||+|++. ++..|+.||+.++. ...+.++ +.++++..++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHH
Confidence 999999985 67789999998752 1222222 3333333333222 223456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998874 47899999999999855 999999999999999999998764
No 189
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=372.39 Aligned_cols=205 Identities=30% Similarity=0.438 Sum_probs=177.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999964 35899999999999999999999999999999999999999999999998763 567899
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 461 GLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
+|++|++.+|. .|++||+.++.....++++.++++..++.+ ....+..+||||||||++||||++++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 699999998743222344555555544433 334556799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+.++
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccccc
Confidence 9999999999999999999999998864 37999999999998754 99999999999999988653
No 190
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=376.36 Aligned_cols=219 Identities=30% Similarity=0.557 Sum_probs=186.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~ 452 (876)
..|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999963 359999999999999999999999999999999999997 689999999999864 45
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCC-----CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD-----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~-----~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
...+|++++||+|++.+|..|++||+.++.. ....+++.++++..++.+.+ ......+..+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHH
Confidence 6678999999999999999999999987531 11123444555444432211 22345677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEE-EEeCCeEEEecChhHH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA-VVQGRKIVKTGSHEEL 605 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Ii-vl~~G~Ive~Gt~~eL 605 (876)
|++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988777899999999999876 99975 5799999999999998
Q ss_pred hcC
Q 002817 606 ISN 608 (876)
Q Consensus 606 ~~~ 608 (876)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 764
No 191
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-43 Score=382.98 Aligned_cols=226 Identities=29% Similarity=0.450 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCC-------CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH
Q 002817 381 HIEFKDVSFCYPSRP-------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~-------~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~ 453 (876)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2468999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcceEEEeccCC--Ccc-ccHHHHHHcCC---CCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 454 K---WLRQQIGLVNQEPA--LFA-TTIRENILYGK---DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 454 ~---~lr~~i~~V~Q~~~--Lf~-~TIreNI~~g~---~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
+ .+|++|+||+|+|. |+. -||.+|+..+. ...+ .+++.++++..++. |++++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR------PEHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC------hHHhcC----CCcc
Confidence 4 57889999999994 554 49999986421 1112 22344444444331 233443 4568
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 7999999999999975 9999999999999
Q ss_pred EecChhHHhcCCCchHHHH
Q 002817 598 KTGSHEELISNPNSAYAAL 616 (876)
Q Consensus 598 e~Gt~~eL~~~~~g~y~~l 616 (876)
|.|+.+++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998654556553
No 192
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-43 Score=373.19 Aligned_cols=221 Identities=25% Similarity=0.448 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH-hcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l-r~~ 459 (876)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999998886554 456
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCCCC--------------HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDDAT--------------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~~~--------------~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG 524 (876)
++||+|++.+|.. |++|||.++..... .++-.+ ....+.++++.+ |++.....+..+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999985 99999998631100 000000 111222334444 5556667778899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999988753 7899999999999866 99999999999999999
Q ss_pred hhHHhcC
Q 002817 602 HEELISN 608 (876)
Q Consensus 602 ~~eL~~~ 608 (876)
.+++...
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 9988653
No 193
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.3e-43 Score=366.01 Aligned_cols=201 Identities=32% Similarity=0.510 Sum_probs=171.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH---HHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~---~lr~ 458 (876)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999887643 5788
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCC------CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKD------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~------~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
.++|++|+|.+|. .|++||+.++.. ....+++.++++..++.+++.+ ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 9999999999986 699999988631 1122344555555554333322 235899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
|||++++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998864 48999999999999886 99999999985
No 194
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-43 Score=371.72 Aligned_cols=221 Identities=29% Similarity=0.536 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~~ 453 (876)
.|+++||+++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+.+ |++|+|.+||.++.+ .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 359999999999999999999999999999999999864 489999999999875 346
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC--CC-CH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|++++||||++.+|+.|++||+.++.. +. +. +++.++++..++.+++. ......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 678999999999999999999999997631 11 12 23445555555544432 223556789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. +|+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998776 899999999999999999999
Q ss_pred hcCCCc
Q 002817 606 ISNPNS 611 (876)
Q Consensus 606 ~~~~~g 611 (876)
...+.+
T Consensus 233 ~~~~~~ 238 (250)
T PRK14266 233 FINPKD 238 (250)
T ss_pred HhCCCC
Confidence 765333
No 195
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=376.72 Aligned_cols=221 Identities=30% Similarity=0.543 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC----CHH
Q 002817 381 HIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~----~~~ 454 (876)
.|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 14699999999999999999999999999999999999999999999999998754 356
Q ss_pred HHhcceEEEeccC--CCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHHHHHHH
Q 002817 455 WLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRI 529 (876)
Q Consensus 455 ~lr~~i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGGQkQRI 529 (876)
..|+.|+||+|+| .+|+.|++|||.++.. ..+.++..+. +.+.++.+ |+++ ....+..+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 7788999999998 5888999999988642 2233332221 11222222 3332 23455679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhc
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998874 4789999999999886 599999999999999999999875
Q ss_pred C
Q 002817 608 N 608 (876)
Q Consensus 608 ~ 608 (876)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
No 196
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=373.03 Aligned_cols=220 Identities=28% Similarity=0.468 Sum_probs=188.9
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCC----
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK---- 449 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~---- 449 (876)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 357999999999973 3599999999999999999999999999999999999975 7999999998874
Q ss_pred CCCHHHHhcceEEEeccCCCccccHHHHHHcCCC--CC-----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 450 GLDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 450 ~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
..+...+|+.|+|++|++.+|.+|++|||.++.. .. .++++.++++.+++ .++..+..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAAL-------WDEVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCC-------chhhhHHHhCCcccCC
Confidence 3345678999999999999999999999998631 11 12344444444433 2244456677788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecC
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 601 (876)
||||||++||||++++|+++||||||++||..+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877899999999999986 499999999999999999
Q ss_pred hhHHhcC
Q 002817 602 HEELISN 608 (876)
Q Consensus 602 ~~eL~~~ 608 (876)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998754
No 197
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=8.8e-43 Score=366.49 Aligned_cols=212 Identities=35% Similarity=0.523 Sum_probs=175.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH---HHHh
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~---~~lr 457 (876)
|+++||+++|++.. +.++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1268999999999999999999999999999999999999999999999999988774 6788
Q ss_pred cceEEEeccCC--Cc-cccHHHHHHcCCC----CCCHHHHHHHHHHHhhhhhHhcCchhh-hhhhcCCCCCCCHHHHHHH
Q 002817 458 QQIGLVNQEPA--LF-ATTIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERF-ETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 458 ~~i~~V~Q~~~--Lf-~~TIreNI~~g~~----~~~~~~v~~a~~~a~~~~~i~~lp~G~-~T~vGe~G~~LSGGQkQRI 529 (876)
++++|++|++. ++ +.|++||+.++.. ...+++..++. .+.++.+ |+ +.....+..+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 99999999993 44 5799999986521 11112111111 1223322 23 2345566789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEec
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 600 (876)
+||||++.+|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988754 799999999999987 59999999999998865
No 198
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.5e-43 Score=364.97 Aligned_cols=201 Identities=38% Similarity=0.647 Sum_probs=171.1
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 2468999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EeccC--CCccccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 463 VNQEP--ALFATTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 463 V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
++|++ .+++.|++||+.++.. ..+.+ ++.+.++..+ ++.....+..+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVG-----------LEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999988632 12222 2223333322 3333445567999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 47999999999999987 99999999985
No 199
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-43 Score=373.06 Aligned_cols=219 Identities=33% Similarity=0.505 Sum_probs=187.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~--~~ 452 (876)
+.|+++|++++|++ .++|+|+||+|++||+++|+|++|||||||+++|.|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 3589999999999999999999999999999999999985 48999999999864 45
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCC------CCC-HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD------DAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~------~~~-~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
...+|++|+||+|++.+|+.|++||+.++.. +.+ ++.+.++++..++.+++. ......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 6778999999999999999999999987631 111 123445555555543322 22355678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEe-----CCeEEEe
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-----GRKIVKT 599 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~-----~G~Ive~ 599 (876)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988778999999999999865 99999998 5999999
Q ss_pred cChhHHhcC
Q 002817 600 GSHEELISN 608 (876)
Q Consensus 600 Gt~~eL~~~ 608 (876)
|+++|+.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998764
No 200
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-43 Score=383.00 Aligned_cols=227 Identities=23% Similarity=0.374 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCeeCCCCCHHHH
Q 002817 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 382 I~~~~vsf~y~~~~~-~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~----p~~G~I~idG~di~~~~~~~l 456 (876)
|+++|++++|+.+.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974321 358999999999999999999999999999999999998 489999999999999988766
Q ss_pred hc----ceEEEeccCC--Ccc-ccHHHHHH----cCC--C-CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 457 RQ----QIGLVNQEPA--LFA-TTIRENIL----YGK--D-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 457 r~----~i~~V~Q~~~--Lf~-~TIreNI~----~g~--~-~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
|+ .|+||+|+|. ++. -|+.+|+. ... + ....+++.++++..++.+. .........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 54 6999999995 332 36665553 221 1 1122334455554444221 123456778999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEe
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKT 599 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~ 599 (876)
||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988753 789999999999985 5999999999999999
Q ss_pred cChhHHhcCCCchHHHH
Q 002817 600 GSHEELISNPNSAYAAL 616 (876)
Q Consensus 600 Gt~~eL~~~~~g~y~~l 616 (876)
|+.+++.+++...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999997655556543
No 201
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=371.17 Aligned_cols=212 Identities=28% Similarity=0.438 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++..++...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 35899999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEeccCCC-ccccHHHHHHcCCCCC------CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPAL-FATTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~L-f~~TIreNI~~g~~~~------~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
|++|++.+ ++.|++||+.++.... .++++.++++..++.+ ........||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 99999987 6789999999864211 1223344444433322 2334567999999999999999
Q ss_pred Hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 535 IV------KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 535 l~------~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++ .+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4799999999999886 5999999999999999999998
Q ss_pred hc
Q 002817 606 IS 607 (876)
Q Consensus 606 ~~ 607 (876)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
No 202
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7e-43 Score=350.72 Aligned_cols=172 Identities=40% Similarity=0.677 Sum_probs=162.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++. +.++++|+||++++||.++|+||+|||||||+++|.|+++|++|+|.+||.++.+++.+.+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 246899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++|++.+|+.|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeE
Q 002817 542 LLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~I 596 (876)
+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999999999999999975
No 203
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-43 Score=361.72 Aligned_cols=201 Identities=29% Similarity=0.481 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++. . .|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEeccCCCccc-cHHHHHHcCCC-C-----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFAT-TIRENILYGKD-D-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~-~-----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
|++|++.+|.+ |++||+.++.. . ..++++.++++..++.+..... ..+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999975 99999988642 1 1234455666665554443333 35899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998875 37899999999999866 9999999999998865
No 204
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1e-42 Score=372.17 Aligned_cols=212 Identities=27% Similarity=0.461 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|+++.|++ .++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|.++.+++...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEeccCC-CccccHHHHHHcCCCCC----------CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 462 LVNQEPA-LFATTIRENILYGKDDA----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 462 ~V~Q~~~-Lf~~TIreNI~~g~~~~----------~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
|++|++. .+..|++||+.++.... ..+++.++++..++ ..........||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-----------SHLADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCHHHHHHHH
Confidence 9999985 45689999999874110 11123333333333 22234456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++|+..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998875 4789999999999995 599999999999999999998864
No 205
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.1e-42 Score=365.70 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=175.5
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---H
Q 002817 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~-~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---l 456 (876)
-|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974221 35899999999999999999999999999999999999999999999999998887654 3
Q ss_pred -hcceEEEeccCCCccc-cHHHHHHcCC--CCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 457 -RQQIGLVNQEPALFAT-TIRENILYGK--DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 457 -r~~i~~V~Q~~~Lf~~-TIreNI~~g~--~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
++.++|++|++.+|.. |++||+.++. .... .+++.++++..++.+++. .....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3689999999999875 9999998742 1111 233444555444433332 3345899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999874
No 206
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.5e-42 Score=379.29 Aligned_cols=217 Identities=27% Similarity=0.461 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 3589999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEeccCCCcc-ccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+||+|++.+|. .|++||+.+.. ...+.++..+.+. .+.+.+ .|++..++.+ .+||||||||++||||+++
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~-~l~~~~~~~~----~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFA-RLESKADVRV----ALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHC-CChhHhcCch----hhCCHHHHHHHHHHHHHhc
Confidence 99999999885 69999997532 1223333333221 222222 3455555554 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 57899999999999865 999999999999999999998754
No 207
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-43 Score=367.27 Aligned_cols=211 Identities=39% Similarity=0.572 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. .++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 578999999974 3599999999999999999999999999999999999999999999999999876643 67899
Q ss_pred EEeccCCCccc-cHHHHHHcCCC------CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFAT-TIRENILYGKD------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~------~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
||+|++.+|.+ |++||+.++.. ...++++.++++..++.+++... ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-----------PSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999965 99999987631 11233455555555555544433 36999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988754 8999999999999865 999999999999999999998764
No 208
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-43 Score=375.70 Aligned_cols=214 Identities=32% Similarity=0.537 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC--CCHHHHhcc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~--~~~~~lr~~ 459 (876)
|+++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. .+...+|+.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2358999999999999999999999999999999999999999999999999852 334578899
Q ss_pred eEEEeccC--CCccccHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 460 IGLVNQEP--ALFATTIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 460 i~~V~Q~~--~Lf~~TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
|+|++|+| .+|+.|++|||.++.. ..+.+ ++.++++..++.++ .+ ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~----~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-------EN----KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-------hc----CChhhCCHHHHHHHHH
Confidence 99999998 5788999999998641 12222 23334433333221 12 2356899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||++.+|+++||||||++||+.+...+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4899999999999987 5999999999999999999998764
No 209
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=375.69 Aligned_cols=220 Identities=30% Similarity=0.503 Sum_probs=185.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCCC--C
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--D 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~~--~ 452 (876)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 358999999999999999999999999999999999864 4999999999998653 3
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCC--CC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKD--DA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
...+|++++||+|++.+|+.|++|||.++.. .. + .+++.++++..++.+. .......+...|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-------VSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-------hhhHhhCChhhCCHHH
Confidence 3467899999999999999999999998641 11 1 1233444444443221 1122345677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
|||++||||++.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 99999999999999999999
Q ss_pred HhcCC
Q 002817 605 LISNP 609 (876)
Q Consensus 605 L~~~~ 609 (876)
+.+.+
T Consensus 268 ~~~~~ 272 (286)
T PRK14275 268 LFTNP 272 (286)
T ss_pred HHhCC
Confidence 98653
No 210
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=370.34 Aligned_cols=218 Identities=28% Similarity=0.440 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--CH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~--~~ 453 (876)
.+.+++.++.|.. .++|+|+||++++||+++|+|++|||||||+++|.|+++| ++|+|.++|+++.+. +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5889999999963 4689999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCC-----CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKD-----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~-----~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
..+|+.|+||+|++.+|+.|++|||.++.. ....+++.++++..++.+.+ ....++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 577889999999999999999999998742 11234566666666553333 223456788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEe--------CCeEEEe
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ--------GRKIVKT 599 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~--------~G~Ive~ 599 (876)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778999999999998765 99999996 8999999
Q ss_pred cChhHHhcC
Q 002817 600 GSHEELISN 608 (876)
Q Consensus 600 Gt~~eL~~~ 608 (876)
|+++++++.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999865
No 211
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=370.51 Aligned_cols=226 Identities=27% Similarity=0.464 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC------eeCCCCCHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG------NNIKGLDLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG------~di~~~~~~ 454 (876)
.|+++|++++|++ .++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999974 3589999999999999999999999999999999999999997666654 677777888
Q ss_pred HHhcceEEEeccCCCccc-cHHHHHHcCCC--CC-CHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 455 WLRQQIGLVNQEPALFAT-TIRENILYGKD--DA-TMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~~--~~-~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
.+|++++|++|+|.+|.+ |++||+.++.. .. ..++ +.++++..++.+++ .......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 899999999999999975 99999997632 11 2222 34444444443222 1234556788999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|+++||||||++||..+++.+.+.|.++.+++|+|+|||+++.+. .||++++|++|++++.|+++|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999994 5999999999999999999999
Q ss_pred hcCCCchHHHH
Q 002817 606 ISNPNSAYAAL 616 (876)
Q Consensus 606 ~~~~~g~y~~l 616 (876)
.+.+...|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87644344443
No 212
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=370.77 Aligned_cols=218 Identities=32% Similarity=0.534 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~--~~~ 453 (876)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5899999999974 3589999999999999999999999999999999999974 79999999999853 456
Q ss_pred HHHhcceEEEeccCCCcc-ccHHHHHHcCCC---CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 454 KWLRQQIGLVNQEPALFA-TTIRENILYGKD---DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~---~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
..+|+.++||+|++.+|. .|++||+.++.. ..+. +.+.++++..++.+ +..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 678999999999999997 599999987531 1111 22333444433322 12234456678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEe------CCeEEE
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQ------GRKIVK 598 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~------~G~Ive 598 (876)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877899999999999975 599999997 899999
Q ss_pred ecChhHHhcC
Q 002817 599 TGSHEELISN 608 (876)
Q Consensus 599 ~Gt~~eL~~~ 608 (876)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
No 213
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.8e-43 Score=364.46 Aligned_cols=198 Identities=28% Similarity=0.512 Sum_probs=166.3
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999964 35899999999999999999999999999999999999999999999998764 57889999
Q ss_pred EeccCCC---ccccHHHHHHcCCCCC----------CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 463 VNQEPAL---FATTIRENILYGKDDA----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 463 V~Q~~~L---f~~TIreNI~~g~~~~----------~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
|+|++.+ |+.|++||+.++.... ..+++.++++..++.++ ......+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-----------ADRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHH
Confidence 9999976 6689999999864211 12233444444443322 2334568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
+||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998865 67899999999999865 9999999986 66654
No 214
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.2e-42 Score=365.13 Aligned_cols=215 Identities=35% Similarity=0.522 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 359999999999999999999999999999999999999999999999999987653 478899
Q ss_pred EEeccCCCccc-cHHHHHHcCCCC--CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~~--~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
||||+|.+|.+ |++||+.++... .+.++.. ..+.+.++.++ +.-.......+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~~--l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELVQ--LEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHcC--CHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999975 999999886421 1111111 11122333332 12223344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988654 7999999999999765 999999999999999999999754
No 215
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=372.43 Aligned_cols=214 Identities=27% Similarity=0.452 Sum_probs=185.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 359999999999999999999999999999999999999999999999999998888888999
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCC-CC---------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGK-DD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~-~~---------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
|+||+|++.+|. .|++||+.++. +. ...+++.++++..++.++ ......+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHH
Confidence 999999998874 69999998863 11 112234455554444332 334567999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+.+++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 7899999999998755 999999999999999999998
Q ss_pred hc
Q 002817 606 IS 607 (876)
Q Consensus 606 ~~ 607 (876)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
No 216
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4e-42 Score=368.05 Aligned_cols=226 Identities=23% Similarity=0.419 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCee-----CCCCCHHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-----IKGLDLKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~d-----i~~~~~~~ 455 (876)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999998 87776654
Q ss_pred ----HhcceEEEeccCC--Cc-cccHHHHHHcCC---CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 456 ----LRQQIGLVNQEPA--LF-ATTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 456 ----lr~~i~~V~Q~~~--Lf-~~TIreNI~~g~---~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
+|+.++||+|++. ++ +.|+.|||.+.. .....++..+ .++++++.++-+ ++.....+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3668999999984 33 358999986531 1112222222 233445555322 245677889999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecCh
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~ 602 (876)
|||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 789999999999997 4999999999999999999
Q ss_pred hHHhcCCCchHHH
Q 002817 603 EELISNPNSAYAA 615 (876)
Q Consensus 603 ~eL~~~~~g~y~~ 615 (876)
+++...+...|.+
T Consensus 237 ~~~~~~~~~~~~~ 249 (258)
T PRK11701 237 DQVLDDPQHPYTQ 249 (258)
T ss_pred HHHhcCCCCHHHH
Confidence 9998653334443
No 217
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=363.93 Aligned_cols=209 Identities=33% Similarity=0.510 Sum_probs=181.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++||+++|+.. ..|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 6899999999632 2399999999999999999999999999999999999999999999999876543 57899
Q ss_pred EEeccCCCccc-cHHHHHHcCC-CC-----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFAT-TIRENILYGK-DD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~-~~-----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
|++|++.+|.+ |++|||.++. +. ..++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998763 21 12345666666666655544443 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988743 7899999999999865 999999999999999999999864
No 218
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.7e-42 Score=362.62 Aligned_cols=204 Identities=29% Similarity=0.477 Sum_probs=172.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH---HHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~---~lr~ 458 (876)
|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 24689999999999999999999999999999999999999999999999999887654 3788
Q ss_pred ceEEEeccCCC-ccccHHHHHHcCC--CCCCHHHH----HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPAL-FATTIRENILYGK--DDATMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~L-f~~TIreNI~~g~--~~~~~~~v----~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
.++||+|+|.+ ++.|++||+.++. ...++++. .++++..++.+ .......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-----------KAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCchhCCHHHHHHHHH
Confidence 99999999987 5679999999863 12333332 23333333222 2234457899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEE
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 598 (876)
|||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998874 47899999999999976 89999999999863
No 219
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=370.54 Aligned_cols=219 Identities=28% Similarity=0.502 Sum_probs=186.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~-----~G~I~idG~di~~--~~ 452 (876)
+.|+++|++|+|++ ..+|+|+||++++||.+||+||+|||||||+++|.|+++|+ +|+|.++|.|+.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35899999999999999999999999999999999999985 8999999999853 45
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCC------CCCC-HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGK------DDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~------~~~~-~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
...+|+.++|++|++.+|..|++||+.++. +..+ .+.+.++++..++.+++ +...+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-------KHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 567899999999999999999999998752 1111 22344455454443332 224566778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeC-----CeEE
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG-----RKIV 597 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~-----G~Iv 597 (876)
|||++||||++++|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998753 48999999999999865 999999999 9999
Q ss_pred EecChhHHhcC
Q 002817 598 KTGSHEELISN 608 (876)
Q Consensus 598 e~Gt~~eL~~~ 608 (876)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999765
No 220
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=368.52 Aligned_cols=219 Identities=31% Similarity=0.513 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~--p---~~G~I~idG~di~~--~~~ 453 (876)
-|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++ | ++|+|.++|.++.+ .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 358999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCC--CCC-C----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGK--DDA-T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~--~~~-~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.++||+|++.+|+.|++||+.++. ... . ++++.++++..++. ++..........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 67788999999999999999999998763 111 1 12233333333332 2223344566789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
||++||||++++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999865 999999999999999999998
Q ss_pred hcCC
Q 002817 606 ISNP 609 (876)
Q Consensus 606 ~~~~ 609 (876)
...+
T Consensus 235 ~~~~ 238 (252)
T PRK14255 235 FLNP 238 (252)
T ss_pred hcCC
Confidence 7653
No 221
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=377.23 Aligned_cols=219 Identities=29% Similarity=0.549 Sum_probs=188.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CC
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-----p~~G~I~idG~di~~--~~ 452 (876)
..|+++|++++|++ .++|+|+||+|++||+++|+||+|||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 358999999999999999999999999999999999986 689999999999865 34
Q ss_pred HHHHhcceEEEeccCCCccccHHHHHHcCCCCC-------------------CHHHHHHHHHHHhhhhhHhcCchhhhhh
Q 002817 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA-------------------TMEEITRAAKLSEAMSFISNLPERFETQ 513 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~-------------------~~~~v~~a~~~a~~~~~i~~lp~G~~T~ 513 (876)
...+|+.|+||+|++.+|+.||+||+.++.... .++++.++++.. .+++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA-------ALWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHc-------CCchhhhHH
Confidence 667889999999999999999999999863210 012222333322 345556677
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEE-EEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVI-AVV 591 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~I-ivl 591 (876)
...+..+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 78889999999999999999999999999999999999999999999999988778999999999999865 9997 578
Q ss_pred eCCeEEEecChhHHhcC
Q 002817 592 QGRKIVKTGSHEELISN 608 (876)
Q Consensus 592 ~~G~Ive~Gt~~eL~~~ 608 (876)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998764
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=384.10 Aligned_cols=211 Identities=29% Similarity=0.463 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC----CHHHHh
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKWLR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~----~~~~lr 457 (876)
|++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+. +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999963 2 23 89999999999999999999999999999999999999999999998753 345678
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
++|+||+|++.+|. .|++|||.|+.+....+++.++++..++.++.. .+..+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 699999999865444556666666665544333 344689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~ 609 (876)
++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988754 7899999999998765 9999999999999999999998764
No 223
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-42 Score=361.71 Aligned_cols=205 Identities=34% Similarity=0.537 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC--CCHHHHhcc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~--~~~~~lr~~ 459 (876)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999974 358999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
|+|++|++.+|. .|++||+.++.. +.+.++..+.+ .+.++.+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA-----LELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHH-----HHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 699999988631 22222222111 1223332 344444555679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeE
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 596 (876)
+++|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999975
No 224
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.6e-42 Score=379.48 Aligned_cols=217 Identities=28% Similarity=0.478 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ..+|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.++|.|+.+.+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998654 5788999
Q ss_pred EEEeccCCCc-cccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPALF-ATTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~Lf-~~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|||||++.+| +.|++||+.+.. ...+.++..+.++ .+.++ ..|++..++.++ +||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~~~~----~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADARVS----DLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCCChh----hCCHHHHHHHHHHHHHhc
Confidence 9999999986 569999998532 1122233322221 12222 245666666664 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+|++.|+.+++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 48999999999999865 999999999999999999999754
No 225
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.3e-42 Score=375.92 Aligned_cols=216 Identities=22% Similarity=0.421 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++++|++++|++ ..+|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.++.+ +...+|+++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 4567899999
Q ss_pred EEeccCCCccc-cHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|+||++.+|.. |++||+.+... ....++..+.+ .+.++.+ |++.....+..+||||||||++||||++++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV-----EEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986431 11222222211 1112222 344444556679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999988778999999999998876 999999999999999999998754
No 226
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.9e-42 Score=369.48 Aligned_cols=228 Identities=24% Similarity=0.436 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH
Q 002817 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~ 454 (876)
-|+++||+++|+.. .+.++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999999866666
Q ss_pred HHhcceEEEeccCC--Ccc-ccHHHHHHcCC---CCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH
Q 002817 455 WLRQQIGLVNQEPA--LFA-TTIRENILYGK---DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~--Lf~-~TIreNI~~g~---~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG 524 (876)
..|+.++||+|++. ++. -|+.||+.++. .... .+++.++++..++. |+..+ ....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~----~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL------PDHAS----YYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC------hHHHh----cCchhcCHH
Confidence 77788999999985 444 48999987642 1111 23344444444431 12222 234689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
||||++||||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999987 99999999999999999
Q ss_pred hhHHhcCC-CchHHHHHH
Q 002817 602 HEELISNP-NSAYAALVQ 618 (876)
Q Consensus 602 ~~eL~~~~-~g~y~~l~~ 618 (876)
++++.+.+ ...+++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 234 TADVLASPLHELTKRLIA 251 (267)
T ss_pred HHHHhcCCCCHHHHHHHH
Confidence 99998753 234555554
No 227
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=379.68 Aligned_cols=228 Identities=20% Similarity=0.335 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCeeCCCCCHHH
Q 002817 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~----p~~G~I~idG~di~~~~~~~ 455 (876)
-|+++|++++|+.+ ....+|+|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999642 12468999999999999999999999999999999999986 68999999999999888766
Q ss_pred Hh----cceEEEeccCCC--c-cccHHHHHHcCCC----------C--CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcC
Q 002817 456 LR----QQIGLVNQEPAL--F-ATTIRENILYGKD----------D--ATMEEITRAAKLSEAMSFISNLPERFETQVGE 516 (876)
Q Consensus 456 lr----~~i~~V~Q~~~L--f-~~TIreNI~~g~~----------~--~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe 516 (876)
++ +.|+||+|+|.. + ..||.+|+..... + ...+++.++++..++.+. ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 53 479999999973 3 3589999974210 0 012334445554444321 112234
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeC
Q 002817 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQG 593 (876)
Q Consensus 517 ~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~ 593 (876)
....||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5579999999999999999999999999999999999999999999998754 7899999999999965 999999999
Q ss_pred CeEEEecChhHHhcCCCchHHHH
Q 002817 594 RKIVKTGSHEELISNPNSAYAAL 616 (876)
Q Consensus 594 G~Ive~Gt~~eL~~~~~g~y~~l 616 (876)
|+|+|.|+.+++.+.+...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999987655567653
No 228
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=368.59 Aligned_cols=223 Identities=26% Similarity=0.370 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCeeCCCC-----C
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGL-----D 452 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~---~G~I~idG~di~~~-----~ 452 (876)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46899999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcceEEEeccCCCcc-ccHHHHHHcCCCCC--------------CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCC
Q 002817 453 LKWLRQQIGLVNQEPALFA-TTIRENILYGKDDA--------------TMEEITRAAKLSEAMSFISNLPERFETQVGER 517 (876)
Q Consensus 453 ~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~~~--------------~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~ 517 (876)
...+|+.++|++|++.+|. .|++||+.++..+. ..+++.++++..++ +......
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM-----------VHFAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCC-----------HHHHhCC
Confidence 4567889999999999887 59999999874211 11223333333333 2223445
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhh-hcCEEEEEeCC
Q 002817 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGR 594 (876)
Q Consensus 518 G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~-~aD~Iivl~~G 594 (876)
..+||||||||++||||++.+|++|||||||++||.++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 67899999999999999999999999999999999999999999999875 3799999999999864 59999999999
Q ss_pred eEEEecChhHHhcCCCchHHHHHHHH
Q 002817 595 KIVKTGSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 595 ~Ive~Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
++++.|+++++ + .....+++...
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHhhh
Confidence 99999999996 2 33455555443
No 229
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-42 Score=360.04 Aligned_cols=205 Identities=25% Similarity=0.483 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++++|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 358999999999999999999999999999999999999999999999988753 5678999
Q ss_pred EEeccCCCccc-cHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|++|++.+|.+ |++||+.++.. ..+..+..+ .+.++++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999987531 111111111 122223333 334444556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998764 47899999999998865 9999999999998865
No 230
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=368.26 Aligned_cols=218 Identities=32% Similarity=0.477 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~--~~~ 453 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|+++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999973 3589999999999999999999999999999999999864 69999999999864 345
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCC-----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~-----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
..+|+.|+|++|++.+|+.|++|||.++... ..++++.++++.+++.+++ ..........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHH
Confidence 5788999999999999999999999986421 1123344555555543322 223456678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEe---------CCeEEE
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIVK 598 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~---------~G~Ive 598 (876)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988778999999999998864 99999998 899999
Q ss_pred ecChhHHhcC
Q 002817 599 TGSHEELISN 608 (876)
Q Consensus 599 ~Gt~~eL~~~ 608 (876)
.|+.+|+.+.
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999999765
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=369.03 Aligned_cols=216 Identities=25% Similarity=0.390 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC--------ccEEEECCeeCCCCCH
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL--------SGEILLDGNNIKGLDL 453 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~--------~G~I~idG~di~~~~~ 453 (876)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 35999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcceEEEeccCC-CccccHHHHHHcCCC-CCC-----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 454 KWLRQQIGLVNQEPA-LFATTIRENILYGKD-DAT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~-Lf~~TIreNI~~g~~-~~~-----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
..+|+.++||+|++. +|..|++||+.++.. ... .++..+ .+.+.++.+ |+++..+....+||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGE-----IAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 889999999999986 578899999998641 110 011111 112223322 455666777889999999
Q ss_pred HHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCC
Q 002817 527 QRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGR 594 (876)
Q Consensus 527 QRIaiARAl~---------~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G 594 (876)
||++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999988754 789999999999986 59999999999
Q ss_pred eEEEecChhHHhc
Q 002817 595 KIVKTGSHEELIS 607 (876)
Q Consensus 595 ~Ive~Gt~~eL~~ 607 (876)
+|++.|+.+++++
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999999864
No 232
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.9e-42 Score=366.13 Aligned_cols=212 Identities=26% Similarity=0.378 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHHHH-hc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-RQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~~l-r~ 458 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+ ++|++|+|.++|.++..++.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 4589999999999999999999999999999999999 47999999999999998887665 45
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCCCC---------CCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCC-CCCH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGKDD---------ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGI-QLSG 523 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~~~---------~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~-~LSG 523 (876)
.++||+|++.+|.+ |++||+.+.... .+.++ +.++++.. .|++++ ...... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~---~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL-------GMDEEF---LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHc-------CCchhh---cccccccCcCH
Confidence 69999999999875 899999764211 11111 22222222 233221 112222 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh--cCEEEEEeCCeEEEec
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~G 600 (876)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 47899999999999976 7999999999999999
Q ss_pred ChhHHh
Q 002817 601 SHEELI 606 (876)
Q Consensus 601 t~~eL~ 606 (876)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 998653
No 233
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-42 Score=361.34 Aligned_cols=210 Identities=32% Similarity=0.537 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 27999999999999999999999999999999999999999999999999987655 378999
Q ss_pred EEeccCCCcc-ccHHHHHHcCCCC--CCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFA-TTIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~~--~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
||+|++.+|. .|++||+.++... .+. +++.++++..++.++ +.....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL-----------LNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------HhcCcccCCHHHHHHHHHHHH
Confidence 9999999995 7999999976421 122 233344444433333 334456899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
++++|++++|||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988653 8999999999999875 999999999999999999998765
No 234
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.5e-42 Score=357.00 Aligned_cols=202 Identities=37% Similarity=0.559 Sum_probs=174.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++++||+++|+. .++|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEeccCCCccc-cHHHHHHcCC-CC-----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFAT-TIRENILYGK-DD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~-~~-----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
||+|+|.+|.. |++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999874 9999998752 11 12345556666666555444443 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
++++|+++||||||++||.++.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999988753 7899999999998865 99999999999999875
No 235
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.9e-42 Score=361.78 Aligned_cols=214 Identities=26% Similarity=0.407 Sum_probs=171.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCeeCCCCCHHHHh
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~---p~~G~I~idG~di~~~~~~~lr 457 (876)
++|+||+|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998542 3579999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cceEEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhh-cCCCCCCCHHHHHHHHHHHHH
Q 002817 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~v-Ge~G~~LSGGQkQRIaiARAl 535 (876)
+.++|++|++.+|++ |++||+.++..........++.+...++++ .++....+.+ .....+||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH--HHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 999999999999987 999999975311100000011111111110 1222223333 345679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCc-hh-hhhcCEEEEEeCCeEEEec
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL-ST-IRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl-s~-i~~aD~Iivl~~G~Ive~G 600 (876)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||++ .. .+.||+|++|++|+++++|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 478999999998 34 5669999999999999876
No 236
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.4e-42 Score=367.86 Aligned_cols=227 Identities=26% Similarity=0.419 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-
Q 002817 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL- 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~- 453 (876)
-|+++||+|+|+.. .+.++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 13569999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcceEEEeccCC--Cc-cccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHH
Q 002817 454 --KWLRQQIGLVNQEPA--LF-ATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGG 524 (876)
Q Consensus 454 --~~lr~~i~~V~Q~~~--Lf-~~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGG 524 (876)
..+|+.++||+|++. ++ +.|++||+.+... +.+.+ .....+.+.+..+ |+++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 357889999999983 43 4799999975321 11111 1112233334433 5553 456677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHHH
Q 002817 602 HEELISNPNSAYAA 615 (876)
Q Consensus 602 ~~eL~~~~~g~y~~ 615 (876)
++|+.+. .+.|..
T Consensus 236 ~~~~~~~-~~~~~~ 248 (268)
T PRK10419 236 VGDKLTF-SSPAGR 248 (268)
T ss_pred hhhccCC-CCHHHH
Confidence 9999865 444443
No 237
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.1e-41 Score=360.19 Aligned_cols=224 Identities=25% Similarity=0.387 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCeeCCCCCHHHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p----~~G~I~idG~di~~~~~~~l 456 (876)
.|+++|++++| + .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 3589999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEeccCC-Ccc--ccHHHHHHcCC----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 457 RQQIGLVNQEPA-LFA--TTIRENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 457 r~~i~~V~Q~~~-Lf~--~TIreNI~~g~----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
++.|+||+|++. .|. .|+.+|+.+.. ....++++.++++..++.+ .++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHH
Confidence 467999999984 454 58888875421 1223344555555544322 12345667789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988743 7899999999999864 9999999999999999999998
Q ss_pred cCCCc-hHHHHHH
Q 002817 607 SNPNS-AYAALVQ 618 (876)
Q Consensus 607 ~~~~g-~y~~l~~ 618 (876)
+.+.. ..+.++.
T Consensus 230 ~~~~~~~~~~~~~ 242 (254)
T PRK10418 230 NAPKHAVTRSLVS 242 (254)
T ss_pred hCCCCHHHHHHHH
Confidence 65333 3333443
No 238
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-41 Score=349.68 Aligned_cols=191 Identities=24% Similarity=0.363 Sum_probs=165.0
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCeeCCCCCHHHH
Q 002817 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~---p~~G~I~idG~di~~~~~~~l 456 (876)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+||+|||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 46899999999853 35679999999999999999999999999999999999999 89999999999998765 467
Q ss_pred hcceEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 457 RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
|++++|++|++.+|. .|++|||.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 889999999998886 5999999876310 0 1234568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCC-chhh-hhcCEEEEEeCCeEEEec
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHR-LSTI-RNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHr-ls~i-~~aD~Iivl~~G~Ive~G 600 (876)
+++|+++||||||++||+++++.+.+.|+++.+ +.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 4676776554 5665 569999999999999865
No 239
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.7e-41 Score=377.94 Aligned_cols=209 Identities=32% Similarity=0.501 Sum_probs=177.4
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC----HHHHhcceE
Q 002817 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWLRQQIG 461 (876)
Q Consensus 386 ~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~----~~~lr~~i~ 461 (876)
|++++|++ .. + |+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+ ...+|++|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 22 4 999999999999999999999999999999999999999999999987543 346788999
Q ss_pred EEeccCCCcc-ccHHHHHHcCCCCCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 462 LVNQEPALFA-TTIRENILYGKDDATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
||+|++.+|. .|++||+.|+......+ ++.+.++.. |++........+||||||||++||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999996 49999999975322211 233333333 3344455566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 99999999999999999999999999988754 7899999999999865 99999999999999999999987643
No 240
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.7e-41 Score=354.51 Aligned_cols=208 Identities=31% Similarity=0.477 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH---HHh
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~---~lr 457 (876)
++++|+++.|+... +..+|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.++|.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 24699999999999999999999999999999999999999999999999999877753 568
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+.|+|++|+|.+|. .|+.||+.++.. ..+.++..+.+ .+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA-----RAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 89999999999987 699999997642 22333322211 1222222 3333344455689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeE
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~I 596 (876)
|++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999988753 7999999999998888999999999986
No 241
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2e-41 Score=370.25 Aligned_cols=200 Identities=24% Similarity=0.416 Sum_probs=170.1
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cHH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIr 475 (876)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++||||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 458999999999999999999999999999999999999999999999999976 446778999999999999875 999
Q ss_pred HHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 002817 476 ENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (876)
Q Consensus 476 eNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS 549 (876)
||+.+... ..+.+ ++.++++..++ ++ ....+..+||||||||++||||++++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~----~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFEL-------GE----AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hh----HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987421 12222 23333333322 22 2233456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 550 ALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 550 aLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998874 47999999999999875 999999999999999999998754
No 242
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=340.27 Aligned_cols=170 Identities=36% Similarity=0.617 Sum_probs=158.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++++|++++|++ .++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 35899999999999999999999999999999999999999999999999998766 67889999
Q ss_pred EEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
||+|++.+|.+ |++||+. ||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999886 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeE
Q 002817 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKI 596 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~I 596 (876)
++||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998875 4689999999999887 5999999999974
No 243
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=360.40 Aligned_cols=207 Identities=26% Similarity=0.444 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999964 3589999999999999999999999999999999999999999999999998653 24699
Q ss_pred EEeccCCCcc-ccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|++|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE-----IAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 699999987631 112221111 112222222 233333455679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEe--CCeEEEecChh
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ--GRKIVKTGSHE 603 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~--~G~Ive~Gt~~ 603 (876)
|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+ +|+|++.++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998863 38999999999999865 99999999 59999988753
No 244
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-42 Score=351.17 Aligned_cols=223 Identities=37% Similarity=0.589 Sum_probs=194.9
Q ss_pred cEEEEeEEEECCCCCC---------------------CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 002817 381 HIEFKDVSFCYPSRPD---------------------VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~---------------------~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G 439 (876)
.|+++||+.-+..+++ ..-++|+||+|+.||...|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5788888877754321 1237899999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHh----cceEEEeccCCCc-cccHHHHHHcCCC------CCCHHHHHHHHHHHhhhhhHhcCch
Q 002817 440 EILLDGNNIKGLDLKWLR----QQIGLVNQEPALF-ATTIRENILYGKD------DATMEEITRAAKLSEAMSFISNLPE 508 (876)
Q Consensus 440 ~I~idG~di~~~~~~~lr----~~i~~V~Q~~~Lf-~~TIreNI~~g~~------~~~~~~v~~a~~~a~~~~~i~~lp~ 508 (876)
+|++||.|+..++.+.|| ++++.|+|.--|| +-||.||..||.+ ...++...++++++++++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988874 5799999999888 5799999999962 234566788899999988877666
Q ss_pred hhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchh-hhhc
Q 002817 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLST-IRNA 585 (876)
Q Consensus 509 G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~a 585 (876)
..||||+|||+.|||||..||||||+|||.|||||--....|+-|.++. -+||+|.|||+|.. ++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4799999999999999999999999999999999999999988886653 37999999999996 5669
Q ss_pred CEEEEEeCCeEEEecChhHHhcCCCchHH
Q 002817 586 DVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (876)
Q Consensus 586 D~Iivl~~G~Ive~Gt~~eL~~~~~g~y~ 614 (876)
|||..|++|+|++.||++|++.++-..|-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 99999999999999999999987655553
No 245
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.9e-41 Score=359.52 Aligned_cols=226 Identities=24% Similarity=0.408 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCee-----CCCCCHHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-----IKGLDLKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~d-----i~~~~~~~ 455 (876)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.+ +.+++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999988 77776553
Q ss_pred ----HhcceEEEeccCC--C-ccccHHHHHHcCC---CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 456 ----LRQQIGLVNQEPA--L-FATTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 456 ----lr~~i~~V~Q~~~--L-f~~TIreNI~~g~---~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
+++.|+|++|++. + +..|+.||+.+.. ......+. ...+.++++.++-+ ++........|||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEID-PTRIDDLPRAFSGGM 153 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCC-hhhhhcCchhcCHHH
Confidence 3567999999984 2 3458899986421 00111111 12334455555321 245667788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
|||++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998864 37999999999999985 999999999999999999
Q ss_pred hHHhcCCCchHHH
Q 002817 603 EELISNPNSAYAA 615 (876)
Q Consensus 603 ~eL~~~~~g~y~~ 615 (876)
+++...+...|.+
T Consensus 234 ~~~~~~~~~~~~~ 246 (253)
T TIGR02323 234 DQVLDDPQHPYTQ 246 (253)
T ss_pred HHHhcCCCCHHHH
Confidence 9997653344443
No 246
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-41 Score=337.38 Aligned_cols=171 Identities=56% Similarity=0.886 Sum_probs=162.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++. ..++++|+||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|.++..++...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
+||||||++||+.+...+.+.|+++.+++|+|++||++..++.||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-41 Score=340.29 Aligned_cols=172 Identities=46% Similarity=0.693 Sum_probs=160.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC--HHHHhcc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~--~~~lr~~ 459 (876)
|+++|++++|+. .++++|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|.++.+++ ...++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 35899999999999999999999999999999999999999999999999998876 6778899
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
++|++|+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999885 5999999764 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
|+++||||||++||+.+...+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988764 6899999999999984 99999999985
No 248
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.9e-41 Score=344.27 Aligned_cols=183 Identities=30% Similarity=0.514 Sum_probs=163.1
Q ss_pred cEEEEeEEEECCCC---CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCeeCCCCCHHH
Q 002817 381 HIEFKDVSFCYPSR---PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~---~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~--~p~~G~I~idG~di~~~~~~~ 455 (876)
.|+++||+|+|+.. .+.++|+|+||++++||.++|+||+|||||||+++|.|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999742 0246999999999999999999999999999999999999 9999999999998875 37
Q ss_pred HhcceEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 456 lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
+|+.++|++|++.+|. .|++||+.++.. .. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---------------~~-------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK---------------LR-------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH---------------hc-------------------cCCHHHHHHHHHHHH
Confidence 7889999999999886 599999976421 00 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCch-hhh-hcCEEEEEeCCeEEEec
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIR-NADVIAVVQGRKIVKTG 600 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls-~i~-~aD~Iivl~~G~Ive~G 600 (876)
++++|+++||||||++||..+.+.+.+.|+++. +++|+|++||+++ .+. .||+|++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4899999999997 454 59999999999998765
No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-41 Score=348.69 Aligned_cols=204 Identities=31% Similarity=0.451 Sum_probs=170.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC----HHHHhc
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWLRQ 458 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~----~~~lr~ 458 (876)
.+ |++++|++. .+ |+||+|++ |+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+ ...+|+
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 899999742 34 99999999 999999999999999999999999999999999999986532 345788
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
.++||+|++.+|. .|++||+.++......++. ...+.++++.+ |++........+||||||||++||||+++
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999985 5999999886432221111 11223334443 45555667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEec
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~G 600 (876)
+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+++++|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999988743 789999999999986 49999999999999876
No 250
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4e-41 Score=340.84 Aligned_cols=172 Identities=24% Similarity=0.455 Sum_probs=158.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
-|+++|++++| +|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.+||.++..++. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999998 7999999999999999999999999999999999999999999999999998874 467889
Q ss_pred eEEEeccC----CCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 460 IGLVNQEP----ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 460 i~~V~Q~~----~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
++|++|++ ..++.|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3456799999987531 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeE
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~I 596 (876)
+++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998874 47999999999999877 999999999975
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-41 Score=343.14 Aligned_cols=182 Identities=26% Similarity=0.466 Sum_probs=162.1
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCeeCCCCCHHHHh
Q 002817 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWLR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~--~p~~G~I~idG~di~~~~~~~lr 457 (876)
.|+++|++|.|++.. +.++|+|+||++++||+++|+||||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 589999999997421 246999999999999999999999999999999999986 489999999999885 5778
Q ss_pred cceEEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
++++|++|++.+|.. |++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 899999999988875 99999986420 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh--hhhcCEEEEEeC-CeEEEec
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQG-RKIVKTG 600 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~-G~Ive~G 600 (876)
++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998865 47999999999984 467999999999 9999876
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=7.1e-41 Score=333.48 Aligned_cols=164 Identities=32% Similarity=0.516 Sum_probs=152.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++. .++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999632 45899999999999999999999999999999999999999999999983 5799
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++|++.+++.|++||+.++ +...||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999874 3478999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
+||||||++||.++.+.+.+.|+++ ++|+|++||+++....||+|++|++|-
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999876 699999999999888899999999864
No 253
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9.1e-41 Score=349.77 Aligned_cols=205 Identities=27% Similarity=0.440 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++++||+++|+. .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999973 36899999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEeccCCCcc-ccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|++|++.+|. .|++||+.++.. ...++++.++++..++.+. ......+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT-----------GKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHH-----------HhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 699999986531 2234555555555444332 2233468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhH
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 604 (876)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|++++.|+.++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999985 599999999999999998765
No 254
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=9.9e-41 Score=355.46 Aligned_cols=216 Identities=23% Similarity=0.352 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHHHHh-c
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLR-Q 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~~lr-~ 458 (876)
|+++|++++|++ .++|+|+||+|++|+++||+||+|||||||+++|.|+ ++|++|+|.+||.++.+++....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 3589999999999999999999999999999999999 479999999999999888877665 5
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCCCC---------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~~~---------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
.++|++|++.++.. |..+|+.+..+. ....+..+... ...+ ...+|+++.+... ..+||||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~-~~~l~~~~~~~~~--~~~LS~G~~qr 153 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLME--EKIA-LLKMPEDLLTRSV--NVGFSGGEKKR 153 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHH--HHHH-HcCCChhhcccCC--CCCCCHHHHHH
Confidence 79999999987764 555554322110 01111111111 1111 1135655544322 13799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhhh--cCEEEEEeCCeEEEecChhHH
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. +|+|++|++|++++.|++++.
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999987754 7899999999999987 899999999999999998854
No 255
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.6e-41 Score=361.38 Aligned_cols=214 Identities=32% Similarity=0.525 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++.+|+. +..+|+||||+|++|+.+|++||+||||||++++|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999988766 78899999
Q ss_pred EEEeccCCCccc-cHHHHHHcCC-----C-CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGK-----D-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~-----~-~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|||||+|.++.. |++||+.|-. + +...+++.+.++..++.+. . ..+-.+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~---------~--~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK---------A--NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh---------h--CcchhhcCHHHHHHHHHHH
Confidence 999999998854 9999998743 2 1234566666666654321 1 3445689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV-G-RTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~-~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||+.+|++||||||||+||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998765 4 799999999999988 999999999999999999997653
No 256
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=358.06 Aligned_cols=210 Identities=26% Similarity=0.426 Sum_probs=172.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 5899999999963 2469999999999999999999999999999999999999999999999998752 1223469
Q ss_pred EEEeccCCC---ccccHHHHHHcCCC---------CC-CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 461 GLVNQEPAL---FATTIRENILYGKD---------DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 461 ~~V~Q~~~L---f~~TIreNI~~g~~---------~~-~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
+|++|++.+ +..+++||+.++.. .. ..+++.++++..++.++ .++ ...+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~----~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-------RHR----QIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH-------hcC----CcccCCHHHHH
Confidence 999999865 46689999976521 01 12234444444444332 233 34579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
|++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 4789999999999875 49999777 8999999999998
Q ss_pred hc
Q 002817 606 IS 607 (876)
Q Consensus 606 ~~ 607 (876)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 257
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-40 Score=392.84 Aligned_cols=219 Identities=24% Similarity=0.374 Sum_probs=183.4
Q ss_pred ccEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCeeCCC
Q 002817 380 GHIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKG 450 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~---~G~I~idG~di~~ 450 (876)
.+++|.++. +++.. .++++|+|+|+++++||.+||+||||||||||+++|.|..+|. +|+|.+||.++.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~- 93 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID- 93 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-
Confidence 356777776 55432 2467999999999999999999999999999999999999885 899999999875
Q ss_pred CCHHHHhcceEEEeccCCCcc-ccHHHHHHcCC----C-CCCHHHHHHHHHHHhhhhhHh--cCchhhhhhhcCC--CCC
Q 002817 451 LDLKWLRQQIGLVNQEPALFA-TTIRENILYGK----D-DATMEEITRAAKLSEAMSFIS--NLPERFETQVGER--GIQ 520 (876)
Q Consensus 451 ~~~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~----~-~~~~~~v~~a~~~a~~~~~i~--~lp~G~~T~vGe~--G~~ 520 (876)
...+|+.+|||+|++++++ .||+|||.|+. | +.+.++.. . .+++.++ .|++..||.||+. +..
T Consensus 94 --~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~--~---~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR--E---RVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred --HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHH--H---HHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 4678999999999999995 59999999874 2 12222221 1 1222233 3567889999985 589
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCch-h-hhhcCEEEEEeCCeEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-T-IRNADVIAVVQGRKIV 597 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls-~-i~~aD~Iivl~~G~Iv 597 (876)
||||||||++|||||+++|+||+||||||+||+++...+.+.|+++. +|+|+|+++|+++ . .+.+|+|++|++|+++
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 99999999999999999999999999999999999999999998875 4899999999996 3 5779999999999999
Q ss_pred EecChhHHhc
Q 002817 598 KTGSHEELIS 607 (876)
Q Consensus 598 e~Gt~~eL~~ 607 (876)
++|+++|+.+
T Consensus 247 ~~G~~~~~~~ 256 (617)
T TIGR00955 247 YLGSPDQAVP 256 (617)
T ss_pred EECCHHHHHH
Confidence 9999999853
No 258
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.6e-40 Score=352.99 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=176.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
-|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+ ++|++|+|.++|.++.+++.+..++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999973 3599999999999999999999999999999999998 6899999999999999888776665
Q ss_pred -ceEEEeccCCCccc-cHHHHHHcCCC---------CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCC-CCC
Q 002817 459 -QIGLVNQEPALFAT-TIRENILYGKD---------DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGI-QLS 522 (876)
Q Consensus 459 -~i~~V~Q~~~Lf~~-TIreNI~~g~~---------~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~-~LS 522 (876)
.++|++|++.+|.+ |+++|+.++.. +.+. +++.++++..+ +++ +....... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~---~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG-------MDP---SFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcC-------Cch---hhhccccccCCC
Confidence 58999999999875 89999976521 1111 11222222222 221 22333333 599
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh--cCEEEEEeCCeEEEe
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKT 599 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~ 599 (876)
||||||++||||++++|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q 002817 600 GSHEEL 605 (876)
Q Consensus 600 Gt~~eL 605 (876)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999843
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.6e-40 Score=339.99 Aligned_cols=185 Identities=30% Similarity=0.450 Sum_probs=163.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHHHH-hc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-RQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~~l-r~ 458 (876)
++++|++++|++ .++|+|+||++++||.++|+||+|||||||+++|.|+ ++|++|+|.+||+++.+.+.... |+
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999973 3699999999999999999999999999999999999 58999999999999999887654 56
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+++||+|+|.+|++ |+++|+ .. ...+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999999876 555554 00 124799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh--hcCEEEEEeCCeEEEecChhHHh
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR--NADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~--~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+|+|+||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.| ..|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999998875 4789999999999998 69999999999999999 45554
No 260
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-40 Score=327.92 Aligned_cols=220 Identities=30% Similarity=0.479 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~ 459 (876)
-++++|++-.|.. ..+|+++||++++||+++++||+|+||||+++.|+|+.+|.+|+|.++|.||...+++. .|.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3689999999974 46999999999999999999999999999999999999999999999999999999865 5778
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|+||||.-.+|.. ||+||+.+|......++-.+ ...++..+-+|. +...-..+|.+|||||+|-+||||||..+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999965 99999999852111101100 001122334563 56667888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhh-hhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|++|+|||||.+|-|.--+.|.+.|+++.+ +.|+++|-++.... +-|||-+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999998874 56999999999975 55999999999999999999999875
No 261
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.4e-40 Score=348.06 Aligned_cols=207 Identities=31% Similarity=0.458 Sum_probs=169.4
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC----CccEEEECCeeCCCCCHHHHhcceEEEeccCC-Ccc--
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA-LFA-- 471 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p----~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~-Lf~-- 471 (876)
+|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.++|.++... +..++.|+||+|++. .|+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999998754 333468999999995 454
Q ss_pred ccHHHHHHcCCC--CC-C---HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 002817 472 TTIRENILYGKD--DA-T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545 (876)
Q Consensus 472 ~TIreNI~~g~~--~~-~---~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLD 545 (876)
.|+.||+.+... .. . .+++.++++..+ ++++ ++.......+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVG-------LPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcC-------CCch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 599999865321 01 1 122333333333 2322 24456677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 546 EATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 546 E~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+.+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999988753 789999999999986 49999999999999999999998654444443
No 262
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.8e-40 Score=349.43 Aligned_cols=210 Identities=24% Similarity=0.429 Sum_probs=174.3
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+++|+++. .+|+|+||+|++||+++|+||+|||||||+++|.|++++ +|+|.+||.++.+.+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 56777774 169999999999999999999999999999999999965 9999999999999888888999999
Q ss_pred EeccCC-CccccHHHHHHcCCCC-CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc---
Q 002817 463 VNQEPA-LFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK--- 537 (876)
Q Consensus 463 V~Q~~~-Lf~~TIreNI~~g~~~-~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~--- 537 (876)
++|++. .++.|++||+.++.+. .+.++.. ...++.++.+ |++.........||||||||++||||++.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 999985 5578999999987532 1111111 1112223332 33334455677999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhc
Q 002817 538 ----NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 538 ----~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 5799999999999764 599999999999999999999864
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2e-40 Score=343.07 Aligned_cols=194 Identities=31% Similarity=0.493 Sum_probs=162.6
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH----HHHhcc
Q 002817 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWLRQQ 459 (876)
Q Consensus 384 ~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~----~~lr~~ 459 (876)
++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++..++. ...|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999973 359999999999999999999999999999999999999999999999999765542 346789
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCCC--CC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKDD--AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~~--~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
++||+|++.+|. .|++||+.++... .. .+++.++++..++. ........+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-----------LKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-----------hhhcCChhhCCHHHHHHHHHH
Confidence 999999999997 6999999885321 11 22333444433332 223444578999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 479999999999988889999875
No 264
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.9e-40 Score=347.61 Aligned_cols=208 Identities=25% Similarity=0.431 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3599999999999999999999999999999999999999999999987 2469
Q ss_pred EEEeccCCCcc---ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPALFA---TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~Lf~---~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+|++|++.++. .|+++|+.+. +..+++++.++++..++.+++.. ....||||||||++||||+++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhc
Confidence 99999998765 4899998764 33456677777777776554332 346899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCCchHH
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~ 614 (876)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++ +|++.|+++|+.+ .+.|.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHH
Confidence 9999999999999999999999999988753 7899999999999855 999999965 7999999999874 35555
Q ss_pred HHH
Q 002817 615 ALV 617 (876)
Q Consensus 615 ~l~ 617 (876)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 555
No 265
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.8e-40 Score=368.76 Aligned_cols=228 Identities=32% Similarity=0.529 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCC--------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCee--CCC
Q 002817 381 HIEFKDVSFCYPSR--------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IKG 450 (876)
Q Consensus 381 ~I~~~~vsf~y~~~--------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~d--i~~ 450 (876)
-++++|++..|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999742 13468999999999999999999999999999999999999999999999987 333
Q ss_pred CCHHHHhcceEEEeccCCCc---cccHHHHHHcCC---CCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 451 LDLKWLRQQIGLVNQEPALF---ATTIRENILYGK---DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 451 ~~~~~lr~~i~~V~Q~~~Lf---~~TIreNI~~g~---~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
-+...+|+++-+|+|||+=. ..||+++|.--- .... .+.|.+..++.+ ||.. ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~Vg-------L~~~---~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG-------LPPE---FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcC-------CCHH---HHhcCchh
Confidence 33556888999999999742 469999996432 1111 112333333333 3321 34456689
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
||||||||+||||||..+|+++++||||||||+-+.+.|.+.|.++.+ |-|.|+|||+++.+++ ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999987754 6899999999999988 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHHH
Q 002817 598 KTGSHEELISNPNSAYAALVQ 618 (876)
Q Consensus 598 e~Gt~~eL~~~~~g~y~~l~~ 618 (876)
|.|+.+++.+++...|.+...
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999987777776553
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-40 Score=390.62 Aligned_cols=225 Identities=28% Similarity=0.430 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCC--------CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC
Q 002817 381 HIEFKDVSFCYPSRP--------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~--------~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~ 452 (876)
-++++|+++.|+.+. ...+|+|+||+|++||++|||||||||||||+++|.|+.+|++|+|.++|.++..++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 246899999999999999999999999999999999999999999999999998876
Q ss_pred HH---HHhcceEEEeccCC--Ccc-ccHHHHHHcCC--CCC-CH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCC
Q 002817 453 LK---WLRQQIGLVNQEPA--LFA-TTIRENILYGK--DDA-TM----EEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (876)
Q Consensus 453 ~~---~lr~~i~~V~Q~~~--Lf~-~TIreNI~~g~--~~~-~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~ 519 (876)
.. .+|++|+||+|+|. ++. .||+||+.++. ... .. +++.+.++..++ +. ........
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL-------~~---~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL-------LP---EHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC-------CH---HHhhCCcc
Confidence 43 46789999999984 664 59999997642 111 11 222333333222 11 12233456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeE
Q 002817 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~I 596 (876)
+||||||||++|||||+.+|++||||||||+||..+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988743 7899999999999876 999999999999
Q ss_pred EEecChhHHhcCCCchHHH
Q 002817 597 VKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 597 ve~Gt~~eL~~~~~g~y~~ 615 (876)
++.|+.+++...+...|.+
T Consensus 543 v~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEecCHHHHhcCCCCHHHH
Confidence 9999999998764555654
No 267
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.5e-40 Score=333.35 Aligned_cols=177 Identities=38% Similarity=0.595 Sum_probs=158.6
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+++|++|+|+. .++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 359999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 002817 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (876)
Q Consensus 463 V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~Il 542 (876)
++| +++..++.+++ ...+.+||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 44444443332 2356789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhh-hhcCEEEEEeCCeEEEec
Q 002817 543 LLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 543 lLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~G 600 (876)
||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988755 78999999999998 559999999999998764
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=311.75 Aligned_cols=192 Identities=32% Similarity=0.544 Sum_probs=167.1
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHH
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIr 475 (876)
+.++|+|+||++.+||.+||.||||||||||++.++-+.+|++|.++..|.|+++++++.+|++|+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCC----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 002817 476 ENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551 (876)
Q Consensus 476 eNI~~g~----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaL 551 (876)
||+-|-- ...+.+...+- +.+| .+| ++.+..+-.+||||+||||||+|-|---|+||||||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~l-----lar~--~l~---~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDL-----LARF--ALP---DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHH-----HHHc--CCc---hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9998863 11111111111 1121 233 45566778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCeEEEEcCCchh-hhhcCEEEEEeCCeEE
Q 002817 552 DAESENSVQEALDRVM--VGRTTVVVAHRLST-IRNADVIAVVQGRKIV 597 (876)
Q Consensus 552 D~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~Iv 597 (876)
|..+.+.|.+.|.++. ++..++-|||.-.. +++||+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998765 67899999999987 9999999999998764
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-39 Score=323.97 Aligned_cols=159 Identities=31% Similarity=0.561 Sum_probs=148.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~i 460 (876)
|+++|++++|+. .++++|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+. +..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 578999999974 359999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred EEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 461 ~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEE
Q 002817 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 598 (876)
++||||||++||.++.+.+.+.|+++. +++|+|++||++..+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 48899999999998765 99999999999975
No 270
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-40 Score=319.36 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
+++++++.+|++ ...+++|+||+++.||.++|.||+|+||||+++.|..++.|++|+|.+||.|+.. ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678899999975 3458999999999999999999999999999999999999999999999999876 4577899999
Q ss_pred EEeccCCCcc-ccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+++-+.-|+. -|.||||.|.. .+....++ .++.+.+.+-+ .|-+=.|+.+| ++|-|+|||++|||||++|
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~--kari~~l~k~l-~l~~~~~rRv~----~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEI--KARIAELSKRL-QLLEYLDRRVG----EFSTGMKQKVAIARALVHD 151 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHh-ChHHHHHHHHh----hhchhhHHHHHHHHHHhcC
Confidence 9998877875 59999998753 12222222 22333332211 12233455555 6999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|+|++||||||+||..+.+.+++-|.++.. ||++|.-||-++.++ -||+++++.+|+++..|+.+++.++
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999988765 999999999999999 5999999999999999999998765
No 271
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.6e-39 Score=334.59 Aligned_cols=195 Identities=23% Similarity=0.366 Sum_probs=167.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987654 56889999
Q ss_pred EEeccCCCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 462 LVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 462 ~V~Q~~~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
|++|++.++ +.|++||+.+..+...++++.++++..++.++. + ....+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-------D----RPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-------c----CchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999876 689999999876544566676776666654332 2 2346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh-hhhcCEEEEE
Q 002817 541 ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-IRNADVIAVV 591 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~-i~~aD~Iivl 591 (876)
++||||||++||+.+.+.+.+.|++.. +++|+|+|||+... ...+|+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 47999999998665 4568888876
No 272
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-39 Score=380.43 Aligned_cols=213 Identities=28% Similarity=0.458 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHh-cc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr-~~ 459 (876)
-|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999888776655 57
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCCC--CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~~--~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
++||+|++.+|.. |++||+.++.... ..+++.++++..++ ++ ....+..+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-------~~----~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC-------QL----DLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC-------Cc----cccCChhhCCHHHHHHHHHHHHHH
Confidence 9999999988864 9999999975321 12233333333332 22 223345689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998764 47899999999998865 99999999999999999998764
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=382.35 Aligned_cols=216 Identities=25% Similarity=0.466 Sum_probs=179.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCeeCCCCCHHH-Hh
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p--~~G~I~idG~di~~~~~~~-lr 457 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3699999999999999999999999999999999999996 8999999999998877654 56
Q ss_pred cceEEEeccCCCcc-ccHHHHHHcCCCC-----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 458 QQIGLVNQEPALFA-TTIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~-~TIreNI~~g~~~-----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
++++||+|++.+|. .|++|||.++... .+.++..+. +.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998886 4999999987421 122222211 11222222 22222334456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
|||++.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999998864 57899999999999865 9999999999999999988874
No 274
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.8e-39 Score=341.13 Aligned_cols=195 Identities=32% Similarity=0.442 Sum_probs=160.3
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc-ccHHHHH
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI 478 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~-~TIreNI 478 (876)
|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+.+ .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998775542 489999999987 6999999
Q ss_pred HcCC----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 002817 479 LYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (876)
Q Consensus 479 ~~g~----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~ 554 (876)
.++. +..+.++..+. +.+.++.+ |++........+||||||||++||||++++|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAI-----VEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHHH-----HHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8752 22232222111 11122221 2223334455789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 555 SENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 555 te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999998864 37899999999998765 9999999999999999876654
No 275
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.2e-39 Score=341.93 Aligned_cols=196 Identities=27% Similarity=0.432 Sum_probs=161.1
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEe-ccCCCc-cccH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN-QEPALF-ATTI 474 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~-Q~~~Lf-~~TI 474 (876)
.++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|.++.+. ...+|++++|++ |++.+| +.|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4689999999999999999999999999999999999999999999999987653 356788999997 667776 5799
Q ss_pred HHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 002817 475 RENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (876)
Q Consensus 475 reNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD 552 (876)
+||+.++.. ..+.++..+.+. .+.+.+ .+++..++.+ ..||||||||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~--~~l~~~-gl~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLD--ELSELL-DLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CChhHhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999977531 223333332221 121211 3444445544 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 553 AESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 553 ~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999988743 7899999999998865 9999999999998875
No 276
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-39 Score=333.97 Aligned_cols=194 Identities=27% Similarity=0.426 Sum_probs=162.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 359999999999999999999999999999999999999999999999999875 4467889999
Q ss_pred EEeccCCCc-cccHHHHHHcCCC-CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 462 LVNQEPALF-ATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 462 ~V~Q~~~Lf-~~TIreNI~~g~~-~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|++|++.++ ..|++||+.++.. ....+++.++++..+ +++..+.. ..+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~----~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFS-------LEHLIDYP----CGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcC-------CchhhhCC----hhhcCHHHHHHHHHHHHHhcCC
Confidence 999999986 5799999998741 112223333333322 23333333 3479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEE
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 590 (876)
++|||||||++||+.+...+.+.|+++. +++|+|++||+...+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999998863 57899999999999999997554
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=381.39 Aligned_cols=217 Identities=24% Similarity=0.402 Sum_probs=178.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~ 459 (876)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 35899999999999999999999999999999999999999999999999998887654 4567
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCC---------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~---------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
|+||+|++.+|.. |++||+.++... .+.++..+. +.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-----AAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988865 999999886410 011222111 11112221 221122334468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998864 47999999999999875 99999999999999999988753
No 278
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-39 Score=335.42 Aligned_cols=228 Identities=31% Similarity=0.529 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-C----CccEEEECCeeCCCCCHHH
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-P----LSGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-p----~~G~I~idG~di~~~~~~~ 455 (876)
++++|++..|+... ...+++||||++++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57889988886432 3468999999999999999999999999999999999998 4 6799999999999999886
Q ss_pred Hh----cceEEEeccCCC-ccc--cHH----HHHHcCCCC-CC---HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 456 LR----QQIGLVNQEPAL-FAT--TIR----ENILYGKDD-AT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 456 lr----~~i~~V~Q~~~L-f~~--TIr----eNI~~g~~~-~~---~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
+| +.||+|+|||.- ||- ||. |-+...... .. .+++.+.++..++ |+ -+.....-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi-------~~-~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGI-------PD-PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCC-------CC-HHHHHhhCCcc
Confidence 54 379999999852 442 443 433332111 11 2334444444443 32 12234455689
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
||||||||+.||-|+..+|++||-||||+|||..++++|.+.|+++. .|.|+|+|||++..+.. ||+|+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998876 48999999999998766 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 002817 598 KTGSHEELISNPNSAYAALV 617 (876)
Q Consensus 598 e~Gt~~eL~~~~~g~y~~l~ 617 (876)
|.|+-+|+.+++.-.|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999998776776644
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=378.47 Aligned_cols=216 Identities=25% Similarity=0.415 Sum_probs=177.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~ 459 (876)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 46899999999999999999999999999999999999999999999999997766544 4678
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCCC------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~~------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
++||+|++.+|. -|++||+.++... .+.++..+. +.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998886 4999999987421 112222111 11112222 121112233458999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999998764 47899999999998865 9999999999999999988764
No 280
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-39 Score=313.50 Aligned_cols=213 Identities=25% Similarity=0.458 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+.+|+|++-.. +.+|+++||+++|||.+||+||+|+|||||+++|.|++.|++|++.++|.++.++....+-++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 678999998754 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC-ccccHHHHHHcCC-CC---CC--HHH--HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 462 LVNQEPAL-FATTIRENILYGK-DD---AT--MEE--ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 462 ~V~Q~~~L-f~~TIreNI~~g~-~~---~~--~~~--v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+.||+..| |.-|++|-+.+|+ |. .. +++ ..+|...+++..|- |..-..||||+|||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la-----------~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA-----------GRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh-----------ccchhhcCchHHHHHHHH
Confidence 99999987 9999999999997 32 11 333 34444444443331 223458999999999999
Q ss_pred HHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh-hhhcCEEEEEeCCeEEEecChhH
Q 002817 533 RAIVK------NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 533 RAl~~------~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt~~e 604 (876)
|.|.+ ++++|+|||||||||...++.+.+..+++. .+..|+.|=|+|+. ...||||++|.+|||+..|+++|
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 445899999999999999999998888864 57899999999996 56799999999999999999999
Q ss_pred HhcC
Q 002817 605 LISN 608 (876)
Q Consensus 605 L~~~ 608 (876)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 9864
No 281
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-39 Score=332.05 Aligned_cols=195 Identities=20% Similarity=0.325 Sum_probs=166.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. .++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 35899999999999999999999999999999999999999999999999987654 45778899
Q ss_pred EEeccCCCcc-ccHHHHHHcCCCC---CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 462 LVNQEPALFA-TTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~~---~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|++|++.++. .|++||+.++.+. ...+++.++++..++.++. ......||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998876 6999999886421 2345566666665554332 22356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEE
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVV 591 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl 591 (876)
+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998764 47899999999999965 5677776
No 282
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.5e-39 Score=381.97 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=172.7
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC--ccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc-cc
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL--SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TT 473 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~--~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~-~T 473 (876)
+.+|+|+|+++++||++||+||||||||||+++|.|+.+|+ +|+|.+||+++. ...++++|||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999985 999999999874 245678999999999995 59
Q ss_pred HHHHHHcCC----C-CCCHHHHHHHHHHHhhhhhHh--cCchhhhhhhcCC-CCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 002817 474 IRENILYGK----D-DATMEEITRAAKLSEAMSFIS--NLPERFETQVGER-GIQLSGGQKQRIAISRAIVKNPSILLLD 545 (876)
Q Consensus 474 IreNI~~g~----~-~~~~~~v~~a~~~a~~~~~i~--~lp~G~~T~vGe~-G~~LSGGQkQRIaiARAl~~~p~IllLD 545 (876)
++||+.|+. + +.+.++..+.+ ++.++ .|++..||.||++ +..||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999999853 2 23343332222 12222 3566679999865 6789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh--hhhcCEEEEEeCCeEEEecChhHHhc
Q 002817 546 EATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 546 E~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
||||+||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998875 58999999999984 46699999999999999999999863
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=386.23 Aligned_cols=225 Identities=26% Similarity=0.420 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC----------
Q 002817 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK---------- 449 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~---------- 449 (876)
-|+++|++++|+... +.++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996321 246999999999999999999999999999999999999999999999998552
Q ss_pred CCCHH---HHh-cceEEEeccC--CCcc-ccHHHHHHcCCC---CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhc
Q 002817 450 GLDLK---WLR-QQIGLVNQEP--ALFA-TTIRENILYGKD---DATMEE----ITRAAKLSEAMSFISNLPERFETQVG 515 (876)
Q Consensus 450 ~~~~~---~lr-~~i~~V~Q~~--~Lf~-~TIreNI~~g~~---~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vG 515 (876)
+.+.. .+| ++||||+|+| .++. .||+|||.++.. ..+.++ +.++++..+ ||+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-------L~~~-~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVR-------IPEA-QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCC-------CCCh-hhHHh
Confidence 22322 344 5799999998 5665 599999987531 122222 222332222 2211 12344
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEcCCchhhhh-cCEEEEEe
Q 002817 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQ 592 (876)
Q Consensus 516 e~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~-~~T~I~ItHrls~i~~-aD~Iivl~ 592 (876)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|+|||++..+.. ||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5667899999999999999999999999999999999999999999999875 3 7999999999999865 99999999
Q ss_pred CCeEEEecChhHHhcCCCchH
Q 002817 593 GRKIVKTGSHEELISNPNSAY 613 (876)
Q Consensus 593 ~G~Ive~Gt~~eL~~~~~g~y 613 (876)
+|+|++.|+++++...+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999976533334
No 284
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-39 Score=376.99 Aligned_cols=213 Identities=25% Similarity=0.397 Sum_probs=176.8
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcceEE
Q 002817 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGL 462 (876)
Q Consensus 384 ~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~i~~ 462 (876)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 358999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EeccCCCcc-ccHHHHHHcCCC---C--CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 463 VNQEPALFA-TTIRENILYGKD---D--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 463 V~Q~~~Lf~-~TIreNI~~g~~---~--~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
|+|++.+|. .|++||+.++.. . .+.++..+. +.+.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998765 599999998742 1 122222211 12223332 3333344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998864 57899999999998865 9999999999999999988863
No 285
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=375.69 Aligned_cols=212 Identities=27% Similarity=0.435 Sum_probs=174.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999976554 467889
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCC-C----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKD-D----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~-~----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|+||+|++.+|.. |++||+.++.. . ...++..+. +.++++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE-----AREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHH-----HHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999998875 99999998741 1 122222111 11223222 2222223445689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999998764 47899999999998865 999999999999987653
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.4e-39 Score=377.56 Aligned_cols=220 Identities=25% Similarity=0.458 Sum_probs=178.9
Q ss_pred cEEEEeEEEECCCC--------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC
Q 002817 381 HIEFKDVSFCYPSR--------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (876)
Q Consensus 381 ~I~~~~vsf~y~~~--------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~ 452 (876)
-|+++|++++|+.. .+.++|+|+||+|++||++||+||||||||||+++|.|+++ ++|+|.++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999621 12468999999999999999999999999999999999994 8999999999998776
Q ss_pred HHH---HhcceEEEeccC--CCcc-ccHHHHHHcCCC----CCCHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCC
Q 002817 453 LKW---LRQQIGLVNQEP--ALFA-TTIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQL 521 (876)
Q Consensus 453 ~~~---lr~~i~~V~Q~~--~Lf~-~TIreNI~~g~~----~~~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~L 521 (876)
... +|++|+||+|++ .+|. .|++||+.++.. .....+..+ .+.+.++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ-----QVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH-----HHHHHHHHc--CCCHHHHhcCCccC
Confidence 543 578899999998 3665 599999987521 111111111 111222222 222 1234456789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEE
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 598 (876)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 7899999999998865 99999999999999
Q ss_pred ecChhHHhcC
Q 002817 599 TGSHEELISN 608 (876)
Q Consensus 599 ~Gt~~eL~~~ 608 (876)
.|+.++++..
T Consensus 507 ~~~~~~~~~~ 516 (529)
T PRK15134 507 QGDCERVFAA 516 (529)
T ss_pred EcCHHHHhcC
Confidence 9999999865
No 287
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.9e-39 Score=373.78 Aligned_cols=211 Identities=24% Similarity=0.300 Sum_probs=180.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 889999999974 34899999999999999999999999999999999999999999999999888778778888999
Q ss_pred EEeccCCC---------ccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 462 LVNQEPAL---------FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 462 ~V~Q~~~L---------f~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
|++|++.+ +..|++||+.++. ...+++.++++..++.+ .......+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITA-----------LLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHh-----------hhhCCcccCCHHHHHHHHHH
Confidence 99998753 2469999987652 12334444444443322 22344568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.+ ||+|++|++|++++.|+.+++...
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999999998864 47899999999998866 999999999999999999998754
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-38 Score=329.58 Aligned_cols=194 Identities=26% Similarity=0.343 Sum_probs=165.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|+++.|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. .. .|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999963 358999999999999999999999999999999999999999999999998753 22 888999
Q ss_pred EEeccCCCc-cccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf-~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|++|++.++ +.|++||+.+... ...++++.++++..++.++.. ....+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999988765 6799999987532 233455666666666544321 22347999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||++..+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 457999999999999998 99988854
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=330.28 Aligned_cols=196 Identities=36% Similarity=0.535 Sum_probs=169.2
Q ss_pred cEEEEeEEEECCCCC------CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH
Q 002817 381 HIEFKDVSFCYPSRP------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~------~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~ 454 (876)
-++++|++..|+... ...+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378899999997432 136899999999999999999999999999999999999999999999999987776
Q ss_pred HHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhh-hHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS-FISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~-~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
.+...+++.+.++..++.+ +..+. ...|||||||||+|||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----------PhelSGGQrQRi~IAR 122 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRY-----------PHELSGGQRQRIGIAR 122 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----------CcccCchhhhhHHHHH
Confidence 2223456777777766544 33333 4689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||.-+|++++.||||||||.-.+++|.+.+.++. .+-|.+.|||+++.+++ ||+|.||..|+|+|.|+-+|+.+++.
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 9999999999999999999999999999987764 47899999999999998 99999999999999999999999877
Q ss_pred chHHHHH
Q 002817 611 SAYAALV 617 (876)
Q Consensus 611 g~y~~l~ 617 (876)
-.|.+..
T Consensus 203 HpYTk~L 209 (268)
T COG4608 203 HPYTKAL 209 (268)
T ss_pred CHHHHHH
Confidence 7776644
No 290
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=356.25 Aligned_cols=228 Identities=28% Similarity=0.487 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC----ccEEEECCeeCCCCCHHH
Q 002817 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL----SGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~-~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~----~G~I~idG~di~~~~~~~ 455 (876)
-++++|++..|..... ..+++||||+|.+||.+||||.|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 25899999999999999999999999999999999999988 899999999999999876
Q ss_pred Hh----cceEEEeccCC-Cccc--cHHHHHH----cCCCCC---CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 456 LR----QQIGLVNQEPA-LFAT--TIRENIL----YGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 456 lr----~~i~~V~Q~~~-Lf~~--TIreNI~----~g~~~~---~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
+| +.||||+|+|+ .+|- ||.+-|. ...+.. ..++..+..+..+ ||+-..- ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vg-------l~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVG-------LPDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcC-------CCChhhh--ccCCccc
Confidence 64 57999999986 5764 6655553 222111 1223333333333 4554433 4567899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEE
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 598 (876)
|||||||+.||+||..||++||+||||.|||+.++++|.+.|+++. .|.++|+|||++..+.+ ||+|+||++|+|+|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 58899999999999877 99999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 002817 599 TGSHEELISNPNSAYAALV 617 (876)
Q Consensus 599 ~Gt~~eL~~~~~g~y~~l~ 617 (876)
.|+.+++++++...|.+-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH
Confidence 9999999998766676543
No 291
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=9e-39 Score=328.34 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=161.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999964 35899999999999999999999999999999999999999999999999998765 46788999
Q ss_pred EEeccCCCcc-ccHHHHHHcCCCCC--CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPALFA-TTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~~~--~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|++|++.+|. .|++||+.++.+.. ..+++.++++..++.++. + ....+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-------D----LPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-------c----CChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 69999998764211 133466666666654433 2 23458999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhhcCEEE
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~aD~Ii 589 (876)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+.. |+.+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999999999999876 457899999999865443 5544
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-38 Score=373.72 Aligned_cols=220 Identities=27% Similarity=0.410 Sum_probs=178.9
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCCCHH
Q 002817 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~~~~ 454 (876)
-|+++|++++|+.. ...++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999997 799999999999887754
Q ss_pred H---Hh-cceEEEeccCC--Ccc-ccHHHHHHcCC---CCCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 455 W---LR-QQIGLVNQEPA--LFA-TTIRENILYGK---DDATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 455 ~---lr-~~i~~V~Q~~~--Lf~-~TIreNI~~g~---~~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
. +| ++||||+|+|. ++. .|++||+.++. ...+. +++.++++..++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 3 34 58999999985 443 59999987431 11122 233344443333110 0112345568
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37999999999998865 9999999999999
Q ss_pred EecChhHHhcC
Q 002817 598 KTGSHEELISN 608 (876)
Q Consensus 598 e~Gt~~eL~~~ 608 (876)
+.|+.+++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998764
No 293
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-38 Score=329.36 Aligned_cols=196 Identities=21% Similarity=0.296 Sum_probs=163.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++++|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 5899999999964 3589999999999999999999999999999999999999999999999998753 346689
Q ss_pred EEEeccCCCccc-cHHHHHHcCCC--CCC-HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 461 GLVNQEPALFAT-TIRENILYGKD--DAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~--~~~-~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
+|++|++.+|.. |++||+.++.. ... ++.+.++++.. .+++..++ ...+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~----~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-------GLAGYEDT----LVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-------CChhhccC----ChhhCCHHHHHHHHHHHHHh
Confidence 999999999876 99999987531 122 22222332222 23333343 34689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~ 593 (876)
++|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998753 57899999999998865 999999874
No 294
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=333.63 Aligned_cols=224 Identities=32% Similarity=0.484 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCC--------CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC
Q 002817 381 HIEFKDVSFCYPSRP--------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~--------~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~ 452 (876)
-++.+||...||-+. ...+.+++||+.++||+++|||+|||||||+-.+|+|+.+++ |+|.++|+||..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 578899998887321 234789999999999999999999999999999999999987 99999999999999
Q ss_pred HHH---HhcceEEEeccCCC-cc--ccHHHHHHcCC----CCC----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC
Q 002817 453 LKW---LRQQIGLVNQEPAL-FA--TTIRENILYGK----DDA----TMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (876)
Q Consensus 453 ~~~---lr~~i~~V~Q~~~L-f~--~TIreNI~~g~----~~~----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G 518 (876)
.+. +|+++-+|+|||+= +| .||.+-|.=|. |.. .++.+.+|++.++++.-. ...-.
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----------r~RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----------RNRYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----------hhcCC
Confidence 765 68999999999973 33 58888776663 333 355677777777664321 12335
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
..+|||||||||||||++-+|++++|||||||||-....+|.+.++++. .+-+-++|+|+|..++. ||+|+||.+|+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 6899999999999999999999999999999999999999999998764 47799999999999988 99999999999
Q ss_pred EEEecChhHHhcCCCchHHH
Q 002817 596 IVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 596 Ive~Gt~~eL~~~~~g~y~~ 615 (876)
|||+|+-+++.+++...|.+
T Consensus 505 iVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHH
Confidence 99999999999987777765
No 295
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-39 Score=321.34 Aligned_cols=217 Identities=29% Similarity=0.516 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH-hcce
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l-r~~i 460 (876)
++.+|++.+|.. -.+++|+||++++||.+||+||+||||||++|+|.|+|+|++|+|.++|.||..++++.. |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 568899999963 458999999999999999999999999999999999999999999999999999998765 6668
Q ss_pred EEEeccCCCccc-cHHHHHHcCCC------------CC--CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGKD------------DA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~------------~~--~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
+--+|.+-+|++ |+.||++.|.- .. .+++..+ +...+.+++ |++-.-.+...+||+||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v-----gL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV-----GLGELADRPAGNLSYGQ 154 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc-----CCchhhcchhhcCChhH
Confidence 999999999965 99999998731 11 1222221 122233332 44555556667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
+.|+-|||||..+|++|+||||.+++.+.-...+.+.|+++.+ +.|+++|-|+++.+.+ ||||+||+.|+++.+|++
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999988899999998874 4899999999999876 999999999999999999
Q ss_pred hHHhcC
Q 002817 603 EELISN 608 (876)
Q Consensus 603 ~eL~~~ 608 (876)
+|..++
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 999875
No 296
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=336.04 Aligned_cols=208 Identities=24% Similarity=0.347 Sum_probs=170.1
Q ss_pred cEEEEeEEEECCCC-----------------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 002817 381 HIEFKDVSFCYPSR-----------------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (876)
Q Consensus 381 ~I~~~~vsf~y~~~-----------------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i 443 (876)
.|+++||+..|... ...++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57777777666431 1346899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEeccCCCcc-ccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 444 DGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 444 dG~di~~~~~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
+|. +++++|++.+++ .|++||+.++. ...+.++..+.+.. +.++ + |++..+.....+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~--~l~~---~--~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPK--IIEF---S--ELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH---c--CCchhhcCCccc
Confidence 995 678899988764 69999998753 22344444332211 1111 1 222334456678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 598 (876)
||||||||++||||++++|+||||||||++||+.+.+.+.+.|.++. .++|+|++||++..+.. ||+|++|++|+|++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988764 48999999999999876 99999999999999
Q ss_pred ecChhHHhcC
Q 002817 599 TGSHEELISN 608 (876)
Q Consensus 599 ~Gt~~eL~~~ 608 (876)
.|+++++...
T Consensus 224 ~g~~~~~~~~ 233 (264)
T PRK13546 224 YGELDDVLPK 233 (264)
T ss_pred eCCHHHHHHH
Confidence 9999999876
No 297
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=378.89 Aligned_cols=219 Identities=32% Similarity=0.507 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH---
Q 002817 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL--- 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l--- 456 (876)
-|+++|++++|+.. ...++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.+||.++.+.+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 12468999999999999999999999999999999999999999999999999999987764
Q ss_pred -hcceEEEeccCCCcc-ccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 457 -RQQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 457 -r~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
|+.++|++|++.+|. .|+.||+.++.. ..+.++ ....+++.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 678999999999996 599999987531 111111 122333444444 555666667789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHh
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 589999999999999999999999999999999999886
No 298
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.9e-38 Score=331.86 Aligned_cols=187 Identities=24% Similarity=0.442 Sum_probs=158.5
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCC---ccccHHHHHHcC
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYG 481 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L---f~~TIreNI~~g 481 (876)
|+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++. ..|++++|++|+|.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 357789999999976 457999999876
Q ss_pred CC---------C-CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 002817 482 KD---------D-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551 (876)
Q Consensus 482 ~~---------~-~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaL 551 (876)
.. . ..++++.++++..++.++. .....+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 31 1 1223455566665553332 2334579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 552 DAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 552 D~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|+.+...+.+.|+++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998875 58899999999998865 9999999 7999999999998653
No 299
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.5e-38 Score=367.59 Aligned_cols=212 Identities=25% Similarity=0.437 Sum_probs=175.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCeeCCCCCHHH-Hhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p--~~G~I~idG~di~~~~~~~-lr~ 458 (876)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 3589999999999999999999999999999999999987 7999999999998877654 567
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCCCC------CCHHHHHHHHHHHhhhhhHhc--Cchhh-hhhhcCCCCCCCHHHHHH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISN--LPERF-ETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~~~------~~~~~v~~a~~~a~~~~~i~~--lp~G~-~T~vGe~G~~LSGGQkQR 528 (876)
+|+||+|++.+|.. |++||+.++... ...++..+. +.+.++. +++.. +.. ..+||||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~----~~~LSgG~~qr 149 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR-----AKNLLRELQLDADNVTRP----VGDYGGGQQQL 149 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHH-----HHHHHHHcCCCCCcccCc----hhhCCHHHHHH
Confidence 89999999988764 999999987421 122222211 1122222 22211 222 45799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999998764 47899999999999876 999999999999999987765
No 300
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3e-38 Score=331.09 Aligned_cols=200 Identities=29% Similarity=0.391 Sum_probs=160.5
Q ss_pred EEEEeEEEECCCC---C-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC--Ce--eCCCCCH
Q 002817 382 IEFKDVSFCYPSR---P-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD--GN--NIKGLDL 453 (876)
Q Consensus 382 I~~~~vsf~y~~~---~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~id--G~--di~~~~~ 453 (876)
|+++|++++|+.. . ..++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 2468999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-hcceEEEeccCCCcc-ccHHHHHHcCC--CCCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 454 KW---L-RQQIGLVNQEPALFA-TTIRENILYGK--DDATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 454 ~~---l-r~~i~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
.. + +++++||+|++.+|. .|++|||.++. .....++ +.++++..+ +++.+ ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~---~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLN-------IPERL---WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------Cchhh---hhCCcccCC
Confidence 43 3 467999999998876 59999998642 1122222 222222222 22222 123467899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEE
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVV 591 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl 591 (876)
||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||++..+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998874 4789999999999886 59999876
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-38 Score=372.20 Aligned_cols=220 Identities=28% Similarity=0.452 Sum_probs=176.1
Q ss_pred cEEEEeEEEECCC--CCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC-Cee---CCCCC--
Q 002817 381 HIEFKDVSFCYPS--RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD-GNN---IKGLD-- 452 (876)
Q Consensus 381 ~I~~~~vsf~y~~--~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~id-G~d---i~~~~-- 452 (876)
-|+++|++++|++ +.+.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 122469999999999999999999999999999999999999999999996 643 33333
Q ss_pred -HHHHhcceEEEeccCCCcc-ccHHHHHHcCCC-CCCH----HHHHHHHHHHhhhhhHhcCch-hhhhhhcCCCCCCCHH
Q 002817 453 -LKWLRQQIGLVNQEPALFA-TTIRENILYGKD-DATM----EEITRAAKLSEAMSFISNLPE-RFETQVGERGIQLSGG 524 (876)
Q Consensus 453 -~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~-~~~~----~~v~~a~~~a~~~~~i~~lp~-G~~T~vGe~G~~LSGG 524 (876)
...+|++|+||+|++.+|. .|++||+.++.. .... +++.++++..++ ++ ..+........+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGF-------DEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-------CCccchhhhhCChhhCCHH
Confidence 2356788999999998886 599999986421 1111 223333333222 11 0001233445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
||||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988743 7899999999999875 99999999999999999
Q ss_pred hhHHhc
Q 002817 602 HEELIS 607 (876)
Q Consensus 602 ~~eL~~ 607 (876)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 988764
No 302
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=369.76 Aligned_cols=219 Identities=21% Similarity=0.383 Sum_probs=177.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCeeCCCCCH-HHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-PLSGEILLDGNNIKGLDL-KWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-p~~G~I~idG~di~~~~~-~~lr~ 458 (876)
-|+++|+++.|+...+.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223468999999999999999999999999999999999999 599999999999876553 45678
Q ss_pred ceEEEeccC---CCc-cccHHHHHHcCCC-CC------CHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHHHH
Q 002817 459 QIGLVNQEP---ALF-ATTIRENILYGKD-DA------TMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQK 526 (876)
Q Consensus 459 ~i~~V~Q~~---~Lf-~~TIreNI~~g~~-~~------~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGGQk 526 (876)
.++||+|++ .+| +.|+.||+.++.. .. +.++. ...+.+.++.+ |+++ .......+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 365 4699999987631 10 11111 11223334443 2221 23445578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.+ ||++++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 58999999999998865 99999999999999998887
Q ss_pred Hh
Q 002817 605 LI 606 (876)
Q Consensus 605 L~ 606 (876)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=349.56 Aligned_cols=211 Identities=23% Similarity=0.322 Sum_probs=171.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.++++|++|+|+.+...++|+|+||+|++|+++||+||+|||||||+++|.|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999765445799999999999999999999999999999999999999999999999751
Q ss_pred EEEeccCCCcc-ccHHHHHHcCC--CCCCHHHHH----HHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGK--DDATMEEIT----RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~v~----~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
++.+.+.++. .|++|||.++. ...+.++.. ++++..++.+ ........||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~-----------~ld~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK-----------FIYQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh-----------HhhCCcccCCHHHHHHHHHHH
Confidence 2333444443 59999998743 223334333 2333333322 233456789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCCc
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~g 611 (876)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++... -.
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~-~~ 235 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH-YD 235 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh-HH
Confidence 9999999999999999999999999999998764 47899999999999866 999999999999999999999865 33
Q ss_pred hHHHH
Q 002817 612 AYAAL 616 (876)
Q Consensus 612 ~y~~l 616 (876)
.|.+.
T Consensus 236 ~~~~~ 240 (549)
T PRK13545 236 EFLKK 240 (549)
T ss_pred HHHHH
Confidence 44443
No 304
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.8e-38 Score=370.51 Aligned_cols=212 Identities=25% Similarity=0.496 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEEC---------------
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLD--------------- 444 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~--~p~~G~I~id--------------- 444 (876)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 35899999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHHhcceEEEecc-CCCcc-ccHHHHHHcCCC--CCCHHH----HHHHHHHHh
Q 002817 445 --------GNNIK-------GLD---LKWLRQQIGLVNQE-PALFA-TTIRENILYGKD--DATMEE----ITRAAKLSE 498 (876)
Q Consensus 445 --------G~di~-------~~~---~~~lr~~i~~V~Q~-~~Lf~-~TIreNI~~g~~--~~~~~~----v~~a~~~a~ 498 (876)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ..+.++ +.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23467889999998 57776 599999987531 122222 222333322
Q ss_pred hhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEc
Q 002817 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVA 576 (876)
Q Consensus 499 ~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~It 576 (876)
++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|+||
T Consensus 158 -----------l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 -----------LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred -----------ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 3223344567899999999999999999999999999999999999999999998874 378999999
Q ss_pred CCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 577 HRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 577 Hrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999865 99999999999999999988864
No 305
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.4e-38 Score=321.96 Aligned_cols=174 Identities=30% Similarity=0.510 Sum_probs=145.1
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC--CCHHHHhcceEEEeccC--CCccc
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQIGLVNQEP--ALFAT 472 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~--~~~~~lr~~i~~V~Q~~--~Lf~~ 472 (876)
..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. .+...+|+.++||+|+| .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 458999999999999999999999999999999999999999999999999852 23457788999999998 57889
Q ss_pred cHHHHHHcCCC--CCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 002817 473 TIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546 (876)
Q Consensus 473 TIreNI~~g~~--~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE 546 (876)
|++||+.++.. ..+.+ ++.++++..++.++ ...+..+||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGL-----------RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999988631 22222 33444444443332 233446899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh
Q 002817 547 ATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST 581 (876)
Q Consensus 547 ~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~ 581 (876)
||++||+.+.+.+.+.|+++. +++|+|+|||++..
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998874 47899999999864
No 306
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.9e-38 Score=322.01 Aligned_cols=189 Identities=21% Similarity=0.365 Sum_probs=158.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. ..++ ++||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 3345 599999999999999999999999999999999999999999999887643 45699
Q ss_pred EEeccCCC-ccccHHHHHHcCCCCC-CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 462 LVNQEPAL-FATTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 462 ~V~Q~~~L-f~~TIreNI~~g~~~~-~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|++|++.+ |+.|++|||.++.+.. ..+++.++++..++.+ ....++.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-----------LLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-----------hhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999754 7889999999865321 3344555555554433 234457799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhhcCEEE
Q 002817 540 SILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~aD~Ii 589 (876)
+++||||||++||+.+.+.+.+.|+.. .+++|+|++||+++.++.||-|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999998753 46899999999999999999763
No 307
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.8e-39 Score=309.11 Aligned_cols=222 Identities=26% Similarity=0.488 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH-HHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~-~lr~~ 459 (876)
.+..+|+..+|.. ++|.+++||++++||.|++.||+|+||||...++.|+.+|++|+|.+||.||+.++.. .-|--
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5788899999974 4699999999999999999999999999999999999999999999999999999986 45667
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
|||.||||.+|.+ ||+|||..--+ ..+.+...+-+...+.+.++.+ .+...-...|.+||||||.|+-|||||..|
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999976 99999986532 1121112222222222223332 344455678999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCch-hhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls-~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|+.+|||||++++||.+-..||+.++.+. +|--+++.-|+.. |+.-|||.+++.+|+|..+|+++|+.++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999998875 4666777778866 7888999999999999999999999975
No 308
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=322.05 Aligned_cols=419 Identities=17% Similarity=0.170 Sum_probs=283.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVT-LSIVPLIALAGGMYAYVTIGLIARVRKSYVKAG 241 (876)
Q Consensus 163 s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (876)
.|++.|++++-..+.+....++...+.++....-++-...+++.+. +..+.+-.++...+.+.+.+...+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999988777664444444333332222222222111122222 222222333444455555555555555555555
Q ss_pred HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccC
Q 002817 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVV----HKHISN 317 (876)
Q Consensus 242 ~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~lt 317 (876)
-.-.+...|-+.|..|+.++.+....++..++..+..++.-.++-....+.++.-++..++.....+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 5666788899999999999999888888888777776665444433333333333332221111000000 124567
Q ss_pred HHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccc-------------ccC-------cccCC
Q 002817 318 GGESFTTML----NVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMS-------------KAS-------SKTGR 373 (876)
Q Consensus 318 ~g~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~-------------~~~-------~~~~~ 373 (876)
+..++..+. .++.+...++.+......+.+-..-..||.++.+.-... ... .++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 777665432 122223334444444444444455566776665421100 000 00001
Q ss_pred CCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH
Q 002817 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453 (876)
Q Consensus 374 ~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~ 453 (876)
+..+.+..|+|++|+++=|++ ...+.+|+||+|+.|+.+-|.||||||||+|++.|.|+++..+|++.--...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 112234579999999999875 445678899999999999999999999999999999999999999986432110
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCC-------CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhc-CCCCCCCHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQVG-ERGIQLSGGQ 525 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~-------~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vG-e~G~~LSGGQ 525 (876)
+.+=||||.|+.=.||+||-+.|-. ..++++++.+-++.+++.+.++. .+|+|+++- |-...||+|+
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHH
Confidence 3489999999999999999999972 34789999999999999886554 578887765 6688999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
+||+|.||-+|.+|++-+|||+|||||.+.|..+-+.+++. |.|.|-|.||-+.-+.=|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999998877764 8999999999999999999999986
No 309
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=297.71 Aligned_cols=219 Identities=32% Similarity=0.532 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC--------
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-------- 452 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~-------- 452 (876)
.++.+|+..+|.+ ..+|+++||+.++|+.+.|+|.|||||||++++|.=+-.|+.|+|.++|..|+--.
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 6889999999974 35999999999999999999999999999999999999999999999998875321
Q ss_pred -----HHHHhcceEEEeccCCCc-cccHHHHHHcCCC---CCC-HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC
Q 002817 453 -----LKWLRQQIGLVNQEPALF-ATTIRENILYGKD---DAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (876)
Q Consensus 453 -----~~~lr~~i~~V~Q~~~Lf-~~TIreNI~~g~~---~~~-~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS 522 (876)
++.+|.+.++|+|.-.|. +.||.||+.=+.- ..+ .+.+.+|-+ ++.+ -|+...-..-...||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~------~L~k--VGi~ek~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEK------YLAK--VGIAEKADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHH------HHHH--hCchhhhhcCccccC
Confidence 466899999999999887 5799999964420 122 233333322 1222 133333334568999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
|||+||.||||||.-+|+++|+||||||||++--..+.+.++++. .|||.++|||.+.+.++ +.+++.+.+|+|-|+|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999999999999999999999999999999998888888888764 69999999999999998 7899999999999999
Q ss_pred ChhHHhcCCC
Q 002817 601 SHEELISNPN 610 (876)
Q Consensus 601 t~~eL~~~~~ 610 (876)
+++++..++.
T Consensus 235 ~P~qvf~nP~ 244 (256)
T COG4598 235 PPEQVFGNPQ 244 (256)
T ss_pred ChHHHhcCCC
Confidence 9999997643
No 310
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.4e-37 Score=325.48 Aligned_cols=197 Identities=27% Similarity=0.381 Sum_probs=155.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
+.++|++..|+. +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|+++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 566777777753 4699999999999999999999999999999999999999999999999876321
Q ss_pred EEeccCC-CccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 462 LVNQEPA-LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 462 ~V~Q~~~-Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
.+... ..+.|++||+.++.. ..+.++..+.+ ..+.++. .+++..++.+ .+||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~----~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKI--DEIIEFS-ELGDFIDLPV----KTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CChhhhhCCh----hhCCHHHHHHHHHHHHHhcC
Confidence 11122 235799999987642 12333322211 1122221 2344444444 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999998764 46899999999998865 9999999999999876
No 311
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-38 Score=301.58 Aligned_cols=204 Identities=30% Similarity=0.481 Sum_probs=169.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
+..++++.+|+..+ .++|+|+|++|.+||+++++||||||||||+|++.||.+|..|+|.+||.+|..-..+ =|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 45678999998765 5699999999999999999999999999999999999999999999999988754432 59
Q ss_pred EEeccCCCcc-ccHHHHHHcCCC-----CC-CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 462 LVNQEPALFA-TTIRENILYGKD-----DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~-----~~-~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
+|+|++-|+. -|+.||+.||.. ++ ..+...+-+.+.++.++= -..-.+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-----------~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-----------HKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-----------ccceEeecchHHHHHHHHHH
Confidence 9999999987 599999999962 21 122233444444443331 12346899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhh-hhcCEEEEEe--CCeEEEecCh
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQ--GRKIVKTGSH 602 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i-~~aD~Iivl~--~G~Ive~Gt~ 602 (876)
|..+|+.|+||||.+|||+-|.+++|+.+..+. .||-+++|||.++.. --|++++||+ .|+|++.=+.
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999987753 589999999999975 4599999998 5799986443
No 312
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=317.74 Aligned_cols=196 Identities=32% Similarity=0.501 Sum_probs=178.4
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC----CCCHHHHhcceEEEeccCCCc-cccHHH
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK----GLDLKWLRQQIGLVNQEPALF-ATTIRE 476 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~----~~~~~~lr~~i~~V~Q~~~Lf-~~TIre 476 (876)
++||+.+.-..+||-|+|||||||++|+|.|+..|++|.|.+||.-+. .+.+.--+++||||+||.-|| +-|||-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 588898887899999999999999999999999999999999998664 455667789999999999999 579999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 002817 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (876)
Q Consensus 477 NI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te 556 (876)
|++||....+.++..+.+.+-++...+++.| .+||||+|||+||+|||+.+|++||||||+|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999997777888999999988887777766 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 557 NSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 557 ~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+++.--|+++.+ +--++.|||.+..+.+ ||+|++|++|||...|.-+|.++.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999888888764 5689999999998755 999999999999999999999876
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.4e-37 Score=392.75 Aligned_cols=216 Identities=25% Similarity=0.427 Sum_probs=186.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..|+++|+++.|++. ++++++|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|.|++. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3569999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCC--CCCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGK--DDATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+|||||++.+|+ .|++|||.|+. ...+.+ ++.+.++.. |++.....+..+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-----------gL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----------GLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHH
Confidence 999999999986 59999998753 112222 233333332 233334556678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++.+|+|+|||||||+||+.+.+.+.+.|+++.+|+|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999999988789999999999999875 999999999999999999999765
No 314
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-37 Score=292.27 Aligned_cols=211 Identities=29% Similarity=0.425 Sum_probs=172.4
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---H
Q 002817 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---l 456 (876)
-|++++++..-++. .+..+|++++|.|++||.+|||||||||||||+.++.|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46778887776533 2356999999999999999999999999999999999999999999999999999999653 4
Q ss_pred h-cceEEEeccCCCc-cccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 457 R-QQIGLVNQEPALF-ATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 457 r-~~i~~V~Q~~~Lf-~~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
| ++||+|+|.-.|. |.|-.||+..-.. +...+.-..|.++ +... |+.-.+.--..+||||++||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~l------L~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKAL------LEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHH------HHHh--CcccccccCccccCchHHHHHHH
Confidence 4 5799999998876 6799999987531 1122222222221 2221 44444455567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
|||+...|+||+-||||-+||.+|...|-+.+-.+ -.|.|.|+|||+.+....|||++-|.+|++++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999998887544 358899999999999999999999999999864
No 315
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.5e-37 Score=342.22 Aligned_cols=186 Identities=37% Similarity=0.574 Sum_probs=156.4
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cHHHHHHcCCC--CCCH----
Q 002817 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKD--DATM---- 487 (876)
Q Consensus 415 iVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~~--~~~~---- 487 (876)
|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .+++|+||+|++.+|.. |++||+.|+.. ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999965 99999998742 1222
Q ss_pred HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 002817 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567 (876)
Q Consensus 488 ~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~ 567 (876)
+++.++++..++.++ ......+||||||||++|||||+++|++||||||||+||+.+...+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEF-----------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcch-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 234444444444333 233456899999999999999999999999999999999999999999998875
Q ss_pred C--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCCchH
Q 002817 568 V--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (876)
Q Consensus 568 ~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y 613 (876)
+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.+.+...|
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 3 7999999999998765 99999999999999999999987644333
No 316
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=363.88 Aligned_cols=212 Identities=19% Similarity=0.325 Sum_probs=171.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. +.+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999999762 27999999999999999999999999999999999999999999999999876554 467889
Q ss_pred eEEEeccC---CCcc-ccHHHHHHcCCCC-----------CCHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCCCH
Q 002817 460 IGLVNQEP---ALFA-TTIRENILYGKDD-----------ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSG 523 (876)
Q Consensus 460 i~~V~Q~~---~Lf~-~TIreNI~~g~~~-----------~~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~LSG 523 (876)
|+||+|++ .+|. -|++||+.++... .+.++.. ..+.+.++.+ |+. -........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ-----RTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH-----HHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 5665 5999999886320 0111111 1112223332 221 112334457999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
|||||++||||++.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++++.|+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998763 58899999999998755 99999999999999887
Q ss_pred hhH
Q 002817 602 HEE 604 (876)
Q Consensus 602 ~~e 604 (876)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 644
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1e-35 Score=379.34 Aligned_cols=216 Identities=20% Similarity=0.342 Sum_probs=182.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..|+++|++++|+++ +..+|+|+||+|++||++||+||+||||||++++|.|+.+|++|+|.++|.++.+ +.+..|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999642 2469999999999999999999999999999999999999999999999999975 45678899
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCC--CCCCHHHH----HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGK--DDATMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~v----~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
|||+||++.++. -|++||+.+.. ...+.+++ .++++..++ +.....+..+||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL-----------~~~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL-----------SLYADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHH
Confidence 999999998885 59999997632 11222332 223333333 2223344568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||++.+|+|++|||||++||+.+++.+.+.|+++ .+|+|+|++||+++.++. ||||++|++|++++.|+.++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999886 358999999999999876 999999999999999999999765
No 318
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=287.82 Aligned_cols=214 Identities=28% Similarity=0.501 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCe--eCCCCC----HH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN--NIKGLD----LK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~--di~~~~----~~ 454 (876)
.|+++|++|.|.+. .+|-||+|+.+.|+++.+.||||+|||||++.|.=+--|.+|+..|-|. |.+... ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999753 5899999999999999999999999999999999899999999999775 333333 46
Q ss_pred HHhcceEEEeccCCCcc-ccHHHHHHcCC---CCCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 455 WLRQQIGLVNQEPALFA-TTIRENILYGK---DDATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~---~~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
.||+.+|.|+|+-.|.. -||-||+.=.. -..+++ +..+.++.-.+.+|-+++| ..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 79999999999999984 69999985432 011222 2333444445555555555 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
||+||||||..+|++|++||||+|||++-..+|-+.|+++. .|.|-++|||.....++ |.+++.|++|+|+|+|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999998888888888875 48999999999999877 99999999999999999976
Q ss_pred HhcC
Q 002817 605 LISN 608 (876)
Q Consensus 605 L~~~ 608 (876)
.-+.
T Consensus 228 ft~p 231 (242)
T COG4161 228 FTEP 231 (242)
T ss_pred ccCc
Confidence 6443
No 319
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.3e-37 Score=361.03 Aligned_cols=217 Identities=18% Similarity=0.316 Sum_probs=173.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCeeCCCCCH-HHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDL-KWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~idG~di~~~~~-~~lr~ 458 (876)
-|+++|++++|+...+..+|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532224589999999999999999999999999999999999995 89999999999876543 56788
Q ss_pred ceEEEeccC---CCcc-ccHHHHHHcCCCC-------CCHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHHHH
Q 002817 459 QIGLVNQEP---ALFA-TTIRENILYGKDD-------ATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQK 526 (876)
Q Consensus 459 ~i~~V~Q~~---~Lf~-~TIreNI~~g~~~-------~~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGGQk 526 (876)
+|+||+|++ .+|. .|++||+.++... ...++.. ..+.++++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAEL-----QIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHH-----HHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 4665 6999999886311 0111111 1122223332 1211 12334468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
||++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|+..++-++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999888764 57899999999998865 99999999999998775443
No 320
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.8e-37 Score=391.70 Aligned_cols=213 Identities=24% Similarity=0.407 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCeeCCCCCHHHH
Q 002817 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~---p~~G~I~idG~di~~~~~~~l 456 (876)
.++++|++++|+.++ ++.+|+|+|+++++||++||+||||||||||+++|.|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996322 3569999999999999999999999999999999999998 78999999999985 357
Q ss_pred hcceEEEeccCC-CccccHHHHHHcCC----C-CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 457 RQQIGLVNQEPA-LFATTIRENILYGK----D-DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 457 r~~i~~V~Q~~~-Lf~~TIreNI~~g~----~-~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
|+.+|||+|++. +++.|||||+.|+. | +.+.++ +.++++.. .|.+-.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l-------~L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLL-------EMESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHc-------CChhhCCCeeCCCCCCCCHHHh
Confidence 899999999875 56779999999863 2 223332 33333333 3455679999999999999999
Q ss_pred HHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhh--hhcCEEEEEeCC-eEEEecC
Q 002817 527 QRIAISRAIVKNPS-ILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI--RNADVIAVVQGR-KIVKTGS 601 (876)
Q Consensus 527 QRIaiARAl~~~p~-IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i--~~aD~Iivl~~G-~Ive~Gt 601 (876)
||++|||||+.+|+ ||+||||||+||+.+...|.+.|+++ .+|+|+|+++|+++.. +.+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999973 679999999997 9999999
Q ss_pred hhH
Q 002817 602 HEE 604 (876)
Q Consensus 602 ~~e 604 (876)
.++
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 754
No 321
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=338.77 Aligned_cols=212 Identities=31% Similarity=0.481 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH-HHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~-~lr~~ 459 (876)
-++++|++.+|+. .++|+|+||++.+||..|++|.+|+|||||+|.|.|.|+|++|+|.+||.+..-.++. ....-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4789999999974 5699999999999999999999999999999999999999999999999999988775 56677
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCCCC------CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~~~------~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
|+.|.||..|+. -||.|||-+|+... ++.++.+.++..=. .+ .++...+++|| +||+||||-++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~--~l-g~~~~~~~~v~----~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLA--RL-GLDIDPDTLVG----DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHH--Hc-CCCCChhhhhh----hCCHHHHHHHHHH
Confidence 999999999985 59999999998432 34555544433211 01 11123677776 7999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
||+..+++|+|||||||||+.+..+.+.+.++++. +|.++|.|||||+.+.. ||||.||.||+.+..++.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999998888888888775 79999999999999876 999999999999988773
No 322
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=299.75 Aligned_cols=213 Identities=31% Similarity=0.512 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++||+.+|.+ ..+|+|+|++|++|+.++++||+|+|||||++.+.|+.++++|+|.+||.++.+++.+.|.+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 688999999974 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCc-cccHHHHHHcCC-C------CC-CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 462 LVNQEPALF-ATTIRENILYGK-D------DA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 462 ~V~Q~~~Lf-~~TIreNI~~g~-~------~~-~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
+.-|+..+- .-||||=+.||+ | .. +...|.+|.+.-++. .|.+.|- ..||||||||--||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~----~l~dryL-------d~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE----DLSDRYL-------DELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc----chHHHhH-------Hhcccchhhhhhhh
Confidence 999999875 459999999998 3 11 223345565554443 2333333 36999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
-.+.+|.|.++||||+.+||......+++.++++.. +||+++|-|+..+... +|+|+-|+||+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999999887653 8999999999999765 999999999999999999999975
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.6e-37 Score=358.75 Aligned_cols=210 Identities=19% Similarity=0.347 Sum_probs=172.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
-|+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 589999984 26999999999999999999999999999999999999999999999999987765 356788
Q ss_pred eEEEeccC---CCc-cccHHHHHHcCCCC--------CCHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCCCHHHH
Q 002817 460 IGLVNQEP---ALF-ATTIRENILYGKDD--------ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (876)
Q Consensus 460 i~~V~Q~~---~Lf-~~TIreNI~~g~~~--------~~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~LSGGQk 526 (876)
||||+|+| .+| +.|++||+.++... .+.++.. ..+.++++.+ |+. -........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 355 46999999875310 1111111 1122333332 221 123455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|+..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998874 47899999999998865 99999999999999998776
Q ss_pred H
Q 002817 605 L 605 (876)
Q Consensus 605 L 605 (876)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.6e-37 Score=360.42 Aligned_cols=209 Identities=27% Similarity=0.390 Sum_probs=169.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 23699999999999999999999999999999999999999999999976 2469
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCCC-----------------C-C--------HHHHHHHHHHHhhh-------hhHhcC
Q 002817 461 GLVNQEPALFA-TTIRENILYGKDD-----------------A-T--------MEEITRAAKLSEAM-------SFISNL 506 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~~-----------------~-~--------~~~v~~a~~~a~~~-------~~i~~l 506 (876)
|||+|+|+++. .|++|||.++... . . ++++.++++..+.+ +.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999985 5999999886310 0 0 12233333333322 222222
Q ss_pred chhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-c
Q 002817 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (876)
Q Consensus 507 p~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-a 585 (876)
|.+ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123456789999999999999999999999999999999999999999999876 3699999999999876 8
Q ss_pred CEEEEEeCCeEE-EecChhHHhc
Q 002817 586 DVIAVVQGRKIV-KTGSHEELIS 607 (876)
Q Consensus 586 D~Iivl~~G~Iv-e~Gt~~eL~~ 607 (876)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 7899998654
No 325
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=358.43 Aligned_cols=212 Identities=21% Similarity=0.336 Sum_probs=172.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. +..|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5899999842 37999999999999999999999999999999999999999999999999876543 456789
Q ss_pred eEEEeccCC---Cc-cccHHHHHHcCCCCC--------CHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCCCHHHH
Q 002817 460 IGLVNQEPA---LF-ATTIRENILYGKDDA--------TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQK 526 (876)
Q Consensus 460 i~~V~Q~~~---Lf-~~TIreNI~~g~~~~--------~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~LSGGQk 526 (876)
++|++|++. +| +.|+.||+.++.... ...+.. ..+.+++..+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 579999998864210 111111 1122233333 221 112334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~e 604 (876)
||++||||++.+|++|||||||++||..+.+.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+.+|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 47899999999998865 99999999999999999887
Q ss_pred Hh
Q 002817 605 LI 606 (876)
Q Consensus 605 L~ 606 (876)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.5e-36 Score=358.68 Aligned_cols=209 Identities=26% Similarity=0.381 Sum_probs=167.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|+. +.++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 5899999999962 246999999999999999999999999999999999999999999999752 369
Q ss_pred EEEeccCCCccc-cHHHHHHcCCCC----------------CC----------HHHHHHHHHHH-------hhhhhHhcC
Q 002817 461 GLVNQEPALFAT-TIRENILYGKDD----------------AT----------MEEITRAAKLS-------EAMSFISNL 506 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~~----------------~~----------~~~v~~a~~~a-------~~~~~i~~l 506 (876)
|||+|+|.+++. |++||+.++... .. +.++.+++... .+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999865 999999876310 00 01111111111 111222222
Q ss_pred chhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-c
Q 002817 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (876)
Q Consensus 507 p~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-a 585 (876)
|++ ....+..+||||||||++||||++.+|++||||||||+||+++...+.+.|+++ ++|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 121 123345689999999999999999999999999999999999999999999886 3699999999999876 9
Q ss_pred CEEEEEeCCeEE-EecChhHHhc
Q 002817 586 DVIAVVQGRKIV-KTGSHEELIS 607 (876)
Q Consensus 586 D~Iivl~~G~Iv-e~Gt~~eL~~ 607 (876)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899998754
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=356.79 Aligned_cols=208 Identities=21% Similarity=0.410 Sum_probs=166.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 35999999999999999999999999999999999999999999999983 3699
Q ss_pred EEeccCCCcc-ccHHHHHHcCCCC----------------CCHHH---HHHH----------HHHHhhhhhHhcCchhhh
Q 002817 462 LVNQEPALFA-TTIRENILYGKDD----------------ATMEE---ITRA----------AKLSEAMSFISNLPERFE 511 (876)
Q Consensus 462 ~V~Q~~~Lf~-~TIreNI~~g~~~----------------~~~~~---v~~a----------~~~a~~~~~i~~lp~G~~ 511 (876)
||+|++.+|. -|++||+.++... ...++ +.+. -....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998875 4999999876310 00000 0000 0011222333333 222
Q ss_pred hhh-cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEE
Q 002817 512 TQV-GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA 589 (876)
Q Consensus 512 T~v-Ge~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Ii 589 (876)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 211 234578999999999999999999999999999999999999999998875 47999999999999865 99999
Q ss_pred EEeCCeE-EEecChhHHhc
Q 002817 590 VVQGRKI-VKTGSHEELIS 607 (876)
Q Consensus 590 vl~~G~I-ve~Gt~~eL~~ 607 (876)
+|++|++ ++.|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 48999998864
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.5e-36 Score=314.74 Aligned_cols=186 Identities=17% Similarity=0.240 Sum_probs=156.1
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-ECCeeCCCCCHHHHhcceEEEeccCCCccc-cHHH
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-LDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRE 476 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~-idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIre 476 (876)
+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 787532 24467888875 9999
Q ss_pred HHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 002817 477 NILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (876)
Q Consensus 477 NI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~ 554 (876)
||.+.. ...+.++..+.+. + ...|++..++.++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998753 1233444433221 1 2345666676665 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhc
Q 002817 555 SENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 555 te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-+++.+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 99999998876667789999999999986 599999999999999999888754
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.2e-36 Score=293.55 Aligned_cols=143 Identities=36% Similarity=0.559 Sum_probs=134.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++++|++++|++ .++++|+||++++||.++|+||+|||||||+++|.|+++|++|+|.+||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 35899999999999999999999999999999999999999999999994 4799
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
|++| ||||||||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++||
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999866 89999999986
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-36 Score=319.79 Aligned_cols=193 Identities=26% Similarity=0.393 Sum_probs=156.1
Q ss_pred EECCCCCCCccccceeEEec-----CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEE
Q 002817 389 FCYPSRPDVAIFDKFCLDIP-----AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (876)
Q Consensus 389 f~y~~~~~~~vL~~isl~i~-----~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V 463 (876)
|+||+. .+.++|++|+++ +||+++|+||||||||||+++|.|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 678742 357899999987 68999999999999999999999999999999999995 59999
Q ss_pred eccCC-CccccHHHHHHcCCCCC-C-HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 464 NQEPA-LFATTIRENILYGKDDA-T-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 464 ~Q~~~-Lf~~TIreNI~~g~~~~-~-~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
+|++. .++.|++||+.+..... . .+...++++.. |++........+||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL-----------QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99987 47899999997653211 1 11122232222 23333445567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEE--EecChhHHh
Q 002817 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV--KTGSHEELI 606 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv--e~Gt~~eL~ 606 (876)
+|||||||++||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999998875 37999999999999885 9999999876444 456666654
No 331
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.3e-37 Score=323.93 Aligned_cols=202 Identities=19% Similarity=0.270 Sum_probs=160.6
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCCCH
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDL 453 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~-----------idG~di~~~~~ 453 (876)
.||+++|+. ...+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.++..
T Consensus 4 ~~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 368999963 235899999 4999999999999999999999999999999999996 88999877654
Q ss_pred HHHhc--ceEEEeccCCCccccHHHHHHcCCCCCC-HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 454 KWLRQ--QIGLVNQEPALFATTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 454 ~~lr~--~i~~V~Q~~~Lf~~TIreNI~~g~~~~~-~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
+..|. .++|++|++.++..++.+|+.+...... .+++.++++.. |++.....+..+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQL-----------ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHH
Confidence 44443 4789999887777666666654322111 22333333332 3344455677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|+ |++.+.|-
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~~ 221 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYGV 221 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCccee
Confidence 9999999999999999999999999999999998875 47999999999999885 99999995 66765443
No 332
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=353.02 Aligned_cols=202 Identities=23% Similarity=0.363 Sum_probs=169.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999964 35899999999999999999999999999999999999999999999983 479
Q ss_pred EEEeccCC--Cc-cccHHHHHHcCC-CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 461 GLVNQEPA--LF-ATTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 461 ~~V~Q~~~--Lf-~~TIreNI~~g~-~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
|||+|++. ++ +.|++||+.+.. +....+++.++++..++ + .........+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~---~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLF-------S---QDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCC-------C---hhHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999974 44 369999997532 22233445554444332 1 11233456799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEE-EecChhHHhcC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELISN 608 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~~~ 608 (876)
++|+||||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999886 4699999999999876 9999999999998 88999988754
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.4e-36 Score=348.68 Aligned_cols=211 Identities=18% Similarity=0.334 Sum_probs=171.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-Hhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~ 459 (876)
-|+++|++. .+|+|+||+|++|+++||+||+|||||||+++|.|+++|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998877654 4678
Q ss_pred eEEEeccC---CCcc-ccHHHHHHcCC----CC-CCHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCCCHHHHHHH
Q 002817 460 IGLVNQEP---ALFA-TTIRENILYGK----DD-ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 460 i~~V~Q~~---~Lf~-~TIreNI~~g~----~~-~~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~LSGGQkQRI 529 (876)
|+||||++ -+|. .|+.||+.... +. ....+.. ..+.++++.+ |+. .....+...||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 3665 59999996421 10 0111111 1122223333 222 223445568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|+..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998864 47999999999999876 9999999999999999988765
No 334
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=320.89 Aligned_cols=210 Identities=30% Similarity=0.487 Sum_probs=176.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
.++++|++..|| ...+++||||+|++||.-|+.|++|+|||||++.|.|+|+|++|+|.+||++++=-++ +..|.-
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3568999999999999999999999999999999999999999999999999987666 578889
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCCC-----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~~-----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
||+|.|++.|+.. |+.|||.+|.+.. +..++.+-.+. ..++ -|++-..-+.-..||-|||||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~-----l~~~--yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKE-----LSER--YGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHH-----HHHH--hCCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999965 9999999998532 33333222111 1111 12222233444579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
|||++|+|||||||||-|-+..-+.+.+.++++. .|+|+|+|||+|..++. ||++-||.+||++..-
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 9999999999999999999998888888888764 69999999999999887 9999999999986543
No 335
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-35 Score=346.46 Aligned_cols=205 Identities=24% Similarity=0.312 Sum_probs=164.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCeeCCC-CCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKG-LDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~idG~di~~-~~~~~lr~ 458 (876)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 3589999999999999999999999999999999998876 69999999987642 23445788
Q ss_pred ceEEEeccCCCcc---ccHHHHHHcCCC-------CCCH---HHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHH
Q 002817 459 QIGLVNQEPALFA---TTIRENILYGKD-------DATM---EEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGG 524 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~---~TIreNI~~g~~-------~~~~---~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGG 524 (876)
+|+|++|++.++. .|++||+.++.. .... +++.++++..+ ++. .......+||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILG-----------IDKRTADAPFHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcC-----------CchhhccCchhhCCHH
Confidence 9999999987642 478877764421 0111 22333333332 222 223345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CC-eEEEEcCCchhhhh--cCEEEEEeCCeEEEe
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GR-TTVVVAHRLSTIRN--ADVIAVVQGRKIVKT 599 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~-T~I~ItHrls~i~~--aD~Iivl~~G~Ive~ 599 (876)
||||++||||++.+|++|||||||++||+++...+.+.|+++.+ ++ |+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999999988753 44 69999999999974 899999999999875
No 336
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=342.16 Aligned_cols=212 Identities=18% Similarity=0.322 Sum_probs=168.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH-HHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~-~lr~~ 459 (876)
.|+++|+++.|. ++|+|+||+|++||++||+||+|||||||+++|.|+.+|++|+|.++|.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 589999999752 489999999999999999999999999999999999999999999999999877654 45788
Q ss_pred eEEEeccC---CCcc-ccHHHH-----HHcCCCC---CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 460 IGLVNQEP---ALFA-TTIREN-----ILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 460 i~~V~Q~~---~Lf~-~TIreN-----I~~g~~~---~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
++|++|++ .+|. .|+.+| +.+..+. .+.++..+ .+.++++.+.-+.+ .......+|||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~LSgGq~q 398 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGSLSGGNQQ 398 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-CcccccccCCcHHHH
Confidence 99999996 3555 577766 4322111 11111111 11222333311100 134455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChh
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~ 603 (876)
|++||||++++|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++..++.+
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999998764 58999999999998865 9999999999999888664
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=286.76 Aligned_cols=155 Identities=46% Similarity=0.721 Sum_probs=145.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+++|++|+|+.. ++++++||++++|+.++|+||+|||||||+++|.|+++|++|+|.++|.++.+.....++++++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 368999999742 58999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 002817 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (876)
Q Consensus 463 V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~Il 542 (876)
++| ||||||||++||||++.+|+++
T Consensus 78 ~~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 78 VPQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred Eee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 543 LLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 543 lLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
+|||||++||.++...+.+.+.+..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999987654 5899999999999988 59999999985
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1e-34 Score=289.84 Aligned_cols=145 Identities=28% Similarity=0.399 Sum_probs=132.0
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEe
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~ 464 (876)
.|++++|++ ..++++ +|++++||+++|+||||||||||+++|.|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 578899963 457888 4999999999999999999999999999999999999999996 389999
Q ss_pred ccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 002817 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544 (876)
Q Consensus 465 Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllL 544 (876)
|++. ||||||||++||||++.+|+++||
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9753 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 545 DEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 545 DE~tSaLD~~te~~i~~~l~~~~-~-~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
||||++||+++.+.+.+.++++. + ++|+|+|||+++.+.. ||+|++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999998864 3 3899999999999885 9999999988655
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.9e-34 Score=364.18 Aligned_cols=214 Identities=26% Similarity=0.424 Sum_probs=178.4
Q ss_pred cEEEEeEEEECCCC----------CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCeeC
Q 002817 381 HIEFKDVSFCYPSR----------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNI 448 (876)
Q Consensus 381 ~I~~~~vsf~y~~~----------~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p--~~G~I~idG~di 448 (876)
.+.|+||++..+.. ....+|+|+|++++||+++||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998532 123699999999999999999999999999999999999873 789999999876
Q ss_pred CCCCHHHHhcceEEEeccCCCcc-ccHHHHHHcCC----C-CCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCC
Q 002817 449 KGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGK----D-DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERG 518 (876)
Q Consensus 449 ~~~~~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~----~-~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G 518 (876)
+ ...+|+.+|||+|++.++. .||+||+.|+. | +.+.++ +.+.++..+ |.+-.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg-------L~~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE-------LDNLKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC-------ChhHhCCccCCCC
Confidence 4 3457888999999987765 59999998852 2 223322 334444433 3444688888665
Q ss_pred -CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh--hhhcCEEEEEeC-
Q 002817 519 -IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQG- 593 (876)
Q Consensus 519 -~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~- 593 (876)
..||||||||++|||||+.+|+||+||||||+||+++...+.+.|+++. +|+|+|+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999998874 58999999999984 467999999996
Q ss_pred CeEEEecChhH
Q 002817 594 RKIVKTGSHEE 604 (876)
Q Consensus 594 G~Ive~Gt~~e 604 (876)
|+++..|+..+
T Consensus 1097 G~~v~~G~~~~ 1107 (1470)
T PLN03140 1097 GQVIYSGPLGR 1107 (1470)
T ss_pred CEEEEECCccc
Confidence 89999998654
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4e-34 Score=338.13 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=163.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+++ ++ +|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3599999999999999999999999999999999999999999999965 21 59
Q ss_pred EEEeccC-CCcc-ccHHHHHHcCCCC----CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 461 GLVNQEP-ALFA-TTIRENILYGKDD----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 461 ~~V~Q~~-~Lf~-~TIreNI~~g~~~----~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
|||+|++ .++. .|++||+.++... ...++..++++..+ +++. .......+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~---~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFN-------FKGG---DQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCC-------CChh---HhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5654 5999999886421 11222222222211 2211 1233456899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeC-CeEEE-ecChhHHhcC
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-RKIVK-TGSHEELISN 608 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~-G~Ive-~Gt~~eL~~~ 608 (876)
++.+|++|||||||++||+.+...+.+.|+++ + .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999886 3 499999999998876 999999996 78874 7888777543
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-34 Score=286.84 Aligned_cols=156 Identities=24% Similarity=0.403 Sum_probs=129.6
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHH
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIr 475 (876)
.+++|+|+||++++|+.++|+||||||||||+++++ +++|+|.++|.. ... -|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 356899999999999999999999999999999996 369999998862 221 2456888887
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCH
Q 002817 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN--PSILLLDEATSALDA 553 (876)
Q Consensus 476 eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~--p~IllLDE~tSaLD~ 553 (876)
.+ +++.++-++. ....+..+||||||||++||||++++ |+++||||||++||+
T Consensus 68 ---------------~~---------~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 ---------------LQ---------FLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred ---------------HH---------HHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 11 2333322211 25667789999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 554 ~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
++.+.+.+.|+++. .++|+|+|||+++.++.||+|++|++|+
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999998765 5899999999999999999999997643
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.5e-34 Score=342.09 Aligned_cols=199 Identities=26% Similarity=0.366 Sum_probs=162.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++|+|++. .++|+|+||+|++|++++|+||||||||||+++|.|+.+|++|+|.+++. .+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeE
Confidence 59999999999632 35899999999999999999999999999999999999999999998762 469
Q ss_pred EEEeccCCCccccHHHHHHcC----CCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 461 GLVNQEPALFATTIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 461 ~~V~Q~~~Lf~~TIreNI~~g----~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
||++|++. ...++.+|..+. .+...++++.++++..++.+. .......+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999873 333566664321 133455666665555444211 122345789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEE-EecChhHH
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEEL 605 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL 605 (876)
.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999998888765 3 599999999999876 9999999999998 67887764
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.1e-34 Score=341.74 Aligned_cols=198 Identities=25% Similarity=0.404 Sum_probs=161.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++|+|+||+|++|+++||+||+|||||||+++|.|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999964 35899999999999999999999999999999999999999999999 5432 59
Q ss_pred EEEeccC-CCcc-ccHHHHHHcCCCCC--C--HHHHHHHHHHHhhhhhHhcCc-hhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEP-ALFA-TTIRENILYGKDDA--T--MEEITRAAKLSEAMSFISNLP-ERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~-~Lf~-~TIreNI~~g~~~~--~--~~~v~~a~~~a~~~~~i~~lp-~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
||++|++ .++. .|+.||+.++.+.. . ..++.+.++.. .++ +..++.+ ..||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~----~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDF-------LFHPKRAMTPV----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhc-------CCCHHHHhChh----hhCCHHHHHHHHHHH
Confidence 9999986 4654 49999998864322 1 12222222111 122 2234444 579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEe-CCeEEE-ecChhHH
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-GRKIVK-TGSHEEL 605 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~-~G~Ive-~Gt~~eL 605 (876)
|++.+|++|||||||++||..+...+.+.|++. +.|+|+|||++..+.. ||+|++|+ +|+|.+ .|+|++-
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999876 4699999999999865 99999998 899986 5777664
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.8e-34 Score=336.18 Aligned_cols=200 Identities=27% Similarity=0.401 Sum_probs=162.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+.+|++|+|.+++ ++ +|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3599999999999999999999999999999999999999999999955 22 59
Q ss_pred EEEeccCC-Ccc-ccHHHHHHcCCCC--CC--HHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPA-LFA-TTIRENILYGKDD--AT--MEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~-Lf~-~TIreNI~~g~~~--~~--~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGGQkQRIaiAR 533 (876)
|||+|++. ++. .|++||+.++.+. .. ..+..++ +..+ |+.. .......+||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY---------VGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH---------HHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999973 554 5999999987521 11 1112222 2222 2221 123445689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeC-CeEE-EecChhHHhc
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-RKIV-KTGSHEELIS 607 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~-G~Iv-e~Gt~~eL~~ 607 (876)
|++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999998873 499999999999876 999999997 5876 4677766543
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-34 Score=339.93 Aligned_cols=200 Identities=27% Similarity=0.373 Sum_probs=163.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 45999999999999999999999999999999999999999999999741 269
Q ss_pred EEEeccC--CCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEP--ALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~--~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
||++|++ .+. +.|+.+|+....+....+++.+.++..+. +. ..+......||||||||++||||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l-------~~---~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGF-------QG---DKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCC-------Ch---hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 344 34888887522222233344433333222 11 11223446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEE-EecChhHHh
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELI 606 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~ 606 (876)
+|++|||||||++||..+...+.+.|+++ +.|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999887 3599999999999876 9999999999998 788988763
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.8e-34 Score=334.00 Aligned_cols=193 Identities=25% Similarity=0.339 Sum_probs=160.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-++++|++++|++ ..|+++||+|++||.+||+||+|||||||+++|.|+.+|++|+|.++ . +|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------------eE
Confidence 4899999999963 24999999999999999999999999999999999999999999986 1 59
Q ss_pred EEEeccCCC-ccccHHHHHHcCCCCCC-HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 461 GLVNQEPAL-FATTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 461 ~~V~Q~~~L-f~~TIreNI~~g~~~~~-~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+|+||++.+ ++.|++||+.++.+... ...+.++++..++ +........+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l-----------~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL-----------ERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC-----------HHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999875 56799999998643222 2223333333332 2223344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
|+||||||||++||..+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++ ++...|+.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 999999999999999999999999998743 7899999999998865 999999965 88887873
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.5e-34 Score=277.65 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=175.4
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCC--c-cc
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL--F-AT 472 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L--f-~~ 472 (876)
++++|+++||+|++|+++-|+|.+|+|||||++.|.|..+|++|+|.|||+|+..++.+.-...++=|+|||-. + +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999963 4 56
Q ss_pred cHHHHHHcCCCC---CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 002817 473 TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (876)
Q Consensus 473 TIreNI~~g~~~---~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS 549 (876)
||.||+.+.... -....-...-+.....+-+..+|.|++-..+.+-.-|||||||=++|+-|.++.|+||+|||=|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 999999886411 11112222333444555578899999999999988999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchh-hhhcCEEEEEeCCeEEEecC
Q 002817 550 ALDAESENSVQEALDRVM--VGRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 550 aLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~-i~~aD~Iivl~~G~Ive~Gt 601 (876)
||||.+...|.+.=.+.- .+-|+++|||.++. +..-+|.++|++|+|+-.=+
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 999998888866554432 35799999999985 67789999999999997533
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.5e-34 Score=299.45 Aligned_cols=231 Identities=31% Similarity=0.484 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCC-CCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCeeCCCCCHH
Q 002817 381 HIEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~-~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----~~G~I~idG~di~~~~~~ 454 (876)
-++++|++.+|.. .....++++|||+|++||++|+||+||||||--...++|+++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3678887777742 2345789999999999999999999999999999999999865 479999999999999999
Q ss_pred HHhc----ceEEEeccCCC-ccc--cH----HHHHHcCC---CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 455 WLRQ----QIGLVNQEPAL-FAT--TI----RENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 455 ~lr~----~i~~V~Q~~~L-f~~--TI----reNI~~g~---~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
.+|. +|+.++|||.- .|- || .|-|.+-+ ..+-.+++.+.++.+++.+ |+ -.+..-...
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~-----p~---~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE-----PE---KRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc-----hh---hhhhhCCcc
Confidence 9887 79999999963 332 44 44444433 2233455666666666533 11 123344679
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
||||||||+.||-||..+|++||-||||.|||.....+|.+.|+++. .|..+++|||+|..+++ ||+|+||.+|+|+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999998764 48899999999999987 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHHHH
Q 002817 598 KTGSHEELISNPNSAYAALVQL 619 (876)
Q Consensus 598 e~Gt~~eL~~~~~g~y~~l~~~ 619 (876)
|.|+-++|.+.+...|.+..-.
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ 259 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLA 259 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHh
Confidence 9999999999877788775543
No 349
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-33 Score=280.58 Aligned_cols=211 Identities=29% Similarity=0.394 Sum_probs=175.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQ 458 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~ 458 (876)
.-|+++||++.|.+ +++|+|+|++|++||..+|+||+|||||||++++.+.++|++|.+.+-|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 35999999999974 469999999999999999999999999999999999999999999999999988888 99999
Q ss_pred ceEEEeccC---CCccccHHHHHHcCC------C--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 459 QIGLVNQEP---ALFATTIRENILYGK------D--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 459 ~i~~V~Q~~---~Lf~~TIreNI~~g~------~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
+||+|+-+- +.=+.+++|-++=|. . +.++++..+|-.+... + |.....+..-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~------~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLEL------L--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHH------c--chhhhccCchhhcCHhHHH
Confidence 999998643 223567888775442 1 4455555444433322 1 3333445556799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV---GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
|+-||||++++|.+||||||+++||....+.+.+.+.++.. ..|+|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999888888877643 5789999999998765 89999999999999874
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-33 Score=361.73 Aligned_cols=207 Identities=22% Similarity=0.251 Sum_probs=170.8
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc-
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY----EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA- 471 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~----~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~- 471 (876)
+++|+|+|+++++||++||+||||||||||+++|.|.. .|.+|+|.+||.++.+.+ ...|+.++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45899999999999999999999999999999999986 579999999999987654 456788999999988876
Q ss_pred ccHHHHHHcCC----C-----CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcC-CCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 472 TTIRENILYGK----D-----DATMEEITRAAKLSEAMSFISNLPERFETQVGE-RGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 472 ~TIreNI~~g~----~-----~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
-||+||+.|+. | +.+.++..+.... .+.+. -.|.+-.||.||+ ....||||||||++||||++.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIAD-VYMAT-YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHHHH-cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 59999999862 1 1233332211100 11111 1456667899986 4568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCch-hh-hhcCEEEEEeCCeEEEecChhHHh
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLS-TI-RNADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls-~i-~~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
++||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ .+ +.+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 999999999999999999999998753 799999999974 45 559999999999999999999874
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=331.48 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=160.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. .++|+|+||+|++|+++|||||+|||||||+++|.|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 358999999999999999999999999999999999999999999999842 389
Q ss_pred EEeccCCCccccHHHHHHcCCCCC---CH-----------HHHHHHHH----------HHhhhhhHhcCchhhh-hhhcC
Q 002817 462 LVNQEPALFATTIRENILYGKDDA---TM-----------EEITRAAK----------LSEAMSFISNLPERFE-TQVGE 516 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~---~~-----------~~v~~a~~----------~a~~~~~i~~lp~G~~-T~vGe 516 (876)
|++|++..+..|+.+++.-+.... +. ..+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976556667776664321000 00 00000000 01122223332 222 12233
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 517 ~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
...+||||||||++|||||+.+|++|||||||++||.++...+.+.|++. +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 45689999999999999999999999999999999999999999998875 5799999999999876 99999999999
Q ss_pred EEE-ecChhHHhc
Q 002817 596 IVK-TGSHEELIS 607 (876)
Q Consensus 596 Ive-~Gt~~eL~~ 607 (876)
+.. .|+|++...
T Consensus 224 i~~~~g~~~~~~~ 236 (638)
T PRK10636 224 LFEYTGNYSSFEV 236 (638)
T ss_pred EEEecCCHHHHHH
Confidence 974 798887654
No 352
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-33 Score=265.54 Aligned_cols=214 Identities=24% Similarity=0.435 Sum_probs=176.0
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCC-Cccc---
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA-LFAT--- 472 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~-Lf~~--- 472 (876)
..+.+.|||+.++|++.||+|.+|||||||.+.|.|..+|++|+|++||+++.--+-..-.++|-.++|||. -||-
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 346889999999999999999999999999999999999999999999999987777777889999999995 3442
Q ss_pred --cHHHH-HHcC---CCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 002817 473 --TIREN-ILYG---KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546 (876)
Q Consensus 473 --TIreN-I~~g---~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE 546 (876)
+|.|- +... .|+++.+++.+.++++++ +|+--+- ....||-|||||+||||||+-+|+|+|-||
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 22211 0111 144567788888888887 6654332 246899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh--cCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCC-chHHHHHHHH
Q 002817 547 ATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN-SAYAALVQLQ 620 (876)
Q Consensus 547 ~tSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~-g~y~~l~~~~ 620 (876)
|..+||.....++.+...++ ..|-.-|.|+..+-.+++ +|+|+||++|+++|.|+..|+++.+. ..-++|++..
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHH
Confidence 99999999998887766544 348899999999999999 99999999999999999999998642 3344555444
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=257.31 Aligned_cols=192 Identities=30% Similarity=0.469 Sum_probs=162.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCeeCCCCCHHHHhc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~---~G~I~idG~di~~~~~~~lr~ 458 (876)
+.++||+.+-|++ ..|-|+||+|.+||.+-+.||||||||||++-+.|++.++ +|++.+|++++..++.+ ++
T Consensus 3 l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 3 LCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred eeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 5689999887643 5899999999999999999999999999999999999885 89999999999887754 68
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCC-----CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKD-----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~-----~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
++|+.+||+|||. -+|.+||.|.-| +++......|++..++.++..+.| .+||||||.|||+-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 9999999999996 599999999874 244555667777777777766666 48999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHh-cCCCeEEEEcCCchhhhhcCEEE
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEAL-DRV-MVGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l-~~~-~~~~T~I~ItHrls~i~~aD~Ii 589 (876)
|+|+..|+.++||||.|.||..-+....+-. .+. ..+..+|+|||+++.++.-.|++
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeee
Confidence 9999999999999999999999888776554 332 34889999999999877433433
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3e-33 Score=356.12 Aligned_cols=207 Identities=22% Similarity=0.342 Sum_probs=170.6
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc-c
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-T 472 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~---~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~-~ 472 (876)
..+|+|+|++|+|||.++|+||+|||||||+++|.|.++|+ +|+|.+||+++.+... |+.++||+|++.++. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999999876543 788999999987775 6
Q ss_pred cHHHHHHcCCC----C--------CCHH----------H---HHHHHHHHh------hhhhH--hcCchhhhhhhcCCC-
Q 002817 473 TIRENILYGKD----D--------ATME----------E---ITRAAKLSE------AMSFI--SNLPERFETQVGERG- 518 (876)
Q Consensus 473 TIreNI~~g~~----~--------~~~~----------~---v~~a~~~a~------~~~~i--~~lp~G~~T~vGe~G- 518 (876)
||+||+.|+.. . .+.+ + +.+++...+ .++.+ -.|.+-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999998521 0 0111 1 111211110 11122 245666789998654
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCch--hhhhcCEEEEEeCC
Q 002817 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS--TIRNADVIAVVQGR 594 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls--~i~~aD~Iivl~~G 594 (876)
..||||||||++||||++.+|++++|||||++||+.+...+.+.|+++. .++|+|+++|+++ ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999874 4889999999974 45669999999999
Q ss_pred eEEEecChhHHh
Q 002817 595 KIVKTGSHEELI 606 (876)
Q Consensus 595 ~Ive~Gt~~eL~ 606 (876)
+++..|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999886
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.5e-32 Score=325.91 Aligned_cols=207 Identities=25% Similarity=0.392 Sum_probs=159.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++|+|+||+|++|+++|||||||||||||+++|.|+++|++|+|.++|. . .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EE
Confidence 3789999999964 35999999999999999999999999999999999999999999999883 1 27
Q ss_pred EEEeccCCC-ccccHHHHHHcCCCC-----------------CC-HHHHHHHHH-------------HHhhhhhHhcCch
Q 002817 461 GLVNQEPAL-FATTIRENILYGKDD-----------------AT-MEEITRAAK-------------LSEAMSFISNLPE 508 (876)
Q Consensus 461 ~~V~Q~~~L-f~~TIreNI~~g~~~-----------------~~-~~~v~~a~~-------------~a~~~~~i~~lp~ 508 (876)
+|++|++.. ..+++.+++..+... .+ .+.+...+. ...+.+.+..+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 888887643 346777776433100 00 010100000 01122222222
Q ss_pred hhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCE
Q 002817 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADV 587 (876)
Q Consensus 509 G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~ 587 (876)
|+. .......||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||+...+.+ ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 221 12344689999999999999999999999999999999999999999999877 3699999999999876 999
Q ss_pred EEEEeCCeEEE-ecChhHHhc
Q 002817 588 IAVVQGRKIVK-TGSHEELIS 607 (876)
Q Consensus 588 Iivl~~G~Ive-~Gt~~eL~~ 607 (876)
|++|++|+++. .|+|++.+.
T Consensus 223 i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEECCEEEEecCCHHHHHH
Confidence 99999999985 699987654
No 356
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-30 Score=308.08 Aligned_cols=220 Identities=31% Similarity=0.487 Sum_probs=184.5
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCeeCCCCCHH
Q 002817 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGLDLK 454 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p---~~G~I~idG~di~~~~~~ 454 (876)
..++|+|++..-+..+ .+.+|+|||.+++|||..||.||||||||||++.|.|-.++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 4689999999886542 46799999999999999999999999999999999999874 799999999 456788
Q ss_pred HHhcceEEEeccCCCccc-cHHHHHHcCC----CC-CCHHHHHHHHHHHhhhhhHhcCc--hhhhhhhcC-CCCCCCHHH
Q 002817 455 WLRQQIGLVNQEPALFAT-TIRENILYGK----DD-ATMEEITRAAKLSEAMSFISNLP--ERFETQVGE-RGIQLSGGQ 525 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~----~~-~~~~~v~~a~~~a~~~~~i~~lp--~G~~T~vGe-~G~~LSGGQ 525 (876)
.+|+..|||+||..++.. ||+|++.|.. |. .+.++..+. ..+.+..|. +=-||.||. .+..+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~-----V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRER-----VEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCChhhccceecCCCCCccccch
Confidence 999999999999999865 9999999864 32 133332221 112233332 336899984 346899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh--hhhcCEEEEEeCCeEEEecCh
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST--IRNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~--i~~aD~Iivl~~G~Ive~Gt~ 602 (876)
|+|++||--++.||+||+||||||+||+.+..++.+.|+++. +|||+|+.=|+++. ....|++++|.+|+++..|+.
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999998864 69999999999985 566999999999999999999
Q ss_pred hHHhc
Q 002817 603 EELIS 607 (876)
Q Consensus 603 ~eL~~ 607 (876)
+++..
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 88753
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.98 E-value=1e-32 Score=324.90 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=155.8
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCCCH
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDL 453 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~-----------idG~di~~~~~ 453 (876)
++++++|.. +..+|++++ ++++||++|||||||||||||+++|.|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348999963 335899999 9999999999999999999999999999999999998 99998876532
Q ss_pred H--HHhcc----eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 454 K--WLRQQ----IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 454 ~--~lr~~----i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
+ ..+.+ +.|++|.|.+|.+|++||+.+.. ..+++.++++..++.+ -.++ .-.+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l~~-------~~~~----~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGLEN-------ILDR----DISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCCch-------hhcC----ChhhCCHHHHH
Confidence 2 11223 45666678888999999997521 1234444444433321 1233 34579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCC
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G 594 (876)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999987668999999999999876 9999999874
No 358
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=2.2e-31 Score=268.22 Aligned_cols=189 Identities=31% Similarity=0.431 Sum_probs=157.2
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc--cc
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TT 473 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~--~T 473 (876)
..++|+||||++++||.++|||++|||||||+++|.|.|+|++|+|.++|. |+..---..=|+ .|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 346899999999999999999999999999999999999999999999995 664444433343 58
Q ss_pred HHHHHHcCC--CCCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 002817 474 IRENILYGK--DDATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (876)
Q Consensus 474 IreNI~~g~--~~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~ 547 (876)
-||||.+-. ...+. +.+.+..+-|.+.+|+. .|| .+.|-|.+.|+|.|=|.-.+||||||||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-------~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-------QPV----KTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-------Cch----hhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 999997532 22333 34455556666767653 343 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 548 TSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 548 tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+|..|+.=.++=++-++++ .+++|+|+|+|+++.+++ ||++++|++|+|...|+.+|.++.
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999998666666666666 678999999999999987 999999999999999999999754
No 359
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=3.4e-32 Score=262.49 Aligned_cols=136 Identities=43% Similarity=0.735 Sum_probs=124.0
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cHHHHH
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI 478 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIreNI 478 (876)
|+|+||+|++|++++|+|++|||||||+++|.|.++|++|+|.+||.++.+.+...+|+.++|++|++.+|++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987 59999
Q ss_pred HcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 002817 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (876)
Q Consensus 479 ~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS 549 (876)
..++++.++++..++.+ ..++.++.++..||||||||++||||++++|++|||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34456666666665533 45788888999999999999999999999999999999996
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.7e-31 Score=320.02 Aligned_cols=221 Identities=24% Similarity=0.303 Sum_probs=163.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEECCeeCCC--CCH-
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY---EPLSGEILLDGNNIKG--LDL- 453 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~---~p~~G~I~idG~di~~--~~~- 453 (876)
..|+++|++|+|++ .++|+|+||+|++|+++|||||||||||||+++|.|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 36999999999963 35999999999999999999999999999999999864 5889999865554321 111
Q ss_pred -----------HHHhcceEEEeccCCCccccHHHHHHcCCC-CCCH----HHHHHHHHHHhh----------hhhHhcCc
Q 002817 454 -----------KWLRQQIGLVNQEPALFATTIRENILYGKD-DATM----EEITRAAKLSEA----------MSFISNLP 507 (876)
Q Consensus 454 -----------~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~-~~~~----~~v~~a~~~a~~----------~~~i~~lp 507 (876)
..+++.+++++|+|-+...+..+|...... ..+. +++.++.+..+. .+.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 124566899999987655555555422110 1111 222222222211 1112222
Q ss_pred hhhh-hhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-c
Q 002817 508 ERFE-TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (876)
Q Consensus 508 ~G~~-T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-a 585 (876)
|++ ......-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 111 0111223589999999999999999999999999999999999999999999886 7899999999999977 9
Q ss_pred CEEEEEeCCeEE-EecChhHHhc
Q 002817 586 DVIAVVQGRKIV-KTGSHEELIS 607 (876)
Q Consensus 586 D~Iivl~~G~Iv-e~Gt~~eL~~ 607 (876)
|+|++|++|++. ..|++++...
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999996 6888876554
No 361
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=9.9e-32 Score=267.41 Aligned_cols=213 Identities=24% Similarity=0.467 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.+++++|+.+|. +..+++|+||++++|+..+++||+|+||||.+++|+|+.+|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 478999999996 3568999999999999999999999999999999999999999999999998864 456689
Q ss_pred EEEeccCCCcc-ccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCch-hhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 461 GLVNQEPALFA-TTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPE-RFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~-G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
||.|.|--|+. .|+.|-+.|-. .....+|+.+ .+..|++++.- |+. ..+-..||-|..|.|.+--|++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~~~---~~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVGKK---TKKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccccccc---cchHHHhhhhhhHHHHHHHHHh
Confidence 99999999985 69999999854 3444444433 23445555531 121 2345789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
++|+++|||||+|+|||.+.+.+.+.+.++. .|.|+|.-|||++.++. ||+++.|++|+.|-+|+-++..+.
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 9999999999999999999999988887764 69999999999999987 999999999999999999998764
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=7.7e-31 Score=301.01 Aligned_cols=207 Identities=30% Similarity=0.521 Sum_probs=166.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|+. .++++|+||++.+|++++|||++|||||||+++|.|...|++|+|...+. + +|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~----------~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-L----------RV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-c----------eE
Confidence 4889999999963 46999999999999999999999999999999999999999999999872 1 49
Q ss_pred EEEeccCCCccc-cHHHHHHcCCCCCC--HHHHHHHH------------HH-------------HhhhhhHhcC--chhh
Q 002817 461 GLVNQEPALFAT-TIRENILYGKDDAT--MEEITRAA------------KL-------------SEAMSFISNL--PERF 510 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~~~~--~~~v~~a~------------~~-------------a~~~~~i~~l--p~G~ 510 (876)
+|++|++.+.+. |++|.+..|..+.. ..+..++. ++ +.+...+..| |+-
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 999999999965 99999998863210 01111110 00 1111112222 211
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEE
Q 002817 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA 589 (876)
Q Consensus 511 ~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Ii 589 (876)
++++ .+||||||-|++|||||+.+||||||||||.+||.++-..+.+-|.+. +| |+|+|||+-.++.+ |++|+
T Consensus 148 ~~~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 148 DRPV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred cCch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheE
Confidence 4444 479999999999999999999999999999999999999999999865 45 99999999999988 99999
Q ss_pred EEeCCeEE-EecChhHHhcC
Q 002817 590 VVQGRKIV-KTGSHEELISN 608 (876)
Q Consensus 590 vl~~G~Iv-e~Gt~~eL~~~ 608 (876)
-++.|++. ..|+|+.-++.
T Consensus 222 ~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 222 ELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred EecCCceeEecCCHHHHHHH
Confidence 99999876 57888776653
No 363
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=257.73 Aligned_cols=215 Identities=29% Similarity=0.397 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHH-HHh
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLK-WLR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~-~lr 457 (876)
-++++|++.+-..+ +++|+++||+|++||+.||.||+|||||||.+.|+|. |++++|+|.+||+||.+++++ .-|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36889998887532 4799999999999999999999999999999999997 799999999999999999986 467
Q ss_pred cceEEEeccCCCccc-cHHHHHHcCCCC---------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 458 QQIGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~-TIreNI~~g~~~---------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
.-|.+..|.|.=+.| |+.+=++.+... ...+++.++++..+..+. =.+-.|+ ..+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~------~l~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE------FLERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH------HhhcccC---CCcCcchHH
Confidence 789999999998888 888877654311 224556666666555431 1222333 469999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhc--CEEEEEeCCeEEEecChhH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNA--DVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~a--D~Iivl~~G~Ive~Gt~~e 604 (876)
|.-|+.+++-+|++.|||||=|+||..+-+.|-+.++.++ +++++++|||+-..+... |++.||-+|+|+.+|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998875 589999999998888775 99999999999999999 7
Q ss_pred Hhc
Q 002817 605 LIS 607 (876)
Q Consensus 605 L~~ 607 (876)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 754
No 364
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=255.10 Aligned_cols=214 Identities=25% Similarity=0.432 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-eeCCCCCHHHH-hc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG-NNIKGLDLKWL-RQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG-~di~~~~~~~l-r~ 458 (876)
-++++||+.++++ -.+|+|+||++.+||.-+|+||+|+||||++..|.|--+|++|+++++| .|+..++.... |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4688999999864 3589999999999999999999999999999999999999999999999 99999998765 56
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCCC--------------CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGKD--------------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~~--------------~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
-||==+|.|.+|.. ||+||+.+... ....+++.+.+...++.+ ....-..+||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-----------~~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-----------ERDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-----------hhhhhhhhhcc
Confidence 69999999999965 99999976531 112234555554444422 22233468999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecCh
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~ 602 (876)
||||++-|+--+.++|++|+||||++++-.+.....-+.|+.+.+++++++|-|++.+++. ||+|-||..|.|..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999666556667778888889999999999999987 999999999999999999
Q ss_pred hHHhcC
Q 002817 603 EELISN 608 (876)
Q Consensus 603 ~eL~~~ 608 (876)
+|+.++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 999765
No 365
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=3.5e-26 Score=248.31 Aligned_cols=440 Identities=16% Similarity=0.210 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCh---hhhhcCCChhHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 127 YTGERQAAKMRMAYLRSMLNQDI---SLFDTEASTGEVI---SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (876)
Q Consensus 127 ~~~~~~~~~lR~~~~~~l~~~~~---~~~~~~~~~G~l~---s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (876)
+.-.+++...|.++.+|++++-. .||.-.+.-|.+- +.+|+|+..+.+..++...++..-++-.+..-..+.-.
T Consensus 179 yle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s 258 (728)
T KOG0064|consen 179 YLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDS 258 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 34455666777777777776532 3332211223332 46899998887776654444443333222222111111
Q ss_pred HHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 002817 201 VWQISL--VTLS--IVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYK 276 (876)
Q Consensus 201 ~~~l~l--~~l~--~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 276 (876)
.-..+. +.++ .+-+..-+...+..+..+...+.....+.....=+-.+++-..|-.|+..+.+.++.++..+....
T Consensus 259 ~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~ 338 (728)
T KOG0064|consen 259 ATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVE 338 (728)
T ss_pred hccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 111111 1111 111111122222222222333333333334445668899999999999999999999888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhcccC---HHH----HHHHH-HHHHHHHHHHH
Q 002817 277 YGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVV------------HKHISN---GGE----SFTTM-LNVVIAGLSLG 336 (876)
Q Consensus 277 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~lt---~g~----~~~~~-~~~~~~~~~l~ 336 (876)
.....-..+.++..+-++++ --.|-|.-++ ..+..+ .+. -|++- -....+...+.
T Consensus 339 qm~li~k~r~~YiMleqF~m-----KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAie 413 (728)
T KOG0064|consen 339 QMNLIFKVRLWYIMLEQFVM-----KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIE 413 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 54443333333332222222 1122221111 111111 111 12211 11222334455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccc----------c-ccCc-------ccCCCCC-----CCcccEEEEeEEEECCC
Q 002817 337 QAAPDITAFIRAKAAAYPIFEMIERDTM----------S-KASS-------KTGRKLD-----KLSGHIEFKDVSFCYPS 393 (876)
Q Consensus 337 ~~~~~~~~~~~a~~a~~ri~~~l~~~~~----------~-~~~~-------~~~~~~~-----~~~~~I~~~~vsf~y~~ 393 (876)
.+...+..+.+-..-..|+++.++--.+ . +..+ .++.+.+ .....|.++||-.--|+
T Consensus 414 RlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~ 493 (728)
T KOG0064|consen 414 RLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA 493 (728)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC
Confidence 5556666666666666677654421100 0 0000 0000000 11235999999887775
Q ss_pred CCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcccc
Q 002817 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (876)
Q Consensus 394 ~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~T 473 (876)
. ..+..++||+|++|-.+-|.||+|||||+|.+.|.|++|...|...+--. .+|-|+||.|+.=-||
T Consensus 494 ~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~-----------~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 494 G--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP-----------NNIFYIPQRPYMSGGT 560 (728)
T ss_pred c--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC-----------cceEeccCCCccCcCc
Confidence 3 34779999999999999999999999999999999999999888776442 2599999999999999
Q ss_pred HHHHHHcCC-------CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 002817 474 IRENILYGK-------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546 (876)
Q Consensus 474 IreNI~~g~-------~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE 546 (876)
.||-|-|-. .+.++.|+++.+....++.. .+-..|.|..- +--.-||||+|||++.||.+|++|+.-+|||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 999999864 35788899999999888754 44455666443 3335799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEE
Q 002817 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVI 588 (876)
Q Consensus 547 ~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~I 588 (876)
+|||+-.+.|..+-++.++. |-+.|-||||.+..+.-...
T Consensus 639 cTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~l 678 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHL 678 (728)
T ss_pred hhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHH
Confidence 99999999999998888775 88999999999987754333
No 366
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.3e-30 Score=241.14 Aligned_cols=228 Identities=25% Similarity=0.438 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC-----eeCCCCCHHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG-----NNIKGLDLKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG-----~di~~~~~~~ 455 (876)
-++++++|..|.+. .-.+|+||++.|||..+|||+||||||||+++|.+-..|++|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 46788999999744 357899999999999999999999999999999999999999999854 3344444333
Q ss_pred ----HhcceEEEeccCC--C-cc----ccHHHHHH-cCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 456 ----LRQQIGLVNQEPA--L-FA----TTIRENIL-YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 456 ----lr~~i~~V~Q~~~--L-f~----~TIreNI~-~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
+|.--|+|.|+|- | .. +.|-|-+. .| .-.|-++.+. +.+|+++.. =..+.+.+...++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G--~RHYG~iR~~-----a~~WL~~VE-I~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG--ARHYGNIRAE-----AQDWLEEVE-IDLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhh--hhhhhhHHHH-----HHHHHHhcc-cCcccccCcccccch
Confidence 4556799999994 1 11 12222211 11 1123344332 345555543 234567788899999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEec
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~G 600 (876)
|.+||+.|||-|+..|++.++||||-+||...++.+.+.++++-. +-.+|+|||+|...+- ||+..||++|+++|+|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999999988753 6799999999999876 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHH
Q 002817 601 SHEELISNPNSAYAALVQL 619 (876)
Q Consensus 601 t~~eL~~~~~g~y~~l~~~ 619 (876)
--+..+..+...|.+|.-.
T Consensus 235 LTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred cccccccCCCCchHHHHHH
Confidence 9999998877888887643
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.5e-30 Score=267.47 Aligned_cols=192 Identities=26% Similarity=0.357 Sum_probs=127.1
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHH-HHHHcCCCCCccEEEEC-C------eeCCCCC---HHHHhc-ceEEE
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI-SLIERFYEPLSGEILLD-G------NNIKGLD---LKWLRQ-QIGLV 463 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll-~lL~~~~~p~~G~I~id-G------~di~~~~---~~~lr~-~i~~V 463 (876)
+..+|+|+||+|++||++||+||||||||||+ ..+. .+|++.+. + ..+..+. ...++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 35689999999999999999999999999996 4432 13433211 0 1111111 111221 23444
Q ss_pred eccCC-Ccc--cc---HHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 464 NQEPA-LFA--TT---IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 464 ~Q~~~-Lf~--~T---IreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
.|++. .++ .+ +.+...+-..-...++..+. .+.++.+ |+.. .......+||||||||++||||++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 45443 111 12 22222111000000111111 1223322 2222 245677899999999999999999
Q ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE------eCCeEEEec
Q 002817 537 KNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTG 600 (876)
Q Consensus 537 ~~p--~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~G 600 (876)
++| +++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 998 5999999999999999999999998764 588999999999999999999999 999999987
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=5.1e-30 Score=270.84 Aligned_cols=193 Identities=26% Similarity=0.436 Sum_probs=141.1
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHH-----c-CC----CCCcc-----------EEEECCeeCCCCCH----
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-----R-FY----EPLSG-----------EILLDGNNIKGLDL---- 453 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~-----~-~~----~p~~G-----------~I~idG~di~~~~~---- 453 (876)
.|+|+|++||.|++++|.|+||||||||++-++ + +. .|..+ -|.+|..+|..-..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998663 2 11 13322 35666655533211
Q ss_pred ------HHHhc----------------ceEEEeccCC-CccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhh
Q 002817 454 ------KWLRQ----------------QIGLVNQEPA-LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510 (876)
Q Consensus 454 ------~~lr~----------------~i~~V~Q~~~-Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~ 510 (876)
+.+|+ .+.|..++.. +.+.|+.||+.|.......++..+ .++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~---------~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQ---------TLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHH---------HHHHc--CC
Confidence 11121 1334444443 345577777766432111122222 22222 34
Q ss_pred hh-hhcCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhc
Q 002817 511 ET-QVGERGIQLSGGQKQRIAISRAIVKN---PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNA 585 (876)
Q Consensus 511 ~T-~vGe~G~~LSGGQkQRIaiARAl~~~---p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~a 585 (876)
+. ..++...+||||||||++|||||.++ |+++||||||++||++..+.+.+.|+++. ++.|+|+|+|+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 36788899999999999999999996 79999999999999999999999998865 479999999999999999
Q ss_pred CEEEEE------eCCeEEEecCh
Q 002817 586 DVIAVV------QGRKIVKTGSH 602 (876)
Q Consensus 586 D~Iivl------~~G~Ive~Gt~ 602 (876)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=9.4e-29 Score=283.83 Aligned_cols=203 Identities=30% Similarity=0.416 Sum_probs=171.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
.-++++|++++|++. .++++++||.|++|+++|||||+|+|||||+++|.|...|.+|+|.++-. + +
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------K 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------E
Confidence 358999999999743 57999999999999999999999999999999999999999999988653 2 5
Q ss_pred eEEEeccC-CCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 460 IGLVNQEP-ALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 460 i~~V~Q~~-~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|||.+|+- .++ +.|+.|++.-+.|+..+.++...+...+.. ++--.++ -..||||||-|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~------~~~~~~~----v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT------GEDQEKP----VGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC------hHHHhCc----hhhcCHhHHHHHHHHHHhcc
Confidence 99999987 444 449999998877665566776666554431 1222333 45899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEe-cChhHHhcC
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT-GSHEELISN 608 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~-Gt~~eL~~~ 608 (876)
+|.+|||||||..||.++-..+.++|... .-|+|+|+|+-.++.+ |++|+++++ ++.+. |+|++-.+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999887 5699999999999988 999999999 77776 888886653
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.2e-29 Score=253.49 Aligned_cols=201 Identities=25% Similarity=0.384 Sum_probs=153.1
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEe-cc---CCCcccc
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN-QE---PALFATT 473 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~-Q~---~~Lf~~T 473 (876)
++.+|+||+||||+.++++||+|+||||.+++|.|...|++|.|.++|.+--+=..+.+|+ +++|. |. -|-.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~-~~~v~gqk~ql~Wdlp-- 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLVMGQKLQLWWDLP-- 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHH-HHHHhhhhheeeeech--
Confidence 4789999999999999999999999999999999999999999999998766533334444 44432 32 22221
Q ss_pred HHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 002817 474 IRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551 (876)
Q Consensus 474 IreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaL 551 (876)
+.|-+..-+ -+..+++..+ ++..+ .+-| +++..+-.+-..||-|||-|.-||-||+++|+||+|||||=+|
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~--r~~~l---~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAE--RLDFL---TEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHH--HHHHH---HHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 222222111 1122222211 11111 2212 3444555566899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 552 DAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 552 D~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|......|.+.+++.. .+.|+++.||.++-+.. ||||++|++|+++..||.++|.+.
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999999999998753 57899999999998866 999999999999999999999765
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=7e-29 Score=253.66 Aligned_cols=164 Identities=24% Similarity=0.334 Sum_probs=133.3
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC---------ccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---------SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA 471 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~---------~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~ 471 (876)
+++++++++| +++|+||||||||||+++|.++..|. .|++.++|.++.. ...+++|+||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 3468788877654 23468899999999888
Q ss_pred ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCC
Q 002817 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEA 547 (876)
Q Consensus 472 ~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~----~~p~IllLDE~ 547 (876)
|+.. ..+++.++++. ++-.+ .....||||||||++||||+. ++|+++|||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 3321 12344444333 22122 344689999999999999986 57799999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 548 tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
|++||++....+.+.|+++.++.|+|+|||+++.++.||+++.|..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778999999999999999999998864
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-28 Score=233.42 Aligned_cols=188 Identities=23% Similarity=0.399 Sum_probs=157.9
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+.+|++..- .+..++.++||++.+||.+-|+||+|||||||+++|.|+.+|++|+|.++|.++.... ++.++..-|
T Consensus 4 ~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 4 EAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred hhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 344555433 3456899999999999999999999999999999999999999999999999887654 334778888
Q ss_pred EeccCCCcc-ccHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 463 VNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 463 V~Q~~~Lf~-~TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
..-.|-+=. -|++||+.|-.+ ..+.+.+.+|+..+++.++ +.+| + .+||-|||.|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcCC
Confidence 888887754 599999999763 2567899999999999775 3444 3 37999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH-hcCCCeEEEEcCCchhhhhc
Q 002817 539 PSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNA 585 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~-~~~~~T~I~ItHrls~i~~a 585 (876)
+|+.|||||++|||.+.+..+...+.. ..+|-.||..||+.--+..|
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 999999999999999999999887765 45788999999998766543
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=3.4e-28 Score=252.50 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=147.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEec-CCCEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVISLIE-RFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~-~G~~vaiVG~sGsGKSTll~lL~-~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
.|+++|.. +|.++ ++++|+.. +|++++|+||+|||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58899988 77532 46777654 59999999999999999999999 4666666666554 2234445556777
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchh-hhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER-FETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G-~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
.|++++|++.-.- .+++++ ..+.++..+... ++.| +++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~----~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKY----RVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEE----EEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 8999999984322 222232 445555544331 2333 5666778889999999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhhh-cCEEEEEeCCeE
Q 002817 538 ----------NPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (876)
Q Consensus 538 ----------~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~~G~I 596 (876)
+|+++||||||++||+.+...+.+.++++.+ ++|+|+|||+++.+.. +|+|++|++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6799999999999999999999999988765 8899999999998866 899999999854
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.3e-27 Score=251.93 Aligned_cols=191 Identities=25% Similarity=0.320 Sum_probs=137.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHH----------------cCCCCCcc------
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE----------------RFYEPLSG------ 439 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~----------------~~~~p~~G------ 439 (876)
|+++|-- +|. +..++++++ |++++|+||+|||||||+++|. ++..+.+|
T Consensus 4 i~~~nfk-sy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGFK-SYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCcc-Ccc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 5555431 354 234677776 8899999999999999999998 33445555
Q ss_pred --EEEECCeeCCC-C--CHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhH--hcCchhhhh
Q 002817 440 --EILLDGNNIKG-L--DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI--SNLPERFET 512 (876)
Q Consensus 440 --~I~idG~di~~-~--~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i--~~lp~G~~T 512 (876)
+|.+++.|-.. + +...+++++++++|++.++. ...+.+++..+++..+....- ..+|+|..+
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 55555532211 0 22345677888888776543 234566677776665543210 012344332
Q ss_pred h-------hcCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchh
Q 002817 513 Q-------VGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (876)
Q Consensus 513 ~-------vGe~G~~LSGGQkQRIaiARAl~----~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 581 (876)
. ..+++.+||||||||++||||++ ++|+++||||||++||+++.+.+.+.|+++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2 35788899999999999999996 468999999999999999999999999988778899999999888
Q ss_pred hhhcCEEEEEe
Q 002817 582 IRNADVIAVVQ 592 (876)
Q Consensus 582 i~~aD~Iivl~ 592 (876)
.+.||+|++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 88899999986
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.1e-27 Score=223.49 Aligned_cols=202 Identities=30% Similarity=0.404 Sum_probs=145.1
Q ss_pred cEEEEeEEEECC----CCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC----eeCCCCC
Q 002817 381 HIEFKDVSFCYP----SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG----NNIKGLD 452 (876)
Q Consensus 381 ~I~~~~vsf~y~----~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG----~di~~~~ 452 (876)
.+..+|++.++. ..-.-||++|+||+++.||++++=||||+|||||++.|-+-|.|++|+|.+.- .|+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 356777766552 11124799999999999999999999999999999999999999999999843 3444444
Q ss_pred HH----HHhcceEEEeccCCCcc-----ccHHHHH-HcCCCCCCHHHHH-HHHHHHhhhhhHhcCchhhhhhhcCCCCCC
Q 002817 453 LK----WLRQQIGLVNQEPALFA-----TTIRENI-LYGKDDATMEEIT-RAAKLSEAMSFISNLPERFETQVGERGIQL 521 (876)
Q Consensus 453 ~~----~lr~~i~~V~Q~~~Lf~-----~TIreNI-~~g~~~~~~~~v~-~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L 521 (876)
+. --|+.||||+|---... +-+.|-+ ..|-+ .+.-. +|..+- . =.++|+.+-.. -..++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~---~~~a~~~a~~Ll---~-rLnlperLW~L---aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP---REVARAKAADLL---T-RLNLPERLWSL---APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC---HHHHHHHHHHHH---H-HcCCCHHHhcC---CCccc
Confidence 43 23677999999422111 1122222 12221 11111 111111 0 11456655433 35799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhh-cCEEEEEe
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQ 592 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~ 592 (876)
|||++||+.|||.++-|-|||+|||||++||+.+.+.+.+.|++. .+|...|=|=|+-+.=.. |||++-|.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999999999999765 468889999999876544 89998775
No 376
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=283.02 Aligned_cols=216 Identities=25% Similarity=0.421 Sum_probs=184.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC-CCHHHHhc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-LDLKWLRQ 458 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~-~~~~~lr~ 458 (876)
..+..+|++..|+.... +.+++|+.|++||+.++-|++||||||++++|.|..+|++|++.++|.+++. .+....|+
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 36889999999985432 8999999999999999999999999999999999999999999999999975 45567999
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCC--CCCCHHHH----HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGK--DDATMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~--~~~~~~~v----~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
++||+||+..|+.. |.||.+.+-. ......++ .+.|+..++.+ ..++++ .++|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~-------~~~~~~----~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGP-------YANKQV----RTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChh-------hhccch----hhCCCcchhhHHH
Confidence 99999999988865 9999997643 22233333 33444433322 334444 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG-RTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~-~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|-|++.+|++++|||||+++|+.+++.+-+.|.+..++ |.+|+.||-++..+. |||+.+|.+|++..-|+.++|.++
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 99999999999999999999999999999999988765 499999999999988 999999999999999999999765
No 377
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.93 E-value=8.7e-23 Score=217.71 Aligned_cols=272 Identities=19% Similarity=0.257 Sum_probs=226.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139 (876)
Q Consensus 60 ~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 139 (876)
++.++.++.++..++.|++++.++|.+...... .........+.++++.++.........+...+.+.++..++|.+
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD---NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKR 79 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777778899999985432111 11112222222223333344444444445568899999999999
Q ss_pred HHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219 (876)
Q Consensus 140 ~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~ 219 (876)
+++++++.|.++|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.++++.++..|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 80 LFEKLLRLPYSYFDK-NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHHSHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh-hcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 999999999999999 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLS 299 (876)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 299 (876)
..+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...|.....+...+...++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHH-HHhcccCHHHHHHHHHHHHHHHHHH
Q 002817 300 WSLLVWYVSVV-VHKHISNGGESFTTMLNVVIAGLSL 335 (876)
Q Consensus 300 ~~~~~~~g~~~-~~~~~lt~g~~~~~~~~~~~~~~~l 335 (876)
.++++++|+++ +..|.+|+|++++++.+......|+
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 88999999999 9999999999998887777766664
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=7.5e-26 Score=232.75 Aligned_cols=163 Identities=25% Similarity=0.284 Sum_probs=130.6
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHH----cCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccC-----CCcc-c
Q 002817 403 FCLDIPAGKIVALVGGSGSGKSTVISLIE----RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP-----ALFA-T 472 (876)
Q Consensus 403 isl~i~~G~~vaiVG~sGsGKSTll~lL~----~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~-----~Lf~-~ 472 (876)
.++++.+| +++|+||||||||||+.+|. |...|..|.+..+.. .+....-+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~---~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPK---LIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHH---HHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 998888887762222 222234567899999998 4443 2
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH------HHHHHHHccCCCEEEEeC
Q 002817 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR------IAISRAIVKNPSILLLDE 546 (876)
Q Consensus 473 TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR------IaiARAl~~~p~IllLDE 546 (876)
|+.||+.++. .+++.+.. .+...+|||||||| ++||||+..+|+++||||
T Consensus 92 ~~~~~~~~~~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998762 22222111 45567999999996 799999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 547 ATSALDAESEN-SVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 547 ~tSaLD~~te~-~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
||++||+++.. .+.+.|+++.+ ++|+|+|||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999988 99999988765 7899999999999999999999975
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1e-25 Score=240.05 Aligned_cols=181 Identities=19% Similarity=0.257 Sum_probs=137.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCe-eCCCCC--HHHHhcceEEEeccCCC---------c-cccHH
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYEPL-SGEILLDGN-NIKGLD--LKWLRQQIGLVNQEPAL---------F-ATTIR 475 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~p~-~G~I~idG~-di~~~~--~~~lr~~i~~V~Q~~~L---------f-~~TIr 475 (876)
..+++||||||||||||+.+|.+.+.++ .|++...|. |+-... ...-+..|++++|++-. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888876 432111 11234589999999622 1 45888
Q ss_pred HHHHcCCC--------CCCHHHHHHHHHHHhhh----hhHhcCchhh-------hhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 476 ENILYGKD--------DATMEEITRAAKLSEAM----SFISNLPERF-------ETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 476 eNI~~g~~--------~~~~~~v~~a~~~a~~~----~~i~~lp~G~-------~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
+||..+.. ....+++.++++..++. .|+ +|+|. .........+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~--i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFL--IMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEE--EeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 88866531 23456677777766652 011 11111 12334567799999999999999997
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEe
Q 002817 537 ----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (876)
Q Consensus 537 ----~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 592 (876)
++|+++||||||++||+.+...+.+.|+++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999998878899999999999999999998764
No 380
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=5.6e-25 Score=267.38 Aligned_cols=97 Identities=35% Similarity=0.573 Sum_probs=90.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p---~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Ii 589 (876)
.+....+||||||||++|||||+++| ++|||||||++||.++.+.+.+.|+++. +|+|+|+|+|+++.++.||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 57788999999999999999999999 9999999999999999999999998875 5899999999999999999999
Q ss_pred EE------eCCeEEEecChhHHhcCCC
Q 002817 590 VV------QGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 590 vl------~~G~Ive~Gt~~eL~~~~~ 610 (876)
+| ++|+|++.|+++++.+.+.
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99 7999999999999987633
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=7e-25 Score=276.35 Aligned_cols=212 Identities=22% Similarity=0.364 Sum_probs=155.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHH---------HHHcCCCCCcc--------EEEE
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS---------LIERFYEPLSG--------EILL 443 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~---------lL~~~~~p~~G--------~I~i 443 (876)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888762 2699999999999999999999999999999 55554332111 2455
Q ss_pred CCeeCCCCCH----------HHHh---------cceE-----EEecc------------------C--------------
Q 002817 444 DGNNIKGLDL----------KWLR---------QQIG-----LVNQE------------------P-------------- 467 (876)
Q Consensus 444 dG~di~~~~~----------~~lr---------~~i~-----~V~Q~------------------~-------------- 467 (876)
|-.++..-.. +.+| ++.+ +.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5554432111 1344 1111 12221 1
Q ss_pred ------CCcc-ccHHHHHHcCCCCC-----CHHHHHHHHHHHhhhhhHhcCchhhhhh-hcCCCCCCCHHHHHHHHHHHH
Q 002817 468 ------ALFA-TTIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQ-VGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 468 ------~Lf~-~TIreNI~~g~~~~-----~~~~v~~a~~~a~~~~~i~~lp~G~~T~-vGe~G~~LSGGQkQRIaiARA 534 (876)
..++ -||.||+.++..++ ..+++.+.++ . ++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~---~---L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH---A---LCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH---H---HHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1333 38999998885422 1334443332 1 2222 55544 678888999999999999999
Q ss_pred Hc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEe------CCeEEEecChhH
Q 002817 535 IV---KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQ------GRKIVKTGSHEE 604 (876)
Q Consensus 535 l~---~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~------~G~Ive~Gt~~e 604 (876)
|+ ++|++|||||||++||+++.+.+.+.|+++. +|+|+|+|+|+++.++.||+|++|+ +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998874 5899999999999998899999996 899999999999
Q ss_pred HhcC
Q 002817 605 LISN 608 (876)
Q Consensus 605 L~~~ 608 (876)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9864
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=3.3e-26 Score=236.56 Aligned_cols=185 Identities=18% Similarity=0.241 Sum_probs=138.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHh-cc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr-~~ 459 (876)
.|+++|.- +|.. ..+++++++ ++++|+||+||||||++++|. .++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 46777765 6753 358888887 899999999999999999997 3355443 2334 57
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCCCCCHHHH-----HHHH-H---HHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEI-----TRAA-K---LSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v-----~~a~-~---~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
+++++|+..+++. |.++++.+-......+.. .... . ..+....+..||++.++.++ .||||||||+
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r~ 136 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTLS 136 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHHH
Confidence 9999999877654 777776554321111100 0000 0 00111235567888887654 7999999999
Q ss_pred HHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 530 AISRAIVK----NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 530 aiARAl~~----~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
+||||++. +|++++|||||++||+++...+.+.++++.++.|+|+|||+.+..+.||+|++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998888999999999888888999999964
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=1.1e-25 Score=212.76 Aligned_cols=208 Identities=25% Similarity=0.416 Sum_probs=175.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
+.++||+-+- -|-.+|.++..||..-+|||+|||||||+..+.|+. |-+|+|.++|.|+..++..+|.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566665421 266789999999999999999999999999999986 46999999999999999999999999
Q ss_pred EEeccC-CCccccHHHHHHcCCCCC-CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc--
Q 002817 462 LVNQEP-ALFATTIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK-- 537 (876)
Q Consensus 462 ~V~Q~~-~Lf~~TIreNI~~g~~~~-~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~-- 537 (876)
|.+|+- -.|...|..-+.+..|+. ...++-+.|.+-++ +-..|..-.+||||+-||+-+|-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998864 578999999999988752 23345555555444 333455557999999999999998886
Q ss_pred ---C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCch-hhhhcCEEEEEeCCeEEEecChhHHhcC
Q 002817 538 ---N--PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 538 ---~--p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls-~i~~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
| .++||||||-+.||...+..+...|.++. +|.|+|+-.|+|+ |+++||++..+..|++..+|.-+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 47899999999999999998888887764 6999999999998 8999999999999999999999999864
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=3.7e-25 Score=242.64 Aligned_cols=194 Identities=30% Similarity=0.420 Sum_probs=161.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
.-|.++||+|.|++++ .+++++||-|..++.+|+|||+|+|||||++++.|...|+.|.|.-.-+. +
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 3689999999998654 68999999999999999999999999999999999999999999765542 2
Q ss_pred eEEEecc---CCCccccHHHHHHcCCC-CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 460 IGLVNQE---PALFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 460 i~~V~Q~---~~Lf~~TIreNI~~g~~-~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
+++-.|. ..-.+.|.-||++=--+ .-+.+++...+...++....+.-| + .+||+|||.||+.||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHH
Confidence 4554553 34567788888863334 355677777777777653333333 2 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEE
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive 598 (876)
++.|.||+|||||++||.++-....++|.++ .-++|+|+|+.-.|.+ |++|.+.+||.+..
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999999999999999999999999999886 5689999999999987 99999999998865
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=9.5e-25 Score=261.66 Aligned_cols=199 Identities=28% Similarity=0.402 Sum_probs=169.4
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC--CCccEEEECCeeCCCCCHHHHhcceEEEeccC-CCccc
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP-ALFAT 472 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~--p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~-~Lf~~ 472 (876)
...+|+||+=-++||.++|++|+||||||||++.|.|=-. ..+|+|+|||.+..+ +..++.+|||.|+. ++=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 4568999999999999999999999999999999997532 357999999998766 88999999999976 56677
Q ss_pred cHHHHHHcCC----C-CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC-CEE
Q 002817 473 TIRENILYGK----D-DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP-SIL 542 (876)
Q Consensus 473 TIreNI~~g~----~-~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p-~Il 542 (876)
||||-+.|.. | +.+. +-|+++.++.++. +=-|..||.-|..||..||.|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-------~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-------EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-------hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999999874 2 2222 3355555555443 33567899999999999999999999999999 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchh--hhhcCEEEEEe-CCeEEEecChhH
Q 002817 543 LLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLST--IRNADVIAVVQ-GRKIVKTGSHEE 604 (876)
Q Consensus 543 lLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~--i~~aD~Iivl~-~G~Ive~Gt~~e 604 (876)
+||||||+||+++...|.+.++++ ..|+|+++.=|++|. .+..|+++.|+ +|+.|..|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999999987 479999999999994 58899999997 579999998654
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=4.2e-24 Score=239.07 Aligned_cols=213 Identities=23% Similarity=0.375 Sum_probs=171.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
.++++|++.. ..++|+||++++||.++|.|-.|||+|=++.+|.|..++.+|+|.+||++++--++ +..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4667776542 14789999999999999999999999999999999999999999999999887775 488999
Q ss_pred eEEEeccC----CCccccHHHHHHcCC-CCCCHH-HHHHHHHHHhhhhhHhcCc---hhhhhhhcCCCCCCCHHHHHHHH
Q 002817 460 IGLVNQEP----ALFATTIRENILYGK-DDATME-EITRAAKLSEAMSFISNLP---ERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 460 i~~V~Q~~----~Lf~~TIreNI~~g~-~~~~~~-~v~~a~~~a~~~~~i~~lp---~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
|+|||-|- .+...||++||.+.. +..... -+..+.+.+-+.+++..|- .+.+++| .+||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHH
Confidence 99999864 345679999998873 111100 2333444444455555542 2333444 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhH
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 604 (876)
|||.|..+|+||||||||-++|.-+.+.|.+.|+++. +|+++|+|+-.+..+- .||||+||.+|+|+..=+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999874 6899999999999876 699999999999997544443
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.6e-23 Score=254.27 Aligned_cols=92 Identities=36% Similarity=0.615 Sum_probs=86.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVK---NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~---~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Ii 589 (876)
.++...+||||||||++|||||.+ +|++|||||||++||+++.+.+.+.|+++. +|+|+|+|+|++..++.||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 578889999999999999999997 599999999999999999999999998875 5899999999999999999999
Q ss_pred EE------eCCeEEEecChhHH
Q 002817 590 VV------QGRKIVKTGSHEEL 605 (876)
Q Consensus 590 vl------~~G~Ive~Gt~~eL 605 (876)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999999886
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.5e-24 Score=228.71 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=135.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCee-C------CCCCHHHHhcceEEEeccC--CCccccHHHHHH--
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-I------KGLDLKWLRQQIGLVNQEP--ALFATTIRENIL-- 479 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~d-i------~~~~~~~lr~~i~~V~Q~~--~Lf~~TIreNI~-- 479 (876)
..++|+||+|||||||+.+|.+...+..|++..++.+ + ...+.....-.+.+..|++ .++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888887655421 1 1111223334455655653 345555554321
Q ss_pred -cCCCCCCHHHHHHHHHHHhhhhhHhc--CchhhhhhhcCCC---------CCCCHHHHHHHHHHHHHcc----CCCEEE
Q 002817 480 -YGKDDATMEEITRAAKLSEAMSFISN--LPERFETQVGERG---------IQLSGGQKQRIAISRAIVK----NPSILL 543 (876)
Q Consensus 480 -~g~~~~~~~~v~~a~~~a~~~~~i~~--lp~G~~T~vGe~G---------~~LSGGQkQRIaiARAl~~----~p~Ill 543 (876)
+.....+.+++.+.++..+...+... +|+|.-+.+.+.. .+||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 11234667788888888777533211 3566656665543 7899999999999999975 499999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 544 LDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 544 LDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
|||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||+|++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999988765 7899999999999999999999864
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=3.8e-22 Score=218.58 Aligned_cols=216 Identities=25% Similarity=0.445 Sum_probs=175.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeC-CCCCHHHHhc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-KGLDLKWLRQ 458 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di-~~~~~~~lr~ 458 (876)
.-++++|++..=+ + ..+.++++||+|++||.++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ..+++...|+
T Consensus 256 ~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3578999987643 2 24679999999999999999999999999999999999999999999999997 6778776655
Q ss_pred -ceEEEeccCC----CccccHHHHHHcCCCC---------CCHHHHHHHHHHH-hhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 459 -QIGLVNQEPA----LFATTIRENILYGKDD---------ATMEEITRAAKLS-EAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 459 -~i~~V~Q~~~----Lf~~TIreNI~~g~~~---------~~~~~v~~a~~~a-~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
.+||||.|.+ ...-|+.||+.++.-+ .+..++.+.++.. .-.| | -+.|-++++ .+|||
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fd-V--r~~~~~~~a----~~LSG 406 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFD-V--RAPSPDAPA----RSLSG 406 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcC-c--cCCCCCcch----hhcCC
Confidence 6999999873 5678999999988622 2344554443322 1111 1 134444444 58999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
|+.||+-+||-+.++|++||..+||-+||....+.|.+.|.+. .+|+.+++|+-.|+.+.. ||||.||.+|+|+...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 9999999999999999999999999999999999997777654 578999999999998765 99999999999998877
Q ss_pred hhH
Q 002817 602 HEE 604 (876)
Q Consensus 602 ~~e 604 (876)
.++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 665
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=7.3e-22 Score=216.90 Aligned_cols=218 Identities=22% Similarity=0.326 Sum_probs=142.9
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
...|.++|++++|++ .++++|..|++.+|+.++|+|++||||||+++.|.|--.|..-++.+-=.+ +++.+..+-
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~- 147 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQ- 147 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHH-
Confidence 457999999999974 458999999999999999999999999999999998877755443221000 000000000
Q ss_pred ceEEEeccCCCccccHHH-------HHHcCCCCCCHHHHHHHHHH---Hhhhh-------hHhcCchhh-hhhhcCCCCC
Q 002817 459 QIGLVNQEPALFATTIRE-------NILYGKDDATMEEITRAAKL---SEAMS-------FISNLPERF-ETQVGERGIQ 520 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIre-------NI~~g~~~~~~~~v~~a~~~---a~~~~-------~i~~lp~G~-~T~vGe~G~~ 520 (876)
+-|....+..+-+- ++.-..++...++...+-+. .+... .+.. .|. ....-..-.+
T Consensus 148 ----av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~g--lgf~~~m~~k~~~~ 221 (614)
T KOG0927|consen 148 ----AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHG--LGFLSEMQDKKVKD 221 (614)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHh--cCCCHhHHHHHhhc
Confidence 00000001111111 11111011010110000000 00000 0000 011 1222234478
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCe-EEE
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK-IVK 598 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~-Ive 598 (876)
||||||-|++|||||+.+|++|||||||.+||.++-.-+.+-|.+..+. |.+++.|.-.++.. |.+|+-|++++ +..
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeee
Confidence 9999999999999999999999999999999999999999988776333 89999999999988 99999999999 778
Q ss_pred ecChhHHhcC
Q 002817 599 TGSHEELISN 608 (876)
Q Consensus 599 ~Gt~~eL~~~ 608 (876)
.|+|++.+..
T Consensus 301 ~Gnydqy~~t 310 (614)
T KOG0927|consen 301 EGNYDQYVKT 310 (614)
T ss_pred cCCHHHHhhH
Confidence 9999988754
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.1e-21 Score=214.51 Aligned_cols=209 Identities=25% Similarity=0.334 Sum_probs=169.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..+++.+|+|.|++.+- +.+.+++++++.-+.+++||++|+||||+++++.+...|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 46999999999975432 789999999999999999999999999999999999999999999888 457
Q ss_pred eEEEeccCCCc-cccHH--HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC-CCCCHHHHHHHHHHHHH
Q 002817 460 IGLVNQEPALF-ATTIR--ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAI 535 (876)
Q Consensus 460 i~~V~Q~~~Lf-~~TIr--eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G-~~LSGGQkQRIaiARAl 535 (876)
|+|-.|.-.=| +-.+- |-..=-.|..+++|+.+.|..-|+.. ++.-.+ ..||||||-|+++|-..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g-----------~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSG-----------ELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCc-----------hhhhccccccCCcchhHHHHHHHh
Confidence 99998865322 22221 21111236678999999998776543 333333 57999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEe-cChhHHhcCCCchH
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT-GSHEELISNPNSAY 613 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~-Gt~~eL~~~~~g~y 613 (876)
..+|.+|+|||||..||.++-..+-++|++. +--||+|||+.+++.. |+.+.+.++|+|... |+ ...|
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~--------~~~y 567 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG--------IDKY 567 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeecc--------HHHH
Confidence 9999999999999999999999999999887 4579999999999988 999999999999862 22 1246
Q ss_pred HHHHHHHH
Q 002817 614 AALVQLQE 621 (876)
Q Consensus 614 ~~l~~~~~ 621 (876)
+++...+.
T Consensus 568 Kkl~~~e~ 575 (582)
T KOG0062|consen 568 KKLLGAEL 575 (582)
T ss_pred HHHHHHHH
Confidence 77766554
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=7.2e-22 Score=202.13 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=118.9
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC-CHHHHhcceEEEeccCCCccccHHHHH
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-DLKWLRQQIGLVNQEPALFATTIRENI 478 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~-~~~~lr~~i~~V~Q~~~Lf~~TIreNI 478 (876)
++++++++.+| +.+|+||+|||||||+.+|.-.+....+ ..-.|..++++ ....-...|.++.|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 45677787777 7799999999999999998744332211 01112211110 00112456788888766554 2
Q ss_pred HcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHH
Q 002817 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAE 554 (876)
Q Consensus 479 ~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl----~~~p~IllLDE~tSaLD~~ 554 (876)
+ ..+.+ .+.+.+++.. .+. ..++..+||||||||++||||+ +.+|+++||||||++||..
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1223333433 222 3345669999999999999999 6899999999999999999
Q ss_pred HHHHHHHHHHHhcC----CCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 555 SENSVQEALDRVMV----GRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 555 te~~i~~~l~~~~~----~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
+...+.+.|++..+ ++|+|++||++..+.+.|+|-||..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999998887643 358999999999999999999998753
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.2e-21 Score=208.26 Aligned_cols=192 Identities=30% Similarity=0.421 Sum_probs=147.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-+-+.||+|.||+. .|.+++++|-|.-...+|||||+|.|||||++||.|.++|++|+..-+- |=+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 46789999999863 5789999999999999999999999999999999999999999876543 3358
Q ss_pred EEEeccCC--C-ccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPA--L-FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~--L-f~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|+--|..- | -..|-.|-+.-+- +..|++...++-.-++..- -+|. .-..||||||.|+++|---++
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcC
Confidence 88777542 1 1224444443221 3456666666655544211 1222 235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcC-EEEEEeCCeEEE
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNAD-VIAVVQGRKIVK 598 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD-~Iivl~~G~Ive 598 (876)
.||||||||||.+||.++-..+-++|++. +-.||+|+|+-..|...| ...|+++-.|-|
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 99999999999999999999999999887 457999999998887765 456666655543
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=1.6e-21 Score=195.80 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=78.4
Q ss_pred HhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcC
Q 002817 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAH 577 (876)
Q Consensus 503 i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~----~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItH 577 (876)
+..+|+|..|+| ||||||||++||||+. ++|+++||||||++||+...+.+.+.+.++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 556899999999 9999999999999984 79999999999999999999999999987754 589999999
Q ss_pred CchhhhhcCEEEEEeC
Q 002817 578 RLSTIRNADVIAVVQG 593 (876)
Q Consensus 578 rls~i~~aD~Iivl~~ 593 (876)
+++.+..+|+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999986
No 395
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.85 E-value=2.2e-21 Score=203.78 Aligned_cols=199 Identities=19% Similarity=0.255 Sum_probs=141.1
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCeeCCCCCHHHHhcce--EEEeccCCCccccHHHHHHc
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI--LLDGNNIKGLDLKWLRQQI--GLVNQEPALFATTIRENILY 480 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I--~idG~di~~~~~~~lr~~i--~~V~Q~~~Lf~~TIreNI~~ 480 (876)
+.+.+||+++|+||+|+|||||++.+.+.++...+++ .+-...-+..+..++.+.+ .+|-.+. +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 5789999999999999999999999999988764432 2222222224454444444 1111100 0011111100
Q ss_pred CCCCCCHHHHHHHHHHH--h-----hhhhHhcCchhhhhhhcCCCCCCCHHH--------HHHHHHHHHHccCCCEEEEe
Q 002817 481 GKDDATMEEITRAAKLS--E-----AMSFISNLPERFETQVGERGIQLSGGQ--------KQRIAISRAIVKNPSILLLD 545 (876)
Q Consensus 481 g~~~~~~~~v~~a~~~a--~-----~~~~i~~lp~G~~T~vGe~G~~LSGGQ--------kQRIaiARAl~~~p~IllLD 545 (876)
.+.-...|.... + ..|-+.++|+++++.+|+.|.++|||| |||+++||++.++++|.+|
T Consensus 88 -----~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 -----AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred -----HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 011111111111 1 124577899999999999999999999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHH
Q 002817 546 EATSALDAESENS-VQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 546 E~tSaLD~~te~~-i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
||+++|+.++.. ++ ++.+. .++|.|+++|||++..++|.|.||++|++ |++++.. ++.|+.+++.+.
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~~~r~ 230 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMWLLRR 230 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHHHHHH
Confidence 999999876654 43 34443 67999999999999999999999999998 8899976 778888876654
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=9.5e-21 Score=203.74 Aligned_cols=178 Identities=26% Similarity=0.442 Sum_probs=136.9
Q ss_pred eEEEECCCCCCCccccceeEEec-----CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 386 DVSFCYPSRPDVAIFDKFCLDIP-----AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 386 ~vsf~y~~~~~~~vL~~isl~i~-----~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
+.-++|++- ...+.++.|+++ .||.++++||+|-||||++++|.|..+|++|+ ..++ +|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 444566532 234667777765 56789999999999999999999999999998 3333 59
Q ss_pred EEEeccC-CCccccHHHHHHcCCCC-CC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 461 GLVNQEP-ALFATTIRENILYGKDD-AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 461 ~~V~Q~~-~Lf~~TIreNI~~g~~~-~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
+|=||-- .-|+|||++=+.-..+. .. ..|+.+ |-.++-....+-.+||||+-||+|||-|
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~--------------pl~l~~i~e~~v~~LSGGELQRvaIaa~ 469 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK--------------PLNLEDLLERPVDELSGGELQRVAIAAA 469 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC--------------ccchHHHHhcccccCCchhHHHHHHHHH
Confidence 9999953 23899999876543322 11 122222 2222333333445899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeC
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~ 593 (876)
|.+++|+||||||.+.||.+..-.+-++|++.. .++|.++|-|++-.+.. +||++|.+.
T Consensus 470 L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred hccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999999999999988899998864 57899999999999987 999999974
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.4e-21 Score=210.59 Aligned_cols=201 Identities=25% Similarity=0.339 Sum_probs=137.7
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
..+|..+|.+.+|.+ +..|++-++++..|..+++|||+|+|||||+++|.. |.|.+-.++ +.+|.
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheec
Confidence 357999999999974 458999999999999999999999999999999997 333221110 00000
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCC----CCHHHHHH-HHHHHhhhhhHhcCchhhhhhhcCC-CCCCCHHHHHHHHHH
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDD----ATMEEITR-AAKLSEAMSFISNLPERFETQVGER-GIQLSGGQKQRIAIS 532 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~----~~~~~v~~-a~~~a~~~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRIaiA 532 (876)
--....| ..+-.+|-|.-...-.+. .+.+|+.. +++-. |+..+.-++ -..||||=|-|+|||
T Consensus 143 ~~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl-----------GFt~emq~~pt~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 143 DDTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL-----------GFTPEMQLQPTKSLSGGWRMRLALA 210 (582)
T ss_pred cchHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-----------CCCHHHHhccccccCcchhhHHHHH
Confidence 0000111 112222333322221100 02222222 21111 333333333 258999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEE-EecChhHHhcC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELISN 608 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~~~ 608 (876)
||+.++||||||||||..||..+-.-+.+-|..+ ..|+|+|+|+-+++.. |.-||-+++-|+- ..|++++..+.
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 9999999999999999999999999888888775 3899999999999987 8889998887663 46777776654
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=3.4e-20 Score=191.75 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=118.0
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCC---cccc----
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATT---- 473 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L---f~~T---- 473 (876)
+++.++..+| +.+|+||+|||||||+.+|.-..-...... + +.-..+.+.+ .=.++.++ |+..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~---~---r~~~~~~~i~---~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL---G---RAKKVGEFVK---RGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc---c---cccCHHHHhh---CCCCcEEEEEEEEeCCCcc
Confidence 4555665554 678999999999999998865442111100 0 0111111111 00111111 1111
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH----HccCCCEEEEeCCCC
Q 002817 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA----IVKNPSILLLDEATS 549 (876)
Q Consensus 474 IreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA----l~~~p~IllLDE~tS 549 (876)
..+|+.+- .+.+.+.+++.+... |.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23343321 355677777777666 6667788776543 55778999999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC--C-CeEEEEcCCchhh-hhcC--EEEEEeCCe
Q 002817 550 ALDAESENSVQEALDRVMV--G-RTTVVVAHRLSTI-RNAD--VIAVVQGRK 595 (876)
Q Consensus 550 aLD~~te~~i~~~l~~~~~--~-~T~I~ItHrls~i-~~aD--~Iivl~~G~ 595 (876)
+||+.+.+.+.+.+.+..+ + .|+|+|||++..+ ..+| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999987753 3 4799999998654 4465 778888775
No 399
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=4.1e-20 Score=222.25 Aligned_cols=206 Identities=24% Similarity=0.373 Sum_probs=172.4
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC---CccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc-c
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-T 472 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p---~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~-~ 472 (876)
..+|+|++.-++||+.+-+.||.|||||||+++|.|-.+- ..|+|..||+|.+++.. ++.++|++|+.+-|. -
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4689999999999999999999999999999999998764 35699999999999888 889999999988775 5
Q ss_pred cHHHHHHcCC----C-----CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC-CCCCHHHHHHHHHHHHHccCCCEE
Q 002817 473 TIRENILYGK----D-----DATMEEITRAAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSIL 542 (876)
Q Consensus 473 TIreNI~~g~----~-----~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G-~~LSGGQkQRIaiARAl~~~p~Il 542 (876)
||||-+-|.. | +.+.+|-.++. ...+.+ +-.|.+..||.||... ...|||||.|+++|-+++.+|+++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~-~d~~lk-ilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAM-TDYLLK-ILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHH-HHHHHH-HhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 9999998863 3 22222322111 111111 3467889999999765 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCch--hhhhcCEEEEEeCCeEEEecChhHHhc
Q 002817 543 LLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS--TIRNADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 543 lLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls--~i~~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
.+||+|-+||+.|.-++.++|+++. -+.|.++.=|+.+ +..-.|+|++|.+|+++.+|+.++.+.
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999999999999999999999864 3778888888876 577799999999999999999999863
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.9e-19 Score=194.25 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 520 QLSGGQKQRIAISRAIVK----NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~~----~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
.||||||||++|||+++. +|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998888899999999999988999999999874
Q ss_pred E
Q 002817 596 I 596 (876)
Q Consensus 596 I 596 (876)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 401
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=2e-19 Score=175.20 Aligned_cols=211 Identities=23% Similarity=0.341 Sum_probs=164.5
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCeeCCCCCHHHHhcc----eEEEeccCC
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKWLRQQ----IGLVNQEPA 468 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~----p~~G~I~idG~di~~~~~~~lr~~----i~~V~Q~~~ 468 (876)
..+.+++|++...||.-++||+||||||-+.+.|+|-.+ .+.-+..+|+.|+-.++++.-|+- |++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 457899999999999999999999999999999999864 456677889999999999888764 678999996
Q ss_pred Cc-c--cc----HHHHHHcCC-C-------CCCHHHHHHHHHHHhh--hhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 469 LF-A--TT----IRENILYGK-D-------DATMEEITRAAKLSEA--MSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 469 Lf-~--~T----IreNI~~g~-~-------~~~~~~v~~a~~~a~~--~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
-. + .+ +-+||-+.. . .-...+.++.+..+++ |+.|+. .-...|-.|+-|.+.|
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~----------SYP~ElTeGE~QKVMI 169 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR----------SYPYELTEGECQKVMI 169 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH----------hCcchhccCcceeeee
Confidence 43 2 23 345553221 0 0112334444444443 333322 1234566688899999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|-|+..+|++||-||||.++|+.|..+|...+.++. +|.|+++++|++.++.. ||+|-||--|+-+|++.-++|++.
T Consensus 170 A~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~ 249 (330)
T COG4170 170 AIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249 (330)
T ss_pred ehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcC
Confidence 999999999999999999999999999998887664 46789999999999866 999999999999999999999998
Q ss_pred CCchHHHHH
Q 002817 609 PNSAYAALV 617 (876)
Q Consensus 609 ~~g~y~~l~ 617 (876)
++-.|.+-.
T Consensus 250 PhHPYTqAL 258 (330)
T COG4170 250 PHHPYTQAL 258 (330)
T ss_pred CCCchHHHH
Confidence 777776543
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=3.7e-19 Score=182.94 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=110.0
Q ss_pred ccceeEEecCCC-EEEEEcCCCccHHHHHHHHH--------cCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc
Q 002817 400 FDKFCLDIPAGK-IVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF 470 (876)
Q Consensus 400 L~~isl~i~~G~-~vaiVG~sGsGKSTll~lL~--------~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf 470 (876)
..++||++++|+ .++|+||+||||||+++.|. |.+-|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457999999996 69999999999999999988 6555542211 2444444311
Q ss_pred cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 002817 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (876)
Q Consensus 471 ~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSa 550 (876)
.++ .+..+.++-.++|+|+|||..|++++ .+|+++++||||++
T Consensus 78 --------~lg----------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 78 --------DIG----------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred --------ecC----------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 111 11112233468999999999999995 89999999999999
Q ss_pred CCHHHHHHHH-HHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 551 LDAESENSVQ-EALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 551 LD~~te~~i~-~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
+|+.....+. ..++.+. .+.|+|++||.....+.+|++++|++|++...
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 9999888774 4566554 47899999999777788999999999999865
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=3.1e-18 Score=216.77 Aligned_cols=209 Identities=19% Similarity=0.259 Sum_probs=142.6
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHH------cC---CCCCccEEEECCeeCCCCC----------HHHHhcce
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIE------RF---YEPLSGEILLDGNNIKGLD----------LKWLRQQI 460 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~------~~---~~p~~G~I~idG~di~~~~----------~~~lr~~i 460 (876)
|+|++.+||-|.+++|.|.||||||||++=.+ .+ .+.-+--|.||-.+|..-+ .+.+|+-.
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lF 1585 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNFY 1585 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHH
Confidence 89999999999999999999999999997544 11 1223344777766664332 23344443
Q ss_pred EEEec------cC--CCcc------------ccHHHHHHcCCC-----------------------CCCHHH-----HHH
Q 002817 461 GLVNQ------EP--ALFA------------TTIRENILYGKD-----------------------DATMEE-----ITR 492 (876)
Q Consensus 461 ~~V~Q------~~--~Lf~------------~TIreNI~~g~~-----------------------~~~~~~-----v~~ 492 (876)
|=.|+ .| +=|| |.|+=++.|-.+ ..+-.| |.+
T Consensus 1586 A~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~e 1665 (1809)
T PRK00635 1586 ASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEE 1665 (1809)
T ss_pred hcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHH
Confidence 32111 11 1111 011111111100 000111 122
Q ss_pred HHH-------HHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHH
Q 002817 493 AAK-------LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN---PSILLLDEATSALDAESENSVQEA 562 (876)
Q Consensus 493 a~~-------~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~---p~IllLDE~tSaLD~~te~~i~~~ 562 (876)
|++ ...-.+.+..+--||-+ +|+.-.+|||||.|||-||.-|.++ +.+|||||||.+|+++.-+.+.+.
T Consensus 1666 a~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~ 1744 (1809)
T PRK00635 1666 VAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 (1809)
T ss_pred HHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 211 11122223333346654 5899999999999999999999976 789999999999999988888888
Q ss_pred HHHh-cCCCeEEEEcCCchhhhhcCEEEEEe------CCeEEEecChhHHhcCC
Q 002817 563 LDRV-MVGRTTVVVAHRLSTIRNADVIAVVQ------GRKIVKTGSHEELISNP 609 (876)
Q Consensus 563 l~~~-~~~~T~I~ItHrls~i~~aD~Iivl~------~G~Ive~Gt~~eL~~~~ 609 (876)
++++ .+|.|+|+|-|++..++.||+|+-|. .|+|+.+||++|+.+.+
T Consensus 1745 l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1745 LRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 8887 46899999999999999999999994 68999999999998763
No 404
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.78 E-value=3e-18 Score=166.75 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=160.2
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC-CC-----
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-LD----- 452 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~-~~----- 452 (876)
+..|++.+..|+|+.. .|+.-|+|+++|.|...-+||.+|||||||+++|.|-.-...|.|.+.|.+-=. -.
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4589999999999854 378999999999999999999999999999999999988888999999975321 11
Q ss_pred -----HHHHhcceEEEeccCCCccccHHHHHHcCCCCC---CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH
Q 002817 453 -----LKWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (876)
Q Consensus 453 -----~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~---~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG 524 (876)
-.+|++..+..- |.-|.-+-=.+-+.||-... +.|++++. +|-.+-=|-..+|-|
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~i----------------LDIdl~WRmHkvSDG 151 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDI----------------LDIDLRWRMHKVSDG 151 (291)
T ss_pred ceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhh----------------eeccceEEEeecccc
Confidence 234566666555 33344332234455654222 22222221 222333455789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecC
Q 002817 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 525 QkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt 601 (876)
||.|+.|+-.|++.=++|+|||-|--||......+.+-+++.. ++.|++..||=-.-+.. +.+++.|.+|+++..-.
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 9999999999999999999999999999999999998887653 68899999999887765 99999999999998666
Q ss_pred hhHH
Q 002817 602 HEEL 605 (876)
Q Consensus 602 ~~eL 605 (876)
+++.
T Consensus 232 ~~~i 235 (291)
T KOG2355|consen 232 YQKI 235 (291)
T ss_pred cchh
Confidence 5544
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.6e-18 Score=195.78 Aligned_cols=95 Identities=33% Similarity=0.582 Sum_probs=88.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p---~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Ii 589 (876)
+|..-.+||||+.|||-||.-|.+.+ -+|||||||.+|-.+--+++.+.|.++. +|.|+|+|-|.|..|+.||+|+
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEE
Confidence 58888999999999999999999988 9999999999999998888888888764 7999999999999999999999
Q ss_pred EE------eCCeEEEecChhHHhcC
Q 002817 590 VV------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 590 vl------~~G~Ive~Gt~~eL~~~ 608 (876)
=| +.|+|+.+||++|+.+.
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHhC
Confidence 98 47999999999999876
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=3.1e-18 Score=182.28 Aligned_cols=200 Identities=28% Similarity=0.448 Sum_probs=150.4
Q ss_pred CCCcccEEEEeEEEECCCCC-----------------------CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 376 DKLSGHIEFKDVSFCYPSRP-----------------------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 376 ~~~~~~I~~~~vsf~y~~~~-----------------------~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
+..++.+.|+|++-.+.+.. +..+|+|+||+|+||+.++|||+|||||||++.+|+|
T Consensus 352 e~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 352 EKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred cccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence 34556788999888764311 2368999999999999999999999999999999998
Q ss_pred C--------CCCCccEEEECCeeCCCCCHHHHhcceEEEec--cCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhh
Q 002817 433 F--------YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502 (876)
Q Consensus 433 ~--------~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q--~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~ 502 (876)
+ |.|++|.|.+--..+ -+.+|- ||.+=.-||-|-+. ...-+...-.+.+..+++.|-
T Consensus 432 ~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep~f~~~tilehl~--s~tGD~~~AveILnraGlsDA 498 (593)
T COG2401 432 AQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEPEFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDA 498 (593)
T ss_pred HhhcccccccCCCCCceeccccch-----------hhccCcccccccCchhHHHHHh--hccCchhHHHHHHHhhccchh
Confidence 6 789999998754322 233333 34433347777653 211122223455555665442
Q ss_pred HhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCch
Q 002817 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS 580 (876)
Q Consensus 503 i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls 580 (876)
+. |. ..-..||-|||-|..||+++...|.+++-||.-|.||..|...+-+.|.++. .+.|.++||||.+
T Consensus 499 vl-----yR----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 499 VL-----YR----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hh-----hh----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 21 11 2235799999999999999999999999999999999999999998888876 6899999999999
Q ss_pred hhhh--cCEEEEEeCCeEE
Q 002817 581 TIRN--ADVIAVVQGRKIV 597 (876)
Q Consensus 581 ~i~~--aD~Iivl~~G~Iv 597 (876)
.+.. -|+++.+.=|++.
T Consensus 570 v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 570 VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHhccCCceeEEeeccccc
Confidence 8876 5999888777654
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.75 E-value=4.6e-18 Score=183.28 Aligned_cols=190 Identities=22% Similarity=0.375 Sum_probs=136.5
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCCCHH
Q 002817 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLDLK 454 (876)
Q Consensus 386 ~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~-----------idG~di~~~~~~ 454 (876)
++.-+|..+ ...|..+- ..++|+.++|+||+|-||||.++.|.|...|.=|+-. +.|..+.++=.+
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 466677532 22333332 4679999999999999999999999999999877531 112222111110
Q ss_pred H----Hh--cceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 455 W----LR--QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 455 ~----lr--~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
- +| .++-||--=|-.+.|+++|=+.--...-..+|+.+-..+.++ +...-..||||+-||
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nv--------------l~r~v~~LSGGELQr 221 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENV--------------LDRDVSELSGGELQR 221 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhh--------------hhhhhhhcCchHHHH
Confidence 0 11 123455445777888888876543333345555555444443 333446899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhhh-cCEEEEEe
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQ 592 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~-aD~Iivl~ 592 (876)
+|||-|+.|++|+|++|||||-||....-..-+.|+++.+ +|++|+|-|+|..+.. +|.|-++-
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999988888888988877 6999999999999987 89887775
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=1.1e-17 Score=165.98 Aligned_cols=135 Identities=24% Similarity=0.341 Sum_probs=99.1
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE-EeccCCCccccHHHHHHcCC
Q 002817 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL-VNQEPALFATTIRENILYGK 482 (876)
Q Consensus 404 sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~-V~Q~~~Lf~~TIreNI~~g~ 482 (876)
++.+.+|..+.|+||+||||||+++.+.-..-..+|.+.... ++ +.++ +++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344555679999999999999999997654444444433311 00 1111 22221111
Q ss_pred CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHH
Q 002817 483 DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK----NPSILLLDEATSALDAESENS 558 (876)
Q Consensus 483 ~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~----~p~IllLDE~tSaLD~~te~~ 558 (876)
+ -+. .+|||||+||++|||++.. +|+++|||||++++|++....
T Consensus 72 --------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 000 1299999999999999986 789999999999999999999
Q ss_pred HHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 559 VQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 559 i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
+.+.+.+.. ++.|+|++||+++....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 988887764 35899999999999999999999974
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.3e-16 Score=171.76 Aligned_cols=190 Identities=18% Similarity=0.242 Sum_probs=123.2
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-----------------------------------------Cc
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----------------------------------------LS 438 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-----------------------------------------~~ 438 (876)
+++.++++.+| .++|+||+||||||++.+|.-.... ..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34566777776 6889999999999999886533210 01
Q ss_pred cEEEECCeeCCC-CCHHHHhcceEEEeccCCCccccHHHHHHcCC-----CCCCH----HHHHHHHHHHhhhhhHhcCch
Q 002817 439 GEILLDGNNIKG-LDLKWLRQQIGLVNQEPALFATTIRENILYGK-----DDATM----EEITRAAKLSEAMSFISNLPE 508 (876)
Q Consensus 439 G~I~idG~di~~-~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~-----~~~~~----~~v~~a~~~a~~~~~i~~lp~ 508 (876)
..+.+||..++. -++..+-..|.+.|++..|+.++-.+-..|-. -+..+ ++..++.+.-+. +.+-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~---~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNA---LLKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH---HhCCCC
Confidence 134567766654 22233344566777777788543332222211 11122 233333332222 222477
Q ss_pred hhhhhhcCCCC----CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Q 002817 509 RFETQVGERGI----QLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575 (876)
Q Consensus 509 G~~T~vGe~G~----~LSGGQkQRIaiARAl~---------~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~I 575 (876)
.++..+.-++. .+|+||||+++|||++. ++|+++||||||++||+...+.+.+.+.+.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 76666654444 38999999999999974 7999999999999999999999999987652 45566
Q ss_pred cCCchhhhh-c---CEEEEEeCCeE
Q 002817 576 AHRLSTIRN-A---DVIAVVQGRKI 596 (876)
Q Consensus 576 tHrls~i~~-a---D~Iivl~~G~I 596 (876)
+|....+.. | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 665555443 4 78999999986
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=4.6e-17 Score=169.44 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=112.1
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE-EEeccCCCccccHH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG-LVNQEPALFATTIR 475 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~-~V~Q~~~Lf~~TIr 475 (876)
..+.+|+++++++|+.++|.||+||||||+++.+.- -.+..++| +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 468899999999999999999999999999999881 13344566 7777642211 11
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCC
Q 002817 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI--VKNPSILLLDEA---TSA 550 (876)
Q Consensus 476 eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl--~~~p~IllLDE~---tSa 550 (876)
|+| +..+... |.. ..++|.|++|+..+|+++ +.+|+++||||| |++
T Consensus 74 ~~i------------------------l~~~~l~-d~~----~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~ 124 (222)
T cd03285 74 DCI------------------------LARVGAS-DSQ----LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTST 124 (222)
T ss_pred cee------------------------Eeeeccc-cch----hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCCh
Confidence 111 1111111 111 357999999999999999 899999999999 999
Q ss_pred CCHHHHHHH-HHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecC
Q 002817 551 LDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 551 LD~~te~~i-~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt 601 (876)
+|....... .+.+.+ .+++|+|++||..+..+.||++..+++|++...++
T Consensus 125 lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 125 YDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999866433 355543 34789999999755556699999999999987654
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.68 E-value=3.7e-17 Score=147.40 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=72.2
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHH
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIREN 477 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreN 477 (876)
++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999987 89999999999999999999999999998 999999999
Q ss_pred HHc
Q 002817 478 ILY 480 (876)
Q Consensus 478 I~~ 480 (876)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 988
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=2.2e-16 Score=192.35 Aligned_cols=95 Identities=32% Similarity=0.526 Sum_probs=87.9
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p--~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 590 (876)
.+....+|||||+|||+|||||..+| ++|||||||++||++..+.+.+.|+++. +|+|+|+|+|+++.++.||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46677899999999999999999986 8999999999999999999999998874 48899999999999999999999
Q ss_pred E------eCCeEEEecChhHHhcC
Q 002817 591 V------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 591 l------~~G~Ive~Gt~~eL~~~ 608 (876)
| ++|+|+++|+.+++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998654
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.67 E-value=2.6e-16 Score=192.05 Aligned_cols=95 Identities=33% Similarity=0.525 Sum_probs=87.9
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p--~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 590 (876)
.+..-.+|||||||||+|||||..+| ++|||||||++||++..+.+.+.|+++. +|.|+|+|+|+++.+..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 45567799999999999999999997 9999999999999999999999998875 48999999999999999999999
Q ss_pred E------eCCeEEEecChhHHhcC
Q 002817 591 V------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 591 l------~~G~Ive~Gt~~eL~~~ 608 (876)
| ++|+|+.+|+.+|+.+.
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998764
No 414
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.8e-15 Score=167.92 Aligned_cols=178 Identities=20% Similarity=0.331 Sum_probs=144.1
Q ss_pred cchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHL 760 (876)
Q Consensus 681 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~ 760 (876)
....++++.+.+|+|+++..|.++.++.......+=...++++..++... .............+++.++..++.+++.+
T Consensus 132 ~~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~-~~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 132 HTLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD-DSADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hhHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999887766655443332222233455555444311 11223333456666777778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 761 SFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNW 840 (876)
Q Consensus 761 ~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~ 840 (876)
++.+++++...++|..+|++++||+++||| .|-+|.|++|+++|+..+.+.++..++..+.++.++++++..+++.+|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 002817 841 RITLVVVATYPLIISGHIKTL 861 (876)
Q Consensus 841 ~l~lv~l~~~pl~~~~~~~~~ 861 (876)
+++++.+..+|++.+...+.-
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG 309 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYG 309 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHH
Confidence 999999999999988766443
No 415
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=5.7e-16 Score=199.68 Aligned_cols=118 Identities=24% Similarity=0.300 Sum_probs=105.6
Q ss_pred CccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH------HHHHHHHHccCCCEE
Q 002817 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ------RIAISRAIVKNPSIL 542 (876)
Q Consensus 469 Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ------RIaiARAl~~~p~Il 542 (876)
.|+||++|||.+ +|+++++ ..|++.+++++|+..+|.| ||.++.+| .||||||| |++||||++.+|+||
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 599999999999 8888776 7899999999999999999 99999887 89999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEcCCchhhhh------cCEEEEE
Q 002817 543 LLDEATSALDAESENSVQEALDRVM------VGRTTVVVAHRLSTIRN------ADVIAVV 591 (876)
Q Consensus 543 lLDE~tSaLD~~te~~i~~~l~~~~------~~~T~I~ItHrls~i~~------aD~Iivl 591 (876)
+|||||++||+.+...+.+.|..+. .|.|+|+|||++..+.. +|+.+-+
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 9999999999999999988887652 36899999999998764 4555544
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.63 E-value=8.6e-16 Score=158.28 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=102.4
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcC
Q 002817 403 FCLDIPAGKIVALVGGSGSGKSTVISLIER-FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG 481 (876)
Q Consensus 403 isl~i~~G~~vaiVG~sGsGKSTll~lL~~-~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g 481 (876)
.++++.+|++++|+||+||||||+++.|.+ .+.+..|...- + .+..+++..|.-.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~------------- 77 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFT------------- 77 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEE-------------
Confidence 445666899999999999999999999993 22222221100 0 0112333222111
Q ss_pred CCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 002817 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561 (876)
Q Consensus 482 ~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~ 561 (876)
.++... .+-++-..+++++|| ++.+.+...+|+++||||||+++|+.....+..
T Consensus 78 -----------------------~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 78 -----------------------RIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred -----------------------EecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 111110 112223456666665 666677789999999999999999987776644
Q ss_pred H-HHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHH
Q 002817 562 A-LDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 562 ~-l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
. ++.+. .+.|+|++||+.+.++.+|++..+++|++.++++.+++
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 3 44332 47899999999999999999999999999988765443
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.63 E-value=3.8e-16 Score=159.84 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=95.4
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc-cccHH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIR 475 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TIr 475 (876)
.+|++|++++. |+.++|+|||||||||+++.|.+... +..+|.++.. -.++.|...+| +.|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccch
Confidence 35788887665 79999999999999999999987442 1235655532 13566755555 56999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 002817 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (876)
Q Consensus 476 eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~t 555 (876)
||+.+|... ..++..++ .+.++.+. .++|+++|+||||+++|+..
T Consensus 78 d~l~~~~s~-~~~e~~~~------~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~ 122 (199)
T cd03283 78 DDLRDGISY-FYAELRRL------KEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRE 122 (199)
T ss_pred hccccccCh-HHHHHHHH------HHHHHhcc----------------------------CCCCeEEEEecccCCCCHHH
Confidence 999987632 22333222 22222221 07999999999999999998
Q ss_pred HHHHHH-HHHHh-cCCCeEEEEcCCchhhhhc
Q 002817 556 ENSVQE-ALDRV-MVGRTTVVVAHRLSTIRNA 585 (876)
Q Consensus 556 e~~i~~-~l~~~-~~~~T~I~ItHrls~i~~a 585 (876)
...+.. .++.+ .++.|+|++||++..+...
T Consensus 123 ~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 123 RQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 776643 45544 3478999999999876554
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=2.4e-15 Score=159.92 Aligned_cols=142 Identities=18% Similarity=0.276 Sum_probs=106.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC-HHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHH
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~-~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~ 489 (876)
+.++|+||+||||||+++.|.|++.|++|+|.++|.++..++ ..+++..++++||...--..++.||- +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h------
Confidence 689999999999999999999999999999999999998775 56888889999996532223444431 1
Q ss_pred HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 002817 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569 (876)
Q Consensus 490 v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~ 569 (876)
.+. | -..++||. +|+++|+|||++ +..+...++.+..|
T Consensus 182 ------k~~----------~------------------~~~~i~~~--~P~villDE~~~------~e~~~~l~~~~~~G 219 (270)
T TIGR02858 182 ------KAE----------G------------------MMMLIRSM--SPDVIVVDEIGR------EEDVEALLEALHAG 219 (270)
T ss_pred ------HHH----------H------------------HHHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHHhCC
Confidence 110 0 14566664 999999999974 23344444444579
Q ss_pred CeEEEEcCCchh--h------------hhcCEEEEEeCCeEEEecChhHHh
Q 002817 570 RTTVVVAHRLST--I------------RNADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 570 ~T~I~ItHrls~--i------------~~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+|+|+++|..+. + ..+||+++|++|+ ..|+.+++.
T Consensus 220 ~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 220 VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 999999997655 3 3479999999987 777776654
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.53 E-value=1.8e-13 Score=153.10 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh---cC
Q 002817 519 IQLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN---AD 586 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~---------~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~---aD 586 (876)
..+|+||+|+++||+++. ++|||+|||||+|.||++....+.+.+.+. +.++++.||.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 799999999999999999999998888653 4588999998876544 56
Q ss_pred EEEEEeCCeE
Q 002817 587 VIAVVQGRKI 596 (876)
Q Consensus 587 ~Iivl~~G~I 596 (876)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 420
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.9e-14 Score=153.84 Aligned_cols=197 Identities=24% Similarity=0.365 Sum_probs=138.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
+|.++|.+.+-.+ ...+.|.||.|-.|..+++|||+|-|||||++-|.-- --|..=.
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID------------------ 322 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID------------------ 322 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc------------------
Confidence 4777777766542 3477899999999999999999999999999998732 1222111
Q ss_pred ceEEEeccCCCccccHHHHHHcCC---------------------CCC--CHHHHHHHHH-------HHhhhhhHhcCch
Q 002817 459 QIGLVNQEPALFATTIRENILYGK---------------------DDA--TMEEITRAAK-------LSEAMSFISNLPE 508 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~---------------------~~~--~~~~v~~a~~-------~a~~~~~i~~lp~ 508 (876)
+-|+.|+..-=+.|--+-|+-.. ..+ ..+++.+-++ .+.+...+..|
T Consensus 323 -vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL-- 399 (807)
T KOG0066|consen 323 -VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL-- 399 (807)
T ss_pred -eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc--
Confidence 45666666555544444443221 000 0111111111 12222233333
Q ss_pred hhhhhhcCCC-CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cC
Q 002817 509 RFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-AD 586 (876)
Q Consensus 509 G~~T~vGe~G-~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD 586 (876)
|++-+.-+|. ..+|||=|-||+|||||+-.|-+|.|||||.+||-..--.+.+.|..+ .+|.++|+|+-.++.+ |.
T Consensus 400 GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 400 GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHH
Confidence 6777777776 479999999999999999999999999999999998777777777776 5899999999999988 99
Q ss_pred EEEEEeCCeEE-EecChh
Q 002817 587 VIAVVQGRKIV-KTGSHE 603 (876)
Q Consensus 587 ~Iivl~~G~Iv-e~Gt~~ 603 (876)
.||.||+-+.- ..|+|.
T Consensus 478 dIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 478 DIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHhhhhhhhhhhhcchHH
Confidence 99999998774 356653
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=4.2e-14 Score=146.75 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=102.0
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCeeCCCCCHHHHhcceEEEeccCCCc-cccH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTI 474 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TI 474 (876)
..+.+|+++++++ ++++|+||+||||||+++.+.+..-. ..|. + ....+.+++++.| +| +-++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~-----vp~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------F-----VPASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------e-----eccccceecceee---EeccCCc
Confidence 3578999999887 99999999999999999999764311 1111 1 1111235677655 33 2355
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CC
Q 002817 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI--VKNPSILLLDEA---TS 549 (876)
Q Consensus 475 reNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl--~~~p~IllLDE~---tS 549 (876)
+||+..|... =...+..+++++ ..+|+++||||| |+
T Consensus 83 ~~~ls~g~s~---------------------------------------f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 83 SDDLAGGRST---------------------------------------FMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hhhhccCcch---------------------------------------HHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 6666554210 011122344443 469999999999 99
Q ss_pred CCCHHH-HHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHH
Q 002817 550 ALDAES-ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 550 aLD~~t-e~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++|... ...+.+.+.+. .+.|+|++||..+....+|++--+++|++...++-+++
T Consensus 124 ~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999865 23344444332 37899999999877777898878899998877665554
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=1.1e-13 Score=141.97 Aligned_cols=140 Identities=18% Similarity=0.161 Sum_probs=98.1
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE-EEeccCCCccccHH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG-LVNQEPALFATTIR 475 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~-~V~Q~~~Lf~~TIr 475 (876)
..+.+|++|++++|+.++|.|||||||||+++.+.+.. +..++| +||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46899999999999999999999999999999998763 222333 222211 122555
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 002817 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (876)
Q Consensus 476 eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~t 555 (876)
|||... ++.+. .+.++-.++|+|+||+ +.+-++..+|+++|||||++++|+..
T Consensus 73 d~I~~~------------------------~~~~d--~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 73 NRLLSR------------------------LSNDD--SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred hheeEe------------------------cCCcc--ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 665321 11111 2334557899999975 45555778999999999999999976
Q ss_pred HHHH-HHHHHHhc-CCCeEEEEcCCchhhhhcC
Q 002817 556 ENSV-QEALDRVM-VGRTTVVVAHRLSTIRNAD 586 (876)
Q Consensus 556 e~~i-~~~l~~~~-~~~T~I~ItHrls~i~~aD 586 (876)
...+ .+.++.+. .++++|++||..+.++.++
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 5554 44444433 4889999999999876543
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.49 E-value=6.7e-14 Score=146.30 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHH----HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEe
Q 002817 520 QLSGGQKQRIAIS----RAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (876)
Q Consensus 520 ~LSGGQkQRIaiA----RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 592 (876)
.||||||-+++|| ..-+.++|++||||+.++||......+.+.|++..++.-+|++||+-.....||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999987 444678999999999999999999999999999888899999999999999999987653
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.47 E-value=2.6e-13 Score=145.56 Aligned_cols=182 Identities=26% Similarity=0.430 Sum_probs=134.7
Q ss_pred EEECCCCCCCccccceeEEecCCC-----EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 388 SFCYPSRPDVAIFDKFCLDIPAGK-----IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 388 sf~y~~~~~~~vL~~isl~i~~G~-----~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
.++||+ .+..+.+..|.|+.|+ .+...|++|-||||+++++.|..+|++|. ++..++ |+|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~ln-------VSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLN-------VSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccccc-------eec
Confidence 366774 3456889999999996 57889999999999999999999998762 333333 888
Q ss_pred EeccCC-CccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 463 VNQEPA-LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 463 V~Q~~~-Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
=||.-- =|.+|+|+-+. +.++.+..--+....+.+ |-..+..++..-.+||||+.||+|||-++=+.+|+
T Consensus 407 kpqkispK~~~tvR~ll~--------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLLH--------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccccCccccchHHHHHH--------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 888643 47889887542 222222222221111221 33334445556679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEcCCchhhhh-cCEEEEEeC
Q 002817 542 LLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQG 593 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrls~i~~-aD~Iivl~~ 593 (876)
|+.|||.+-||++.+..--+.+++. ..+||-.+|-|.+-..-. |||++|.+.
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999999999887777777663 457999999999876644 999999874
No 425
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.47 E-value=7.9e-14 Score=166.47 Aligned_cols=105 Identities=25% Similarity=0.389 Sum_probs=89.8
Q ss_pred HHHHHHHHhhhhhHhcCchhhhhhhcCCC------CCCCHHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCC
Q 002817 490 ITRAAKLSEAMSFISNLPERFETQVGERG------IQLSGGQKQRIAISRAIV----------KNPSILLLDEAT-SALD 552 (876)
Q Consensus 490 v~~a~~~a~~~~~i~~lp~G~~T~vGe~G------~~LSGGQkQRIaiARAl~----------~~p~IllLDE~t-SaLD 552 (876)
+.+.++..+ .++...+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++||
T Consensus 433 ~~~~L~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIME-ADYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhh-eeEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 334444333 2555578999999999999 789999999999999887 599999999998 7899
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC-CeE
Q 002817 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG-RKI 596 (876)
Q Consensus 553 ~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~-G~I 596 (876)
+.+...+.+.|.++ +++|+|+|||+......||++++|++ |+.
T Consensus 512 ~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 512 AEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 99999999999988 78999999999998889999999986 543
No 426
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.33 E-value=2.3e-11 Score=137.72 Aligned_cols=177 Identities=21% Similarity=0.286 Sum_probs=120.6
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC---CeeCCC-----CCHHHHhcceEEEeccCC
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD---GNNIKG-----LDLKWLRQQIGLVNQEPA 468 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~id---G~di~~-----~~~~~lr~~i~~V~Q~~~ 468 (876)
..+++++ |++++|++++|+|++|+|||||+++|.|+++|+.|.|.+. |.++++ ++.+.+++.|.+|++-.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 3579999 9999999999999999999999999999999999999995 555553 45667889999997521
Q ss_pred CccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCC-HHHHHH-HHHHHHHccCCCEEEEeC
Q 002817 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS-GGQKQR-IAISRAIVKNPSILLLDE 546 (876)
Q Consensus 469 Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LS-GGQkQR-IaiARAl~~~p~IllLDE 546 (876)
+...+++..+.......|+... +|.|-.+=-. +|+ =-|-|| |++ ...+||
T Consensus 224 ---------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--sltr~A~A~rEisl---~~ge~P------ 275 (438)
T PRK07721 224 ---------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVTRVAMAQREIGL---AVGEPP------ 275 (438)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChHHHHHHHHHHHH---hcCCCC------
Confidence 1112222222222222233332 2443322110 111 001111 111 112343
Q ss_pred CCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEcCCchhhhhcCEEEEEeCCeEEEecChhH
Q 002817 547 ATSALDAESENSVQEALDRVM---VGR-----TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 547 ~tSaLD~~te~~i~~~l~~~~---~~~-----T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 604 (876)
.|+++|+.....+.+.++++. +|. |+++.+|+++. .-||++.++.+|+|+..|+..+
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 689999999998888887765 465 99999999996 7799999999999999988654
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=3.4e-12 Score=132.94 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEAT-----SALDAESENSVQEALDRVM 567 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~t-----SaLD~~te~~i~~~l~~~~ 567 (876)
-|+|++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 4999999999999999999999999 9999999999999988753
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=7.2e-12 Score=148.48 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCC
Q 002817 519 IQLSGGQKQRIAISRAIVKN----PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~----p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G 594 (876)
..||||||||++||||++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999975 69999999999999999999999999988899999999999999999999999987
Q ss_pred e
Q 002817 595 K 595 (876)
Q Consensus 595 ~ 595 (876)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 429
>PRK10869 recombination and repair protein; Provisional
Probab=99.26 E-value=1.3e-11 Score=145.10 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCC
Q 002817 519 IQLSGGQKQRIAISRAIVK----NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~----~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G 594 (876)
..|||||+|||+|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||+++.+..||++++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3799999999999999996 689999999999999999999999999988889999999999999999999999876
Q ss_pred e
Q 002817 595 K 595 (876)
Q Consensus 595 ~ 595 (876)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 430
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.25 E-value=1.2e-11 Score=125.49 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=56.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEcCCchhhhhcCEEE
Q 002817 515 GERGIQLSGGQKQRIAISRAIVK--NPSILLLDEATSALDAESENSV-QEALDRVM--VGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 515 Ge~G~~LSGGQkQRIaiARAl~~--~p~IllLDE~tSaLD~~te~~i-~~~l~~~~--~~~T~I~ItHrls~i~~aD~Ii 589 (876)
.++-.++|+|++| +++++.. +|+++|+|||++++|+.....+ ...++.+. .+.++|++||..+..+.+|+--
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~ 132 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHP 132 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCc
Confidence 3445688888887 4555554 9999999999999999977666 44555544 3789999999998666677533
Q ss_pred EEeCCeE
Q 002817 590 VVQGRKI 596 (876)
Q Consensus 590 vl~~G~I 596 (876)
-++++++
T Consensus 133 ~v~~~~~ 139 (185)
T smart00534 133 GVRNLHM 139 (185)
T ss_pred cceEEEE
Confidence 3344433
No 431
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=4.4e-11 Score=123.89 Aligned_cols=135 Identities=15% Similarity=0.210 Sum_probs=90.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc--cc
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER--FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TT 473 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~--~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~--~T 473 (876)
.|-+|+++.=..+..++|+||+|+||||+++.+.. .+ +..|....... -.++|..|.-.-++ .|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~-----------~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS-----------ATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC-----------cEEeeeeeeeeeeCCccC
Confidence 34456665422237999999999999999999983 33 55666543221 14777777532221 12
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 002817 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (876)
Q Consensus 474 IreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~ 553 (876)
+.+++ -|. --+-||+++|+++..+|+++|||||++++|+
T Consensus 85 i~~~~--------------------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 85 VSSGQ--------------------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred hhhcc--------------------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 22211 011 2345999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHhcC----CCeEEEEcCCchhhhhc
Q 002817 554 ESENSV-QEALDRVMV----GRTTVVVAHRLSTIRNA 585 (876)
Q Consensus 554 ~te~~i-~~~l~~~~~----~~T~I~ItHrls~i~~a 585 (876)
.....+ ...++.+.+ +.++|++||.++.++..
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 754444 556666543 24899999999987664
No 432
>PRK13695 putative NTPase; Provisional
Probab=99.22 E-value=1.2e-11 Score=124.27 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=66.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEe
Q 002817 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDE--ATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (876)
Q Consensus 515 Ge~G~~LSGGQkQRIaiARAl~~~p~IllLDE--~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~ 592 (876)
+.....+||+++-++.+++..+++|+++++|| |+..+|....+.+.++++ .++++|+++|+-..-..+|+|..+.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~ 149 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRP 149 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccC
Confidence 34455799999999999999999999999999 555666555555555552 4799999999965556799999999
Q ss_pred CCeEEEe
Q 002817 593 GRKIVKT 599 (876)
Q Consensus 593 ~G~Ive~ 599 (876)
+|+|.+.
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9999886
No 433
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.22 E-value=1.3e-09 Score=133.37 Aligned_cols=174 Identities=18% Similarity=0.346 Sum_probs=130.1
Q ss_pred chHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 682 VSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLS 761 (876)
Q Consensus 682 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~ 761 (876)
...++++++.+++++++..+.++.++.........+...+++........ .........+++++.++..++.+++.+.
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777877776655544444333322333333444433322111 1112223344555666677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 762 FGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWR 841 (876)
Q Consensus 762 ~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~ 841 (876)
+.+.+.+...++|.++|++++++|++||| .+++|.++||+++|++.++..+...+..++..+..+++++++++..+|+
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 002817 842 ITLVVVATYPLIISGHIK 859 (876)
Q Consensus 842 l~lv~l~~~pl~~~~~~~ 859 (876)
++++.++.+|+.++...+
T Consensus 303 l~l~~l~~~~l~~~~~~~ 320 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKV 320 (711)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888887766543
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.21 E-value=2.3e-10 Score=127.44 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEE
Q 002817 519 IQLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIA 589 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~---------~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Ii 589 (876)
.-+|+||+++++||+.+. .+|||+|||||+|.||.+....+.+.|.+.. .+.|..|+ .-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 457999999999999998 8999999999999999999888888875432 34444343 335689999
Q ss_pred EEeCCeEEEe
Q 002817 590 VVQGRKIVKT 599 (876)
Q Consensus 590 vl~~G~Ive~ 599 (876)
.+++|++.-+
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999988644
No 435
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.21 E-value=1.1e-09 Score=116.38 Aligned_cols=109 Identities=19% Similarity=0.368 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 751 TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTA 830 (876)
Q Consensus 751 ~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~ 830 (876)
.........+...+.+.+...++|.++++++++.|.+||| ++++|+++||+++|++.+++.+...+..++..+..+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~ 131 (275)
T PF00664_consen 54 IFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF 131 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhh
Confidence 3344444455567899999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002817 831 SFVIAFILNWRITLVVVATYPLIISGHIKTL 861 (876)
Q Consensus 831 ~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~~ 861 (876)
+++++++.+|+++++++++.|+.+.......
T Consensus 132 ~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 162 (275)
T PF00664_consen 132 SLILLFFISWKLALILLIILPLLFLISFIFS 162 (275)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhHhhhhhhc
Confidence 9999999999999999988888777655433
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.19 E-value=1.4e-10 Score=140.65 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=98.8
Q ss_pred cEEEEeEEEECCCCCCCccccc-----eeEEecCC-CEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCeeCCCCCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDK-----FCLDIPAG-KIVALVGGSGSGKSTVISLIERF-YEPLSGEILLDGNNIKGLDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~-----isl~i~~G-~~vaiVG~sGsGKSTll~lL~~~-~~p~~G~I~idG~di~~~~~ 453 (876)
.|.++++.. |++++ +|+++.+| +.++|+||+|+||||+++.+.+. +-+..|
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------- 352 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------- 352 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------
Confidence 577777654 23332 68888877 89999999999999999999987 334333
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
.+||..... .-.+.+++... .. .+-.+.++-.++|+|++|+..|++
T Consensus 353 -------~~Vpa~~~~-~~~~~d~i~~~---i~-----------------------~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 353 -------IPIPANEHS-EIPYFEEIFAD---IG-----------------------DEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred -------CCccCCccc-cccchhheeee---cC-----------------------hHhHHhhhhhHHHHHHHHHHHHHH
Confidence 144443310 00122222110 00 011123345679999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc-CCCeEEEEcCCchh
Q 002817 534 AIVKNPSILLLDEATSALDAESENSV-QEALDRVM-VGRTTVVVAHRLST 581 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i-~~~l~~~~-~~~T~I~ItHrls~ 581 (876)
++ .+|+++|||||++++|+.....+ ...++.+. ++.++|++||..+.
T Consensus 399 ~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 399 KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 87 78999999999999999988877 44555443 57899999999765
No 437
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.16 E-value=5.2e-09 Score=125.75 Aligned_cols=171 Identities=12% Similarity=0.129 Sum_probs=128.4
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (876)
Q Consensus 685 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~ 764 (876)
..++.+.+++++.+..+++++++..+..+...+.+.+++........+ ......+..+++++.++..++.+++.+....
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777766666665555555444444555554333211000 1112223344555556677788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (876)
Q Consensus 765 ~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~l 844 (876)
.+.+...++|.++|+++++.|.+||+ .+++|.+++|+++|++.++..+...+..++..++.+++.++++++++|++++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999888888888888888888889999999999
Q ss_pred HHHhHHHHHHHHHH
Q 002817 845 VVVATYPLIISGHI 858 (876)
Q Consensus 845 v~l~~~pl~~~~~~ 858 (876)
++++++|+.++...
T Consensus 168 ~~l~~~~~~~~~~~ 181 (588)
T PRK11174 168 ILLGTAPLIPLFMA 181 (588)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888776554
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.15 E-value=7.8e-11 Score=129.16 Aligned_cols=143 Identities=18% Similarity=0.225 Sum_probs=101.1
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC
Q 002817 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK 482 (876)
Q Consensus 403 isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~ 482 (876)
+++.+++|+.++|+||+||||||++++|+++++|..|.+.++ |..++.+.. +..+.++.|.. + + +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~----~---~----~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG----G---Q----GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC----C---C----Cc
Confidence 457788999999999999999999999999999999988885 344444332 22333322210 0 0 11
Q ss_pred CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 002817 483 DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562 (876)
Q Consensus 483 ~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~ 562 (876)
+..+.+ =.+++++-.+||++++|||.+ .+ +.+.
T Consensus 203 ~~~~~~----------------------------------------~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~ 235 (308)
T TIGR02788 203 AKVTPK----------------------------------------DLLQSCLRMRPDRIILGELRG---DE----AFDF 235 (308)
T ss_pred CccCHH----------------------------------------HHHHHHhcCCCCeEEEeccCC---HH----HHHH
Confidence 112222 235567778999999999996 22 2334
Q ss_pred HHHhcCCC-eEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHh
Q 002817 563 LDRVMVGR-TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 563 l~~~~~~~-T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
++....|. +++..+|..+.....||+..|..|++...|...|.+
T Consensus 236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 44443444 569999999988889999999999999988887766
No 439
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.14 E-value=5.7e-11 Score=127.88 Aligned_cols=171 Identities=26% Similarity=0.374 Sum_probs=121.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCCC----HHHHhcc--eEEEeccCCCc
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL-----------LDGNNIKGLD----LKWLRQQ--IGLVNQEPALF 470 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~-----------idG~di~~~~----~~~lr~~--i~~V~Q~~~Lf 470 (876)
+||+..++||.+|-||||-++.|.|-.+|.-|.-. ..|..+..+- .+.++.- .-||-|=|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999999877532 1122222211 1122221 23555555555
Q ss_pred cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 002817 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (876)
Q Consensus 471 ~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSa 550 (876)
.+++.+++.--.+..+.+++.+..++.+.+ +-++ ..||||+-||.|||-+.++++|++++|||.|-
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~----------~re~----~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLL----------DREV----EQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHH----------Hhhh----hhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 667777664322223344444433333332 2222 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCCeEEEEcCCchhhhh-cCEEEEEe
Q 002817 551 LDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQ 592 (876)
Q Consensus 551 LD~~te~~i~~~l~~~-~~~~T~I~ItHrls~i~~-aD~Iivl~ 592 (876)
||......--..|+.+ ..++=+|+|-|+|+.+.. .|-|.++-
T Consensus 244 LDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9999887777777765 468999999999998876 78887775
No 440
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=2.4e-10 Score=118.65 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=85.9
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc-ccH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER-FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTI 474 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~-~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~-~TI 474 (876)
..+.+|+++.+++|++++|.||+|+||||+++.+.+ .+.++.|.....- .. +++|..| +|. -..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~----------~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA----------TLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce----------EEeccce---EEEEecC
Confidence 468899999999999999999999999999999999 7788888754332 11 2444333 221 112
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 002817 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (876)
Q Consensus 475 reNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~ 554 (876)
.|++.-|.. .-..|+.+..+. =.-..+|+++|||||.++.|+.
T Consensus 84 ~d~~~~~~S-tF~~e~~~~~~i------------------------------------l~~~~~~sLvllDE~~~gT~~~ 126 (222)
T cd03287 84 SDSIQHGMS-TFMVELSETSHI------------------------------------LSNCTSRSLVILDELGRGTSTH 126 (222)
T ss_pred ccccccccc-hHHHHHHHHHHH------------------------------------HHhCCCCeEEEEccCCCCCChh
Confidence 233322211 011222222111 1113579999999997776655
Q ss_pred HHHHH-HHHHHHhc--CCCeEEEEcCCchhhhhc
Q 002817 555 SENSV-QEALDRVM--VGRTTVVVAHRLSTIRNA 585 (876)
Q Consensus 555 te~~i-~~~l~~~~--~~~T~I~ItHrls~i~~a 585 (876)
....+ ...++.+. ++.|+|++||..+.....
T Consensus 127 d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 127 DGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 44443 33333332 478999999998875543
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.08 E-value=5.1e-10 Score=129.66 Aligned_cols=111 Identities=34% Similarity=0.520 Sum_probs=90.3
Q ss_pred hhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcC
Q 002817 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN--PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577 (876)
Q Consensus 501 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~--p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItH 577 (876)
+|+...--||-|. ...-.+||||+.|||-||+.+-.+ -=+|+||||+.+|-+.--+.+.+.|++++ .|.|+|+|-|
T Consensus 463 ~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 463 GFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 4555554456554 334579999999999999999876 35899999999999985556666776664 5899999999
Q ss_pred CchhhhhcCEEEEE------eCCeEEEecChhHHhcCCCch
Q 002817 578 RLSTIRNADVIAVV------QGRKIVKTGSHEELISNPNSA 612 (876)
Q Consensus 578 rls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~~g~ 612 (876)
+.++++.||+|+=| ..|+|+.+||++|++++++..
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl 582 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL 582 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence 99999999999988 479999999999999985443
No 442
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.08 E-value=1.5e-08 Score=121.86 Aligned_cols=114 Identities=21% Similarity=0.417 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHH
Q 002817 743 LFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILI 822 (876)
Q Consensus 743 ~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~ 822 (876)
+++++.++..++.+++.+.+...+.+...++|.++|+++++.|.+||+ .+++|++++|+++|.+.++......+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~ 147 (592)
T PRK10790 70 AYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVL 147 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677888888889999999999999999999999999999 799999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002817 823 QNFGLVTASFVIAFILNWRITLVVVATYPLIISGHI 858 (876)
Q Consensus 823 ~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~ 858 (876)
..+..+++.+++.++.+|+++++++..+|+.++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~ 183 (592)
T PRK10790 148 RSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMV 183 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888899999999988888887765543
No 443
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.07 E-value=1.9e-08 Score=119.37 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 698 GVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKM 777 (876)
Q Consensus 698 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~ 777 (876)
+..+.+++++.....+...+...+++........ .......+..++++++++..++.+++.+.....+.+...++|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 83 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERL 83 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444555433321111 111223345566666777788899999999999999999999999
Q ss_pred HHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002817 778 FSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGH 857 (876)
Q Consensus 778 ~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~ 857 (876)
|+++++.|..||+ .+++|.+++|+++|++.+++.+...+..++..+..+++.+++++.++|++++++++.+|+..+..
T Consensus 84 ~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 84 LAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 79999999999999999999998888888888888888888899999999999888888776554
Q ss_pred H
Q 002817 858 I 858 (876)
Q Consensus 858 ~ 858 (876)
.
T Consensus 162 ~ 162 (529)
T TIGR02857 162 I 162 (529)
T ss_pred H
Confidence 3
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.07 E-value=1.1e-09 Score=114.93 Aligned_cols=145 Identities=18% Similarity=0.326 Sum_probs=83.2
Q ss_pred EecCCCEEEEEcCCCccHHHH-HHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHH-HcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTV-ISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI-LYGKD 483 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTl-l~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI-~~g~~ 483 (876)
-+++|+.+.|+|++||||||+ ++.+.+..++... +.|++.+-. ...+.++. .+|.+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--------------------~~yi~~e~~--~~~~~~~~~~~g~~ 77 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--------------------VSYVSTQLT--TTEFIKQMMSLGYD 77 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--------------------EEEEeCCCC--HHHHHHHHHHhCCc
Confidence 379999999999999999999 6888888765433 334432210 11122222 22221
Q ss_pred CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCC----CHHH
Q 002817 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK----NPSILLLDEATSAL----DAES 555 (876)
Q Consensus 484 ~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~----~p~IllLDE~tSaL----D~~t 555 (876)
.++... . +...++. + ...+|++++++-.++|.+-. +|+++++||||+.+ |+..
T Consensus 78 ---~~~~~~---~-~~l~~~~---------~---~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 78 ---INKKLI---S-GKLLYIP---------V---YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred ---hHHHhh---c-CcEEEEE---------e---cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 011000 0 0000000 0 01356776666555554433 69999999999999 6666
Q ss_pred HHHHHHHHHHhcC-CCeEEEEcCCchhh--------hh-cCEEEEEe
Q 002817 556 ENSVQEALDRVMV-GRTTVVVAHRLSTI--------RN-ADVIAVVQ 592 (876)
Q Consensus 556 e~~i~~~l~~~~~-~~T~I~ItHrls~i--------~~-aD~Iivl~ 592 (876)
.+.+.+.++.+.+ ++|+ ++||....+ .. ||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 6777777776643 5655 556665432 22 57777776
No 445
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.07 E-value=1.7e-08 Score=120.93 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=129.5
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMG 766 (876)
Q Consensus 687 ~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ 766 (876)
++.+.+++++++..+.+++++.++..+...+.+..++...+.. ...........+++++.++..++.+++.+.....+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGG--RDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566665555555555555454444444444332221 11111222344566677777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 767 ERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVV 846 (876)
Q Consensus 767 ~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~lv~ 846 (876)
.+....+|..+|+++++.|.++|+ ..++|.+++|+++|++.++..+...+..++..+..+++.++++++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999 689999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHH
Q 002817 847 VATYPLIISGHIKTL 861 (876)
Q Consensus 847 l~~~pl~~~~~~~~~ 861 (876)
+++.|+.++...+..
T Consensus 161 l~~~~l~~~~~~~~~ 175 (571)
T TIGR02203 161 VVMLPVLSILMRRVS 175 (571)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887765433
No 446
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.04 E-value=3.1e-08 Score=118.46 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHH
Q 002817 744 FCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQ 823 (876)
Q Consensus 744 ~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~ 823 (876)
+.+++++..++.++..+.....+.+...++|.++|+++++.|++||+ .+++|.+++|+++|++.++..+...+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~ 143 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVA 143 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777888888888999999999999999999999999999 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002817 824 NFGLVTASFVIAFILNWRITLVVVATYPLIIS 855 (876)
Q Consensus 824 ~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~ 855 (876)
.++.++++++++++.+|+++++++..+|++++
T Consensus 144 ~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~ 175 (574)
T PRK11160 144 ALVVILVLTIGLSFFDLTLALTLGGILLLLLL 175 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98889999999999999999988777776544
No 447
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.03 E-value=3.5e-08 Score=117.03 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHH
Q 002817 747 AAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFG 826 (876)
Q Consensus 747 l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~ 826 (876)
+.++..++.+++.+.....+.+...++|.++|+++++.|.+||+ .+++|.+++|+++|++.++..+...+..++..+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~ 139 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALV 139 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778888888899999999999999999999999999 7999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002817 827 LVTASFVIAFILNWRITLVVVATYPLIISGH 857 (876)
Q Consensus 827 ~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~ 857 (876)
.+++.++++++.+|++++++++.+|++.+..
T Consensus 140 ~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~ 170 (529)
T TIGR02868 140 VGSAAVAAIALLSVPAALVLAAGLLLAGFVA 170 (529)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999888777765443
No 448
>PRK01156 chromosome segregation protein; Provisional
Probab=99.02 E-value=6.3e-10 Score=139.96 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=66.8
Q ss_pred CCCCCCHHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C--C-CeEEEEcCCchhhhhcC
Q 002817 517 RGIQLSGGQKQRIAI------SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V--G-RTTVVVAHRLSTIRNAD 586 (876)
Q Consensus 517 ~G~~LSGGQkQRIai------ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~--~-~T~I~ItHrls~i~~aD 586 (876)
.+..||||||||+|| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999888888876432 2 2 58999999999999999
Q ss_pred EEEEEe
Q 002817 587 VIAVVQ 592 (876)
Q Consensus 587 ~Iivl~ 592 (876)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 449
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.01 E-value=2e-10 Score=128.30 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=55.8
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCeeCCCCCHHHHhcceEEEeccC
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-EILLDGNNIKGLDLKWLRQQIGLVNQEP 467 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G-~I~idG~di~~~~~~~lr~~i~~V~Q~~ 467 (876)
.+|++||+++++||.++|+||||||||||++ .+..+|++| +|.+||+++...+...++.-- +|.|+-
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4799999999999999999999999999999 778888888 799999999887654432221 777753
No 450
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.01 E-value=5.9e-10 Score=135.65 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=62.8
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEcCCchhhhhc-CEEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-ALDRVM-VGRTTVVVAHRLSTIRNA-DVIAV 590 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~-~l~~~~-~~~T~I~ItHrls~i~~a-D~Iiv 590 (876)
+..+-.++|+|++|+..|+|++ .+|+++|||||++++|+.....+.. .++.+. ++.++|++||..+....+ |+..|
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 3345578999999999999999 8999999999999999998877744 444443 478999999998876653 44433
Q ss_pred EeCCeEE
Q 002817 591 VQGRKIV 597 (876)
Q Consensus 591 l~~G~Iv 597 (876)
.++.+.
T Consensus 463 -~~~~~~ 468 (782)
T PRK00409 463 -ENASVE 468 (782)
T ss_pred -EEEEEE
Confidence 344443
No 451
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.01 E-value=4.7e-08 Score=117.10 Aligned_cols=168 Identities=14% Similarity=0.112 Sum_probs=113.0
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (876)
Q Consensus 685 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~ 764 (876)
++++++.+++++++..+.+++++..+..+...+.+.+++...+... .......++++++++..+..++.......
T Consensus 8 ~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (585)
T TIGR01192 8 VRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS-----DVLPTLALWAGFGVFNTIAYVLVAREADR 82 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677766655555555544444444455555554433211 01111222222333333444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (876)
Q Consensus 765 ~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~l 844 (876)
.+.+...++|+++|+++++.|++||+ .+++|.+++|+++|++.+.......+..++..+..+++.+++++.++|++++
T Consensus 83 ~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 160 (585)
T TIGR01192 83 LAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI 160 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677999999999999999 6899999999999999999888888888888888888888888899999999
Q ss_pred HHHhHHHHHHHHHHH
Q 002817 845 VVVATYPLIISGHIK 859 (876)
Q Consensus 845 v~l~~~pl~~~~~~~ 859 (876)
++++++|+.++...+
T Consensus 161 i~l~~~~~~~~~~~~ 175 (585)
T TIGR01192 161 VLMVLGILYILIAKL 175 (585)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888887766553
No 452
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.00 E-value=3e-08 Score=118.03 Aligned_cols=165 Identities=9% Similarity=0.091 Sum_probs=116.9
Q ss_pred HHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 684 AIKLYSMVR-PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (876)
Q Consensus 684 ~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 762 (876)
+++++.+.+ ++++.+..++++.++.++...........++. ....... .....+.++.++..++.++..+..
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIH-----EENFLGQ--GSLFSFGGLCLLALLFRIGADIFP 77 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcccc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667 77766665555544443332222222222211 0000000 112234445556667888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (876)
Q Consensus 763 ~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l 842 (876)
...+.+...++|.++|+++++.|++||+ .+++|.+++|+++|++.++..+.. +..++..+.++++++++.++.+|++
T Consensus 78 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 78 AYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 799999999999999999988864 6666777777788888889999999
Q ss_pred HHHHHhHHHHHHHHHH
Q 002817 843 TLVVVATYPLIISGHI 858 (876)
Q Consensus 843 ~lv~l~~~pl~~~~~~ 858 (876)
++++++.+|+.++...
T Consensus 155 ~li~l~~~~~~~~~~~ 170 (555)
T TIGR01194 155 FAITISAIIIGTAAQL 170 (555)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888888766544
No 453
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.99 E-value=1.8e-09 Score=109.74 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=60.0
Q ss_pred hhhcCCCCCCCHHHHH-----HHHHHHH-HccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCCeEEEEcCCchh
Q 002817 512 TQVGERGIQLSGGQKQ-----RIAISRA-IVKNPSILLLDEATSALD---AESENSVQEALDRVM-VGRTTVVVAHRLST 581 (876)
Q Consensus 512 T~vGe~G~~LSGGQkQ-----RIaiARA-l~~~p~IllLDE~tSaLD---~~te~~i~~~l~~~~-~~~T~I~ItHrls~ 581 (876)
..+......+|+||+| +..+.++ .-.+|+++++|||++.+| ......+.+.++.+. .|.|+|+++|....
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3344556678999999 3444444 456899999999999999 666666666665543 47899999998764
Q ss_pred ---------hhh-cCEEEEEe
Q 002817 582 ---------IRN-ADVIAVVQ 592 (876)
Q Consensus 582 ---------i~~-aD~Iivl~ 592 (876)
+.. ||.|+.|+
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CCcccCcCceeEeeeEEEEEE
Confidence 444 89999887
No 454
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.97 E-value=6.6e-08 Score=118.70 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHH
Q 002817 742 ILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTIL 821 (876)
Q Consensus 742 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~ 821 (876)
..++++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|.+++|++ |.+.+.+.+...+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~ 276 (708)
T TIGR01193 200 IGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSL 276 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHH
Confidence 3444455556788899999999999999999999999999999999999 799999999998 8888887776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002817 822 IQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIK 859 (876)
Q Consensus 822 ~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~ 859 (876)
+..+..+++.++++++++|++++++++++|+.++..++
T Consensus 277 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~ 314 (708)
T TIGR01193 277 FLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIIL 314 (708)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777778889999999999888887776554
No 455
>PRK03918 chromosome segregation protein; Provisional
Probab=98.97 E-value=1.1e-09 Score=138.03 Aligned_cols=75 Identities=29% Similarity=0.404 Sum_probs=67.0
Q ss_pred CCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE
Q 002817 519 IQLSGGQKQ------RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 519 ~~LSGGQkQ------RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
..||||||| |+||||++..+|+++||||||++||+.....+.+.|..+. .+.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 5666778999999999999999999999999998888764 367999999999988889999999
Q ss_pred eC
Q 002817 592 QG 593 (876)
Q Consensus 592 ~~ 593 (876)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 456
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.95 E-value=1.9e-09 Score=132.75 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=58.7
Q ss_pred HccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEcCCchhh----------hhcCEEEEEeCCeEEEecCh
Q 002817 535 IVKNPSILLLDEATSAL-DAESENSVQEALDRVM-VGRTTVVVAHRLSTI----------RNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 535 l~~~p~IllLDE~tSaL-D~~te~~i~~~l~~~~-~~~T~I~ItHrls~i----------~~aD~Iivl~~G~Ive~Gt~ 602 (876)
+..+|+++++|||+++| |+...+.+.+.++... +|.++|++||+++.+ .+||..++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36799999999999999 6888899998888764 478999999999987 47999999999998877643
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.94 E-value=1.5e-09 Score=111.27 Aligned_cols=119 Identities=26% Similarity=0.373 Sum_probs=78.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPL-SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI 490 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~-~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v 490 (876)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 68999999999999999999998754 566655443331 1100 001111111
Q ss_pred HHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q 002817 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570 (876)
Q Consensus 491 ~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~ 570 (876)
++|.....++. ++++|+..+||++++||+. |.++-. .+++....|+
T Consensus 55 ----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~---~~l~~a~~G~ 100 (198)
T cd01131 55 ----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIR---LALTAAETGH 100 (198)
T ss_pred ----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHH---HHHHHHHcCC
Confidence 12222222221 4889999999999999996 665433 3333344689
Q ss_pred eEEEEcCCchhhhhcCEEEEEe
Q 002817 571 TTVVVAHRLSTIRNADVIAVVQ 592 (876)
Q Consensus 571 T~I~ItHrls~i~~aD~Iivl~ 592 (876)
+++.++|..+.....||++.|-
T Consensus 101 ~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 101 LVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEEecCCcHHHHHhHHHhhc
Confidence 9999999999988899987763
No 458
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.93 E-value=1.3e-07 Score=115.87 Aligned_cols=117 Identities=11% Similarity=0.265 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHH
Q 002817 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819 (876)
Q Consensus 740 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~ 819 (876)
+...++++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|.+++|+ +|++.+++.+...+.
T Consensus 181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~ 257 (694)
T TIGR01846 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSAL 257 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 344555566667788999999999999999999999999999999999999 79999999999 699999988776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002817 820 ILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIK 859 (876)
Q Consensus 820 ~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~ 859 (876)
.++..+..+++.++++++++|++++++++++|++++...+
T Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~ 297 (694)
T TIGR01846 258 TVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVF 297 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555555667788899999999998888887766543
No 459
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=2.3e-09 Score=136.35 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-c
Q 002817 518 GIQLSGGQKQRIAISRAIVK----------NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-A 585 (876)
Q Consensus 518 G~~LSGGQkQRIaiARAl~~----------~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-a 585 (876)
-.+||||+++|++||+||.. +|++|+|||||++||+++...+.+.|+++. .|+|+++|||....... +
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 36899999999999999985 799999999999999999999999998764 57899999999998765 8
Q ss_pred CEEEEEeCC
Q 002817 586 DVIAVVQGR 594 (876)
Q Consensus 586 D~Iivl~~G 594 (876)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
No 460
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.92 E-value=8.6e-08 Score=114.09 Aligned_cols=110 Identities=21% Similarity=0.244 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHH
Q 002817 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNF 825 (876)
Q Consensus 746 ~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~ 825 (876)
++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|.+++|+++|++.+...+. .+..++..+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~ 132 (547)
T PRK10522 56 GLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGI 132 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 334444556778888889999999999999999999999999999 79999999999999999987655 466677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002817 826 GLVTASFVIAFILNWRITLVVVATYPLIISGHI 858 (876)
Q Consensus 826 ~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~ 858 (876)
..+++.++++++++|++++++++.+|+.++..+
T Consensus 133 ~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~ 165 (547)
T PRK10522 133 ILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGF 165 (547)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999988888766544
No 461
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=1.6e-09 Score=140.99 Aligned_cols=75 Identities=27% Similarity=0.322 Sum_probs=68.6
Q ss_pred CCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEE
Q 002817 517 RGIQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 517 ~G~~LSGGQkQRIaiARAl----~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
+...||||||||++|||++ +++||++||||||++||+.+...+.+.|..+.++.|+|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4468999999999999998 57889999999999999999999999998887788999999999999999998754
No 462
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.90 E-value=1.9e-07 Score=111.96 Aligned_cols=116 Identities=22% Similarity=0.398 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHH
Q 002817 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820 (876)
Q Consensus 741 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~ 820 (876)
..+++++.++..++.+++.+.....+.+....+|..+|+++++.|.+||+ ..++|.+++|+++|.+.++......+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~ 138 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSM 138 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677788888889999999999999999999999999999 6889999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002817 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHI 858 (876)
Q Consensus 821 ~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~ 858 (876)
++..+..+++.+++.+.++|++++++++.+|+.++...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~ 176 (576)
T TIGR02204 139 ALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPIL 176 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999998888887765544
No 463
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.90 E-value=3.6e-09 Score=116.64 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCcccc-----------ceeEEecCCCEEEE
Q 002817 347 RAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFD-----------KFCLDIPAGKIVAL 415 (876)
Q Consensus 347 ~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~-----------~isl~i~~G~~vai 415 (876)
++..+.+|++++++.++... ..+....+.|+|+||+|.||+. ..+|+ |+++.|.+||+++|
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~------~~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNG------DDPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred eccccHhHHHHHhCCCccCC------CCccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 45678899999998765421 1122345789999999999853 36896 99999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCCC
Q 002817 416 VGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 416 VG~sGsGKSTll~lL~~~~~p~ 437 (876)
|||+|||||||+++|.+.+...
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred ECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999998754
No 464
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.88 E-value=1.9e-07 Score=114.68 Aligned_cols=117 Identities=9% Similarity=0.126 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHH
Q 002817 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820 (876)
Q Consensus 741 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~ 820 (876)
...++++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|.+++|++.| +.+.+.+...+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~ 273 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLAT 273 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHH
Confidence 34455555667788999999999999999999999999999999999999 79999999999988 6788888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002817 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIKT 860 (876)
Q Consensus 821 ~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~ 860 (876)
++..+..+++.++++++++|+++++.++++|+.++..++.
T Consensus 274 ~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 313 (710)
T TIGR03796 274 TALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLV 313 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888899999999999999888888765543
No 465
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.86 E-value=2.8e-07 Score=112.78 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHH
Q 002817 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820 (876)
Q Consensus 741 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~ 820 (876)
...++++.++..++.+++.+.....+.+...++|..+|+++++.|++||+ .+++|.+++|++ |.+.+++.+...+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~ 255 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLT 255 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHH
Confidence 44555566667788999999999999999999999999999999999999 799999999997 899998888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002817 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHI 858 (876)
Q Consensus 821 ~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~ 858 (876)
.+..+..+++.++++++++|++++++++++|+.++...
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~ 293 (686)
T TIGR03797 256 TLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTL 293 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666678888889999999999988887776544
No 466
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.86 E-value=4.9e-10 Score=134.36 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 237 YVKAGEIAEEVIGNVRTVQAFAGEDKAVKVY-----KEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVV 311 (876)
Q Consensus 237 ~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 311 (876)
.....+.+.|++.++.+||..+.|......+ .....+..+...+..........+...+......+++|+|.+++
T Consensus 39 ~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v 118 (644)
T PRK10733 39 QEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIF 118 (644)
T ss_pred HHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567789999999999999887655444 33344444433333333333333333344445567788999999
Q ss_pred HhcccCHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEE
Q 002817 312 HKHISNGG---ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVS 388 (876)
Q Consensus 312 ~~~~lt~g---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vs 388 (876)
..+.++.| .++++.........+ ..+...+..+.....+.+|+.++.+......
T Consensus 119 ~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~---------------------- 175 (644)
T PRK10733 119 FMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS---------------------- 175 (644)
T ss_pred HHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH----------------------
Confidence 99988887 444432221111122 3333445556666666677766654321100
Q ss_pred EECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 389 FCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 389 f~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
..+++..++++| +.++||+||||||+++.+.+...
T Consensus 176 ----------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 ----------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred ----------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 011222355666 99999999999999999998764
No 467
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.85 E-value=1.1e-07 Score=90.65 Aligned_cols=117 Identities=32% Similarity=0.421 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCH
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLS-GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~-G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~ 487 (876)
+|..+.|+||+||||||+++.|.+.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999988765 5666666432221111111
Q ss_pred HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH------
Q 002817 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE------ 561 (876)
Q Consensus 488 ~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~------ 561 (876)
.....+......+++.++..+++|-..+|+++++||+....+.........
T Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 223445566788999999999999999999999999999999997776543
Q ss_pred -HHHHhcCCCeEEEEcCC
Q 002817 562 -ALDRVMVGRTTVVVAHR 578 (876)
Q Consensus 562 -~l~~~~~~~T~I~ItHr 578 (876)
.......+..+|.++|.
T Consensus 108 ~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 108 LLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHhcCCCEEEEEeCC
Confidence 22233456777888873
No 468
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.85 E-value=1.2e-08 Score=114.74 Aligned_cols=168 Identities=20% Similarity=0.205 Sum_probs=117.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
++-++++-.|.. ...+++++ +++.+||+++|+|++|+|||||++.|.|..+|+.|.|.+.|..-
T Consensus 131 ~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------- 194 (432)
T PRK06793 131 FEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------- 194 (432)
T ss_pred hheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-------------
Confidence 455666655643 23577774 99999999999999999999999999999999998877666421
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc-----
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV----- 536 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~----- 536 (876)
-+++|.+.. .....+. ..|.+=-.-.+-|.|+|+|.+.+.+.+
T Consensus 195 ----------~ev~e~~~~------------~l~~~gl----------~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 195 ----------REVKDFIRK------------ELGEEGM----------RKSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred ----------ccHHHHHHH------------Hhhhccc----------ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444321 0000000 011111234678999999999998887
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecCh
Q 002817 537 --KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 537 --~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 602 (876)
.++-++++||+|...|+. +.|-..+.+.- .|.|..+-+|-.+.+++|-+ .++|.|...++-
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 688999999999999997 55554554443 47788888884444555655 478988876654
No 469
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.84 E-value=1.8e-08 Score=99.26 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=78.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~ 491 (876)
.++|.||+|+||||+++.+++...+..|.+ .|++++...- ..+++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v-------------------~~~~~e~~~~--~~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV-------------------VYVDIEEEIE--ELTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE-------------------EEEECCcchH--HHHHHHhhh----------
Confidence 368999999999999999999887755544 4444432211 111111000
Q ss_pred HHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHH
Q 002817 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA----------ESENSVQE 561 (876)
Q Consensus 492 ~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~----------~te~~i~~ 561 (876)
.. ...+++ ...+.......+.++.++++.+++...+|+++++||+++-+|. ...+.+.+
T Consensus 50 ------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 50 ------SL----KGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred ------hh----cccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 00 000111 1112222234455666788999999999999999999965544 33445554
Q ss_pred HHHHhc-CCCeEEEEcCCchhh
Q 002817 562 ALDRVM-VGRTTVVVAHRLSTI 582 (876)
Q Consensus 562 ~l~~~~-~~~T~I~ItHrls~i 582 (876)
.+.... .+.|+|+++|.....
T Consensus 119 l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhcCCceEEEEEecCCcc
Confidence 444433 388999999987644
No 470
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.83 E-value=3.2e-09 Score=109.72 Aligned_cols=69 Identities=28% Similarity=0.367 Sum_probs=60.4
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHH
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYE------------PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIr 475 (876)
++|++++|+||||||||||+++|.+.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 78898 699999999988888854 578888999998
Q ss_pred HHHHcCC
Q 002817 476 ENILYGK 482 (876)
Q Consensus 476 eNI~~g~ 482 (876)
+| .||.
T Consensus 78 ~~-~y~~ 83 (205)
T PRK00300 78 GN-YYGT 83 (205)
T ss_pred Cc-cccC
Confidence 88 4664
No 471
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.82 E-value=4.9e-07 Score=108.19 Aligned_cols=121 Identities=21% Similarity=0.404 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHH
Q 002817 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRS 818 (876)
Q Consensus 739 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l 818 (876)
.+..+++++.++..++.++..+...+.+.+...++|.++|+++++.|++||| .+++|.+++|+++|++.++..+....
T Consensus 53 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~ 130 (567)
T COG1132 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVL 130 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhH
Confidence 3455555666677788888888888888999999999999999999999999 79999999999999999999999886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002817 819 TILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIKTL 861 (876)
Q Consensus 819 ~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~~ 861 (876)
..+...+..+++.+++.+..+|+++++++..+|++.+...+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 173 (567)
T COG1132 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666678888899999999999999999998888887766544
No 472
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.81 E-value=5.8e-09 Score=135.53 Aligned_cols=75 Identities=25% Similarity=0.224 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 519 IQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~----~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
..||||||++++||+++. ++||++|||||+++||+.....+.+.|..+.++.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 479999999999999997 578999999999999999999999999888778899999999999999999987753
No 473
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.79 E-value=7.4e-07 Score=107.04 Aligned_cols=121 Identities=20% Similarity=0.382 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHH
Q 002817 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819 (876)
Q Consensus 740 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~ 819 (876)
....++..++...+..++|.+.+.+.+.|....+=.+.|+++++.|++||. ..++|.+++|++ |.+.+++.+....-
T Consensus 196 l~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~~-el~~Ir~flt~~~l 272 (709)
T COG2274 196 LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRVR-ELEQIREFLTGSIL 272 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHHH-HHHHHHHHHHHHHH
Confidence 345566666778899999999999999999999999999999999999999 799999999996 88888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002817 820 ILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIKTLLS 863 (876)
Q Consensus 820 ~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~~~~ 863 (876)
..+.-+..+++.++++++++|++++++++.+|++++.+++..+.
T Consensus 273 ~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~ 316 (709)
T COG2274 273 TLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666778888899999999999999999999988755543
No 474
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.77 E-value=8.5e-07 Score=106.57 Aligned_cols=113 Identities=14% Similarity=0.360 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHH
Q 002817 744 FCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQ 823 (876)
Q Consensus 744 ~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~ 823 (876)
+++++++..++.+++.+.....+.+....+|..+|+++++.|.++|+ ....|.+++|+++|++.+.......+..++.
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~ 148 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVR 148 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888888899999999999999999999999999 7899999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002817 824 NFGLVTASFVIAFILNWRITLVVVATYPLIISGHI 858 (876)
Q Consensus 824 ~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~ 858 (876)
.+..+++.+++.++++|++++++++++|+.++...
T Consensus 149 ~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~ 183 (582)
T PRK11176 149 EGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIR 183 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887766643
No 475
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.77 E-value=1.1e-06 Score=107.88 Aligned_cols=114 Identities=14% Similarity=0.228 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHH
Q 002817 743 LFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILI 822 (876)
Q Consensus 743 ~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~ 822 (876)
.++++.++..++.+++.+.....+.+...++|..+|+++++.|++| + .+++|.+++|+ +|++.+++.+...+...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~ 267 (694)
T TIGR03375 192 GVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTAL 267 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHH
Confidence 3444455567888999999999999999999999999999999998 6 58999999999 799999998877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002817 823 QNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIKT 860 (876)
Q Consensus 823 ~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~ 860 (876)
..+..+++.++++++++|+++++.++.+|+.++..++.
T Consensus 268 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~ 305 (694)
T TIGR03375 268 IDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLL 305 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777788899999999998888887776543
No 476
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.77 E-value=1e-06 Score=105.98 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASF 832 (876)
Q Consensus 753 i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~i 832 (876)
+..++..........+...+++.++|+++++.|..||+ ..+.|.+++|+++|++.+.......+..++..+...++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (588)
T PRK13657 71 IAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLL 148 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444455566999999999999999 7899999999999999998887777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002817 833 VIAFILNWRITLVVVATYPLIISGHIK 859 (876)
Q Consensus 833 vv~~~~~~~l~lv~l~~~pl~~~~~~~ 859 (876)
++.++.+|++++++++++|+.++...+
T Consensus 149 ~~~~~~~~~l~l~~l~~~~l~~~i~~~ 175 (588)
T PRK13657 149 PLALFMNWRLSLVLVVLGIVYTLITTL 175 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998888887765443
No 477
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.75 E-value=6.2e-07 Score=107.23 Aligned_cols=117 Identities=12% Similarity=0.187 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHH
Q 002817 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819 (876)
Q Consensus 740 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~ 819 (876)
+..+++++.++..++.+++.+.....+.+...++|.++|+++++.|++||+ .+++|.+++|+++|++.+.......+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~ 115 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL--RHRTGDLMARATNDVDRVVFAAGEGVL 115 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344454555556677777777788889999999999999999999999999 799999999999999999988777777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHH
Q 002817 820 ILIQNFGLVTASFVIA-FILNWRITLVVVATYPLIISGHI 858 (876)
Q Consensus 820 ~~~~~~~~~~~~ivv~-~~~~~~l~lv~l~~~pl~~~~~~ 858 (876)
.++..+...+++++++ ++++|++++++++++|+.++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~ 155 (569)
T PRK10789 116 TLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIK 155 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7777766555555554 57899999999888888776654
No 478
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.74 E-value=1e-07 Score=100.67 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=87.0
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHH-HcCCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI-LYGKDD 484 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI-~~g~~~ 484 (876)
-+++|..+.|.|++||||||+...++-..-.. |. .+.|+..+-.. ..+.+|. .+|-+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------g~------------~~~y~~~e~~~--~~~~~~~~~~g~~- 78 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-------GK------------KVYVITTENTS--KSYLKQMESVKID- 78 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-------CC------------EEEEEEcCCCH--HHHHHHHHHCCCC-
Confidence 58999999999999999999999886321111 21 35566553211 1122222 22211
Q ss_pred CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHH---HHH
Q 002817 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK--NPSILLLDEATSALDAESE---NSV 559 (876)
Q Consensus 485 ~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~--~p~IllLDE~tSaLD~~te---~~i 559 (876)
.++... .+...++..-| ++....|.++++.+...+..+. +|+++++||||+.+|.... ..+
T Consensus 79 --~~~~~~----~g~l~i~~~~~--------~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~ 144 (234)
T PRK06067 79 --ISDFFL----WGYLRIFPLNT--------EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF 144 (234)
T ss_pred --hhHHHh----CCCceEEeccc--------cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence 111000 00001111111 1223457789999999999998 9999999999975554333 333
Q ss_pred HHHHHHh-cCCCeEEEEcCCchh-------hhh-cCEEEEEeC
Q 002817 560 QEALDRV-MVGRTTVVVAHRLST-------IRN-ADVIAVVQG 593 (876)
Q Consensus 560 ~~~l~~~-~~~~T~I~ItHrls~-------i~~-aD~Iivl~~ 593 (876)
.+.++.+ .+++|+++++|.... +.. +|-++.|+.
T Consensus 145 l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 145 LTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 3334432 357899999997653 222 566666653
No 479
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.71 E-value=7.2e-08 Score=99.94 Aligned_cols=130 Identities=21% Similarity=0.291 Sum_probs=83.4
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--------CCCCc-cEEEECCeeCCCCCHHHHhcceEEEeccC
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--------YEPLS-GEILLDGNNIKGLDLKWLRQQIGLVNQEP 467 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--------~~p~~-G~I~idG~di~~~~~~~lr~~i~~V~Q~~ 467 (876)
..|-+|++|++++|++++|.||+|+||||+++.+... +-|-+ .+ ++++.
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~-------------------i~~~~--- 74 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMR-------------------LSLVD--- 74 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccE-------------------ecccc---
Confidence 4688999999999999999999999999999887654 22221 11 22111
Q ss_pred CCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 002817 468 ALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546 (876)
Q Consensus 468 ~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE 546 (876)
.+| .-.-.||+..|.... ..|+.+..+. + . ...+|+++||||
T Consensus 75 ~i~~~~~~~d~~~~~~StF-~~e~~~~~~i------l----------------------------~--~~~~~sLvLlDE 117 (218)
T cd03286 75 RIFTRIGARDDIMKGESTF-MVELSETANI------L----------------------------R--HATPDSLVILDE 117 (218)
T ss_pred EEEEecCcccccccCcchH-HHHHHHHHHH------H----------------------------H--hCCCCeEEEEec
Confidence 122 113344444332111 1222221111 1 1 124789999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHhcC--CCeEEEEcCCchhhhhc
Q 002817 547 ATSALDAESENSVQEA-LDRVMV--GRTTVVVAHRLSTIRNA 585 (876)
Q Consensus 547 ~tSaLD~~te~~i~~~-l~~~~~--~~T~I~ItHrls~i~~a 585 (876)
|.++.|+.....+..+ ++.+.+ +.++|++||..+.....
T Consensus 118 ~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 118 LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 9999999987777555 555544 78999999998876653
No 480
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.71 E-value=5.2e-05 Score=82.24 Aligned_cols=210 Identities=13% Similarity=0.045 Sum_probs=131.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002817 68 HGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQ 147 (876)
Q Consensus 68 ~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~ 147 (876)
...+.-.+...-|.+.+.+... +. .........++++++...++..... +..+++..+.|..+-+++.++
T Consensus 39 ~~~lsv~~~~~~g~~~~aL~~~--d~----~~f~~~l~~~~~l~~~~~~l~~~~~----yl~~~L~l~wR~~Lt~~~~~~ 108 (281)
T PF06472_consen 39 RVYLSVRINFWNGDFYNALQQK--DL----QAFWRLLLLFLLLAIASALLNSILK----YLRQRLALRWREWLTRHLHDR 108 (281)
T ss_pred HHHHHHHHHHHhhHHHHHHHhc--CH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445566777765432 11 2222222333333334434333333 445555666666655555432
Q ss_pred ---ChhhhhcCCChh---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 002817 148 ---DISLFDTEASTG---EVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISL-VTLSIVPLIALAGG 220 (876)
Q Consensus 148 ---~~~~~~~~~~~G---~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-~~l~~~pl~~~~~~ 220 (876)
+..||.-....+ ..=.|++.|++.+-+...+.+..++..++.++.....+...+..+++ ++++...+...+..
T Consensus 109 yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~ 188 (281)
T PF06472_consen 109 YLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITH 188 (281)
T ss_pred HcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 235665321222 33459999999998877776666666666655555554444434444 55556666677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGL 287 (876)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 287 (876)
.+++...+...+.++..++......-..++-+.|-.|+.|+.+.++.++..++..+...+....+..
T Consensus 189 ~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~ 255 (281)
T PF06472_consen 189 WIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLR 255 (281)
T ss_pred HHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888999999999999999999999988888877766655444433
No 481
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.71 E-value=4.4e-08 Score=103.94 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhh
Q 002817 519 IQLSGGQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTI 582 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p---~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i 582 (876)
..+|.|+||.++|+-+++..+ .++++|||-++|++...+.+.+.|....+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999999988776 89999999999999999999899987776 78999999998754
No 482
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.68 E-value=4e-08 Score=124.48 Aligned_cols=76 Identities=28% Similarity=0.335 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCE
Q 002817 518 GIQLSGGQKQRIAISRAIVK--------NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADV 587 (876)
Q Consensus 518 G~~LSGGQkQRIaiARAl~~--------~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~ 587 (876)
..+|||||+||++|||||.. +|++|+|||||++||+.+...+.+.|..+. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 47899999999999999995 899999999999999999999999998874 68999999996655544 445
Q ss_pred EEEEeC
Q 002817 588 IAVVQG 593 (876)
Q Consensus 588 Iivl~~ 593 (876)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 555543
No 483
>PRK02224 chromosome segregation protein; Provisional
Probab=98.67 E-value=3.2e-08 Score=124.59 Aligned_cols=76 Identities=32% Similarity=0.417 Sum_probs=66.3
Q ss_pred CCCCHHHHH------HHHHHHHHccC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEcCCchhhhh
Q 002817 519 IQLSGGQKQ------RIAISRAIVKN------PSILLLDEATSALDAESENSVQEALDRVMV-G-RTTVVVAHRLSTIRN 584 (876)
Q Consensus 519 ~~LSGGQkQ------RIaiARAl~~~------p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~-~T~I~ItHrls~i~~ 584 (876)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 267999999999999999989888877653 3 489999999999999
Q ss_pred cCEEEEEeCC
Q 002817 585 ADVIAVVQGR 594 (876)
Q Consensus 585 aD~Iivl~~G 594 (876)
||++++|.+.
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
No 484
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.65 E-value=7.5e-07 Score=107.95 Aligned_cols=117 Identities=15% Similarity=-0.069 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHH
Q 002817 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820 (876)
Q Consensus 741 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~ 820 (876)
..+++++.++..+..++...+......++..++|++.|++....+++||| . ++|.+++|+++|++.+...+...+..
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d--~-~~g~~~srlt~Dv~~i~~~~~~~~~~ 218 (659)
T TIGR00954 142 FLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD--S-RIQNPDQLLTQDVEKFCDSVVELYSN 218 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC--C-CCCCccccHHHHHHHHHHHHHHHHHH
Confidence 34444555556667777777778888899999999999999999999999 3 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Q 002817 821 LIQNFGLVTASFVIAFI-LNWRITLVVVATYPLIISGHIKT 860 (876)
Q Consensus 821 ~~~~~~~~~~~ivv~~~-~~~~l~lv~l~~~pl~~~~~~~~ 860 (876)
++..++.+++.++..+. .+|.+++++++.+|+.+....+.
T Consensus 219 l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~ 259 (659)
T TIGR00954 219 LTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKL 259 (659)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877775 89999999988888887776543
No 485
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.58 E-value=0.0007 Score=76.13 Aligned_cols=217 Identities=6% Similarity=-0.049 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHc--CChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 127 YTGERQAAKMRMAYLRSMLN--QDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204 (876)
Q Consensus 127 ~~~~~~~~~lR~~~~~~l~~--~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (876)
+..++...+-|..+-+..+. ...+..| .-=.|++.|++++-+...+....++..+.+.+.-+.++..++..+
T Consensus 160 ~~~~~l~irWR~wLT~~yl~~Wl~~r~ie------nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l 233 (409)
T PRK11098 160 FFVSHYVFRWRTAMNEYYMAHWQKLRHIE------GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHV 233 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34556666667766665554 2112111 134689999988887776666677777776666666665555432
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHhccH-HHHHHHH
Q 002817 205 -------------SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEI---AEEVIGNVRTVQAFAGE-DKAVKVY 267 (876)
Q Consensus 205 -------------~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~E~l~gi~~Ik~~~~e-~~~~~~~ 267 (876)
..++++...+-..+..++++++.+..-+.++..++.... ..|.-. ..| +...++|
T Consensus 234 ~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F 305 (409)
T PRK11098 234 PELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELF 305 (409)
T ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHH
Confidence 222222222333344556666666655555544433331 122211 223 3445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002817 268 KEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIR 347 (876)
Q Consensus 268 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 347 (876)
++.+++..+...+.........+..++.. ++.+....-....|.+|.|.+.....++.....+++.+...+..+.+
T Consensus 306 ~~V~~N~~rl~~~~~~l~~f~~~y~~~~~----i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lae 381 (409)
T PRK11098 306 SNVRKNYFRLYFHYMYFNIARILYLQVDN----VFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVE 381 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655554444433333222222 22222334455689999999988888888888889999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 002817 348 AKAAAYPIFEMIER 361 (876)
Q Consensus 348 a~~a~~ri~~~l~~ 361 (876)
-++..+|+.++.+.
T Consensus 382 l~A~~~RL~~F~~~ 395 (409)
T PRK11098 382 LLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 486
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.56 E-value=1.2e-07 Score=107.03 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=70.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC---CeeCCCCCHHHH
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD---GNNIKGLDLKWL 456 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~id---G~di~~~~~~~l 456 (876)
+.++.++++..|... ..+++.++ +|.+||+++|+||||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 468999999999643 56888886 999999999999999999999999999999999999885 677766654433
Q ss_pred ----hcceEEEecc
Q 002817 457 ----RQQIGLVNQE 466 (876)
Q Consensus 457 ----r~~i~~V~Q~ 466 (876)
++.|++|+|.
T Consensus 215 ~~~r~rtI~vV~qs 228 (450)
T PRK06002 215 ADNLKKAVAVVATS 228 (450)
T ss_pred HHhhCCeEEEEEcC
Confidence 4679999995
No 487
>PRK12369 putative transporter; Reviewed
Probab=98.56 E-value=0.0013 Score=72.49 Aligned_cols=223 Identities=12% Similarity=-0.009 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002817 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI- 204 (876)
Q Consensus 126 ~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 204 (876)
.+..+++..+.|..+-+++++.=+..-+...++ =.|++.|++.+-+...+....++..+++++.-..++..++..+
T Consensus 84 ~~~~~~l~i~WR~wLT~~~l~~wl~~~~~iDNP---DQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~ 160 (326)
T PRK12369 84 DYFASHYAFRWREAMTFSYLKFWRNKRDNIEGS---SQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVS 160 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc---cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 345566667777777777665433211110122 2699999999888777767777777766666565555544222
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhccHHHHHHHHHHH
Q 002817 205 -----------SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGE---IAEEVIGNVRTVQAFAGEDKAVKVYKEA 270 (876)
Q Consensus 205 -----------~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~E~l~gi~~Ik~~~~e~~~~~~~~~~ 270 (876)
..++++...+...+..++++++.+..-+.++..++..- ...|.-.. |.-.+...++|.+.
T Consensus 161 ~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~~E~~~l~~~f~~v 234 (326)
T PRK12369 161 LPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------YAKPETLIELFTGL 234 (326)
T ss_pred eeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------hhhHHHHHHHHHHH
Confidence 11222222233334455566665555555544443332 11121111 21124456667666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002817 271 LSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (876)
Q Consensus 271 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (876)
.+...+...+...+..+..+..+.. .++......-....|.++.|.+.....++.....+++.+...+..+.+=.+
T Consensus 235 ~~n~~~~~~~~~~l~~~~~~y~~~~----~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A 310 (326)
T PRK12369 235 RFNYFRLFLHYGYFNIWLISFSQMM----VIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRS 310 (326)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555444443333322222 222223334455678999999988888888888889999999999999999
Q ss_pred HHHHHHHHhcc
Q 002817 351 AAYPIFEMIER 361 (876)
Q Consensus 351 a~~ri~~~l~~ 361 (876)
..+|+.++.+.
T Consensus 311 ~~~RL~~f~~~ 321 (326)
T PRK12369 311 IYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 488
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.51 E-value=1.7e-07 Score=95.26 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=59.3
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCC--Cc-cccHH
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA--LF-ATTIR 475 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~--Lf-~~TIr 475 (876)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+--.++ -+..++++.|.+. .+ .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455567789999999999999999999999999999999999999775332221 2455777766553 22 24677
Q ss_pred HHHHc
Q 002817 476 ENILY 480 (876)
Q Consensus 476 eNI~~ 480 (876)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77654
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=98.49 E-value=1e-07 Score=106.38 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=68.6
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHH
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL 479 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~ 479 (876)
++.+.-.+++|+++++||+||+|||||++.|+|...|..|+|.++|..-+.. ..++++.+++|++++|+.+...|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhhc
Confidence 5666667889999999999999999999999999999999999987543332 3466899999999999988888887
Q ss_pred cCCC
Q 002817 480 YGKD 483 (876)
Q Consensus 480 ~g~~ 483 (876)
+..+
T Consensus 262 l~~~ 265 (356)
T PRK01889 262 LWDA 265 (356)
T ss_pred ccCc
Confidence 7653
No 490
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.49 E-value=1.5e-06 Score=84.84 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=99.0
Q ss_pred CEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC-CCC-
Q 002817 411 KIVALVGGSGSGKSTVISLIE---RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDA- 485 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~---~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~-~~~- 485 (876)
.++.|+|.+|||||||+-.|. |++.. .|.=-..| +...-...+.+++.+-. ++.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~a-Gg~~n~~~--------------------~~~~s~s~l~~~~k~~~~~k~~ 96 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAA-GGGKNFKG--------------------ELDASHSALVDYAKLHKRKKPP 96 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhcccccc-CCCcCcCc--------------------ccccccchHHHhHHHhhcCCCC
Confidence 378899999999999999886 44432 22211111 11112233445555433 221
Q ss_pred -----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCC---CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 002817 486 -----TMEEITRAAKLSEAMSFISNLPERFETQVGERGI---QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557 (876)
Q Consensus 486 -----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~---~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~ 557 (876)
+-|.....+. ..+| ++ -+.+-+|. .-|-|+-=-=-+.|.+ .+.-|||||||-|+|-+.-+-
T Consensus 97 ~g~FlRAEs~yn~as--~~De----~~----~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQl 165 (233)
T COG3910 97 IGFFLRAESFYNVAS--YLDE----AD----GEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQL 165 (233)
T ss_pred cceEEehhHHHHHHH--HHHh----hh----hhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHH
Confidence 2344444444 1111 11 11112233 4488887655566666 567899999999999999888
Q ss_pred HHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 558 SVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 558 ~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
.+...|+++. .|.-+|+.||.+=.+.. --.|+-++.|.+ ++-+++|.
T Consensus 166 ella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~-~~~~fe~t 214 (233)
T COG3910 166 ELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI-EERDFEET 214 (233)
T ss_pred HHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-cccchHHH
Confidence 8888888764 47789999998765433 237888887764 44455554
No 491
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=1.3e-07 Score=106.76 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=63.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc---EEEECCeeCCCCCHHHH------hcceEEEeccCC
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG---EILLDGNNIKGLDLKWL------RQQIGLVNQEPA 468 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G---~I~idG~di~~~~~~~l------r~~i~~V~Q~~~ 468 (876)
.+++++ |++.+||+++|+|++|||||||+++|.|+++|+.+ .|-.+|.+++++..+.+ |+.+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 579999 99999999999999999999999999999999864 44456666666554544 557899999876
Q ss_pred Cc-cccHHHHH
Q 002817 469 LF-ATTIRENI 478 (876)
Q Consensus 469 Lf-~~TIreNI 478 (876)
.+ .-++.+|.
T Consensus 223 ~~~rl~a~e~a 233 (434)
T PRK07196 223 PLMRIKATELC 233 (434)
T ss_pred hhhhHHHHHHH
Confidence 55 34666665
No 492
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.47 E-value=6.9e-07 Score=99.59 Aligned_cols=123 Identities=23% Similarity=0.339 Sum_probs=81.9
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA 485 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~ 485 (876)
.+++..+.|.||+||||||+++.|++.+++ .+|.|..-+.++.-. .....+.+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~--------------------- 173 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLIN--------------------- 173 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEE---------------------
Confidence 467899999999999999999999998774 456665544322100 000000000
Q ss_pred CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002817 486 TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565 (876)
Q Consensus 486 ~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~ 565 (876)
+.++|..+.++ -=++++||-.+||++++||+. |.++.....++
T Consensus 174 -------------------------q~evg~~~~~~------~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a--- 216 (343)
T TIGR01420 174 -------------------------QREVGLDTLSF------ANALRAALREDPDVILIGEMR---DLETVELALTA--- 216 (343)
T ss_pred -------------------------ccccCCCCcCH------HHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---
Confidence 11122222111 234788999999999999997 88877654333
Q ss_pred hcCCCeEEEEcCCchhhhhcCEEEEE
Q 002817 566 VMVGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 566 ~~~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
...|.+++...|..+.....||++-|
T Consensus 217 a~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 217 AETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 34689999999999988888888654
No 493
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.46 E-value=3e-06 Score=105.25 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=48.4
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhc
Q 002817 531 ISRAIVKNPSILLLDEATSAL-DAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNA 585 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaL-D~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~a 585 (876)
|+|++..+|+++++|||+++| |+...+.+.+.++..+ .|.+++++||+++.+...
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s 736 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANS 736 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhC
Confidence 789999999999999999999 6888999988887764 478999999999988653
No 494
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.44 E-value=3.9e-07 Score=104.18 Aligned_cols=142 Identities=17% Similarity=0.256 Sum_probs=84.8
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHc
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~ 480 (876)
++.++.+++|+.+++|||+|+||||++..|.+.+.+..|.. +|++|++|+ |..+..||+.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 34445567799999999999999999999999987777642 489999998 77788999975
Q ss_pred -CC----CC-CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC-----CEEEEeCCCC
Q 002817 481 -GK----DD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP-----SILLLDEATS 549 (876)
Q Consensus 481 -g~----~~-~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p-----~IllLDE~tS 549 (876)
++ +. ..++....... +..+.+.+...|..-|.+-. ...+.-+.+++.++ .+|+||..+.
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~a-------L~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLA-------LSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHhCCCeeccCCchhHHHH-------HHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 22 21 01111111111 22344444455555443211 11223333344443 6889988877
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEcC
Q 002817 550 ALDAESENSVQEALDRVM-VGRTTVVVAH 577 (876)
Q Consensus 550 aLD~~te~~i~~~l~~~~-~~~T~I~ItH 577 (876)
.- .+.+.++... .+.+-+++|+
T Consensus 378 ~~------~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 GD------TLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred HH------HHHHHHHHhccCCCCEEEEeC
Confidence 62 2333333322 3567777776
No 495
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.43 E-value=3.8e-06 Score=93.05 Aligned_cols=170 Identities=28% Similarity=0.426 Sum_probs=114.6
Q ss_pred EEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCeeCCCCCHHHHhcceEEEec
Q 002817 387 VSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465 (876)
Q Consensus 387 vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~-~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q 465 (876)
|+|..|.+. .+.+ +-||+| .+.|||..--|||||+++|. |-|+.--| ||.+ -+|.
T Consensus 227 ve~~LP~~g---~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-------------~VVT- 282 (448)
T PF09818_consen 227 VEIELPNGG---TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-------------FVVT- 282 (448)
T ss_pred EEEECCCCC---EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-------------EEEE-
Confidence 677776432 3455 578999 99999999999999999997 67775555 4531 1111
Q ss_pred cCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 002817 466 EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545 (876)
Q Consensus 466 ~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLD 545 (876)
++.-. .|| .++ =+...-+.+..||..||.|.||. -=.-.+=||---|=-+|..|+=..++.||+|
T Consensus 283 ~~~av--kir------AED------GR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 283 DPDAV--KIR------AED------GRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred CCCce--EEE------ecC------CceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 11000 000 000 01122335678999999999988 3334577999999999999999999999999
Q ss_pred CCCCCC-----CHHHHHHH----------HHHHHHh--cCCCeEEEEcCCch-hhhhcCEEEEEeCCe
Q 002817 546 EATSAL-----DAESENSV----------QEALDRV--MVGRTTVVVAHRLS-TIRNADVIAVVQGRK 595 (876)
Q Consensus 546 E~tSaL-----D~~te~~i----------~~~l~~~--~~~~T~I~ItHrls-~i~~aD~Iivl~~G~ 595 (876)
|=|||- |..-++.| .+-++.+ ..|-++|+|+--.. ++..||+|++||+=+
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 999997 55555555 1112222 13666666665544 688899999999743
No 496
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=2.4e-07 Score=103.77 Aligned_cols=63 Identities=29% Similarity=0.392 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh
Q 002817 519 IQLSGGQKQRIAISRAIVK---------NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR 583 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~---------~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~ 583 (876)
..+|.||+++++||.++.. +|||||||||+|.||+...+.+.+.|.+. +.++++.||.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999998888653 679999999987654
No 497
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.38 E-value=2.4e-07 Score=98.15 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=35.5
Q ss_pred HHccCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCCeEEEEcCCch
Q 002817 534 AIVKNPSILLLDEATSA------LDAESENSVQEALDRVM--VGRTTVVVAHRLS 580 (876)
Q Consensus 534 Al~~~p~IllLDE~tSa------LD~~te~~i~~~l~~~~--~~~T~I~ItHrls 580 (876)
+..++|+++++| |+++ .|+.....+.+.|.++. .+.|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 345799999999 7765 68887777877777654 3789999999754
No 498
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.37 E-value=9.2e-08 Score=111.50 Aligned_cols=155 Identities=14% Similarity=0.194 Sum_probs=88.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCeeCCCCCHHHHhcc---eEEEeccCCCccccHHH-HHH
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIE--RFYEPLSGEILLDGNNIKGLDLKWLRQQ---IGLVNQEPALFATTIRE-NIL 479 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~--~~~~p~~G~I~idG~di~~~~~~~lr~~---i~~V~Q~~~Lf~~TIre-NI~ 479 (876)
=+++|..+.|.|++||||||+..-.+ |.-+..+..+++... -++++++++ +|+-.|+.. .+ ++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~------~~g~l~ 86 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLV------DEGKLF 86 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHh------hcCceE
Confidence 48899999999999999999998763 444444556666552 344444443 333332211 00 111
Q ss_pred cCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHH
Q 002817 480 YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS--RAIVKNPSILLLDEATSALDAESEN 557 (876)
Q Consensus 480 ~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA--RAl~~~p~IllLDE~tSaLD~~te~ 557 (876)
+ .+...........+..++ +.........+|+||+||+.|+ .++..+|+.+ ....+
T Consensus 87 ~-~~~~~~~~~~~~~~~~~l-----------~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~ 144 (484)
T TIGR02655 87 I-LDASPDPEGQDVVGGFDL-----------SALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRR 144 (484)
T ss_pred E-EecCchhccccccccCCH-----------HHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHH
Confidence 1 000000000001111111 2222222357899999999999 6776665533 34556
Q ss_pred HHHHHHHHhc-CCCeEEEEcCCchh--------h-hh-cCEEEEEe
Q 002817 558 SVQEALDRVM-VGRTTVVVAHRLST--------I-RN-ADVIAVVQ 592 (876)
Q Consensus 558 ~i~~~l~~~~-~~~T~I~ItHrls~--------i-~~-aD~Iivl~ 592 (876)
.+.+.++.+. .++|+|+++|+.+. + .. ||.|+.|+
T Consensus 145 ~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 6666665543 58999999998753 2 32 79999887
No 499
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.33 E-value=0.0017 Score=66.54 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=95.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002817 67 VHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSML- 145 (876)
Q Consensus 67 ~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~- 145 (876)
...+...+.|++.|..||.+..+. . .....+..+.++..+....+.. +-.|+-.+++.++-..+.
T Consensus 21 aEn~l~l~yPl~~G~AIn~ll~g~-----~-----~~~~~~~~~~l~~~~igaaRR~----~DTRvf~rIy~~la~~vi~ 86 (237)
T PF13748_consen 21 AENVLLLLYPLFIGFAINALLNGD-----V-----WQALMYAALVLLMWAIGAARRI----YDTRVFSRIYAELAVPVIL 86 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-----H-----HHHHHHHHHHHHHHHHhhhhHH----HhhHHHHHHHHHHhHHHHH
Confidence 344555556678999999986432 1 1223333443444444444332 334455555555544422
Q ss_pred cCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 146 NQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYV 225 (876)
Q Consensus 146 ~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~ 225 (876)
++. .+. .+++++..|++ =...+-+++.+.+|.++.+++.++++.++++.++.++++.+++.+.++.++...+.++
T Consensus 87 ~qr---~~~-~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i~~~f~~~ 161 (237)
T PF13748_consen 87 SQR---QQG-LSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLILPRFARR 161 (237)
T ss_pred HHH---HhC-CChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 122 37788999984 4677888999999999999999999999999999999988887776666666666555
Q ss_pred HHHHHHHHH
Q 002817 226 TIGLIARVR 234 (876)
Q Consensus 226 ~~~~~~~~~ 234 (876)
..+...+.+
T Consensus 162 ~~~L~~~LN 170 (237)
T PF13748_consen 162 NYRLYRRLN 170 (237)
T ss_pred HHHHHHHHh
Confidence 444443333
No 500
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.28 E-value=1.2e-06 Score=89.97 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=71.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc---cccHHHHHHcCCCCCCHH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF---ATTIRENILYGKDDATME 488 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf---~~TIreNI~~g~~~~~~~ 488 (876)
+++|+||+||||||+++.+.+.+.+..| +.+-..|........+.+..++++|++.+. ++.+. -...++
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~ 74 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPH-------TAIRED 74 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCcc-------ceeccC
Confidence 6899999999999999999999888655 555556666655666667779999987652 11111 112334
Q ss_pred HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 489 ~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
-...++.+.. ++..+|+++.+.|+-.|..||.--
T Consensus 75 ~~~~~~~L~~---l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 75 ASMNLEAVAE---MEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHHHHHH---HHhcCCCCCEEEEECCCCCccccc
Confidence 4444554443 356778888899998887776554
Done!