Query 002817
Match_columns 876
No_of_seqs 521 out of 3540
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 02:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3E-129 1E-133 1244.8 99.0 823 37-861 56-917 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 3E-113 9E-118 1095.0 81.3 822 39-863 31-874 (1284)
3 4f4c_A Multidrug resistance pr 100.0 2.6E-99 9E-104 968.2 55.3 577 41-623 738-1319(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-93 3.9E-98 848.9 70.4 568 44-621 12-579 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 1.3E-93 4.5E-98 850.9 65.6 570 41-622 23-592 (598)
6 4a82_A Cystic fibrosis transme 100.0 2.4E-93 8.2E-98 846.0 67.4 571 43-620 2-576 (578)
7 3b5x_A Lipid A export ATP-bind 100.0 3.1E-90 1.1E-94 820.7 77.6 568 42-621 12-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 2.5E-90 8.5E-95 823.6 76.0 574 43-621 7-584 (595)
9 3b60_A Lipid A export ATP-bind 100.0 4.2E-90 1.4E-94 819.5 72.2 567 42-620 12-579 (582)
10 3g5u_A MCG1178, multidrug resi 100.0 1.9E-86 6.4E-91 847.5 57.8 580 41-623 691-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 5.5E-69 1.9E-73 582.4 28.2 278 341-622 14-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 9.2E-57 3.2E-61 475.0 31.8 240 380-620 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 4.2E-56 1.4E-60 473.6 29.1 240 380-621 16-255 (260)
14 2ixe_A Antigen peptide transpo 100.0 2.7E-55 9.3E-60 469.9 28.4 241 379-620 14-257 (271)
15 1mv5_A LMRA, multidrug resista 100.0 8.8E-56 3E-60 467.1 21.5 234 382-618 2-236 (243)
16 3gd7_A Fusion complex of cysti 100.0 4.2E-53 1.4E-57 472.1 27.0 233 379-614 17-249 (390)
17 2pze_A Cystic fibrosis transme 100.0 9.2E-52 3.1E-56 432.3 26.6 222 380-617 5-227 (229)
18 2cbz_A Multidrug resistance-as 100.0 4.9E-52 1.7E-56 436.4 24.3 224 381-620 3-229 (237)
19 3tui_C Methionine import ATP-b 100.0 1.6E-49 5.3E-54 436.8 25.3 225 380-615 23-261 (366)
20 1ji0_A ABC transporter; ATP bi 100.0 7.2E-49 2.5E-53 413.3 26.0 219 381-608 6-229 (240)
21 3tif_A Uncharacterized ABC tra 100.0 3.4E-49 1.2E-53 414.2 22.6 215 382-606 2-233 (235)
22 3gfo_A Cobalt import ATP-bindi 100.0 4.5E-49 1.5E-53 421.3 23.6 215 381-608 7-234 (275)
23 2olj_A Amino acid ABC transpor 100.0 3.9E-48 1.3E-52 411.7 24.4 214 381-608 24-249 (263)
24 2bbs_A Cystic fibrosis transme 100.0 2.4E-48 8.4E-53 418.8 22.9 216 379-615 38-254 (290)
25 3fvq_A Fe(3+) IONS import ATP- 100.0 6.7E-48 2.3E-52 423.9 26.7 221 381-615 4-236 (359)
26 4g1u_C Hemin import ATP-bindin 100.0 3.8E-48 1.3E-52 413.1 23.8 213 381-607 11-237 (266)
27 3rlf_A Maltose/maltodextrin im 100.0 4.8E-48 1.6E-52 427.8 24.0 219 381-615 3-231 (381)
28 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-47 5E-52 406.0 23.4 213 380-607 14-235 (256)
29 1b0u_A Histidine permease; ABC 100.0 1.5E-47 5.1E-52 408.2 23.6 217 381-610 6-245 (262)
30 2yz2_A Putative ABC transporte 100.0 2.5E-47 8.6E-52 407.6 24.7 213 382-608 3-228 (266)
31 2pcj_A ABC transporter, lipopr 100.0 1.3E-47 4.5E-52 399.4 21.4 208 381-602 4-223 (224)
32 2yyz_A Sugar ABC transporter, 100.0 5.8E-47 2E-51 418.1 27.2 217 381-613 3-229 (359)
33 1g6h_A High-affinity branched- 100.0 3.6E-47 1.2E-51 404.5 24.2 214 381-604 7-239 (257)
34 2it1_A 362AA long hypothetical 100.0 2.8E-47 9.6E-52 421.0 24.1 217 381-613 3-229 (362)
35 1z47_A CYSA, putative ABC-tran 100.0 5.2E-47 1.8E-51 417.3 24.8 219 380-613 13-241 (355)
36 2ihy_A ABC transporter, ATP-bi 100.0 2.3E-47 7.9E-52 409.6 20.8 213 381-607 21-252 (279)
37 3d31_A Sulfate/molybdate ABC t 100.0 8.4E-47 2.9E-51 415.5 25.6 215 382-613 2-223 (348)
38 1v43_A Sugar-binding transport 100.0 1.3E-46 4.5E-51 417.1 26.4 217 381-613 11-237 (372)
39 1oxx_K GLCV, glucose, ABC tran 100.0 6.7E-47 2.3E-51 418.0 23.6 219 381-613 3-236 (353)
40 2onk_A Molybdate/tungstate ABC 100.0 7.9E-47 2.7E-51 396.8 22.8 208 382-608 2-217 (240)
41 2qi9_C Vitamin B12 import ATP- 100.0 1.8E-46 6E-51 396.0 23.6 208 381-607 4-222 (249)
42 1g29_1 MALK, maltose transport 100.0 1.6E-46 5.3E-51 417.5 22.9 217 381-613 3-235 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 2E-46 6.7E-51 397.2 20.2 210 382-604 4-230 (250)
44 2zu0_C Probable ATP-dependent 100.0 4E-45 1.4E-49 390.5 25.8 216 381-606 20-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 1.5E-45 5.2E-50 391.8 19.8 209 382-608 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 2.6E-45 8.9E-50 388.6 20.2 200 381-607 4-217 (253)
47 1sgw_A Putative ABC transporte 100.0 2.4E-44 8.3E-49 370.7 15.0 196 381-597 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 8.5E-43 2.9E-47 376.0 -17.6 236 314-620 38-275 (305)
49 3bk7_A ABC transporter ATP-bin 100.0 1.6E-35 5.6E-40 349.3 16.5 199 381-607 357-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.3E-35 1.1E-39 342.5 17.5 199 381-606 269-476 (538)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-35 6.5E-40 345.5 15.5 199 381-607 287-493 (538)
52 2iw3_A Elongation factor 3A; a 100.0 4.8E-35 1.7E-39 355.7 14.9 205 381-601 671-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 5.6E-34 1.9E-38 335.5 15.3 198 385-608 350-560 (608)
54 3bk7_A ABC transporter ATP-bin 100.0 3.8E-34 1.3E-38 337.7 12.6 197 381-594 83-304 (607)
55 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-33 4.1E-38 340.8 15.9 205 397-610 31-301 (670)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-33 4.4E-38 340.5 15.8 201 397-608 335-641 (670)
57 2iw3_A Elongation factor 3A; a 100.0 1.3E-32 4.5E-37 334.5 24.3 197 380-607 434-635 (986)
58 1yqt_A RNAse L inhibitor; ATP- 100.0 7.4E-34 2.5E-38 332.1 11.0 196 382-594 21-234 (538)
59 3pih_A Uvrabc system protein A 100.0 1.2E-32 4E-37 335.1 19.0 207 398-615 598-909 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 1.5E-31 5.2E-36 314.9 15.2 197 386-597 82-300 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 8E-32 2.7E-36 313.9 11.4 192 386-595 4-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 2.2E-30 7.5E-35 312.7 18.2 210 380-608 501-828 (842)
63 2npi_A Protein CLP1; CLP1-PCF1 100.0 6.4E-34 2.2E-38 325.1 -14.1 179 402-607 130-338 (460)
64 4aby_A DNA repair protein RECN 100.0 2.5E-30 8.7E-35 294.9 15.2 201 399-600 50-381 (415)
65 2r6f_A Excinuclease ABC subuni 100.0 6.2E-30 2.1E-34 308.3 17.4 215 381-615 629-949 (972)
66 2ygr_A Uvrabc system protein A 100.0 2.4E-29 8.2E-34 304.3 18.1 215 380-614 646-966 (993)
67 1e69_A Chromosome segregation 100.0 3.6E-28 1.2E-32 267.3 14.5 194 402-596 17-301 (322)
68 3b85_A Phosphate starvation-in 99.9 6E-29 2.1E-33 255.0 -5.4 157 397-594 13-170 (208)
69 1z6g_A Guanylate kinase; struc 99.9 4.4E-30 1.5E-34 266.4 -16.0 165 399-593 12-193 (218)
70 4gp7_A Metallophosphoesterase; 99.9 1.9E-26 6.6E-31 229.8 2.7 149 402-588 1-168 (171)
71 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.5E-24 5.3E-29 241.9 17.9 83 516-598 275-364 (365)
72 1ye8_A Protein THEP1, hypothet 99.9 2.4E-26 8.3E-31 230.1 2.3 147 412-598 2-159 (178)
73 2pt7_A CAG-ALFA; ATPase, prote 99.9 3.3E-27 1.1E-31 259.5 -4.6 141 384-596 151-292 (330)
74 2dpy_A FLII, flagellum-specifi 99.9 1.1E-26 3.7E-31 264.0 -8.0 195 380-607 130-344 (438)
75 1tq4_A IIGP1, interferon-induc 99.9 7.9E-26 2.7E-30 253.7 -7.9 167 397-588 36-247 (413)
76 2vf7_A UVRA2, excinuclease ABC 99.9 4.2E-23 1.4E-27 249.3 13.6 95 514-608 373-476 (842)
77 2eyu_A Twitching motility prot 99.9 4.6E-26 1.6E-30 242.1 -14.6 174 398-580 15-241 (261)
78 2f1r_A Molybdopterin-guanine d 99.9 3.1E-25 1.1E-29 220.0 -9.2 111 411-542 3-125 (171)
79 3aez_A Pantothenate kinase; tr 99.9 2.8E-25 9.5E-30 241.9 -10.6 142 377-553 39-209 (312)
80 2ewv_A Twitching motility prot 99.9 2.1E-25 7.1E-30 249.2 -14.3 175 398-581 126-353 (372)
81 2o5v_A DNA replication and rep 99.9 1.3E-21 4.4E-26 216.2 13.3 82 520-606 265-355 (359)
82 3sop_A Neuronal-specific septi 99.9 1.6E-23 5.6E-28 223.5 -3.0 146 412-582 4-153 (270)
83 3b9q_A Chloroplast SRP recepto 99.9 3.5E-23 1.2E-27 224.3 -0.7 173 401-597 91-285 (302)
84 1lvg_A Guanylate kinase, GMP k 99.8 2.9E-24 1E-28 219.2 -10.9 159 407-593 1-173 (198)
85 2og2_A Putative signal recogni 99.8 3.7E-22 1.3E-26 220.1 0.7 172 401-596 148-341 (359)
86 2i3b_A HCR-ntpase, human cance 99.8 7.8E-23 2.7E-27 206.3 -6.7 158 410-600 1-169 (189)
87 1znw_A Guanylate kinase, GMP k 99.8 8.1E-23 2.8E-27 210.1 -7.0 175 397-592 9-202 (207)
88 2obl_A ESCN; ATPase, hydrolase 99.8 1.9E-21 6.4E-26 214.6 0.4 194 381-606 45-254 (347)
89 3pih_A Uvrabc system protein A 99.8 1E-20 3.6E-25 230.3 4.9 160 429-610 387-563 (916)
90 2gza_A Type IV secretion syste 99.8 2.1E-23 7.3E-28 232.3 -18.5 223 305-534 53-301 (361)
91 1lw7_A Transcriptional regulat 99.8 1.9E-21 6.6E-26 217.5 -6.3 148 399-548 157-329 (365)
92 4ad8_A DNA repair protein RECN 99.8 4.8E-19 1.7E-23 207.0 12.8 77 519-595 395-474 (517)
93 3asz_A Uridine kinase; cytidin 99.8 2.2E-21 7.4E-26 199.8 -6.8 144 407-579 3-161 (211)
94 1cr0_A DNA primase/helicase; R 99.8 3.3E-19 1.1E-23 193.5 9.5 181 398-596 23-237 (296)
95 3qkt_A DNA double-strand break 99.8 3.8E-18 1.3E-22 188.7 17.7 75 518-592 246-327 (339)
96 2o8b_B DNA mismatch repair pro 99.8 9.9E-19 3.4E-23 216.7 12.8 171 380-603 749-938 (1022)
97 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-20 4.1E-25 221.0 -4.6 168 397-595 25-211 (525)
98 2r6f_A Excinuclease ABC subuni 99.8 1.2E-18 4.2E-23 210.4 11.3 152 434-608 432-601 (972)
99 2jeo_A Uridine-cytidine kinase 99.7 5.8E-20 2E-24 193.8 -2.2 167 396-607 11-187 (245)
100 1tf7_A KAIC; homohexamer, hexa 99.7 1.7E-18 5.7E-23 202.8 9.1 152 404-595 275-444 (525)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.5E-18 1.5E-22 164.1 10.2 88 509-596 41-142 (148)
102 1pzn_A RAD51, DNA repair and r 99.7 2.2E-19 7.7E-24 198.8 0.7 166 399-606 119-314 (349)
103 1w1w_A Structural maintenance 99.7 6E-18 2.1E-22 193.3 10.3 73 520-592 333-410 (430)
104 2ygr_A Uvrabc system protein A 99.7 2.7E-17 9.2E-22 199.5 16.4 136 468-608 465-618 (993)
105 3thx_A DNA mismatch repair pro 99.7 3.1E-17 1.1E-21 200.8 17.0 168 380-606 630-812 (934)
106 1ewq_A DNA mismatch repair pro 99.7 3.9E-18 1.3E-22 205.3 8.2 159 379-599 548-716 (765)
107 3szr_A Interferon-induced GTP- 99.7 8.9E-20 3.1E-24 216.3 -6.5 191 381-607 10-237 (608)
108 1odf_A YGR205W, hypothetical 3 99.7 6.9E-20 2.4E-24 197.3 -7.0 129 409-555 30-169 (290)
109 4a74_A DNA repair and recombin 99.7 2.5E-18 8.7E-23 178.8 4.6 148 406-595 21-201 (231)
110 1rj9_A FTSY, signal recognitio 99.7 5.3E-18 1.8E-22 183.7 5.7 149 409-581 101-260 (304)
111 1pui_A ENGB, probable GTP-bind 99.7 6.1E-19 2.1E-23 180.8 -3.5 169 382-567 4-197 (210)
112 3jvv_A Twitching mobility prot 99.7 6.3E-18 2.2E-22 186.8 4.4 147 385-594 92-246 (356)
113 2ehv_A Hypothetical protein PH 99.7 1.2E-18 4E-23 183.8 -1.7 181 382-593 7-207 (251)
114 2qag_C Septin-7; cell cycle, c 99.7 2.9E-18 1E-22 193.0 -0.9 166 380-582 10-180 (418)
115 3kta_B Chromosome segregation 99.7 1.3E-16 4.4E-21 158.0 10.3 79 518-596 62-146 (173)
116 2qnr_A Septin-2, protein NEDD5 99.6 8.3E-18 2.8E-22 182.5 -2.8 163 385-581 2-169 (301)
117 3c8u_A Fructokinase; YP_612366 99.6 2.5E-19 8.5E-24 184.1 -14.9 150 407-580 19-184 (208)
118 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.5E-16 8.5E-21 163.8 4.6 166 397-595 9-193 (235)
119 1nij_A Hypothetical protein YJ 99.6 6E-18 2E-22 185.3 -9.0 149 411-579 5-189 (318)
120 1s96_A Guanylate kinase, GMP k 99.6 1E-16 3.5E-21 165.5 0.6 143 405-607 11-160 (219)
121 3thx_B DNA mismatch repair pro 99.6 9.6E-16 3.3E-20 187.1 8.2 168 381-597 640-815 (918)
122 1zp6_A Hypothetical protein AT 99.6 9.2E-17 3.1E-21 162.2 -2.0 138 406-565 5-146 (191)
123 2cvh_A DNA repair and recombin 99.6 3.9E-15 1.3E-19 153.5 8.6 151 398-594 7-185 (220)
124 1wb9_A DNA mismatch repair pro 99.6 1.1E-15 3.8E-20 185.1 5.1 166 380-599 576-750 (800)
125 2qag_B Septin-6, protein NEDD5 99.5 5.7E-16 1.9E-20 173.5 1.5 179 381-577 16-217 (427)
126 1nlf_A Regulatory protein REPA 99.5 1.4E-14 4.9E-19 155.5 9.4 151 406-582 26-184 (279)
127 2yhs_A FTSY, cell division pro 99.5 2.6E-14 9E-19 161.8 6.1 154 400-577 283-447 (503)
128 1n0w_A DNA repair protein RAD5 99.5 6.4E-14 2.2E-18 146.7 7.9 146 406-594 20-209 (243)
129 2qm8_A GTPase/ATPase; G protei 99.4 2.6E-16 8.9E-21 173.3 -11.6 176 384-566 32-258 (337)
130 2bdt_A BH3686; alpha-beta prot 99.4 3.6E-16 1.2E-20 157.7 -13.3 168 410-606 2-183 (189)
131 3qf4_B Uncharacterized ABC tra 99.4 2E-11 7E-16 144.7 24.8 174 683-860 24-197 (598)
132 2oap_1 GSPE-2, type II secreti 99.4 2.2E-15 7.5E-20 174.3 -10.6 172 397-584 247-455 (511)
133 3auy_A DNA double-strand break 99.4 9.7E-13 3.3E-17 147.1 10.9 74 519-592 279-359 (371)
134 1p9r_A General secretion pathw 99.4 1.1E-15 3.8E-20 172.2 -13.7 128 399-543 158-314 (418)
135 2rcn_A Probable GTPase ENGC; Y 99.4 2.6E-13 9.1E-18 149.0 5.4 122 399-536 205-329 (358)
136 1htw_A HI0065; nucleotide-bind 99.4 3.5E-14 1.2E-18 138.6 -1.6 88 385-481 11-99 (158)
137 3e70_C DPA, signal recognition 99.3 7.3E-13 2.5E-17 144.7 6.7 147 406-578 125-278 (328)
138 1sxj_E Activator 1 40 kDa subu 99.3 7.1E-13 2.4E-17 147.1 6.7 139 411-582 37-177 (354)
139 2bbw_A Adenylate kinase 4, AK4 99.3 4.9E-14 1.7E-18 148.4 -3.2 167 409-593 26-218 (246)
140 3qf4_A ABC transporter, ATP-bi 99.3 3.3E-11 1.1E-15 142.6 19.1 171 685-859 12-182 (587)
141 3lda_A DNA repair protein RAD5 99.3 2E-12 6.9E-17 144.8 7.4 147 406-595 174-364 (400)
142 3lnc_A Guanylate kinase, GMP k 99.3 5.9E-15 2E-19 153.9 -13.5 146 398-566 15-176 (231)
143 3b5x_A Lipid A export ATP-bind 99.3 3.8E-10 1.3E-14 133.5 25.0 170 684-858 13-183 (582)
144 2kjq_A DNAA-related protein; s 99.3 3.9E-12 1.3E-16 123.0 6.6 91 399-578 30-124 (149)
145 2yl4_A ATP-binding cassette SU 99.2 4.3E-10 1.5E-14 133.4 22.3 172 685-858 8-180 (595)
146 3b60_A Lipid A export ATP-bind 99.2 5.9E-10 2E-14 131.9 22.9 170 684-858 13-183 (582)
147 3ec2_A DNA replication protein 99.2 8.3E-12 2.8E-16 124.6 6.0 111 404-580 32-144 (180)
148 4a82_A Cystic fibrosis transme 99.2 1.5E-10 5.1E-15 136.8 17.6 173 685-859 3-180 (578)
149 1cke_A CK, MSSA, protein (cyti 99.2 4E-13 1.4E-17 139.2 -4.0 129 409-549 4-151 (227)
150 2x8a_A Nuclear valosin-contain 99.2 2.8E-14 9.6E-19 152.6 -13.4 143 398-563 34-190 (274)
151 1sq5_A Pantothenate kinase; P- 99.2 1.4E-13 4.7E-18 149.9 -8.4 140 379-553 35-199 (308)
152 2yv5_A YJEQ protein; hydrolase 99.2 1.1E-12 3.7E-17 142.3 -1.4 116 405-533 160-300 (302)
153 3tr0_A Guanylate kinase, GMP k 99.1 3.9E-11 1.4E-15 122.0 6.4 152 404-564 1-185 (205)
154 4e22_A Cytidylate kinase; P-lo 99.1 8.3E-12 2.8E-16 131.8 1.0 110 398-517 18-145 (252)
155 1udx_A The GTP-binding protein 99.1 2.1E-11 7.2E-16 137.1 3.5 154 400-577 147-306 (416)
156 1u0l_A Probable GTPase ENGC; p 99.1 1.5E-11 5.2E-16 133.2 0.9 103 405-508 164-290 (301)
157 2px0_A Flagellar biosynthesis 99.0 4.3E-10 1.5E-14 121.2 8.8 138 408-598 103-246 (296)
158 1vma_A Cell division protein F 99.0 1.5E-10 5.2E-15 125.1 4.9 98 403-549 97-197 (306)
159 1ls1_A Signal recognition part 99.0 1.8E-10 6.3E-15 124.2 5.3 132 382-566 77-209 (295)
160 3a00_A Guanylate kinase, GMP k 99.0 2E-11 6.8E-16 122.6 -2.6 128 410-546 1-169 (186)
161 3euj_A Chromosome partition pr 99.0 2.3E-10 8E-15 130.2 4.3 69 399-468 19-95 (483)
162 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 5.9E-12 2E-16 140.2 -10.0 169 406-603 16-209 (392)
163 1iy2_A ATP-dependent metallopr 98.9 2.9E-12 1E-16 137.3 -13.3 136 383-547 51-194 (278)
164 3ney_A 55 kDa erythrocyte memb 98.9 1.3E-10 4.3E-15 117.1 -1.6 73 405-483 14-99 (197)
165 1ixz_A ATP-dependent metallopr 98.9 3.6E-12 1.2E-16 134.6 -14.1 138 382-548 26-171 (254)
166 1t9h_A YLOQ, probable GTPase E 98.8 5.5E-10 1.9E-14 120.4 1.8 73 405-479 168-248 (307)
167 2ius_A DNA translocase FTSK; n 98.8 1.6E-10 5.4E-15 132.5 -3.3 162 402-580 159-343 (512)
168 1in4_A RUVB, holliday junction 98.8 2.6E-11 8.7E-16 133.6 -11.2 154 385-566 22-192 (334)
169 1qhl_A Protein (cell division 98.7 3.3E-10 1.1E-14 116.9 -3.7 75 381-466 9-91 (227)
170 2zr9_A Protein RECA, recombina 98.7 2.5E-08 8.5E-13 109.9 10.9 144 406-601 57-237 (349)
171 1oix_A RAS-related protein RAB 98.7 2.1E-10 7.3E-15 115.4 -5.2 143 412-565 31-188 (191)
172 2dr3_A UPF0273 protein PH0284; 98.7 3.1E-09 1.1E-13 111.0 3.3 166 399-593 11-196 (247)
173 1kgd_A CASK, peripheral plasma 98.7 4.1E-10 1.4E-14 112.4 -3.5 80 408-494 3-93 (180)
174 2r6a_A DNAB helicase, replicat 98.7 2.2E-08 7.6E-13 114.7 9.9 177 398-596 191-401 (454)
175 3k1j_A LON protease, ATP-depen 98.7 7.6E-10 2.6E-14 131.5 -2.5 151 397-565 47-227 (604)
176 2dy1_A Elongation factor G; tr 98.7 3.6E-09 1.2E-13 126.7 2.9 132 404-581 3-138 (665)
177 2qt1_A Nicotinamide riboside k 98.7 4.4E-09 1.5E-13 107.2 2.2 105 405-549 16-120 (207)
178 1svm_A Large T antigen; AAA+ f 98.6 4.5E-10 1.5E-14 124.7 -8.8 132 398-549 157-312 (377)
179 3tau_A Guanylate kinase, GMP k 98.6 3.9E-09 1.3E-13 107.8 -1.9 72 408-483 6-88 (208)
180 3t34_A Dynamin-related protein 98.5 6.4E-08 2.2E-12 107.5 5.4 46 398-446 25-72 (360)
181 2ce7_A Cell division protein F 98.4 2.6E-07 9E-12 105.5 8.8 114 399-583 40-168 (476)
182 3cr8_A Sulfate adenylyltranfer 98.4 1.4E-08 4.7E-13 118.2 -3.1 72 405-481 364-447 (552)
183 2f9l_A RAB11B, member RAS onco 98.4 6.2E-08 2.1E-12 97.7 2.1 138 412-565 7-164 (199)
184 3uie_A Adenylyl-sulfate kinase 98.4 1.7E-08 6E-13 102.2 -3.4 52 397-449 12-65 (200)
185 3nwj_A ATSK2; P loop, shikimat 98.4 5.1E-08 1.7E-12 102.2 0.0 52 381-434 17-72 (250)
186 2qtf_A Protein HFLX, GTP-bindi 98.4 1.1E-07 3.6E-12 105.5 2.6 141 412-566 181-351 (364)
187 3kta_A Chromosome segregation 98.4 4.4E-08 1.5E-12 97.4 -0.5 66 401-467 18-89 (182)
188 2dhr_A FTSH; AAA+ protein, hex 98.3 1.3E-08 4.5E-13 116.9 -5.4 127 398-550 54-188 (499)
189 2j41_A Guanylate kinase; GMP, 98.3 2.1E-07 7.3E-12 94.2 3.8 60 405-467 1-60 (207)
190 4eun_A Thermoresistant glucoki 98.3 9.4E-08 3.2E-12 96.8 0.5 59 404-468 23-82 (200)
191 3vaa_A Shikimate kinase, SK; s 98.3 2.2E-07 7.6E-12 93.9 2.9 45 390-434 5-49 (199)
192 1zu4_A FTSY; GTPase, signal re 98.3 2.3E-07 7.8E-12 100.9 2.8 69 400-468 95-173 (320)
193 1jjv_A Dephospho-COA kinase; P 98.2 5.6E-07 1.9E-11 91.3 3.7 69 521-592 60-131 (206)
194 2e87_A Hypothetical protein PH 98.2 3.8E-06 1.3E-10 93.0 9.6 60 519-579 230-292 (357)
195 3ice_A Transcription terminati 98.2 2.1E-07 7.3E-12 101.5 -0.7 56 378-435 130-199 (422)
196 3tqc_A Pantothenate kinase; bi 98.1 7.5E-08 2.6E-12 104.4 -4.9 124 398-553 74-211 (321)
197 2xau_A PRE-mRNA-splicing facto 98.1 2.2E-06 7.4E-11 104.3 7.0 65 519-583 189-256 (773)
198 3hr8_A Protein RECA; alpha and 98.1 1.4E-05 4.6E-10 87.8 11.5 59 406-467 57-116 (356)
199 2vp4_A Deoxynucleoside kinase; 98.1 1.4E-07 4.7E-12 97.9 -4.4 65 403-471 13-87 (230)
200 2ffh_A Protein (FFH); SRP54, s 98.1 9.4E-06 3.2E-10 91.2 10.2 161 384-577 79-246 (425)
201 2z43_A DNA repair and recombin 98.1 2.3E-06 7.8E-11 93.4 5.0 29 406-434 103-131 (324)
202 2eyu_A Twitching motility prot 98.0 1.8E-06 6E-11 91.2 2.4 60 528-593 88-147 (261)
203 3m6a_A ATP-dependent protease 98.0 2.1E-06 7.3E-11 100.3 2.8 47 398-445 97-143 (543)
204 1uf9_A TT1252 protein; P-loop, 98.0 1E-07 3.5E-12 96.3 -7.6 33 410-447 8-40 (203)
205 4a1f_A DNAB helicase, replicat 97.9 2.7E-05 9.3E-10 84.8 9.3 106 399-552 35-141 (338)
206 3kl4_A SRP54, signal recogniti 97.9 1.5E-05 5.2E-10 89.6 7.2 40 409-448 96-135 (433)
207 1fnn_A CDC6P, cell division co 97.8 8.2E-05 2.8E-09 82.6 12.4 45 537-582 124-172 (389)
208 1rz3_A Hypothetical protein rb 97.8 5.5E-06 1.9E-10 83.8 1.8 47 406-452 18-64 (201)
209 1knq_A Gluconate kinase; ALFA/ 97.8 5.8E-06 2E-10 81.3 1.8 38 408-449 6-43 (175)
210 3b9p_A CG5977-PA, isoform A; A 97.6 0.00012 4.2E-09 78.3 9.2 71 522-592 97-187 (297)
211 3lxx_A GTPase IMAP family memb 97.6 0.00032 1.1E-08 72.6 11.9 29 412-440 31-59 (239)
212 2pez_A Bifunctional 3'-phospho 97.6 7.4E-06 2.5E-10 81.0 -0.6 41 408-449 3-45 (179)
213 1sxj_C Activator 1 40 kDa subu 97.6 1.8E-05 6E-10 86.9 1.7 43 398-440 32-76 (340)
214 1v5w_A DMC1, meiotic recombina 97.6 4.6E-05 1.6E-09 83.7 5.0 28 406-433 118-145 (343)
215 1ypw_A Transitional endoplasmi 97.5 2.2E-05 7.6E-10 95.9 2.4 32 405-436 233-264 (806)
216 1lv7_A FTSH; alpha/beta domain 97.5 0.0003 1E-08 73.6 10.6 45 400-448 37-81 (257)
217 1mky_A Probable GTP-binding pr 97.4 8E-05 2.7E-09 84.7 4.8 70 412-481 182-264 (439)
218 1ega_A Protein (GTP-binding pr 97.4 0.00014 4.7E-09 78.3 6.3 129 409-567 7-143 (301)
219 2z4s_A Chromosomal replication 97.4 0.00013 4.3E-09 83.0 6.3 68 536-603 191-264 (440)
220 1m7g_A Adenylylsulfate kinase; 97.3 3.2E-05 1.1E-09 78.7 0.3 43 405-447 20-64 (211)
221 2qby_A CDC6 homolog 1, cell di 97.3 7.6E-05 2.6E-09 82.6 3.3 31 408-438 43-73 (386)
222 1f6b_A SAR1; gtpases, N-termin 97.3 6.1E-05 2.1E-09 75.6 2.3 42 388-432 6-47 (198)
223 2p67_A LAO/AO transport system 97.3 3.4E-05 1.2E-09 84.7 0.4 50 398-447 44-93 (341)
224 2qor_A Guanylate kinase; phosp 97.3 4E-05 1.4E-09 77.4 0.9 30 406-435 8-37 (204)
225 3bh0_A DNAB-like replicative h 97.3 0.00022 7.5E-09 77.3 6.7 107 398-550 56-163 (315)
226 3r20_A Cytidylate kinase; stru 97.3 1.5E-05 5.2E-10 82.2 -2.4 69 410-478 9-95 (233)
227 4eaq_A DTMP kinase, thymidylat 97.3 7.2E-05 2.5E-09 77.2 2.3 43 400-443 13-58 (229)
228 3llm_A ATP-dependent RNA helic 97.3 0.00029 9.8E-09 72.8 6.4 129 406-570 72-209 (235)
229 2w58_A DNAI, primosome compone 97.2 0.00031 1.1E-08 70.5 5.8 27 411-437 55-81 (202)
230 1l8q_A Chromosomal replication 97.2 0.00032 1.1E-08 76.2 6.1 29 409-437 36-64 (324)
231 1kag_A SKI, shikimate kinase I 97.2 0.00016 5.6E-09 70.5 3.2 33 409-445 3-35 (173)
232 2www_A Methylmalonic aciduria 97.2 9.8E-05 3.4E-09 81.2 1.6 42 408-449 72-113 (349)
233 1m2o_B GTP-binding protein SAR 97.1 0.00028 9.6E-09 70.1 4.6 33 399-432 13-45 (190)
234 3cf0_A Transitional endoplasmi 97.1 0.00086 2.9E-08 72.0 8.8 39 405-445 44-82 (301)
235 1u94_A RECA protein, recombina 97.1 0.0024 8.1E-08 70.2 11.8 35 399-434 50-87 (356)
236 2gj8_A MNME, tRNA modification 97.1 0.00037 1.3E-08 68.1 4.6 27 408-434 2-28 (172)
237 3bos_A Putative DNA replicatio 97.1 0.00025 8.4E-09 72.9 3.4 28 409-436 51-78 (242)
238 3h4m_A Proteasome-activating n 97.0 0.0013 4.6E-08 69.6 9.1 28 407-434 48-75 (285)
239 4dcu_A GTP-binding protein ENG 97.0 0.00063 2.2E-08 77.6 6.5 56 524-582 88-144 (456)
240 2jaq_A Deoxyguanosine kinase; 96.9 4.4E-05 1.5E-09 76.7 -3.4 23 412-434 2-24 (205)
241 4fcw_A Chaperone protein CLPB; 96.9 0.003 1E-07 67.7 10.4 30 411-440 48-77 (311)
242 1sxj_D Activator 1 41 kDa subu 96.9 0.00027 9.2E-09 77.4 2.0 42 538-580 133-174 (353)
243 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00064 2.2E-08 65.0 3.9 30 401-431 15-44 (149)
244 1y63_A LMAJ004144AAA protein; 96.8 0.00062 2.1E-08 67.4 3.4 32 402-433 2-33 (184)
245 1j8m_F SRP54, signal recogniti 96.8 0.00024 8.1E-09 76.2 0.2 48 401-449 89-137 (297)
246 3lxw_A GTPase IMAP family memb 96.7 0.0052 1.8E-07 63.8 10.2 59 522-581 86-151 (247)
247 1lw7_A Transcriptional regulat 96.7 3.8E-05 1.3E-09 85.2 -7.0 86 520-607 258-355 (365)
248 2ohf_A Protein OLA1, GTP-bindi 96.7 0.00095 3.3E-08 74.0 4.2 41 406-446 18-69 (396)
249 2p5t_B PEZT; postsegregational 96.6 0.00053 1.8E-08 71.7 2.0 42 406-449 28-69 (253)
250 1njg_A DNA polymerase III subu 96.6 0.00064 2.2E-08 69.4 2.4 44 537-581 125-168 (250)
251 2yvu_A Probable adenylyl-sulfa 96.6 0.00062 2.1E-08 67.4 2.0 41 405-445 8-49 (186)
252 3n70_A Transport activator; si 96.6 0.0053 1.8E-07 58.0 8.5 30 408-437 22-51 (145)
253 1np6_A Molybdopterin-guanine d 96.6 0.00086 3E-08 65.8 2.9 38 410-447 6-46 (174)
254 3uk6_A RUVB-like 2; hexameric 96.6 0.0027 9.2E-08 69.9 7.3 39 408-446 68-106 (368)
255 2wji_A Ferrous iron transport 96.6 0.0019 6.6E-08 62.2 5.3 23 412-434 5-27 (165)
256 2q6t_A DNAB replication FORK h 96.5 0.0032 1.1E-07 71.4 7.7 104 399-550 189-294 (444)
257 2qag_A Septin-2, protein NEDD5 96.5 0.00028 9.7E-09 77.9 -1.5 58 379-445 15-72 (361)
258 3t61_A Gluconokinase; PSI-biol 96.5 0.0007 2.4E-08 68.0 1.5 32 410-445 18-49 (202)
259 3dm5_A SRP54, signal recogniti 96.5 0.013 4.3E-07 65.9 11.9 29 409-437 99-127 (443)
260 2wjg_A FEOB, ferrous iron tran 96.5 0.0016 5.4E-08 64.0 3.9 22 412-433 9-30 (188)
261 2i1q_A DNA repair and recombin 96.4 0.0078 2.7E-07 65.1 9.3 27 406-432 94-120 (322)
262 3d8b_A Fidgetin-like protein 1 96.4 0.0089 3E-07 65.7 9.8 27 408-434 115-141 (357)
263 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0043 1.5E-07 66.5 6.6 28 406-433 119-146 (331)
264 2v1u_A Cell division control p 96.3 0.0018 6.3E-08 71.4 3.5 29 408-436 42-70 (387)
265 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.014 4.9E-07 60.5 10.2 26 409-434 38-63 (262)
266 2zej_A Dardarin, leucine-rich 96.2 0.0023 7.8E-08 63.0 3.3 27 412-438 4-30 (184)
267 2orw_A Thymidine kinase; TMTK, 96.2 0.0061 2.1E-07 60.3 6.3 25 409-433 2-27 (184)
268 3t15_A Ribulose bisphosphate c 96.1 0.0083 2.8E-07 64.0 7.6 25 410-434 36-60 (293)
269 3ihw_A Centg3; RAS, centaurin, 96.1 0.0048 1.7E-07 60.7 5.3 35 412-446 22-65 (184)
270 3qks_A DNA double-strand break 96.1 0.0034 1.2E-07 63.2 3.9 29 402-431 16-44 (203)
271 2ewv_A Twitching motility prot 96.1 0.0019 6.7E-08 71.4 2.3 58 528-591 199-256 (372)
272 1qhx_A CPT, protein (chloramph 96.0 0.0032 1.1E-07 61.5 3.5 27 409-435 2-28 (178)
273 1gtv_A TMK, thymidylate kinase 96.0 0.0012 4.1E-08 66.7 0.4 26 412-437 2-27 (214)
274 3syl_A Protein CBBX; photosynt 96.0 0.037 1.3E-06 59.0 12.2 27 409-435 66-92 (309)
275 2if2_A Dephospho-COA kinase; a 96.0 0.0033 1.1E-07 63.0 3.3 21 412-432 3-23 (204)
276 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0016 5.6E-08 70.7 1.0 37 398-434 10-48 (359)
277 3cm0_A Adenylate kinase; ATP-b 95.9 0.0033 1.1E-07 61.8 2.9 27 408-434 2-28 (186)
278 1tue_A Replication protein E1; 95.9 0.0071 2.4E-07 60.4 5.3 28 407-434 55-82 (212)
279 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0037 1.3E-07 69.7 3.6 35 409-443 34-68 (392)
280 1ko7_A HPR kinase/phosphatase; 95.9 0.0038 1.3E-07 66.8 3.5 34 398-432 133-166 (314)
281 2chg_A Replication factor C sm 95.9 0.022 7.5E-07 56.9 9.0 43 537-580 101-143 (226)
282 1gvn_B Zeta; postsegregational 95.8 0.0043 1.5E-07 66.0 3.8 35 409-445 32-66 (287)
283 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.032 1.1E-06 60.3 10.7 27 408-434 43-69 (322)
284 3kb2_A SPBC2 prophage-derived 95.8 0.0035 1.2E-07 60.6 2.6 24 412-435 3-26 (173)
285 1ex7_A Guanylate kinase; subst 95.8 0.0039 1.3E-07 61.8 2.9 46 412-459 3-61 (186)
286 2b8t_A Thymidine kinase; deoxy 95.8 0.0088 3E-07 61.0 5.5 51 538-592 89-150 (223)
287 2v54_A DTMP kinase, thymidylat 95.7 0.0056 1.9E-07 61.1 3.9 27 408-434 2-28 (204)
288 1jal_A YCHF protein; nucleotid 95.7 0.0074 2.5E-07 66.1 5.0 36 410-445 2-48 (363)
289 1fzq_A ADP-ribosylation factor 95.7 0.0048 1.6E-07 60.5 3.2 23 411-433 17-39 (181)
290 1kht_A Adenylate kinase; phosp 95.6 0.0059 2E-07 60.1 3.6 27 409-435 2-28 (192)
291 1xp8_A RECA protein, recombina 95.6 0.032 1.1E-06 61.4 9.6 28 406-433 70-97 (366)
292 3trf_A Shikimate kinase, SK; a 95.6 0.006 2.1E-07 59.9 3.4 26 409-434 4-29 (185)
293 2rhm_A Putative kinase; P-loop 95.6 0.0058 2E-07 60.3 3.2 27 408-434 3-29 (193)
294 1xjc_A MOBB protein homolog; s 95.5 0.0053 1.8E-07 59.8 2.6 26 411-436 5-30 (169)
295 3co5_A Putative two-component 95.5 0.021 7E-07 53.8 6.5 28 408-435 25-52 (143)
296 3lw7_A Adenylate kinase relate 95.5 0.0068 2.3E-07 58.5 3.2 19 412-430 3-21 (179)
297 3iij_A Coilin-interacting nucl 95.4 0.0055 1.9E-07 60.0 2.5 27 408-434 9-35 (180)
298 1q3t_A Cytidylate kinase; nucl 95.4 0.0077 2.6E-07 62.0 3.6 28 407-434 13-40 (236)
299 2r62_A Cell division protease 95.4 0.0046 1.6E-07 64.8 1.8 32 401-434 37-68 (268)
300 2c95_A Adenylate kinase 1; tra 95.4 0.0065 2.2E-07 60.1 2.8 27 408-434 7-33 (196)
301 2wwf_A Thymidilate kinase, put 95.3 0.0092 3.1E-07 59.9 3.6 27 408-434 8-34 (212)
302 2plr_A DTMP kinase, probable t 95.3 0.0075 2.6E-07 60.4 2.9 28 409-436 3-30 (213)
303 3bgw_A DNAB-like replicative h 95.3 0.032 1.1E-06 63.1 8.3 34 399-432 186-219 (444)
304 3zvl_A Bifunctional polynucleo 95.2 0.051 1.8E-06 60.9 9.9 30 405-434 253-282 (416)
305 2qp9_X Vacuolar protein sortin 95.2 0.035 1.2E-06 60.8 8.4 27 408-434 82-108 (355)
306 1vht_A Dephospho-COA kinase; s 95.2 0.0091 3.1E-07 60.4 3.4 24 409-432 3-26 (218)
307 3cmw_A Protein RECA, recombina 95.2 0.049 1.7E-06 70.5 10.6 33 407-439 729-761 (1706)
308 1nn5_A Similar to deoxythymidy 95.2 0.01 3.4E-07 59.7 3.5 28 407-434 6-33 (215)
309 2bwj_A Adenylate kinase 5; pho 95.1 0.0047 1.6E-07 61.4 0.8 29 406-434 8-36 (199)
310 2r8r_A Sensor protein; KDPD, P 95.1 0.015 5.2E-07 59.0 4.6 25 408-432 3-28 (228)
311 2lkc_A Translation initiation 95.0 0.022 7.6E-07 54.9 5.4 26 408-433 6-31 (178)
312 2erx_A GTP-binding protein DI- 94.9 0.021 7E-07 54.6 4.8 21 412-432 5-25 (172)
313 1ly1_A Polynucleotide kinase; 94.9 0.012 4.2E-07 57.2 3.2 22 411-432 3-24 (181)
314 3cbq_A GTP-binding protein REM 94.9 0.011 3.9E-07 58.6 2.9 22 412-433 25-46 (195)
315 2dby_A GTP-binding protein; GD 94.9 0.012 4.1E-07 64.8 3.4 23 412-434 3-25 (368)
316 1via_A Shikimate kinase; struc 94.9 0.011 3.9E-07 57.4 2.9 23 412-434 6-28 (175)
317 2ze6_A Isopentenyl transferase 94.9 0.011 3.9E-07 61.5 3.0 23 412-434 3-25 (253)
318 1jr3_A DNA polymerase III subu 94.9 0.049 1.7E-06 59.6 8.3 43 538-581 119-161 (373)
319 2vli_A Antibiotic resistance p 94.9 0.0095 3.2E-07 58.3 2.2 27 408-434 3-29 (183)
320 2zan_A Vacuolar protein sortin 94.8 0.077 2.6E-06 60.0 10.0 27 408-434 165-191 (444)
321 1tev_A UMP-CMP kinase; ploop, 94.8 0.014 4.8E-07 57.5 3.3 26 409-434 2-27 (196)
322 3iby_A Ferrous iron transport 94.7 0.017 5.7E-07 60.4 3.7 23 412-434 3-25 (256)
323 2ew1_A RAS-related protein RAB 94.7 0.024 8.2E-07 56.6 4.7 22 412-433 28-49 (201)
324 1nks_A Adenylate kinase; therm 94.7 0.015 5.2E-07 57.1 3.1 24 412-435 3-26 (194)
325 1zd8_A GTP:AMP phosphotransfer 94.6 0.015 5E-07 59.4 3.1 27 408-434 5-31 (227)
326 4b4t_L 26S protease subunit RP 94.6 0.071 2.4E-06 59.8 8.9 30 406-435 211-240 (437)
327 3u61_B DNA polymerase accessor 94.6 0.044 1.5E-06 59.0 7.0 44 538-581 105-148 (324)
328 1aky_A Adenylate kinase; ATP:A 94.6 0.018 6.2E-07 58.3 3.7 27 408-434 2-28 (220)
329 1z0j_A RAB-22, RAS-related pro 94.6 0.023 7.7E-07 54.2 4.2 23 412-434 8-30 (170)
330 2qby_B CDC6 homolog 3, cell di 94.6 0.0074 2.5E-07 66.6 0.8 26 409-434 44-69 (384)
331 1ukz_A Uridylate kinase; trans 94.6 0.015 5.3E-07 57.9 3.1 26 409-434 14-39 (203)
332 3hu3_A Transitional endoplasmi 94.6 0.14 4.9E-06 58.5 11.4 28 407-434 235-262 (489)
333 3pxi_A Negative regulator of g 94.6 0.064 2.2E-06 65.1 8.9 23 412-434 523-545 (758)
334 1z2a_A RAS-related protein RAB 94.5 0.017 5.9E-07 55.0 3.2 22 412-433 7-28 (168)
335 2fn4_A P23, RAS-related protei 94.5 0.023 7.7E-07 54.9 4.0 22 412-433 11-32 (181)
336 2cdn_A Adenylate kinase; phosp 94.5 0.021 7.1E-07 56.9 3.7 26 409-434 19-44 (201)
337 1hqc_A RUVB; extended AAA-ATPa 94.5 0.083 2.8E-06 56.6 8.7 26 409-434 37-62 (324)
338 3cmu_A Protein RECA, recombina 94.5 0.049 1.7E-06 71.4 7.9 38 397-434 1066-1105(2050)
339 1zak_A Adenylate kinase; ATP:A 94.5 0.014 4.7E-07 59.3 2.4 27 409-435 4-30 (222)
340 1ksh_A ARF-like protein 2; sma 94.5 0.035 1.2E-06 54.1 5.2 25 409-433 17-41 (186)
341 1kao_A RAP2A; GTP-binding prot 94.4 0.019 6.6E-07 54.4 3.2 22 412-433 5-26 (167)
342 3eie_A Vacuolar protein sortin 94.4 0.078 2.7E-06 57.1 8.4 27 408-434 49-75 (322)
343 2oil_A CATX-8, RAS-related pro 94.4 0.026 8.8E-07 55.5 4.2 22 412-433 27-48 (193)
344 2z0h_A DTMP kinase, thymidylat 94.4 0.02 6.7E-07 56.6 3.3 24 412-435 2-25 (197)
345 2ged_A SR-beta, signal recogni 94.4 0.019 6.6E-07 56.3 3.2 24 411-434 49-72 (193)
346 3a8t_A Adenylate isopentenyltr 94.4 0.022 7.5E-07 61.5 3.8 28 408-435 38-65 (339)
347 2nzj_A GTP-binding protein REM 94.4 0.021 7.2E-07 54.8 3.4 23 412-434 6-28 (175)
348 3clv_A RAB5 protein, putative; 94.4 0.025 8.5E-07 55.7 4.0 22 412-433 9-30 (208)
349 3q72_A GTP-binding protein RAD 94.4 0.017 5.9E-07 55.0 2.7 23 412-434 4-26 (166)
350 3k53_A Ferrous iron transport 94.4 0.018 6.3E-07 60.5 3.1 24 412-435 5-28 (271)
351 3fb4_A Adenylate kinase; psych 94.4 0.016 5.3E-07 58.5 2.4 23 412-434 2-24 (216)
352 1r2q_A RAS-related protein RAB 94.3 0.028 9.5E-07 53.5 4.1 21 412-432 8-28 (170)
353 3dl0_A Adenylate kinase; phosp 94.3 0.018 6.3E-07 58.0 2.9 23 412-434 2-24 (216)
354 2ce2_X GTPase HRAS; signaling 94.3 0.02 6.7E-07 54.2 3.0 22 412-433 5-26 (166)
355 2bcg_Y Protein YP2, GTP-bindin 94.3 0.032 1.1E-06 55.5 4.7 22 412-433 10-31 (206)
356 2dyk_A GTP-binding protein; GT 94.3 0.021 7.3E-07 53.9 3.2 23 412-434 3-25 (161)
357 1u8z_A RAS-related protein RAL 94.3 0.021 7.3E-07 54.1 3.2 22 412-433 6-27 (168)
358 3q85_A GTP-binding protein REM 94.3 0.022 7.7E-07 54.3 3.3 23 412-434 4-26 (169)
359 1g16_A RAS-related protein SEC 94.2 0.021 7.1E-07 54.5 3.0 22 412-433 5-26 (170)
360 1z08_A RAS-related protein RAB 94.2 0.023 7.8E-07 54.3 3.2 22 412-433 8-29 (170)
361 2iyv_A Shikimate kinase, SK; t 94.2 0.02 6.8E-07 56.1 2.8 24 411-434 3-26 (184)
362 1c1y_A RAS-related protein RAP 94.2 0.023 7.7E-07 54.1 3.2 22 412-433 5-26 (167)
363 1ek0_A Protein (GTP-binding pr 94.2 0.023 7.8E-07 54.1 3.2 22 412-433 5-26 (170)
364 3vfd_A Spastin; ATPase, microt 94.2 0.13 4.5E-06 56.9 9.8 27 408-434 146-172 (389)
365 1ky3_A GTP-binding protein YPT 94.2 0.023 7.9E-07 54.8 3.2 22 412-433 10-31 (182)
366 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.023 8E-07 54.7 3.2 22 412-433 9-30 (177)
367 1m7b_A RND3/RHOE small GTP-bin 94.2 0.029 1E-06 54.7 3.9 22 412-433 9-30 (184)
368 1e6c_A Shikimate kinase; phosp 94.2 0.022 7.6E-07 55.0 3.0 24 411-434 3-26 (173)
369 3t5d_A Septin-7; GTP-binding p 94.1 0.02 6.8E-07 60.3 2.8 22 412-433 10-31 (274)
370 3ake_A Cytidylate kinase; CMP 94.1 0.019 6.3E-07 57.4 2.4 23 412-434 4-26 (208)
371 1qf9_A UMP/CMP kinase, protein 94.1 0.022 7.6E-07 55.9 2.9 25 410-434 6-30 (194)
372 1zuh_A Shikimate kinase; alpha 94.1 0.027 9.1E-07 54.3 3.4 25 410-434 7-31 (168)
373 3tlx_A Adenylate kinase 2; str 94.1 0.02 6.8E-07 59.2 2.7 26 409-434 28-53 (243)
374 1svi_A GTP-binding protein YSX 94.1 0.022 7.7E-07 55.9 2.9 24 410-433 23-46 (195)
375 3pfi_A Holliday junction ATP-d 94.1 0.15 5.1E-06 55.0 9.7 25 411-435 56-80 (338)
376 2grj_A Dephospho-COA kinase; T 94.0 0.026 8.8E-07 56.2 3.3 23 411-433 13-35 (192)
377 3auy_A DNA double-strand break 94.0 0.028 9.4E-07 62.1 3.8 31 400-431 16-46 (371)
378 1a7j_A Phosphoribulokinase; tr 94.0 0.015 5.2E-07 61.9 1.6 26 409-434 4-29 (290)
379 2pt5_A Shikimate kinase, SK; a 94.0 0.027 9.4E-07 54.1 3.3 23 412-434 2-24 (168)
380 3tw8_B RAS-related protein RAB 94.0 0.024 8.3E-07 54.6 3.0 22 412-433 11-32 (181)
381 3t1o_A Gliding protein MGLA; G 94.0 0.027 9.2E-07 55.2 3.3 25 412-436 16-40 (198)
382 3pqc_A Probable GTP-binding pr 94.0 0.024 8.2E-07 55.5 2.9 23 412-434 25-47 (195)
383 2pbr_A DTMP kinase, thymidylat 94.0 0.027 9.2E-07 55.4 3.3 23 412-434 2-24 (195)
384 4b4t_K 26S protease regulatory 94.0 0.17 5.7E-06 56.7 9.9 30 406-435 202-231 (428)
385 3b1v_A Ferrous iron uptake tra 93.9 0.028 9.4E-07 59.3 3.4 23 412-434 5-27 (272)
386 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.029 9.9E-07 58.6 3.4 27 408-434 2-28 (260)
387 4dsu_A GTPase KRAS, isoform 2B 93.9 0.029 9.8E-07 54.6 3.2 22 412-433 6-27 (189)
388 3t5g_A GTP-binding protein RHE 93.8 0.045 1.5E-06 52.9 4.5 21 412-432 8-28 (181)
389 1q57_A DNA primase/helicase; d 93.8 0.21 7.3E-06 57.3 10.9 35 400-434 232-266 (503)
390 3bc1_A RAS-related protein RAB 93.8 0.029 1E-06 54.7 3.2 22 412-433 13-34 (195)
391 2qmh_A HPR kinase/phosphorylas 93.8 0.039 1.3E-06 54.8 3.9 35 399-434 24-58 (205)
392 2hxs_A RAB-26, RAS-related pro 93.8 0.033 1.1E-06 53.7 3.4 22 412-433 8-29 (178)
393 2cxx_A Probable GTP-binding pr 93.8 0.028 9.5E-07 54.8 2.9 22 412-433 3-24 (190)
394 1r8s_A ADP-ribosylation factor 93.8 0.031 1.1E-06 53.1 3.2 21 412-432 2-22 (164)
395 1uj2_A Uridine-cytidine kinase 93.8 0.028 9.4E-07 58.4 3.0 24 411-434 23-46 (252)
396 2fg5_A RAB-22B, RAS-related pr 93.8 0.039 1.3E-06 54.3 4.0 22 412-433 25-46 (192)
397 2y8e_A RAB-protein 6, GH09086P 93.7 0.029 1E-06 54.0 3.0 22 412-433 16-37 (179)
398 1upt_A ARL1, ADP-ribosylation 93.7 0.031 1.1E-06 53.3 3.2 22 411-432 8-29 (171)
399 1sxj_B Activator 1 37 kDa subu 93.7 0.052 1.8E-06 58.0 5.2 22 413-434 45-66 (323)
400 4bas_A ADP-ribosylation factor 93.7 0.037 1.3E-06 54.4 3.7 22 411-432 18-39 (199)
401 3exa_A TRNA delta(2)-isopenten 93.7 0.035 1.2E-06 59.2 3.7 25 410-434 3-27 (322)
402 2g6b_A RAS-related protein RAB 93.7 0.032 1.1E-06 53.9 3.2 22 412-433 12-33 (180)
403 1wf3_A GTP-binding protein; GT 93.7 0.032 1.1E-06 59.7 3.3 22 412-433 9-30 (301)
404 3be4_A Adenylate kinase; malar 93.6 0.026 9E-07 57.1 2.5 26 409-434 4-29 (217)
405 4b4t_M 26S protease regulatory 93.6 0.14 4.9E-06 57.3 8.6 30 406-435 211-240 (434)
406 2gf0_A GTP-binding protein DI- 93.6 0.05 1.7E-06 53.5 4.5 21 412-432 10-30 (199)
407 2f6r_A COA synthase, bifunctio 93.6 0.033 1.1E-06 58.9 3.3 23 410-432 75-97 (281)
408 2efe_B Small GTP-binding prote 93.6 0.035 1.2E-06 53.6 3.2 22 412-433 14-35 (181)
409 1z0f_A RAB14, member RAS oncog 93.6 0.035 1.2E-06 53.4 3.2 22 412-433 17-38 (179)
410 2xtp_A GTPase IMAP family memb 93.5 0.034 1.2E-06 57.9 3.2 22 412-433 24-45 (260)
411 3con_A GTPase NRAS; structural 93.5 0.035 1.2E-06 54.3 3.2 22 412-433 23-44 (190)
412 1ypw_A Transitional endoplasmi 93.5 0.0048 1.7E-07 75.3 -3.9 45 402-448 503-547 (806)
413 2a9k_A RAS-related protein RAL 93.5 0.037 1.3E-06 53.6 3.2 22 412-433 20-41 (187)
414 3tmk_A Thymidylate kinase; pho 93.5 0.043 1.5E-06 55.6 3.7 29 408-436 3-31 (216)
415 1gwn_A RHO-related GTP-binding 93.4 0.054 1.9E-06 54.1 4.4 22 412-433 30-51 (205)
416 1zd9_A ADP-ribosylation factor 93.4 0.048 1.6E-06 53.4 3.9 22 412-433 24-45 (188)
417 2bme_A RAB4A, RAS-related prot 93.4 0.036 1.2E-06 53.8 3.0 22 412-433 12-33 (186)
418 3iev_A GTP-binding protein ERA 93.4 0.037 1.3E-06 59.3 3.3 22 412-433 12-33 (308)
419 2gf9_A RAS-related protein RAB 93.4 0.039 1.3E-06 54.0 3.2 22 412-433 24-45 (189)
420 3v9p_A DTMP kinase, thymidylat 93.3 0.037 1.3E-06 56.6 3.0 28 408-435 23-50 (227)
421 1vg8_A RAS-related protein RAB 93.3 0.04 1.4E-06 54.7 3.2 23 412-434 10-32 (207)
422 4b4t_J 26S protease regulatory 93.3 0.18 6.1E-06 55.8 8.6 29 407-435 179-207 (405)
423 3kkq_A RAS-related protein M-R 93.3 0.04 1.4E-06 53.4 3.2 22 412-433 20-41 (183)
424 4dhe_A Probable GTP-binding pr 93.3 0.025 8.5E-07 57.0 1.7 24 411-434 30-53 (223)
425 3reg_A RHO-like small GTPase; 93.3 0.063 2.1E-06 52.7 4.6 22 412-433 25-46 (194)
426 1sky_E F1-ATPase, F1-ATP synth 93.3 0.02 6.9E-07 64.5 1.1 40 399-439 141-180 (473)
427 2bov_A RAla, RAS-related prote 93.3 0.04 1.4E-06 54.5 3.2 22 412-433 16-37 (206)
428 3i8s_A Ferrous iron transport 93.2 0.04 1.4E-06 58.0 3.2 23 412-434 5-27 (274)
429 1z06_A RAS-related protein RAB 93.2 0.043 1.5E-06 53.7 3.2 22 412-433 22-43 (189)
430 1moz_A ARL1, ADP-ribosylation 93.2 0.027 9.3E-07 54.6 1.8 24 409-432 17-40 (183)
431 3d3q_A TRNA delta(2)-isopenten 93.2 0.038 1.3E-06 59.8 3.0 25 411-435 8-32 (340)
432 1nrj_B SR-beta, signal recogni 93.2 0.042 1.4E-06 55.1 3.2 23 412-434 14-36 (218)
433 1zbd_A Rabphilin-3A; G protein 93.1 0.046 1.6E-06 54.1 3.3 22 412-433 10-31 (203)
434 3tkl_A RAS-related protein RAB 93.1 0.056 1.9E-06 53.0 3.8 22 412-433 18-39 (196)
435 2fv8_A H6, RHO-related GTP-bin 93.1 0.025 8.7E-07 56.4 1.3 34 400-433 15-48 (207)
436 2h92_A Cytidylate kinase; ross 93.1 0.04 1.4E-06 55.6 2.8 25 410-434 3-27 (219)
437 2cjw_A GTP-binding protein GEM 93.1 0.045 1.6E-06 54.0 3.2 22 412-433 8-29 (192)
438 1mh1_A RAC1; GTP-binding, GTPa 93.1 0.046 1.6E-06 53.0 3.2 21 412-432 7-27 (186)
439 3oes_A GTPase rhebl1; small GT 93.1 0.043 1.5E-06 54.4 3.0 23 411-433 25-47 (201)
440 3cnl_A YLQF, putative uncharac 93.1 0.048 1.7E-06 57.0 3.4 30 411-440 100-129 (262)
441 2qu8_A Putative nucleolar GTP- 93.0 0.044 1.5E-06 55.7 3.1 23 411-433 30-52 (228)
442 1ak2_A Adenylate kinase isoenz 93.0 0.043 1.5E-06 56.2 3.0 26 409-434 15-40 (233)
443 3cmu_A Protein RECA, recombina 93.0 0.39 1.3E-05 63.1 12.4 30 407-436 380-409 (2050)
444 3a1s_A Iron(II) transport prot 93.0 0.048 1.6E-06 56.9 3.4 23 412-434 7-29 (258)
445 3bwd_D RAC-like GTP-binding pr 93.0 0.054 1.9E-06 52.3 3.6 23 411-433 9-31 (182)
446 4edh_A DTMP kinase, thymidylat 93.0 0.05 1.7E-06 55.0 3.4 29 408-436 4-32 (213)
447 1ojl_A Transcriptional regulat 93.0 0.2 6.9E-06 53.4 8.3 29 408-436 23-51 (304)
448 2il1_A RAB12; G-protein, GDP, 93.0 0.044 1.5E-06 53.9 2.9 22 412-433 28-49 (192)
449 2a5j_A RAS-related protein RAB 93.0 0.048 1.7E-06 53.5 3.2 22 412-433 23-44 (191)
450 3dz8_A RAS-related protein RAB 93.0 0.046 1.6E-06 53.7 3.0 23 412-434 25-47 (191)
451 3llu_A RAS-related GTP-binding 92.9 0.051 1.7E-06 53.7 3.3 25 412-436 22-46 (196)
452 3umf_A Adenylate kinase; rossm 92.9 0.037 1.3E-06 56.1 2.2 30 406-435 25-54 (217)
453 1jwy_B Dynamin A GTPase domain 92.9 0.046 1.6E-06 58.5 3.1 23 412-434 26-48 (315)
454 3def_A T7I23.11 protein; chlor 92.9 0.048 1.6E-06 56.9 3.2 23 412-434 38-60 (262)
455 3lv8_A DTMP kinase, thymidylat 92.9 0.055 1.9E-06 55.6 3.5 28 409-436 26-53 (236)
456 1zj6_A ADP-ribosylation factor 92.9 0.05 1.7E-06 53.1 3.1 23 410-432 16-38 (187)
457 2o52_A RAS-related protein RAB 92.9 0.05 1.7E-06 53.9 3.1 22 412-433 27-48 (200)
458 2xb4_A Adenylate kinase; ATP-b 92.9 0.053 1.8E-06 55.1 3.3 23 412-434 2-24 (223)
459 1e4v_A Adenylate kinase; trans 92.8 0.049 1.7E-06 54.8 3.1 23 412-434 2-24 (214)
460 1jbk_A CLPB protein; beta barr 92.8 0.059 2E-06 52.3 3.6 28 408-435 41-68 (195)
461 4tmk_A Protein (thymidylate ki 92.8 0.058 2E-06 54.5 3.6 27 409-435 2-28 (213)
462 3cph_A RAS-related protein SEC 92.8 0.051 1.8E-06 54.1 3.2 23 411-433 21-43 (213)
463 2p5s_A RAS and EF-hand domain 92.8 0.053 1.8E-06 53.6 3.2 24 410-433 28-51 (199)
464 1x3s_A RAS-related protein RAB 92.8 0.053 1.8E-06 53.0 3.2 22 412-433 17-38 (195)
465 2atv_A RERG, RAS-like estrogen 92.8 0.054 1.9E-06 53.4 3.2 23 411-433 29-51 (196)
466 2h17_A ADP-ribosylation factor 92.8 0.046 1.6E-06 53.1 2.7 22 412-433 23-44 (181)
467 3foz_A TRNA delta(2)-isopenten 92.8 0.053 1.8E-06 57.7 3.3 26 410-435 10-35 (316)
468 3ld9_A DTMP kinase, thymidylat 92.7 0.058 2E-06 54.9 3.4 28 408-435 19-46 (223)
469 4b4t_H 26S protease regulatory 92.7 0.22 7.4E-06 56.0 8.3 30 406-435 239-268 (467)
470 1h65_A Chloroplast outer envel 92.7 0.051 1.8E-06 57.0 3.1 23 412-434 41-63 (270)
471 2wsm_A Hydrogenase expression/ 92.7 0.051 1.8E-06 54.7 3.0 24 411-434 31-54 (221)
472 2xxa_A Signal recognition part 92.7 0.44 1.5E-05 53.5 10.9 29 409-437 99-127 (433)
473 2ocp_A DGK, deoxyguanosine kin 92.7 0.052 1.8E-06 55.8 3.0 27 409-435 1-27 (241)
474 2h57_A ADP-ribosylation factor 92.7 0.043 1.5E-06 53.8 2.3 23 412-434 23-45 (190)
475 3crm_A TRNA delta(2)-isopenten 92.6 0.053 1.8E-06 58.3 3.1 25 411-435 6-30 (323)
476 1p5z_B DCK, deoxycytidine kina 92.6 0.04 1.4E-06 57.5 2.1 29 407-435 21-49 (263)
477 2iwr_A Centaurin gamma 1; ANK 92.6 0.048 1.6E-06 52.6 2.5 22 412-433 9-30 (178)
478 2j1l_A RHO-related GTP-binding 92.6 0.058 2E-06 54.2 3.2 21 412-432 36-56 (214)
479 4b4t_I 26S protease regulatory 92.5 0.33 1.1E-05 54.0 9.3 30 406-435 212-241 (437)
480 3c5c_A RAS-like protein 12; GD 92.5 0.061 2.1E-06 52.7 3.2 21 412-432 23-43 (187)
481 2f7s_A C25KG, RAS-related prot 92.5 0.063 2.2E-06 53.8 3.4 22 412-433 27-48 (217)
482 2aka_B Dynamin-1; fusion prote 92.5 0.053 1.8E-06 57.5 2.9 23 412-434 28-50 (299)
483 2fh5_B SR-beta, signal recogni 92.5 0.077 2.6E-06 53.0 4.0 24 411-434 8-31 (214)
484 2q3h_A RAS homolog gene family 92.4 0.065 2.2E-06 52.9 3.3 23 411-433 21-43 (201)
485 3tqf_A HPR(Ser) kinase; transf 92.4 0.083 2.8E-06 51.2 3.8 33 399-432 6-38 (181)
486 3r7w_A Gtpase1, GTP-binding pr 92.4 0.065 2.2E-06 57.4 3.5 27 409-435 2-28 (307)
487 2fu5_C RAS-related protein RAB 92.4 0.043 1.5E-06 53.2 1.8 21 412-432 10-30 (183)
488 2gco_A H9, RHO-related GTP-bin 92.4 0.061 2.1E-06 53.3 3.0 22 412-433 27-48 (201)
489 4gzl_A RAS-related C3 botulinu 92.3 0.096 3.3E-06 52.1 4.4 23 410-432 30-52 (204)
490 3q3j_B RHO-related GTP-binding 92.3 0.09 3.1E-06 52.8 4.1 22 412-433 29-50 (214)
491 2b6h_A ADP-ribosylation factor 92.2 0.06 2.1E-06 53.0 2.7 25 408-432 27-51 (192)
492 2g3y_A GTP-binding protein GEM 92.1 0.084 2.9E-06 53.2 3.7 23 412-434 39-61 (211)
493 2atx_A Small GTP binding prote 92.1 0.071 2.4E-06 52.3 3.0 22 412-433 20-41 (194)
494 3cmw_A Protein RECA, recombina 92.0 0.43 1.5E-05 61.9 10.8 35 399-434 370-407 (1706)
495 1qvr_A CLPB protein; coiled co 92.0 0.21 7.3E-06 61.3 7.8 35 411-445 589-624 (854)
496 3l0o_A Transcription terminati 91.9 0.042 1.4E-06 60.1 1.2 33 402-434 167-199 (427)
497 1ltq_A Polynucleotide kinase; 91.9 0.077 2.6E-06 56.4 3.3 23 411-433 3-25 (301)
498 1puj_A YLQF, conserved hypothe 91.9 0.091 3.1E-06 55.5 3.8 28 410-437 120-147 (282)
499 2p65_A Hypothetical protein PF 91.9 0.073 2.5E-06 51.5 2.9 29 408-436 41-69 (187)
500 3geh_A MNME, tRNA modification 91.8 0.074 2.5E-06 60.4 3.1 26 408-433 222-247 (462)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-129 Score=1244.81 Aligned_cols=823 Identities=34% Similarity=0.541 Sum_probs=708.4
Q ss_pred hhhcchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc----------------CChhhhhhHH
Q 002817 37 QKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAY----------------LFPKTASHKV 100 (876)
Q Consensus 37 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~----------------~~~~~~~~~~ 100 (876)
..++.+++++|+|+.++++++++++++++++.|+..|++++++|++++.+.... .....+.+.+
T Consensus 56 ~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1321)
T 4f4c_A 56 VVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDV 135 (1321)
T ss_dssp CSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHH
T ss_pred ccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHH
Confidence 345678999999999999999999999999999999999999999999764210 0111223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHH
Q 002817 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKV 180 (876)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~ 180 (876)
..+++.+++++++.+++.+++.+++.+.++|+..++|.++|+|++++|++|||++ ++|++++|+++|++.+++++++.+
T Consensus 136 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 136 MNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888999999999999999999999999999999999999999994 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH
Q 002817 181 GNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260 (876)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e 260 (876)
+.++..+++++++++++++++|++++++++++|+++++..++.++.++..++.++..++.++.++|+++|||+||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhH
Q 002817 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAP 340 (876)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~ 340 (876)
+.+.++|.+..++..+...+.....++..+...++..+..++++|+|++++..|.+|+|.+++++.++..+..|+..+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCC
Q 002817 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420 (876)
Q Consensus 341 ~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sG 420 (876)
.+..++++.++++|++++++.+|+.++....+..+.+.+++|+|+||+|+||++++.++|+|+||+|++||++|||||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCC
Confidence 99999999999999999999887765443333444456789999999999998888899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhh
Q 002817 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500 (876)
Q Consensus 421 sGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~ 500 (876)
||||||+++|+|+|+|++|+|.+||+|+++++.++||++||||+||||||++||||||+||+|+++++++++||+.++++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCch
Q 002817 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580 (876)
Q Consensus 501 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls 580 (876)
+||+.||+||||+|||+|.+||||||||||||||+|+|||||||||||||||+++|+.|+++|+++.+|||+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHHhhhcCC---CC-CCCC-CCCCccc--cccccccC----
Q 002817 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSN---SS-QCPN-MGRPLSI--KFSRELSG---- 649 (876)
Q Consensus 581 ~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~---~~-~~~~-~~~~~~~--~~~~~~~~---- 649 (876)
++++||+|+||++|+|+|+|||+||+++ +|.|+++++.|...+..+. .. ..++ ...+... ....+...
T Consensus 615 ~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDI 693 (1321)
T ss_dssp TTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccch
Confidence 9999999999999999999999999998 9999999998864332111 00 0000 0000000 00000000
Q ss_pred ---CccccCCCCccchhhhcccCCC---------CCCCccccccchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002817 650 ---TRTSFGASFRSEKESVLSHGAA---------DATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFAL 717 (876)
Q Consensus 650 ---~~~~~~~~~~~~~~~~~~~~~~---------~~~e~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~ 717 (876)
.+..........+...+.+... ...++......+.++++.+.+++|.++..+++++++.++..|.+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 773 (1321)
T 4f4c_A 694 MNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSV 773 (1321)
T ss_dssp ----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred hhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000000000000 0011122234466778888899998888888888888899999888
Q ss_pred HHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHH
Q 002817 718 GVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSS 797 (876)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~G 797 (876)
.++..+..++.+..........|.++|++++++.+++.+++.+++.+++.+++++||+++|++++++|++|||.+.||+|
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G 853 (1321)
T 4f4c_A 774 FFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASG 853 (1321)
T ss_dssp HHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHH
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChH
Confidence 88887776655433333445678899999999999999999999999999999999999999999999999997679999
Q ss_pred HHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002817 798 ILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIKTL 861 (876)
Q Consensus 798 rIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~~ 861 (876)
+|+|||++|++.++..++..+..++..+.+++++++++++++|++++++++++|++++..++..
T Consensus 854 ~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~ 917 (1321)
T 4f4c_A 854 KISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRG 917 (1321)
T ss_dssp HHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876543
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-113 Score=1095.03 Aligned_cols=822 Identities=36% Similarity=0.644 Sum_probs=688.3
Q ss_pred hcchHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC------C---------hhhhhhHHHHH
Q 002817 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYL------F---------PKTASHKVAKY 103 (876)
Q Consensus 39 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~------~---------~~~~~~~~~~~ 103 (876)
...++.++++|..+.++.+++++++++++.++..|+++++++.++|.+..... . .......+..+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp --CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 34568889999887778888889999999999999999999999997642110 0 00011233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHH
Q 002817 104 SLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNF 183 (876)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~ 183 (876)
++.+++++++.+++.+++.+++.+.++++..++|.++|++++++|++|||+ .++|++++|+++|++.+++.+...+..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888899999999999999999999999999999999999999 4999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHH
Q 002817 184 MHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKA 263 (876)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~ 263 (876)
+..++++++.++++++++|.+++++++++|+++++..++.+..++..++.++..++.+..+.|+++|+++||+|++|+.+
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002817 264 VKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343 (876)
Q Consensus 264 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 343 (876)
.++|.+..++..+...|.....++..++..++..+..++++|+|++++..|.+++|.+++++.++.....|+..+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888889999999999999999999998887777777889999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccH
Q 002817 344 AFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGK 423 (876)
Q Consensus 344 ~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGK 423 (876)
.++++.++++|++++++.+++.++....+..+++.++.|+|+||+|+||++++.++|+|+||+|++||++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999876543322222233345678999999999987656689999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhH
Q 002817 424 STVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503 (876)
Q Consensus 424 STll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i 503 (876)
|||+++|+|+|+|++|+|.+||+|+++++++++|++||||+|||+||++||+|||.||.++.+++++++||+.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh
Q 002817 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR 583 (876)
Q Consensus 504 ~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~ 583 (876)
+++|+||||.+||+|.+||||||||||||||+++||+||||||||||||+++|+.+++++++..+|+|+|+||||+++++
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHHhhhcCCCCCCCCCCCCc---cccccccc-c-CCccccCCCC
Q 002817 584 NADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPL---SIKFSREL-S-GTRTSFGASF 658 (876)
Q Consensus 584 ~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~ 658 (876)
+||+|+||++|+|+|+|+|+||+++ +|.|++++..|.................+. ........ . ..........
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSI 668 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC------------------------------------------
T ss_pred cCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998 899999987764322211100000000000 00000000 0 0000000000
Q ss_pred ccchhhhcccCCCCCCCccccccchHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhh
Q 002817 659 RSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW--DTTQRE 736 (876)
Q Consensus 659 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~ 736 (876)
..... .........+.+......+.++++.+.+++|+++..+++++++.++..|.+.+.++.++..+.... ......
T Consensus 669 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 747 (1284)
T 3g5u_A 669 CGPHD-QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQN 747 (1284)
T ss_dssp ----------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred ccccc-cccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHH
Confidence 00000 000000000111122334556777778888888888888888888888888888887776554321 122334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHH
Q 002817 737 VKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD 816 (876)
Q Consensus 737 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~ 816 (876)
...|..+|++++++.+++.+++.+.+.+.+++++.++|.++|++++++|++|||++.||+|+|+|||++|++.++..++.
T Consensus 748 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~ 827 (1284)
T 3g5u_A 748 SNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS 827 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002817 817 RSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIKTLLS 863 (876)
Q Consensus 817 ~l~~~~~~~~~~~~~ivv~~~~~~~l~lv~l~~~pl~~~~~~~~~~~ 863 (876)
.+..+++.+..++++++++++++|++++++++++|++++..++..+.
T Consensus 828 ~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~ 874 (1284)
T 3g5u_A 828 RLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM 874 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887765543
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.6e-99 Score=968.15 Aligned_cols=577 Identities=36% Similarity=0.553 Sum_probs=496.7
Q ss_pred chHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (876)
Q Consensus 41 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (876)
..+++++.+..++ +..++++++++.+.++..|.++++++..++.+.... .........+++.+++++++..++.++
T Consensus 738 ~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 738 TNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNP---ADFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCS---STTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766554 455667778888888999999988888888754321 112223344666777778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcC-CChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTE-ASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (876)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~-~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (876)
..+++.+.+.++..++|.++|++++++|++|||.. +++|+++||+++|++.+++.+...+..++..++.+++.++++++
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 99999999999999999999999999999999862 37999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 002817 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (876)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (876)
++|.+++++++++|++++...+..++......+.++..++....+.|+++|+++||+|++|+.+.++|.+..++..+...
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887777766666666667778888889999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002817 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGG--ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFE 357 (876)
Q Consensus 280 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~ 357 (876)
+...+.++..++...+..+..++++++|.+++..+..+.+ .++.++.+......++..+...+..+.++..+.+|+++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 1053 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFG 1053 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777777888889999998887776554 44444444444345677778888999999999999999
Q ss_pred HhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 358 MIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
+++.+++.++... ....++..|+|+|+||+|+||++++.+||+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 1054 ~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1054 MLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 9998776543222 223345568999999999999887788999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC--CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhc
Q 002817 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPERFETQVG 515 (876)
Q Consensus 438 ~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~--~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vG 515 (876)
+|+|++||+||+++++++||++|+||||||+||+|||||||+||. ++++++|+++||+.++++|||++||+||||+||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999995 578999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 516 e~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
|+|.+||||||||||||||++|||+||||||||||||++||+.|+++|++..+|||+|+|||||+|+++||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhcCCCchHHHHHHHHHHh
Q 002817 596 IVKTGSHEELISNPNSAYAALVQLQEAA 623 (876)
Q Consensus 596 Ive~Gt~~eL~~~~~g~y~~l~~~~~~~ 623 (876)
|+|+|||+||+++ +|.|++|++.|..+
T Consensus 1293 IvE~Gth~eLl~~-~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSE-KGAYYKLTQKQMTE 1319 (1321)
T ss_dssp EEEEECHHHHHHC-C-------------
T ss_pred EEEECCHHHHHhC-CcHHHHHHHHHHhc
Confidence 9999999999998 89999999988643
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-93 Score=848.90 Aligned_cols=568 Identities=24% Similarity=0.349 Sum_probs=506.1
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 44 FKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVS 123 (876)
Q Consensus 44 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (876)
++++++.++++ ..+.++.++.++.+++.+..|+++++++|...... .........+.++++.++..++.++..+
T Consensus 12 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 12 KTLARYLKPYW-IFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-----DFSLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp CCGGGGTGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555543 34455666666777777777889999999764221 1122333444555566667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 124 CWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQ 203 (876)
Q Consensus 124 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (876)
+..+.+.++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+++++...+..++..++.++++++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNR-FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999 499999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 204 ISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGL 283 (876)
Q Consensus 204 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~ 283 (876)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccc
Q 002817 284 AKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDT 363 (876)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~ 363 (876)
..+...++..++..+..++++++|++++..|.+++|.+++++.+......|+..++..+..+.++.++++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88877777777777788889999999999999999999998888888888999999999999999999999999998776
Q ss_pred ccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 002817 364 MSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (876)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i 443 (876)
+.++.. .....++.++.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 543211 111222345789999999999743 457999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 444 DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 444 dG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
||+|+++++.+++|++|+||||+|++|++||+|||.+|.++.+++++.++++.++++++++.+|+|+||.+||+|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChh
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHE 603 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~ 603 (876)
|||||++||||+++||+|||||||||+||+++|+.+++.|+++.+++|+|+||||+++++.||+|++|++|+|+|+|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHH
Q 002817 604 ELISNPNSAYAALVQLQE 621 (876)
Q Consensus 604 eL~~~~~g~y~~l~~~~~ 621 (876)
||+++ ++.|+++++.|.
T Consensus 563 el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 563 ELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHH-CHHHHHHHHHHC
T ss_pred HHHhC-CcHHHHHHHHHh
Confidence 99987 899999998774
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-93 Score=850.88 Aligned_cols=570 Identities=30% Similarity=0.441 Sum_probs=512.9
Q ss_pred chHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (876)
Q Consensus 41 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (876)
..+++++++.++++ ..+.+++++.++.+++.+..|++++.++|.+.... + ......+.+.++++.++..++.++
T Consensus 23 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 96 (598)
T 3qf4_B 23 ATLRRLLGYLRPHT-FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR-R----FDLLPRYMLILGTIYALTSLLFWL 96 (598)
T ss_dssp HHHHHHGGGTGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-C----GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888776654 34455666677777777788889999999864321 1 122333445556666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (876)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (876)
..++..+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.+++++++
T Consensus 97 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 175 (598)
T 3qf4_B 97 QGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV 175 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 002817 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (876)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 280 (876)
+|.+++++++++|+.+++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 176 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 255 (598)
T 3qf4_B 176 NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255 (598)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 002817 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (876)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~ 360 (876)
.....+...++..++..+..++++++|++++..|.+++|.+++++.+......|+..++..+..+.++.++++|+.++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 335 (598)
T 3qf4_B 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335 (598)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888887778878888889999999999999999999888777777778999999999999999999999999998
Q ss_pred cccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 002817 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (876)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~ 440 (876)
.+++.+.. .....++..+.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 336 ~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 411 (598)
T 3qf4_B 336 LEEEKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411 (598)
T ss_dssp SCCCCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred CCCCCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence 77654321 11222334578999999999974 356999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 441 I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
|.+||+|+++++.+++|++||||||+|++|++||+|||.+|+++.+++++.++++.++++++++.+|+|+||.+||+|.+
T Consensus 412 i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 491 (598)
T 3qf4_B 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491 (598)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT
T ss_pred EEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEec
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 600 (876)
|||||||||+||||+++||+||||||||||||+++++.+++.|+++.+|+|+|+||||+++++.||+|++|++|+|+|+|
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHHH
Q 002817 601 SHEELISNPNSAYAALVQLQEA 622 (876)
Q Consensus 601 t~~eL~~~~~g~y~~l~~~~~~ 622 (876)
+|+||+++ +|.|+++++.|..
T Consensus 572 ~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 572 KHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp CHHHHHHT-TCHHHHHHHHHHG
T ss_pred CHHHHHhC-CCHHHHHHHHHhh
Confidence 99999998 8999999988764
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.4e-93 Score=846.04 Aligned_cols=571 Identities=30% Similarity=0.403 Sum_probs=505.8
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHH----HHHHHHHHHHHHHHHHHH
Q 002817 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV----AKYSLDFVYLSVAILFSS 118 (876)
Q Consensus 43 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 118 (876)
+++++++.+++++ .++++++++++.++..++.|++++.++|.+....... ..... ...+..++++.++..++.
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT--TDEKVHHLTIAIGIALFIFVIVRPPIE 78 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC--HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666655543 3445566666666677777888999999875321100 01111 223334444555666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002817 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (876)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (876)
++..++..+.+.++..++|.++|+|++++|+++|++ .++|++++|+++|++.+++++...+..++..++.+++.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 157 (578)
T 4a82_A 79 FIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMF 157 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999998 4999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 002817 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (876)
Q Consensus 199 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (876)
+++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+..
T Consensus 158 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 237 (578)
T 4a82_A 158 FLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRA 237 (578)
T ss_dssp HHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002817 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (876)
Q Consensus 279 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~ 358 (876)
.+...+.+...++..++..+..++++++|++++..|.+|+|.+++++.++.....|+..++..+..+.++.++++|+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~ 317 (578)
T 4a82_A 238 LKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQL 317 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888899999999999999999999988888888889999999999999999999999999
Q ss_pred hccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 002817 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438 (876)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~ 438 (876)
++.+++.++. ....+.+...+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 318 l~~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 318 IDEDYDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp HTCCCSSCCC-TTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred HcCCCcccCC-CCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 9887654321 1111223345789999999999753 4579999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC
Q 002817 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (876)
Q Consensus 439 G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G 518 (876)
|+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.++.+++++.++|+.++++++++.+|+|+||.+||+|
T Consensus 396 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g 475 (578)
T 4a82_A 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475 (578)
T ss_dssp EEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred cEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEE
Q 002817 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 598 (876)
.+||||||||++||||+++||+||||||||||||+++++.++++++++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHH
Q 002817 599 TGSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 599 ~Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
+|+|+||+++ +|.|+++++.|
T Consensus 556 ~g~~~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 556 TGTHRELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp EECHHHHHHT-TSHHHHHHTTT
T ss_pred ECCHHHHHhC-CcHHHHHHHhh
Confidence 9999999997 89999998654
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.1e-90 Score=820.68 Aligned_cols=568 Identities=28% Similarity=0.435 Sum_probs=503.7
Q ss_pred hHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (876)
Q Consensus 42 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (876)
.+++++++.++.+ ..+.+++++.++.++..++.+++++.++|.+.... . ..........++++.++..++.++.
T Consensus 12 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (582)
T 3b5x_A 12 TFKRLWTYIRLYK-AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA----E-SNFLRILPFMILGLMFVRGLSGFAS 85 (582)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----c-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666654443 33445556666667777777888999999764211 1 1112222233445556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (876)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (876)
.++..+.+.++..++|.+++++++++|+++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 164 (582)
T 3b5x_A 86 SYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNS 164 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999998 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 002817 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (876)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 281 (876)
|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T 3b5x_A 165 WQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKL 244 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
....+...++..++..+..++++++|++++..|.+|+|.+++++.+......|+..+...+..++++.++++|+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~ 324 (582)
T 3b5x_A 245 VSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDL 324 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888889999999999999999999998888888899999999999999999999999999987
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
+++.++ ...+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 325 ~~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 325 ETERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred CCcCCC---CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 654321 111112234679999999999743 2469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC-CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~-~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
.+||+|+++++.+++|++||||||+|++|++||+|||.+|. ++.+++++.++++.++++++++++|+|+||.+||+|.+
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred EECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 99999999999999999999999999999999999999998 77889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEec
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 600 (876)
||||||||++||||+++||+|||||||||+||+++++.+.+.|+++.+|+|+|+||||+++++.||+|++|++|+|+++|
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHH
Q 002817 601 SHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 601 t~~eL~~~~~g~y~~l~~~~~ 621 (876)
+|+||+++ ++.|+++++.|.
T Consensus 561 ~~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 561 RHADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred CHHHHHhC-CcHHHHHHHHhh
Confidence 99999987 899999998773
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.5e-90 Score=823.55 Aligned_cols=574 Identities=37% Similarity=0.540 Sum_probs=487.9
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (876)
Q Consensus 43 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (876)
+++++++.+++++ .+.++++++++.++..++.|++++.++|.+...... ............++++.++..++.++..
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (595)
T 2yl4_A 7 ARKLLGLAYPERR-RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTV--DYSDNLTRLCLGLSAVFLCGAAANAIRV 83 (595)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTS--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544433 334455555666666667778889999976432100 0001122233334444555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (876)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (876)
++..+.+.++..++|.+++++++++|+++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 84 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 162 (595)
T 2yl4_A 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSP 162 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888999999999999999999999999998 49999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (876)
Q Consensus 203 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 282 (876)
.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 163 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 242 (595)
T 2yl4_A 163 NLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEA 242 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 002817 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (876)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~ 362 (876)
...+...++..++..+..++++++|++++..|.+|+|.+++++.+......|+..+...+..++++.++++|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 322 (595)
T 2yl4_A 243 FARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 322 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888877777777777788899999999999999999998888888888899999999999999999999999999876
Q ss_pred cccccCcccCCCCCCCccc-EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 363 TMSKASSKTGRKLDKLSGH-IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~-I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
++.++.. .....++..+. |+++||+|+|+++++.++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 323 ~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 401 (595)
T 2yl4_A 323 PKLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401 (595)
T ss_dssp CSSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE
T ss_pred CccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 5432211 11111223467 999999999975434579999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCC---CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~---~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G 518 (876)
.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.+. .+++++.++++.++++++++++|+|+||.+||+|
T Consensus 402 ~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~ 481 (595)
T 2yl4_A 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 481 (595)
T ss_dssp EETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS
T ss_pred EECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCC
Confidence 9999999999999999999999999999999999999999865 7899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEE
Q 002817 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive 598 (876)
.+||||||||++||||+++||+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITE 561 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHH
Q 002817 599 TGSHEELISNPNSAYAALVQLQE 621 (876)
Q Consensus 599 ~Gt~~eL~~~~~g~y~~l~~~~~ 621 (876)
+|+|+||++++++.|+++++.|.
T Consensus 562 ~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 562 YGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp EECSCC------C----------
T ss_pred ECCHHHHHhCCChHHHHHHHHhh
Confidence 99999999854789999998764
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.2e-90 Score=819.52 Aligned_cols=567 Identities=30% Similarity=0.461 Sum_probs=501.7
Q ss_pred hHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (876)
Q Consensus 42 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (876)
.+++++++.++.++ .+.+++++.++.++..+..+++++.++|.+.... . ........+.++++.++..++.++.
T Consensus 12 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (582)
T 3b60_A 12 TFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT----D-RSVLLWMPLVVIGLMILRGITSYIS 85 (582)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST----T-HHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----c-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666554433 3345556666666777777788899998653211 1 1112222233445556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (876)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (876)
.+...+.+.++..++|.+++++++++|+++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 164 (582)
T 3b60_A 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 002817 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (876)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 281 (876)
|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T 3b60_A 165 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 244 (582)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 002817 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (876)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (876)
....+...++..++..+..++++++|++++..|.+|+|.+++++.+......|+..+...+..+.++.++++|+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~ 324 (582)
T 3b60_A 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 324 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888777888889999999999999999999998888888899999999999999999999999999987
Q ss_pred ccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 002817 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (876)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I 441 (876)
+++.++ ...+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 325 ~~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 400 (582)
T 3b60_A 325 EQEKDE---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400 (582)
T ss_dssp CCSCCC---CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred CCCccC---CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence 654321 111112234679999999999742 2469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC-CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC
Q 002817 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (876)
Q Consensus 442 ~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~-~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~ 520 (876)
.+||+|+++++.+++|++|+||||+|++|++||+|||.+|. ++.+++++.++++.++++++++++|+|+||.+||+|.+
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp EETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCS
T ss_pred EECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCC
Confidence 99999999999999999999999999999999999999998 77889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEec
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~G 600 (876)
||||||||++||||+++||+|||||||||+||+++++.+++.|+++.+|+|+|+||||+++++.||+|++|++|+|+++|
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG 560 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHH
Q 002817 601 SHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 601 t~~eL~~~~~g~y~~l~~~~ 620 (876)
+|+||+++ ++.|+++++.|
T Consensus 561 ~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 561 THSELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp CHHHHHHH-TSSHHHHHHHT
T ss_pred CHHHHHHc-CCHHHHHHHHh
Confidence 99999987 78999999865
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.9e-86 Score=847.45 Aligned_cols=580 Identities=35% Similarity=0.611 Sum_probs=511.9
Q ss_pred chHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (876)
Q Consensus 41 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (876)
..+++++++..+. +..+.++++++++.+...|.++++++.+++.+.... ...........+.+.+++++++..++.++
T Consensus 691 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 768 (1284)
T 3g5u_A 691 ASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFL 768 (1284)
T ss_dssp CCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566554433 334556777778888889999999999998764321 11111223334556667777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002817 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (876)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~-~~~~G~l~s~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (876)
+.+++.+.++++..++|.++|++++++|++||+. ++++|++++|+++|++.+++.+...+..++..+..+++.++++++
T Consensus 769 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~ 848 (1284)
T 3g5u_A 769 QGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI 848 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999995 248999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 002817 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (876)
Q Consensus 200 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (876)
++|.+++++++++|+++++..+..+..+....+.++...+....+.|+++|+++||+|++|+.+.++|.+..+...+...
T Consensus 849 ~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~ 928 (1284)
T 3g5u_A 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928 (1284)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888888899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 002817 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (876)
Q Consensus 280 k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l 359 (876)
+...+.+...++...+..+..++++|+|++++..|.++.+.++.++.+......++..+......+.++..+.+|+.+++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 1008 (1284)
T 3g5u_A 929 KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII 1008 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999888777777777777777777778889999999999999
Q ss_pred ccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 002817 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (876)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G 439 (876)
+.+++.+.....+..++..++.|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|
T Consensus 1009 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp HSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred cCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 98765433222222233446789999999999865556799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCC
Q 002817 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGER 517 (876)
Q Consensus 440 ~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~ 517 (876)
+|.+||+|+++++.+++|++|+||||||.+|++||+|||.+|.+ ..+++++.++++.++++++++++|+||||.|||+
T Consensus 1089 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp EEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred EEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 99999999999999999999999999999999999999999975 4789999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEE
Q 002817 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIV 597 (876)
Q Consensus 518 G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Iv 597 (876)
|.+|||||||||+||||++++|+|||||||||+||+++++.|++.|++..+|+|+|+||||+++++.||+|+||++|+|+
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EecChhHHhcCCCchHHHHHHHHHHh
Q 002817 598 KTGSHEELISNPNSAYAALVQLQEAA 623 (876)
Q Consensus 598 e~Gt~~eL~~~~~g~y~~l~~~~~~~ 623 (876)
|.|+|+||+++ +|.|++|++.|...
T Consensus 1249 ~~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1249 EHGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EEECHHHHHHS-CSHHHHHHHHHC--
T ss_pred EECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 99999999998 89999999988543
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.5e-69 Score=582.35 Aligned_cols=278 Identities=42% Similarity=0.632 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCC
Q 002817 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420 (876)
Q Consensus 341 ~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sG 420 (876)
....++++.++++|++++++.+++..+.. .........+.|+|+||+|+|++ ..++|+|+||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 45667788899999999998766543211 11122233568999999999974 3469999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhh
Q 002817 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500 (876)
Q Consensus 421 sGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~ 500 (876)
||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|++|++||+|||.||.+..+++++.++++.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCch
Q 002817 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580 (876)
Q Consensus 501 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls 580 (876)
+++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHHHH
Q 002817 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622 (876)
Q Consensus 581 ~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~~~ 622 (876)
++..||+|+||++|+|++.|+|+||++. ++.|+++++.|..
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 9999999999999999999999999997 8999999988763
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.2e-57 Score=475.00 Aligned_cols=240 Identities=47% Similarity=0.770 Sum_probs=225.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
.+|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999421 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|+||+|+|.+|+.||+|||.++.+..+.+++.++++..++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987666788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHH
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~ 619 (876)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++|+++.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999998877999999999999998899999999999999999999987656889888865
Q ss_pred H
Q 002817 620 Q 620 (876)
Q Consensus 620 ~ 620 (876)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.2e-56 Score=473.60 Aligned_cols=240 Identities=43% Similarity=0.736 Sum_probs=224.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
+.|+++||+|+|++....++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.++|.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999997 8999999999999888899999
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|+||+|+|.+|+.|++|||.++....+.+++.++++..++.+++..+|+|++|.+++++.+||||||||++||||++++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999987556678889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHH
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~ 619 (876)
+|||||||||+||+++++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999988778999999999999988999999999999999999999886 6889988876
Q ss_pred HH
Q 002817 620 QE 621 (876)
Q Consensus 620 ~~ 621 (876)
+.
T Consensus 254 ~~ 255 (260)
T 2ghi_A 254 QS 255 (260)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.7e-55 Score=469.86 Aligned_cols=241 Identities=40% Similarity=0.689 Sum_probs=222.1
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
.+.|+++||+|+|++..+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 34699999999997422356999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCCCCH-HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDDATM-EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~-~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+|+||+|+|.+|+.||+|||.|+.+.... +++.++++..++.++++.+|+|+++.+++++.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998754443 67788888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
+|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 8999999999999988999999999999999999999886 688988
Q ss_pred HHHHH
Q 002817 616 LVQLQ 620 (876)
Q Consensus 616 l~~~~ 620 (876)
++..+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87654
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.8e-56 Score=467.13 Aligned_cols=234 Identities=47% Similarity=0.783 Sum_probs=220.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++|+|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeccCCCccccHHHHHHcC-CCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 462 LVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g-~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
||+|+|.+|+.|++|||.++ .+..+++++.++++..++.+++.++|+|++|.+++++.+||||||||++||||++++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 45567888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHH
Q 002817 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~ 618 (876)
+||||||||+||+++++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++++. .+.|.+++.
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 99999999999999999999999887778999999999999989999999999999999999999876 667777765
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-53 Score=472.06 Aligned_cols=233 Identities=27% Similarity=0.448 Sum_probs=218.8
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
.+.|+++||+|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|.|+++ ++|+|.+||+|+.+++.+.+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4679999999999632 3569999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+||||+|++.+|+.||+|||.+.. ....+++.++++..++.+++.++|.+++|.++++|.+||||||||+||||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 3567899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHH
Q 002817 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~ 614 (876)
|+|||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|+||++|+|++.|+++|+++.+...|.
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 9999999999999999999999999988789999999999999999999999999999999999999987655554
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9.2e-52 Score=432.25 Aligned_cols=222 Identities=25% Similarity=0.446 Sum_probs=198.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
+.|+++||+|+|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 34699999999999999999999999999999999999999999999999 4
Q ss_pred eEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC
Q 002817 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (876)
Q Consensus 460 i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p 539 (876)
|+||+|+|++|++|++|||.++.+ ....++.++++..++.+++..+|.+++|.+++++.+||||||||++||||++++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999853 2344556667777888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHH
Q 002817 540 SILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~-l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~ 617 (876)
++||||||||+||+++++.+.+. +++..+++|+|+|||+++.++.||+|++|++|++++.|+++++.+. .+.|.+++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 99999999999999999999886 4555568999999999999988999999999999999999999876 45565543
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.9e-52 Score=436.37 Aligned_cols=224 Identities=30% Similarity=0.529 Sum_probs=201.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++||+|+|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 34699999999999999999999999999999999999999999999999 49
Q ss_pred EEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC
Q 002817 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (876)
Q Consensus 461 ~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~ 540 (876)
+||+|+|++|+.|++|||.++.. ...++..++.+..++.+.+..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999863 22334556666667777788899999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH---HhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHH
Q 002817 541 ILLLDEATSALDAESENSVQEALD---RVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (876)
Q Consensus 541 IllLDE~tSaLD~~te~~i~~~l~---~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~ 617 (876)
|||||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999998884 44568999999999999988999999999999999999999886 78888888
Q ss_pred HHH
Q 002817 618 QLQ 620 (876)
Q Consensus 618 ~~~ 620 (876)
..|
T Consensus 227 ~~~ 229 (237)
T 2cbz_A 227 RTY 229 (237)
T ss_dssp HHT
T ss_pred HHH
Confidence 765
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.6e-49 Score=436.85 Aligned_cols=225 Identities=30% Similarity=0.514 Sum_probs=193.3
Q ss_pred ccEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---
Q 002817 380 GHIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW--- 455 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~--- 455 (876)
.-|+++|++++|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|+|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999996432 246899999999999999999999999999999999999999999999999999998765
Q ss_pred HhcceEEEeccCCCccc-cHHHHHHcCC--CCCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 456 LRQQIGLVNQEPALFAT-TIRENILYGK--DDATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 456 lr~~i~~V~Q~~~Lf~~-TIreNI~~g~--~~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
+|++||||+|++.+|.. ||+|||.|+. ...+. +++.++++..++.++ ......+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHH
Confidence 47899999999999865 9999999863 12222 345555555554433 234457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .|+|+|+|||+++.+.. ||+|+||++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999999876 999999999999999999999
Q ss_pred hcCCCchHHH
Q 002817 606 ISNPNSAYAA 615 (876)
Q Consensus 606 ~~~~~g~y~~ 615 (876)
+..+...|.+
T Consensus 252 ~~~p~~~~~~ 261 (366)
T 3tui_C 252 FSHPKTPLAQ 261 (366)
T ss_dssp HSSCCSHHHH
T ss_pred HhCCCcHHHH
Confidence 9875555544
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.2e-49 Score=413.29 Aligned_cols=219 Identities=28% Similarity=0.470 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH-hcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l-r~~ 459 (876)
-|+++|++|+|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999998887665 556
Q ss_pred eEEEeccCCCccc-cHHHHHHcCC-CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 460 IGLVNQEPALFAT-TIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~-~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|+||+|++.+|.+ |++||+.++. +..+.++..+.+ .+.++.++ |++...+.+..+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999974 222222322222 22344554 56666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 5899999999998764 5999999999999999999999753
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.4e-49 Score=414.19 Aligned_cols=215 Identities=31% Similarity=0.454 Sum_probs=180.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH----
Q 002817 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL---- 456 (876)
Q Consensus 382 I~~~~vsf~y~~~~-~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l---- 456 (876)
|+++||+|+|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2468999999999999999999999999999999999999999999999999999998764
Q ss_pred hcceEEEeccCCCccc-cHHHHHHcCC-----CCCCHH----HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 457 RQQIGLVNQEPALFAT-TIRENILYGK-----DDATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~-TIreNI~~g~-----~~~~~~----~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
|++||||+|+|.+|.. |++||+.++. .....+ ++.++++..++.+ - .......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-------R---FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG-------G---GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh-------h---hhhCChhhCCHHHH
Confidence 4579999999999986 9999998752 122222 2333333333211 1 12345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 604 (876)
||++|||||+++|++||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888899999999999999998777
Q ss_pred Hh
Q 002817 605 LI 606 (876)
Q Consensus 605 L~ 606 (876)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.5e-49 Score=421.25 Aligned_cols=215 Identities=26% Similarity=0.480 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC--CCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~--~~~~~~lr~ 458 (876)
-|+++|++|+|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999742 35999999999999999999999999999999999999999999999999994 334567899
Q ss_pred ceEEEeccC--CCccccHHHHHHcCC--CCCCHHH----HHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 459 QIGLVNQEP--ALFATTIRENILYGK--DDATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 459 ~i~~V~Q~~--~Lf~~TIreNI~~g~--~~~~~~~----v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
+||||+|+| .+|+.|++|||.|+. ...+.++ +.++++..++.+ .......+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHHH
Confidence 999999998 578899999999874 1223333 444444444332 233455789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++|+++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999865 99999999999999999999986
Q ss_pred C
Q 002817 608 N 608 (876)
Q Consensus 608 ~ 608 (876)
.
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 4
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.9e-48 Score=411.65 Aligned_cols=214 Identities=31% Similarity=0.463 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC--CCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~--~~~~~~lr~ 458 (876)
-|+++|++|+|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 46999999999999999999999999999999999999999999999999985 345667889
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCC---CCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGK---DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~---~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
+|+||+|++.+|.. |++|||.++. ...+ .+++.++++..++.++ ......+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-----------AHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHH
Confidence 99999999999876 9999999852 1122 2234444444444332 33445689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 48999999999999875 999999999999999999999875
No 24
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.4e-48 Score=418.77 Aligned_cols=216 Identities=26% Similarity=0.454 Sum_probs=179.3
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
.+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999964 2589999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+|+||+|+|.+|++|++|||. +.. .....+.++++..++.+++..+|++++|.+++++.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 499999999999999999999 642 234455667777788888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHH
Q 002817 539 PSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 539 p~IllLDE~tSaLD~~te~~i~~~l-~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
|++||||||||+||+.+++.+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++|+++. .+.|.+
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~ 254 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSS 254 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHH
Confidence 9999999999999999999998864 455568999999999999988999999999999999999999764 333433
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.7e-48 Score=423.94 Aligned_cols=221 Identities=31% Similarity=0.505 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC--CCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~--~~~~~lr~ 458 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+|+.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999933 23345678
Q ss_pred ceEEEeccCCCcc-ccHHHHHHcCCCC--C----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH
Q 002817 459 QIGLVNQEPALFA-TTIRENILYGKDD--A----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~-~TIreNI~~g~~~--~----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai 531 (876)
+||||+|++.+|. .||+|||.||... . ..+++.++++..++.++..+ +..+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-----------YPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-----------CGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHH
Confidence 9999999999995 5999999998521 1 23456666666666554433 345899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 532 ARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
||||+.+|++||||||||+||+.+...+.+.|.++. .|+|+|+|||+++.+.. ||+|+||++|+|++.|+++|+++.
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 48999999999998765 999999999999999999999987
Q ss_pred CCchHHH
Q 002817 609 PNSAYAA 615 (876)
Q Consensus 609 ~~g~y~~ 615 (876)
+...|..
T Consensus 230 p~~~~~a 236 (359)
T 3fvq_A 230 PADLDAA 236 (359)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 5554433
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.8e-48 Score=413.09 Aligned_cols=213 Identities=27% Similarity=0.439 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|+|+.+++.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCC-ccccHHHHHHcCCC----CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 461 GLVNQEPAL-FATTIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 461 ~~V~Q~~~L-f~~TIreNI~~g~~----~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
+||+|++.+ |+.|++||+.++.. ....+++.++++..++.++. .....+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-----------QRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-----------TSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHHHHHHHH
Confidence 999999987 67899999999852 22345566666665553332 223457999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 536 VK------NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 536 ~~------~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
++ +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988743 4699999999999864 9999999999999999999997
Q ss_pred c
Q 002817 607 S 607 (876)
Q Consensus 607 ~ 607 (876)
+
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
No 27
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.8e-48 Score=427.84 Aligned_cols=219 Identities=29% Similarity=0.503 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999988775 4789
Q ss_pred EEEeccCCCccc-cHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|||+|++.||.. ||+|||.||.. ..+. +++.++++..++.++.. ....+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHH
Confidence 999999999965 99999999741 2222 34555666655544433 344689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+.. ||+|+||++|+|++.|+++|+.+.+.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999988743 8999999999998765 99999999999999999999998765
Q ss_pred chHHH
Q 002817 611 SAYAA 615 (876)
Q Consensus 611 g~y~~ 615 (876)
..|..
T Consensus 227 ~~~v~ 231 (381)
T 3rlf_A 227 DRFVA 231 (381)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 55543
No 28
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-47 Score=405.99 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=185.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999963 469999999999999999999999999999999999999999999999999977 56778999
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
||||+|++.+|.. |++||+.++.. .... +++.++++..++.++. ..+..+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHHH
Confidence 9999999999876 99999988531 1222 3455555555544332 234568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++|+.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998874 58999999999999877 99999999999999999999864
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-47 Score=408.18 Aligned_cols=217 Identities=30% Similarity=0.476 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC----------C
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK----------G 450 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~----------~ 450 (876)
-|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. +
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999963 46999999999999999999999999999999999999999999999999986 2
Q ss_pred CCH---HHHhcceEEEeccCCCccc-cHHHHHHcCC---CCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCC
Q 002817 451 LDL---KWLRQQIGLVNQEPALFAT-TIRENILYGK---DDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (876)
Q Consensus 451 ~~~---~~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~---~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~ 519 (876)
++. ..+|++||||+|++.+|.. |++|||.++. .... .+++.++++..++.+++ ...+..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 444 3568899999999999876 9999999852 1122 22344444444443320 234456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEE
Q 002817 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIV 597 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Iv 597 (876)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998874 4899999999999986 49999999999999
Q ss_pred EecChhHHhcCCC
Q 002817 598 KTGSHEELISNPN 610 (876)
Q Consensus 598 e~Gt~~eL~~~~~ 610 (876)
+.|+++++.+.+.
T Consensus 233 ~~g~~~~~~~~~~ 245 (262)
T 1b0u_A 233 EEGDPEQVFGNPQ 245 (262)
T ss_dssp EEECHHHHHHSCC
T ss_pred EeCCHHHHHhCcc
Confidence 9999999987533
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-47 Score=407.57 Aligned_cols=213 Identities=30% Similarity=0.546 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 382 IEFKDVSFCYPSRPD--VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~--~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
|+++|++|+|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998652 67899
Q ss_pred eEEEeccC--CCccccHHHHHHcCCC-----CCCHHHHHHHHHHHhhh--hhHhcCchhhhhhhcCCCCCCCHHHHHHHH
Q 002817 460 IGLVNQEP--ALFATTIRENILYGKD-----DATMEEITRAAKLSEAM--SFISNLPERFETQVGERGIQLSGGQKQRIA 530 (876)
Q Consensus 460 i~~V~Q~~--~Lf~~TIreNI~~g~~-----~~~~~~v~~a~~~a~~~--~~i~~lp~G~~T~vGe~G~~LSGGQkQRIa 530 (876)
||||+|+| .+++.|++|||.++.. +...+++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 5788999999999742 22356677788777765 5544433 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcC
Q 002817 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 531 iARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 58999999999999876 999999999999999999998754
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-47 Score=399.42 Aligned_cols=208 Identities=25% Similarity=0.367 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH---Hh
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~---lr 457 (876)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -cceEEEeccCCCcc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 458 -QQIGLVNQEPALFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 458 -~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
++|+||+|++.+|. .|++||+.++.. ... .+++.++++..++.+ .......+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-----------KLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-----------CTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHH
Confidence 78999999999886 599999988631 111 223444444444322 23344568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecCh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~ 602 (876)
+||||++.+|++||||||||+||+++.+.+.+.|+++. +++|+|+|||+++.++.||+|++|++|+++++|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 48999999999998888999999999999999873
No 32
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-47 Score=418.05 Aligned_cols=217 Identities=31% Similarity=0.503 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 4689999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEeccCCCccc-cHHHHHHcCCCC--C----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGKDD--A----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~~--~----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|||+|++.+|.. |++|||.||... . ..+++.++++..++.++..+.| .+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999998521 1 1245667777776655544443 589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 899999999999875 599999999999999999999988644
Q ss_pred chH
Q 002817 611 SAY 613 (876)
Q Consensus 611 g~y 613 (876)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 444
No 33
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.6e-47 Score=404.53 Aligned_cols=214 Identities=23% Similarity=0.400 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~ 459 (876)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988775 456888
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCCC---------------CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCH
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKDD---------------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~~---------------~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSG 523 (876)
|+||+|++.+|. .|++|||.++... ...++.. ..+.+.++.+ |++.....+..+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 6999999987421 1111111 1122223333 444455667789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecC
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 601 (876)
|||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999998874 4899999999999886 599999999999999999
Q ss_pred hhH
Q 002817 602 HEE 604 (876)
Q Consensus 602 ~~e 604 (876)
++|
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 999
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.8e-47 Score=421.01 Aligned_cols=217 Identities=35% Similarity=0.542 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEeccCCCccc-cHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|||+|++.+|.. |++|||.||.. ... .+++.++++..++.++..+. ..+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY-----------PWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-----------GGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999965 99999999731 112 24466666666665544433 3589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988753 899999999999875 599999999999999999999988644
Q ss_pred chH
Q 002817 611 SAY 613 (876)
Q Consensus 611 g~y 613 (876)
..|
T Consensus 227 ~~~ 229 (362)
T 2it1_A 227 YKF 229 (362)
T ss_dssp BHH
T ss_pred chH
Confidence 444
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.2e-47 Score=417.31 Aligned_cols=219 Identities=29% Similarity=0.508 Sum_probs=188.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999942 2458999999999999999999999999999999999999999999999999987654 4789
Q ss_pred eEEEeccCCCccc-cHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH
Q 002817 460 IGLVNQEPALFAT-TIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA 532 (876)
||||+|++.+|.. |++|||.|+.. ..+ .+++.++++..++.++..+. ..+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-----------~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF-----------PHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-----------cccCCHHHHHHHHHH
Confidence 9999999999975 99999999731 112 34566666666665554433 358999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHhcCC
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~~~~ 609 (876)
|||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+++.+
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 8999999999998755 9999999999999999999998764
Q ss_pred CchH
Q 002817 610 NSAY 613 (876)
Q Consensus 610 ~g~y 613 (876)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 4333
No 36
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-47 Score=409.58 Aligned_cols=213 Identities=25% Similarity=0.369 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC--CCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~--~~~~~~lr~ 458 (876)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999963 46999999999999999999999999999999999999999999999999998 788888999
Q ss_pred ceEEEeccCCC-ccc--cHHHHHHcCCCC-------CCH---HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 459 QIGLVNQEPAL-FAT--TIRENILYGKDD-------ATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 459 ~i~~V~Q~~~L-f~~--TIreNI~~g~~~-------~~~---~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
+|+||+|++.+ |+. |++|||.++... .+. +++.++++..++ +.....+..+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----------SAKAQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHH
Confidence 99999999865 555 999999997411 122 223344433333 223344566899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeE--EEEcCCchhhh-hcCEEEEEeCCeEEEecC
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTT--VVVAHRLSTIR-NADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~--I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt 601 (876)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|+|++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988743 8999 99999999985 599999999999999999
Q ss_pred hhHHhc
Q 002817 602 HEELIS 607 (876)
Q Consensus 602 ~~eL~~ 607 (876)
++|+.+
T Consensus 247 ~~~~~~ 252 (279)
T 2ihy_A 247 VEDILT 252 (279)
T ss_dssp HHHHCS
T ss_pred HHHHhc
Confidence 999874
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8.4e-47 Score=415.52 Aligned_cols=215 Identities=32% Similarity=0.522 Sum_probs=187.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|++ . +|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+.+. .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999952 4 8999999999999999999999999999999999999999999999999987654 478999
Q ss_pred EEeccCCCccc-cHHHHHHcCCC---CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 462 LVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~---~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
||+|++.+|.. |++|||.||.. ....+++.++++..++.++..+. ..+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999999731 11226677777777765554443 35899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCCchH
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y 613 (876)
+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988743 899999999999865 599999999999999999999997644433
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.3e-46 Score=417.14 Aligned_cols=217 Identities=30% Similarity=0.478 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+++.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4689999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEeccCCCcc-ccHHHHHHcCCC--CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 461 GLVNQEPALFA-TTIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 461 ~~V~Q~~~Lf~-~TIreNI~~g~~--~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|||+|++.+|. .|++|||.||.. ..+. +++.++++..++.++..+ +..+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----------YPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-----------CTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999996 599999999853 1222 345566666655444333 44689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcCCC
Q 002817 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~~~ 610 (876)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++.+.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 899999999999875 599999999999999999999988654
Q ss_pred chH
Q 002817 611 SAY 613 (876)
Q Consensus 611 g~y 613 (876)
..|
T Consensus 235 ~~~ 237 (372)
T 1v43_A 235 SVF 237 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 444
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.7e-47 Score=417.97 Aligned_cols=219 Identities=32% Similarity=0.473 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCCc--cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC---HHH
Q 002817 381 HIEFKDVSFCYPSRPDVA--IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKW 455 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~--vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~---~~~ 455 (876)
.|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 45 899999999999999999999999999999999999999999999999987621 334
Q ss_pred HhcceEEEeccCCCccc-cHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHH
Q 002817 456 LRQQIGLVNQEPALFAT-TIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (876)
Q Consensus 456 lr~~i~~V~Q~~~Lf~~-TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 528 (876)
.|++||||+|++.+|.. |++|||.||.. ... .+++.++++..++.++..+. ..+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHH
Confidence 57899999999999975 99999999852 122 34466666666665554443 35899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 002817 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (876)
Q Consensus 529 IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL 605 (876)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 8999999999998755 999999999999999999999
Q ss_pred hcCCCchH
Q 002817 606 ISNPNSAY 613 (876)
Q Consensus 606 ~~~~~g~y 613 (876)
++++...|
T Consensus 229 ~~~p~~~~ 236 (353)
T 1oxx_K 229 YDNPVSIQ 236 (353)
T ss_dssp HHSCSSHH
T ss_pred HhCcccHH
Confidence 87644444
No 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.9e-47 Score=396.78 Aligned_cols=208 Identities=30% Similarity=0.424 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
|+++|++++|+. +|+|+||++++ |++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEeccCCCccc-cHHHHHHcCCCCCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 462 LVNQEPALFAT-TIRENILYGKDDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 462 ~V~Q~~~Lf~~-TIreNI~~g~~~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
||+|++.+|.. |++||+.|+..... .+++.++++..++.++ ......+||||||||++||||++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999976 99999999853221 2334444444433322 23345689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHhcC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+++|+++.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999988743 899999999999875 5999999999999999999999875
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.8e-46 Score=396.03 Aligned_cols=208 Identities=23% Similarity=0.375 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++|+ ++|+|+||+|++||+++|+||||||||||+++|.|+++|+ |+|.++|.++.+++...+|++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999986 3899999999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEeccCCCccc-cHHHHHHcCC-CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 461 GLVNQEPALFAT-TIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~-~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+||+|++.+|.. |++||+.++. +..+.+++.++++..++.++. ..+..+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 9999999985 222356677777766654432 345678999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhh-hhcCEEEEEeCCeEEEecChhHHhc
Q 002817 539 PS-------ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 539 p~-------IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i-~~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
|+ +||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+ +.||+|++|++|++++.|+++|+.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 589999999999998 5699999999999999999999874
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.6e-46 Score=417.48 Aligned_cols=217 Identities=28% Similarity=0.465 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC------CCHH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG------LDLK 454 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~------~~~~ 454 (876)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+ ++.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999963 469999999999999999999999999999999999999999999999999876 554
Q ss_pred HHhcceEEEeccCCCcc-ccHHHHHHcCCC--CCC----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 455 WLRQQIGLVNQEPALFA-TTIRENILYGKD--DAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~--~~~----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
.+++||||+|++.+|. .|++|||.||.. ... .+++.++++..++.++..+. ..+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-----------cccCCHHHHH
Confidence 3678999999999985 599999999731 122 23466666666665544333 3589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~e 604 (876)
|+||||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 899999999999875 599999999999999999999
Q ss_pred HhcCCCchH
Q 002817 605 LISNPNSAY 613 (876)
Q Consensus 605 L~~~~~g~y 613 (876)
+++++...|
T Consensus 227 l~~~p~~~~ 235 (372)
T 1g29_1 227 VYDKPANTF 235 (372)
T ss_dssp HHHSCSBHH
T ss_pred HHhCcccHH
Confidence 987654444
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2e-46 Score=397.17 Aligned_cols=210 Identities=27% Similarity=0.372 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHHHH-hc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-RQ 458 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~~l-r~ 458 (876)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.++|.++.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 4699999999999999999999999999999999999 89999999999999998887665 55
Q ss_pred ceEEEeccCCCccc-cHHHHHHcCCC-----CCCH----HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCC-CCHHHHH
Q 002817 459 QIGLVNQEPALFAT-TIRENILYGKD-----DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQ-LSGGQKQ 527 (876)
Q Consensus 459 ~i~~V~Q~~~Lf~~-TIreNI~~g~~-----~~~~----~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~-LSGGQkQ 527 (876)
.++||+|+|.+|.+ |++||+.++.. .... +++.++++..++. ++-.+..+ .+ |||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~----~~~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD------ESYLSRYL----NEGFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC------GGGGGSBT----TCC----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC------hhHhcCCc----ccCCCHHHHH
Confidence 69999999999875 99999987531 1121 2233333333321 11122222 34 9999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh--cCEEEEEeCCeEEEecChhH
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~Gt~~e 604 (876)
|++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999998875 48999999999999886 59999999999999999873
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4e-45 Score=390.49 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=178.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCeeCCCCCHHHH-h
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWL-R 457 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~--~~p~~G~I~idG~di~~~~~~~l-r 457 (876)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.++|.++.+++.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4699999999999999999999999999999999999 67999999999999998887665 4
Q ss_pred cceEEEeccCCCccc-cHHHHHHcCC---------CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC-C-CCCHHH
Q 002817 458 QQIGLVNQEPALFAT-TIRENILYGK---------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERG-I-QLSGGQ 525 (876)
Q Consensus 458 ~~i~~V~Q~~~Lf~~-TIreNI~~g~---------~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G-~-~LSGGQ 525 (876)
+.|+||+|+|.+|.+ |++||+.++. +..+.++..+. +.+.++.+ |+++...++. . +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL-----MEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHH-----HHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHH-----HHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999999876 9999997642 11222222111 11122222 3333333333 2 599999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh--cCEEEEEeCCeEEEecCh
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSH 602 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~--aD~Iivl~~G~Ive~Gt~ 602 (876)
|||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 48999999999999876 899999999999999999
Q ss_pred hHHh
Q 002817 603 EELI 606 (876)
Q Consensus 603 ~eL~ 606 (876)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8764
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-45 Score=391.76 Aligned_cols=209 Identities=20% Similarity=0.322 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 382 IEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 382 I~~~~vsf~y~~~-~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
|+++|++++|++. .+.++|+|+||+|+ ||+++|+||||||||||+++|.|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998765 33 7899
Q ss_pred E-EEeccCCCccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 G-LVNQEPALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~-~V~Q~~~Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+ ||+|+|.+ +.|++||+.++.+ +...+++.++++..++. +.....+..+||||||||++|||||++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLG----------EEILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCC----------GGGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCC----------hhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9 99999999 9999999998642 34455666665554432 033455677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhh-hcC-EEEEEeCCeEEEecChhHHhcC
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NAD-VIAVVQGRKIVKTGSHEELISN 608 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~-~aD-~Iivl~~G~Ive~Gt~~eL~~~ 608 (876)
+|++||||||||+||+++.+.+.+.|+++.+ |+|+|||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999999999999999988754 9999999999875 599 9999999999999999998753
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.6e-45 Score=388.58 Aligned_cols=200 Identities=27% Similarity=0.422 Sum_probs=172.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 4899999999962 24699999999999999999999999999999999999999999998 35679
Q ss_pred EEEeccCCCc-cccHHHHHHcCCCC-------CC---HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 461 GLVNQEPALF-ATTIRENILYGKDD-------AT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 461 ~~V~Q~~~Lf-~~TIreNI~~g~~~-------~~---~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
+||+|+|.+| +.|++|||.++... .. .+++.++++..++.++ ...+..+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL-----------AKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH-----------hcCChhhCCHHHHHHH
Confidence 9999999887 67999999997411 11 2345555555554433 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhh-hcCEEEEEeCCeEEEecChhHHh
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~-~aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+ ++.|+++|+.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988754 899999999999984 599999999999 9999999986
Q ss_pred c
Q 002817 607 S 607 (876)
Q Consensus 607 ~ 607 (876)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-44 Score=370.68 Aligned_cols=196 Identities=20% Similarity=0.351 Sum_probs=166.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++. .+|+.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 6999999999952 6999999999999999999999999999999999999999999999999986 368899
Q ss_pred EEEeccCCCccc-cHHHHHHcCCC----CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 002817 461 GLVNQEPALFAT-TIRENILYGKD----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (876)
Q Consensus 461 ~~V~Q~~~Lf~~-TIreNI~~g~~----~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl 535 (876)
+||+|+|.+|.+ |++||+.++.. ....+++.++++..+ ++.. ..++.+||||||||++||||+
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999988631 122455555554443 3334 566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEEeCCeEE
Q 002817 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIV 597 (876)
Q Consensus 536 ~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl~~G~Iv 597 (876)
+++|++||||||||+||+.+...+.+.|+++. +++|+|++||+++.+..++..+++.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 99999999999999999999999999998875 479999999999998884444456667763
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=8.5e-43 Score=375.97 Aligned_cols=236 Identities=15% Similarity=0.267 Sum_probs=192.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccEEEEeEEEECCC
Q 002817 314 HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPS 393 (876)
Q Consensus 314 ~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~ 393 (876)
+..+-+.+.+++.+... ..++..+...+..++++.++.+|+.++++.+++.... .+ ..+...+.|+++||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~-~~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG--EG-SWKSILTFFNYQNIELITF- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS--SC-CTHHHHHHHHHTTCCHHHH-
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--CC-cccccCCeEEEEEEEEEcC-
Confidence 33444555555444334 4688888889999999999999999999875442211 11 1111224589999999996
Q ss_pred CCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcccc
Q 002817 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (876)
Q Consensus 394 ~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~T 473 (876)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| ++||+|+|++|++|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 36999999999999999999999999999999999999 8988 57899999999999
Q ss_pred HHH-HHHcCCCCCCHHHHHHHHHHHhhhhhHhc-CchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 002817 474 IRE-NILYGKDDATMEEITRAAKLSEAMSFISN-LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551 (876)
Q Consensus 474 Ire-NI~~g~~~~~~~~v~~a~~~a~~~~~i~~-lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaL 551 (876)
++| ||.|+ +++++ +++++++. ||+|+| |.+|||||||| |||++++|+||| ||+|
T Consensus 169 i~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 169 LADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp GTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 998 99997 44443 34667877 999998 78999999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhcCCCchHHHHHHHH
Q 002817 552 DAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (876)
Q Consensus 552 D~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~~~~g~y~~l~~~~ 620 (876)
|+++++.|.. +|||+++++.||+| +|++|+|++.|+|+|| ++.|++++..+
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~ 275 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRL 275 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTT
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHc
Confidence 9999988852 39999999999999 9999999999999999 47888887654
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.6e-35 Score=349.31 Aligned_cols=199 Identities=24% Similarity=0.307 Sum_probs=166.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.++++|++++|.+ ..|+++||++++||++||+||||||||||+++|.|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999953 36899999999999999999999999999999999999999999872 369
Q ss_pred EEEeccCCC-ccccHHHHHHcC-CCC-CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPAL-FATTIRENILYG-KDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~L-f~~TIreNI~~g-~~~-~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
|||||++.+ ++.|++||+.+. .+. ...+.+.++++..++. ........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-----------DLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 678999999764 111 1123333444333322 22233456899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeC--CeEEEecChhHHhc
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG--RKIVKTGSHEELIS 607 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~--G~Ive~Gt~~eL~~ 607 (876)
+|++|||||||++||..+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++ |++++.|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998874 48999999999999875 999999997 88889999988864
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.3e-35 Score=342.45 Aligned_cols=199 Identities=21% Similarity=0.242 Sum_probs=165.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.++++|++++|++ ..|++.||+|++||++||+||||||||||+++|.|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999963 3588889999999999999999999999999999999999999998875 69
Q ss_pred EEEeccCCC-ccccHHHHHHcCCCC---CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 461 GLVNQEPAL-FATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 461 ~~V~Q~~~L-f~~TIreNI~~g~~~---~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
+|+||++.. +..|++||+.+.... ...+.+.++++..++ .........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL-----------HRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG-----------GGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999865 578999999875322 122233333333333 23334455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeC--CeEEEecChhHHh
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG--RKIVKTGSHEELI 606 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~--G~Ive~Gt~~eL~ 606 (876)
++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|+||++ |++...|++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998874 48999999999999876 999999997 5666777776654
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-35 Score=345.47 Aligned_cols=199 Identities=24% Similarity=0.320 Sum_probs=165.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999953 36899999999999999999999999999999999999999999862 269
Q ss_pred EEEeccCCC-ccccHHHHHHcC-CCC-CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHcc
Q 002817 461 GLVNQEPAL-FATTIRENILYG-KDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (876)
Q Consensus 461 ~~V~Q~~~L-f~~TIreNI~~g-~~~-~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~ 537 (876)
+||||++.. ++.|+.||+... .+. ...+.+.+ .++.+ |+.........+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE---------LLKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH---------TTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH---------HHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 677999998754 111 11122222 23322 33333445567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeC--CeEEEecChhHHhc
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG--RKIVKTGSHEELIS 607 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~--G~Ive~Gt~~eL~~ 607 (876)
+|++|||||||++||..+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999996 88999999988864
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.8e-35 Score=355.72 Aligned_cols=205 Identities=23% Similarity=0.381 Sum_probs=154.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcce
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i 460 (876)
-|+++|++|+|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999742 246899999999999999999999999999999999999999999999872 148
Q ss_pred EEEeccCCC-----ccccHHHHHHc-------------------------------------------------------
Q 002817 461 GLVNQEPAL-----FATTIRENILY------------------------------------------------------- 480 (876)
Q Consensus 461 ~~V~Q~~~L-----f~~TIreNI~~------------------------------------------------------- 480 (876)
+||+|++.. .+.|+++|+.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887631 23466666543
Q ss_pred -----------CCC---CCC--------HHHHH-------------HHHH--------HHhhhhhHhcCchhhhhhh--c
Q 002817 481 -----------GKD---DAT--------MEEIT-------------RAAK--------LSEAMSFISNLPERFETQV--G 515 (876)
Q Consensus 481 -----------g~~---~~~--------~~~v~-------------~a~~--------~a~~~~~i~~lp~G~~T~v--G 515 (876)
+.+ ..+ .+++. +++. ...+.+.++.+ |++... .
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 110 000 00000 0000 01122223332 333322 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCC
Q 002817 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (876)
Q Consensus 516 e~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G 594 (876)
.+..+||||||||++||||++.+|+||||||||++||..+...+.+.|++. ++|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 456689999999999999999999999999999999999999999999875 5799999999999865 9999999999
Q ss_pred eEEEecC
Q 002817 595 KIVKTGS 601 (876)
Q Consensus 595 ~Ive~Gt 601 (876)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9998775
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-34 Score=335.51 Aligned_cols=198 Identities=26% Similarity=0.380 Sum_probs=163.3
Q ss_pred EeEEEECCCCCCCccccceeEEecCC-----CEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAG-----KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G-----~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
++++|+|+.. ..+++|+||++++| |.+||+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 6788999742 35799999999999 7899999999999999999999999999972 21 236
Q ss_pred eEEEeccCC-CccccHHHHHHcCCC--CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 460 IGLVNQEPA-LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 460 i~~V~Q~~~-Lf~~TIreNI~~g~~--~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
++|++|++. .|+.|++||+..... ....+.+.++++..++.+ .......+||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 578899999865321 123344444444444322 223445689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeC--CeEEEecChhHHhcC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG--RKIVKTGSHEELISN 608 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~--G~Ive~Gt~~eL~~~ 608 (876)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||+||++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999876 999999997 999999999999864
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.8e-34 Score=337.66 Aligned_cols=197 Identities=24% Similarity=0.342 Sum_probs=156.7
Q ss_pred cEEE--------EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EE
Q 002817 381 HIEF--------KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI---------LL 443 (876)
Q Consensus 381 ~I~~--------~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I---------~i 443 (876)
.|++ +|++++|+.. ..+|+|+| ++++||++||+||||||||||+++|.|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 8999999642 24899999 999999999999999999999999999999999996 45
Q ss_pred CCeeCCCCCHHH--HhcceEEEeccC----CCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCC
Q 002817 444 DGNNIKGLDLKW--LRQQIGLVNQEP----ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517 (876)
Q Consensus 444 dG~di~~~~~~~--lr~~i~~V~Q~~----~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~ 517 (876)
+|.++.++.... .+..+++++|.. .++.+|++||+..... .+++.++++..++.++ .+. .
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~-------~~~----~ 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENV-------LDR----E 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTG-------GGS----B
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCch-------hCC----C
Confidence 666554321111 234688988864 3455799999976432 2335555555544332 222 3
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCC
Q 002817 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (876)
Q Consensus 518 G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G 594 (876)
..+||||||||++|||||+++|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 35799999999999999999999999999999999999999999998874 48999999999999866 9999999865
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-33 Score=340.76 Aligned_cols=205 Identities=25% Similarity=0.411 Sum_probs=137.4
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCeeC
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVI---------------------SLIERFYEPL-------SGEILLDGNNI 448 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll---------------------~lL~~~~~p~-------~G~I~idG~di 448 (876)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8889999998 45566666554
Q ss_pred CCCCHHHHhcceEEEeccCCCc--------------------cccHHHHHHcCCC-CCC--HHH-----HHHHHHHHhhh
Q 002817 449 KGLDLKWLRQQIGLVNQEPALF--------------------ATTIRENILYGKD-DAT--MEE-----ITRAAKLSEAM 500 (876)
Q Consensus 449 ~~~~~~~lr~~i~~V~Q~~~Lf--------------------~~TIreNI~~g~~-~~~--~~~-----v~~a~~~a~~~ 500 (876)
.. ..|+.+++|+|.+.++ ..|++||+.+... ... ..+ +.++.+..++
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF- 185 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH-
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH-
Confidence 32 2355677777655432 4599999988531 100 111 1111122221
Q ss_pred hhHhcCchhhhhh-hcCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 002817 501 SFISNLPERFETQ-VGERGIQLSGGQKQRIAISRAIVKNPS--ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVA 576 (876)
Q Consensus 501 ~~i~~lp~G~~T~-vGe~G~~LSGGQkQRIaiARAl~~~p~--IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~It 576 (876)
++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+||
T Consensus 186 --l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 186 --LQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp --HHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --HHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 2222 22111 233456899999999999999999998 999999999999999999999998764 589999999
Q ss_pred CCchhhhhcCEEEEE------eCCeEEEecChhHHhcCCC
Q 002817 577 HRLSTIRNADVIAVV------QGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 577 Hrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~~ 610 (876)
|+++.+..||+|++| ++|++++.|+++|+.+.+.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999999999999 8999999999999987633
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-33 Score=340.46 Aligned_cols=201 Identities=25% Similarity=0.396 Sum_probs=150.4
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHH---------------------cCCCCCccEEEECCeeCCCCCHHH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE---------------------RFYEPLSGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~---------------------~~~~p~~G~I~idG~di~~~~~~~ 455 (876)
..+|+|+||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 35899999999999999999999999999998764 122344578999999887554221
Q ss_pred Hhc-----------------------------------------ceEEEeccCCC-------------------------
Q 002817 456 LRQ-----------------------------------------QIGLVNQEPAL------------------------- 469 (876)
Q Consensus 456 lr~-----------------------------------------~i~~V~Q~~~L------------------------- 469 (876)
.+. ..|++.|+..+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 11333333222
Q ss_pred --------ccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCCCHHHHHHHHHHHHHccCC-
Q 002817 470 --------FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIVKNP- 539 (876)
Q Consensus 470 --------f~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~LSGGQkQRIaiARAl~~~p- 539 (876)
++.|++||+.+.......++..+++. .+ |+. ...+....+||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASIPKIKRKLETLY---------DV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHH---------HT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHH---------Hc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 23589999988653221222222222 22 121 2345667899999999999999999887
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE------eCCeEEEecChhHHhcC
Q 002817 540 --SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 540 --~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~ 608 (876)
+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.++.||+|++| ++|+|+++|+++|+.+.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 5999999999999999999999998874 489999999999999999999999 89999999999999876
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.3e-32 Score=334.45 Aligned_cols=197 Identities=23% Similarity=0.333 Sum_probs=160.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
..|...|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|.| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 36888899999963 469999999999999999999999999999999995 554 5654321 124
Q ss_pred eEEEeccC-CC-ccccHHHHHHcCCCCCCHHHHHHHHHHHhhh-hhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 460 IGLVNQEP-AL-FATTIRENILYGKDDATMEEITRAAKLSEAM-SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 460 i~~V~Q~~-~L-f~~TIreNI~~g~~~~~~~~v~~a~~~a~~~-~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
++|++|++ .+ .+.|++||+.+..... .+++.++++..++. +. .+.. ..+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~-------~~~~----~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEM-------IAMP----ISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHH-------HHSB----GGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhh-------hcCC----cccCCHHHHHHHHHHHHHh
Confidence 78999985 34 4569999998722112 56666666665542 22 2222 3479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCeEE-EecChhHHhc
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV-KTGSHEELIS 607 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv-e~Gt~~eL~~ 607 (876)
.+|+||||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 68999999999999876 9999999999997 5899999875
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.4e-34 Score=332.06 Aligned_cols=196 Identities=24% Similarity=0.348 Sum_probs=152.2
Q ss_pred EEE-EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE---------EECCeeCCCC
Q 002817 382 IEF-KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI---------LLDGNNIKGL 451 (876)
Q Consensus 382 I~~-~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I---------~idG~di~~~ 451 (876)
.++ +|++++|++. ..+|+|+| +|++||++|||||||||||||+++|.|+++|++|++ .++|.++.+.
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5899999642 24899999 999999999999999999999999999999999995 3566554332
Q ss_pred CHHH--HhcceEEEeccCCC----ccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 452 DLKW--LRQQIGLVNQEPAL----FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 452 ~~~~--lr~~i~~V~Q~~~L----f~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
.... .+..+++++|+... +.+|++||+..... .+++.++++..++.++ .+ ....+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~lgl~~~-------~~----~~~~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKALELENV-------LE----REIQHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHTTCTTT-------TT----SBGGGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHcCCChh-------hh----CChhhCCHHH
Confidence 1111 23468899987543 34699999865322 2335555555544222 22 2345799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCC
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGR 594 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G 594 (876)
|||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998764 48999999999999876 9999999865
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-32 Score=335.05 Aligned_cols=207 Identities=29% Similarity=0.459 Sum_probs=155.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHH---------HHHHcCCC------CCcc------EEEECCeeCCCCCH---
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVI---------SLIERFYE------PLSG------EILLDGNNIKGLDL--- 453 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll---------~lL~~~~~------p~~G------~I~idG~di~~~~~--- 453 (876)
..|+|+||+|++|++++|+||||||||||+ +++.+... +.+| .|.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 369999999999999999999999999997 34444333 3333 36666666543221
Q ss_pred -------HHHh-------------------------------cceEEEeccCCCcc------------------------
Q 002817 454 -------KWLR-------------------------------QQIGLVNQEPALFA------------------------ 471 (876)
Q Consensus 454 -------~~lr-------------------------------~~i~~V~Q~~~Lf~------------------------ 471 (876)
+.+| +..|+++|+..++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 23577887765543
Q ss_pred ---------ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC---
Q 002817 472 ---------TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP--- 539 (876)
Q Consensus 472 ---------~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p--- 539 (876)
.|++||+.|.......++..++++..+ -|| ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vG---------L~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVG---------LGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTT---------GGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcC---------Cch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 466777766543222222333332222 233 3478899999999999999999999876
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE------eCCeEEEecChhHHhcCCCch
Q 002817 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTGSHEELISNPNSA 612 (876)
Q Consensus 540 ~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~~g~ 612 (876)
+||||||||++||+++++.+.+.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|||+|+++. .+.
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~-~~s 906 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN-PHS 906 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC-TTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC-Cch
Confidence 7999999999999999999999998874 589999999999999999999999 89999999999999987 444
Q ss_pred HHH
Q 002817 613 YAA 615 (876)
Q Consensus 613 y~~ 615 (876)
|..
T Consensus 907 yt~ 909 (916)
T 3pih_A 907 YTG 909 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-31 Score=314.85 Aligned_cols=197 Identities=22% Similarity=0.355 Sum_probs=150.8
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE-----------EECCeeCCCCCHH
Q 002817 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-----------LLDGNNIKGLDLK 454 (876)
Q Consensus 386 ~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I-----------~idG~di~~~~~~ 454 (876)
|++++|... ...|++++ ++++||++||+||||||||||+++|.|+++|++|+| .++|.++.++...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568999642 34677777 699999999999999999999999999999999998 3455544443344
Q ss_pred HHhcceEEE--eccCCC----cc---ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 455 WLRQQIGLV--NQEPAL----FA---TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 455 ~lr~~i~~V--~Q~~~L----f~---~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
.+++.+..+ +|.... +. .++.+++.... ....+++.++++..++.++. .....+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENVL-----------KRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGGG-----------GSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcchh-----------CCChHHCCHHH
Confidence 445554333 332211 11 26777776543 23456677777766654432 23346899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhh-cCEEEEEeCCeEE
Q 002817 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv 597 (876)
|||++|||||+++|+|||||||||+||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|..+
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 999999999999999999999999999999999999998875 48999999999999876 9999999987543
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=8e-32 Score=313.93 Aligned_cols=192 Identities=20% Similarity=0.363 Sum_probs=149.1
Q ss_pred eEEEECCCCCCCccccceeEE-ecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE-----------EECCeeCCCCCH
Q 002817 386 DVSFCYPSRPDVAIFDKFCLD-IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-----------LLDGNNIKGLDL 453 (876)
Q Consensus 386 ~vsf~y~~~~~~~vL~~isl~-i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I-----------~idG~di~~~~~ 453 (876)
+++.+|.. +. ++-..|. +++||++||+||||||||||+++|.|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~--~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKV--NG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESST--TS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCC--Cc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 56788963 22 3444444 45999999999999999999999999999999998 677876643322
Q ss_pred HH------HhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 454 KW------LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 454 ~~------lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
.. .+..+.+++|.+.++.+|+++++....... ++.++++..++.+. .+.. -.+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~---~~~~~l~~l~l~~~-------~~~~----~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERG---KKDEVKELLNMTNL-------WNKD----ANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSS---CHHHHHHHTTCGGG-------TTSB----GGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHH---HHHHHHHHcCCchh-------hcCC----hhhCCHHHHH
Confidence 22 223456667777788899999886443322 33444444444322 2223 3579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhh-cCEEEEEeCCe
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~-aD~Iivl~~G~ 595 (876)
|++|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999998789999999999999876 99999998764
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=2.2e-30 Score=312.65 Aligned_cols=210 Identities=23% Similarity=0.416 Sum_probs=157.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHH-HHcCC-------CC---------------
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL-IERFY-------EP--------------- 436 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~l-L~~~~-------~p--------------- 436 (876)
..|+++|+++. .|+|+||+|++||++||+|+||||||||++. |.|.. .|
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45999999861 5999999999999999999999999999996 65443 22
Q ss_pred ---Ccc-------EEEECCeeCCCCCH----------HHHhcceEEEec---------c---------------------
Q 002817 437 ---LSG-------EILLDGNNIKGLDL----------KWLRQQIGLVNQ---------E--------------------- 466 (876)
Q Consensus 437 ---~~G-------~I~idG~di~~~~~----------~~lr~~i~~V~Q---------~--------------------- 466 (876)
.+| .|.+||.++..-+. +.+|+.++++|+ .
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998864332 344543333322 1
Q ss_pred -CCCc-------------------------cccHHHHHH--------cCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhh
Q 002817 467 -PALF-------------------------ATTIRENIL--------YGKDDATMEEITRAAKLSEAMSFISNLPERFET 512 (876)
Q Consensus 467 -~~Lf-------------------------~~TIreNI~--------~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T 512 (876)
-..+ ..||.||+. |.... +++.+ ..+.++.+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~ 721 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE---SAIFR------ALDTLREV--GLGY 721 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS---HHHHH------HHHHHHHT--TCTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc---hHHHH------HHHHHHHc--CCCc
Confidence 0111 125555553 32111 11111 12223333 3333
Q ss_pred -hhcCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCE
Q 002817 513 -QVGERGIQLSGGQKQRIAISRAIVKN---PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADV 587 (876)
Q Consensus 513 -~vGe~G~~LSGGQkQRIaiARAl~~~---p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~ 587 (876)
..+....+||||||||++|||||+++ |+||||||||++||..+.+.+.+.|+++. +|+|+|+|||+++.++.||+
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 35777889999999999999999996 79999999999999999999999998874 68999999999999988999
Q ss_pred EEEE------eCCeEEEecChhHHhcC
Q 002817 588 IAVV------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 588 Iivl------~~G~Ive~Gt~~eL~~~ 608 (876)
|++| ++|+|++.|+++|+.+.
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9999 79999999999999876
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-34 Score=325.11 Aligned_cols=179 Identities=14% Similarity=0.149 Sum_probs=145.8
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc-E-EEECCeeCCCCCHHHHhcceEEEeccCCCcc----ccHH
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-E-ILLDGNNIKGLDLKWLRQQIGLVNQEPALFA----TTIR 475 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G-~-I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~----~TIr 475 (876)
++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| | .|+.++||||++.+|. .|++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccchh
Confidence 79999999999999999999999999999999999999 9 99998 1 3788999999986543 5899
Q ss_pred HHHHcCCCC---C-CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH--HccCCCE----EEEe
Q 002817 476 ENILYGKDD---A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA--IVKNPSI----LLLD 545 (876)
Q Consensus 476 eNI~~g~~~---~-~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA--l~~~p~I----llLD 545 (876)
||+ ||... . ..+++. +.+..+ |++.... ..+||||||||++|||| |+.+|++ ||||
T Consensus 201 eni-~~~~~~~~~~~~~~~~---------~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 201 LPT-WGQSLTSGATLLHNKQ---------PMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp CTT-CSCBCBSSCCSSCCBC---------CEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhh-cccccccCcchHHHHH---------HHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 999 86421 1 111111 112222 3443332 67999999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCch------hh-hhcCE-----EEEEe-CCeEEEecChhHHhc
Q 002817 546 E-ATSALDAESENSVQEALDRVMVGRTTVVVAHRLS------TI-RNADV-----IAVVQ-GRKIVKTGSHEELIS 607 (876)
Q Consensus 546 E-~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls------~i-~~aD~-----Iivl~-~G~Ive~Gt~~eL~~ 607 (876)
| |||+||+. .+.+.+.+++. ++|+|+|+|+.+ .+ +.||+ |++|+ +|+|+ .|+++++.+
T Consensus 267 EpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 9 99999999 66677777664 789999999988 44 45999 99999 99999 999998854
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=2.5e-30 Score=294.92 Aligned_cols=201 Identities=19% Similarity=0.255 Sum_probs=154.7
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCccE
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--------------------------------------PLSGE 440 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~--------------------------------------p~~G~ 440 (876)
.+++++|++++| +++||||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999966553 45789
Q ss_pred EEECCeeCCCCCHHHHhcc-eEEEeccCCCccccHHHHHHcCCCCCCH--------------------------------
Q 002817 441 ILLDGNNIKGLDLKWLRQQ-IGLVNQEPALFATTIRENILYGKDDATM-------------------------------- 487 (876)
Q Consensus 441 I~idG~di~~~~~~~lr~~-i~~V~Q~~~Lf~~TIreNI~~g~~~~~~-------------------------------- 487 (876)
+.+||.+++..++..+++. +++++|++.++-.+..++..|-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987778888777 8999999988877766555443211100
Q ss_pred ------------HHHHHHHHH-------------HhhhhhHhcC--c----------------hhhhh---hhcCCCCC-
Q 002817 488 ------------EEITRAAKL-------------SEAMSFISNL--P----------------ERFET---QVGERGIQ- 520 (876)
Q Consensus 488 ------------~~v~~a~~~-------------a~~~~~i~~l--p----------------~G~~T---~vGe~G~~- 520 (876)
+++.+.+.. ....+.+..+ | .|.+. .++.++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 000000000 0011112222 1 12222 34555544
Q ss_pred -------CCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEE
Q 002817 521 -------LSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 521 -------LSGGQkQRIaiARAl~~~p--~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
||||||||++||||++++| ++||||||||+||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988899999999999999999999999
Q ss_pred ----eCCeEEEec
Q 002817 592 ----QGRKIVKTG 600 (876)
Q Consensus 592 ----~~G~Ive~G 600 (876)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999998653
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=6.2e-30 Score=308.28 Aligned_cols=215 Identities=24% Similarity=0.393 Sum_probs=159.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHH-c----CCC---CCcc-------------
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-R----FYE---PLSG------------- 439 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~-~----~~~---p~~G------------- 439 (876)
.++++|++. ..|+|+||+|++|+++||+|+||||||||++.|+ | .+. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888852 2599999999999999999999999999999854 2 111 1233
Q ss_pred EEEECCeeCCCCC---HH-------HHh---------cceEEEeccCCC-------------------------------
Q 002817 440 EILLDGNNIKGLD---LK-------WLR---------QQIGLVNQEPAL------------------------------- 469 (876)
Q Consensus 440 ~I~idG~di~~~~---~~-------~lr---------~~i~~V~Q~~~L------------------------------- 469 (876)
.|.+||.++..-. +. ..| +.+||++|...+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885321 11 122 346888875321
Q ss_pred ------------------------ccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCHH
Q 002817 470 ------------------------FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGG 524 (876)
Q Consensus 470 ------------------------f~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSGG 524 (876)
.+.|+.||+.|.... .++.++ .+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~~------~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKRK------LETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHHH------HHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHHH------HHHHHHc--CCCcccccCchhhCCHH
Confidence 022566666654321 111111 1223333 3443 467778899999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE------eCC
Q 002817 525 QKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QGR 594 (876)
Q Consensus 525 QkQRIaiARAl~~~p---~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G 594 (876)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.++.||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998764 589999999999999999999999 799
Q ss_pred eEEEecChhHHhcCCCchHHH
Q 002817 595 KIVKTGSHEELISNPNSAYAA 615 (876)
Q Consensus 595 ~Ive~Gt~~eL~~~~~g~y~~ 615 (876)
+|++.|+++++.+. ...|..
T Consensus 930 ~Iv~~g~~~el~~~-~~~~t~ 949 (972)
T 2r6f_A 930 QIVAVGTPEEVAEV-KESHTG 949 (972)
T ss_dssp SEEEEESHHHHHTC-TTCHHH
T ss_pred EEEEecCHHHHHhC-chhHHH
Confidence 99999999999876 334433
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=2.4e-29 Score=304.34 Aligned_cols=215 Identities=21% Similarity=0.372 Sum_probs=157.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHH-----cCCC---CCccE-----------
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-----RFYE---PLSGE----------- 440 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~-----~~~~---p~~G~----------- 440 (876)
..++++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999852 2599999999999999999999999999999854 2222 23343
Q ss_pred --EEECCeeCCCC---CHH-------HHh---------cceEEEeccCCC---------------------c--------
Q 002817 441 --ILLDGNNIKGL---DLK-------WLR---------QQIGLVNQEPAL---------------------F-------- 470 (876)
Q Consensus 441 --I~idG~di~~~---~~~-------~lr---------~~i~~V~Q~~~L---------------------f-------- 470 (876)
|.+||.++..- ++. .+| +..||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 56677666422 111 122 346777775311 0
Q ss_pred --------------------------cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhh-hhcCCCCCCCH
Q 002817 471 --------------------------ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSG 523 (876)
Q Consensus 471 --------------------------~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T-~vGe~G~~LSG 523 (876)
+.|+.||+.|.... .++.++ .+.++.+ |+.. ..+....+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~---~~~~~~------~~~L~~l--gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI---AGVHRY------LRTLVDV--GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC---HHHHHH------HHHHHHT--TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc---hHHHHH------HHHHHHc--CCCcccccCccccCCH
Confidence 12455666554321 111111 1223333 4444 56788889999
Q ss_pred HHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE------eC
Q 002817 524 GQKQRIAISRAIVKNP---SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QG 593 (876)
Q Consensus 524 GQkQRIaiARAl~~~p---~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~ 593 (876)
|||||++|||||+++| +||||||||++||..+.+.+.+.|+++. +|+|+|+|||+++.++.||+|++| ++
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999998864 589999999999999999999999 69
Q ss_pred CeEEEecChhHHhcCCCchHH
Q 002817 594 RKIVKTGSHEELISNPNSAYA 614 (876)
Q Consensus 594 G~Ive~Gt~~eL~~~~~g~y~ 614 (876)
|+|++.|+++++.+. ...|.
T Consensus 947 G~Iv~~G~~~el~~~-~~~~t 966 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAV-PASYT 966 (993)
T ss_dssp SEEEEEECHHHHHHC-TTCHH
T ss_pred CEEEEecCHHHHHhC-CHHHH
Confidence 999999999999876 33343
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=3.6e-28 Score=267.27 Aligned_cols=194 Identities=19% Similarity=0.232 Sum_probs=145.4
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHcC------------------------------------------------
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERF------------------------------------------------ 433 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~------------------------------------------------ 433 (876)
++++++.+| +++|+||+|||||||+.+|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578888999 9999999999999999999833
Q ss_pred --CCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc-cccHHHHHHcCCC---------------CCCHHHHHHHHH
Q 002817 434 --YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKD---------------DATMEEITRAAK 495 (876)
Q Consensus 434 --~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TIreNI~~g~~---------------~~~~~~v~~a~~ 495 (876)
+.+.+|.+.+||.+++.-+...++..+++.+|+..++ .|+|.+|+..+.. ..+++++.+.+.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2445689999999987666777888899999988765 8999999876421 112233443322
Q ss_pred HHhh-------------hhhHhcCchhhhhhhcC------CCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCC
Q 002817 496 LSEA-------------MSFISNLPERFETQVGE------RGIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALD 552 (876)
Q Consensus 496 ~a~~-------------~~~i~~lp~G~~T~vGe------~G~~LSGGQkQRIaiARAl~----~~p~IllLDE~tSaLD 552 (876)
..-. .+....++.|+++.+++ ...+||||||||++||||+. ++|++||||||||+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 1100 00112356677765542 34689999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEE--EEEeCCeE
Q 002817 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVI--AVVQGRKI 596 (876)
Q Consensus 553 ~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~I--ivl~~G~I 596 (876)
+...+.+.+.|+++.+++|+|+|||+...+..||++ ++|++|+.
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 999999999998887788999999999888889987 88888854
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=6e-29 Score=255.05 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=102.2
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIre 476 (876)
..+|+|+ ++||+++|+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++||||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589985 89999999999999999999999999 99999994 333331 2234688999999998 77
Q ss_pred HH-HcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 002817 477 NI-LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (876)
Q Consensus 477 NI-~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~t 555 (876)
|+ .++.+. .+.+..... .+..+..+.. | | |||||++|||||+.+|++||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~-----------~~~~~~~l~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVE-----------PEVIPKLMEA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSC-----------TTHHHHHHHT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhcc-----------HHHHHHHHHh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 77 454210 000000000 0111122222 1 1 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCC
Q 002817 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594 (876)
Q Consensus 556 e~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G 594 (876)
.+.+.+.|+++.+++|+| |||+++.+. ++...++|
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G 170 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSG 170 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCc
Confidence 888888888875578888 999998654 34444555
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=4.4e-30 Score=266.45 Aligned_cols=165 Identities=14% Similarity=0.158 Sum_probs=123.5
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-HHHhcceEEEeccCCCc-------
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLVNQEPALF------- 470 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~-~~lr~~i~~V~Q~~~Lf------- 470 (876)
-|+|+||+|++|++++|+||||||||||+++|.|++ | |+|.+ |.++...+. ...|+.++|++|++.+|
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 599999999999999999999999999999999999 6 99999 887755432 34678899999987555
Q ss_pred ----cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHH-----HHHHccCCCE
Q 002817 471 ----ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI-----SRAIVKNPSI 541 (876)
Q Consensus 471 ----~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIai-----ARAl~~~p~I 541 (876)
++++++| .+|.+ .+++.++++... ...++ .+||||||||++| ||+++++|++
T Consensus 88 ~~l~~~~~~~~-~~g~~---~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGTL---KSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp CEEEEEEETTE-EEEEE---HHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred chhhhhhcccc-cCCCc---HHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 3455555 45543 344444443221 11121 6899999999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
++|||||+++|.+++..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988877777 788 688999998764
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=1.9e-26 Score=229.77 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=107.8
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCC--CccccHHHHHH
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA--LFATTIRENIL 479 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~--Lf~~TIreNI~ 479 (876)
|+||++++||+++|+||||||||||++++.+-++ .+ +.+.+| ++++|++. .++++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653221 12 233344 67788763 23333333321
Q ss_pred cCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH---
Q 002817 480 YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE--- 556 (876)
Q Consensus 480 ~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te--- 556 (876)
..++ ..+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ------------~~~~--------~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 ------------YIVS--------KRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ------------HHHH--------HHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ------------HHHH--------HHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1111 11233555544433 45699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEE
Q 002817 557 -------------NSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (876)
Q Consensus 557 -------------~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~I 588 (876)
+.+.+.|+++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 67777766542 489999999999999887765
No 71
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=1.5e-24 Score=241.86 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=76.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEE
Q 002817 516 ERGIQLSGGQKQRIAISRAIV------KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI 588 (876)
Q Consensus 516 e~G~~LSGGQkQRIaiARAl~------~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~I 588 (876)
....+||||||||++||||+. .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345689999999999999999 7999999999999999999999999998874 579999999999998889999
Q ss_pred EEEeCCeEEE
Q 002817 589 AVVQGRKIVK 598 (876)
Q Consensus 589 ivl~~G~Ive 598 (876)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=2.4e-26 Score=230.10 Aligned_cols=147 Identities=13% Similarity=0.183 Sum_probs=110.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~ 491 (876)
.++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+ ++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999995 567787664443225678999999987 333333 1110
Q ss_pred HHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 002817 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA-----IVKNPSILLLDE--ATSALDAESENSVQEALD 564 (876)
Q Consensus 492 ~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA-----l~~~p~IllLDE--~tSaLD~~te~~i~~~l~ 564 (876)
. ++ .+..++..+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+.++
T Consensus 63 ---------~----~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 ---------F----FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ---------T----CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred ---------c----CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 01 1135677788999999999999996 999999999999 999999999999998887
Q ss_pred HhcCCCeEEEEcC---Cchhhhh-cCEEEEEeCCeEEE
Q 002817 565 RVMVGRTTVVVAH---RLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 565 ~~~~~~T~I~ItH---rls~i~~-aD~Iivl~~G~Ive 598 (876)
+ .+.|+|+++| +...+.. ||+ .+|+|++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677999996 6666655 676 5677776
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.91 E-value=3.3e-27 Score=259.48 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=119.8
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEE
Q 002817 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (876)
Q Consensus 384 ~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V 463 (876)
|+||+| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+|++++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 677777 6 248999999999999999999999999999999999999999999999975 34444456677766
Q ss_pred eccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 002817 464 NQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543 (876)
Q Consensus 464 ~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~Ill 543 (876)
+| |||+||++|||||.++||+++
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 41 899999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCC-eEEEEcCCchhhhhcCEEEEEeCCeE
Q 002817 544 LDEATSALDAESENSVQEALDRVMVGR-TTVVVAHRLSTIRNADVIAVVQGRKI 596 (876)
Q Consensus 544 LDE~tSaLD~~te~~i~~~l~~~~~~~-T~I~ItHrls~i~~aD~Iivl~~G~I 596 (876)
|||||++ .+.+.|+.+..++ |+|+++|+++....||||++|++|+.
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999992 2445666655565 79999999999899999999998853
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=1.1e-26 Score=264.03 Aligned_cols=195 Identities=15% Similarity=0.167 Sum_probs=159.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCe---eCCCCC----
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN---NIKGLD---- 452 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~---di~~~~---- 452 (876)
..++++|+++.|+. ...+|+++ |+|++||+++|+||||||||||+++|.|+++|++|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 24699999 999999999999999999999999999999999999999998 565432
Q ss_pred -HHHHhcceEEEecc--CCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 453 -LKWLRQQIGLVNQE--PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 453 -~~~lr~~i~~V~Q~--~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
...+++.|+||+|+ +...+-|+.+|+.+.. +.... +......++ +...+||||| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~v~~~l------------d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQHVLLIM------------DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCEEEEEE------------ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCCHHHHH------------HhHHHHHHHH-HHH
Confidence 45689999999995 3445679999998742 11111 001111121 2245799999 999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----CC-----eEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-----GR-----TTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 530 aiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-----~~-----T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
+|| +.+|++ |++||+.+...+.+.++++.+ |+ |++++||+++ ...||++++|.+|+|+..
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988754 53 9999999999 788999999999999999
Q ss_pred cChhHHhc
Q 002817 600 GSHEELIS 607 (876)
Q Consensus 600 Gt~~eL~~ 607 (876)
|+++++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99988754
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=7.9e-26 Score=253.73 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=131.2
Q ss_pred CccccceeEEecCCC--------------------EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH
Q 002817 397 VAIFDKFCLDIPAGK--------------------IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 397 ~~vL~~isl~i~~G~--------------------~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l 456 (876)
..+|+|+||++++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH--HHHHHHHHHH
Q 002817 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG--QKQRIAISRA 534 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG--QkQRIaiARA 534 (876)
| .++++|++...+-|++||+.++.+... +.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~~---~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNFP---PDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSCC---HHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHHH---HHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 2 288999986557899999988765433 344444444322 12222 2 8999 9999999999
Q ss_pred Hcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------C----CCeEEEEcCCchh--hhh-cCEE
Q 002817 535 IVK----------NPSILLLDEATSALDAESENSVQEALDRVM------V----GRTTVVVAHRLST--IRN-ADVI 588 (876)
Q Consensus 535 l~~----------~p~IllLDE~tSaLD~~te~~i~~~l~~~~------~----~~T~I~ItHrls~--i~~-aD~I 588 (876)
+.+ +||+++|||||++||+.+++.+.+.|+++. . .+++++.||.++. ++. +|+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999988888877652 1 2567778998875 544 6665
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=4.2e-23 Score=249.29 Aligned_cols=95 Identities=28% Similarity=0.423 Sum_probs=87.3
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEE
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNPS--ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p~--IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 590 (876)
.+..-.+|||||||||+|||||.++|+ +|||||||++||++..+.+.+.|+++. .|.|+|+|+||+..++.||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 455567999999999999999999994 999999999999999999999888764 48999999999999999999999
Q ss_pred E------eCCeEEEecChhHHhcC
Q 002817 591 V------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 591 l------~~G~Ive~Gt~~eL~~~ 608 (876)
| ++|+++..|+++++.+.
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGC
T ss_pred eCCCcccCCCEEEEecCHHHHHhc
Confidence 9 79999999999999875
No 77
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.87 E-value=4.6e-26 Score=242.08 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=146.4
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCeeCCCCCHHHHhcceEEEec-----cCCCcc
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-SGEILLDGNNIKGLDLKWLRQQIGLVNQ-----EPALFA 471 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~-~G~I~idG~di~~~~~~~lr~~i~~V~Q-----~~~Lf~ 471 (876)
++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 3899999 9999999999999999999999999999998 999999999886553 455788899 667788
Q ss_pred ccHHHHHHcCCCCC-------CHHHHHHHHHHHhhh-----------------hhH------------hcCchhhhhhhc
Q 002817 472 TTIRENILYGKDDA-------TMEEITRAAKLSEAM-----------------SFI------------SNLPERFETQVG 515 (876)
Q Consensus 472 ~TIreNI~~g~~~~-------~~~~v~~a~~~a~~~-----------------~~i------------~~lp~G~~T~vG 515 (876)
.+|+.+++.. |+. +.+.+.++++.+... ..+ ..+|+++++.|+
T Consensus 89 ~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 8999999884 443 566666665544311 111 135689999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhcCCCeEEEEcCCch
Q 002817 516 ERGIQLSGGQKQRIAISRAIVKNPSI--LLLDEATSALDAES---------ENSVQEALDRVMVGRTTVVVAHRLS 580 (876)
Q Consensus 516 e~G~~LSGGQkQRIaiARAl~~~p~I--llLDE~tSaLD~~t---------e~~i~~~l~~~~~~~T~I~ItHrls 580 (876)
+++..+||| ||+++||+++.||+| +|+||+||++|... +..++++++...+|+|++.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 999999999999999 99999999999873 4567999999999999999999987
No 78
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.87 E-value=3.1e-25 Score=220.02 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=89.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCeeCCCCC---HHHHh-cceE----EEeccCCCccccHHHHHH
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLD---LKWLR-QQIG----LVNQEPALFATTIRENIL 479 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~---~G~I~idG~di~~~~---~~~lr-~~i~----~V~Q~~~Lf~~TIreNI~ 479 (876)
++++|||+||||||||+++|.|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 78888 5788 899999988 222
Q ss_pred cCCCCCCHHHHHHHHHHHhhhhhHhc-CchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 002817 480 YGKDDATMEEITRAAKLSEAMSFISN-LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (876)
Q Consensus 480 ~g~~~~~~~~v~~a~~~a~~~~~i~~-lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~Il 542 (876)
+ . +++ .+++++++.. || ||||.|||+ |||||||||+||||++++|+|+
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 6789999999 99 999999995 9999999999999999999874
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=2.8e-25 Score=241.93 Aligned_cols=142 Identities=17% Similarity=0.248 Sum_probs=113.8
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEE-----------------------ecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLD-----------------------IPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 377 ~~~~~I~~~~vsf~y~~~~~~~vL~~isl~-----------------------i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
..++.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|.|+
T Consensus 39 ~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4456799999999994 467777765 899999999999999999999999999
Q ss_pred CCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcC----CCCC-CHHHHHHHHHHHhhhhhHhcCch
Q 002817 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG----KDDA-TMEEITRAAKLSEAMSFISNLPE 508 (876)
Q Consensus 434 ~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g----~~~~-~~~~v~~a~~~a~~~~~i~~lp~ 508 (876)
++|..|. +++++|+|+++++..|++||+.+. .|+. ..+.+.+ +++.+..
T Consensus 114 l~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~---------~L~~l~~ 167 (312)
T 3aez_A 114 LARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMR---------FVTSVKS 167 (312)
T ss_dssp HHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHH---------HHHHHHT
T ss_pred ccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHH---------HHHHhCC
Confidence 9998664 369999999999988999999753 2221 2223333 3333333
Q ss_pred hhh-hhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 002817 509 RFE-TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (876)
Q Consensus 509 G~~-T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~ 553 (876)
|+. ..+ ..||||||||+++|||++.+|+|+|||||++.+|+
T Consensus 168 ~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 168 GSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 432 333 47999999999999999999999999999999986
No 80
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.86 E-value=2.1e-25 Score=249.21 Aligned_cols=175 Identities=20% Similarity=0.258 Sum_probs=148.0
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCeeCCCCCHHHHhcceEEEec-----cCCCcc
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-SGEILLDGNNIKGLDLKWLRQQIGLVNQ-----EPALFA 471 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~-~G~I~idG~di~~~~~~~lr~~i~~V~Q-----~~~Lf~ 471 (876)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3567765 8999999999999999999999999999998 899988776664 2 46788999999 899999
Q ss_pred ccHHHHHHcCCCCC-------CHHHHHHHHHHHhhhh-----------------hH------------hcCchhhhhhhc
Q 002817 472 TTIRENILYGKDDA-------TMEEITRAAKLSEAMS-----------------FI------------SNLPERFETQVG 515 (876)
Q Consensus 472 ~TIreNI~~g~~~~-------~~~~v~~a~~~a~~~~-----------------~i------------~~lp~G~~T~vG 515 (876)
++|++|+++. |+. +.+.+..+++.++... .+ ..+|+++++.|+
T Consensus 200 ~~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 9999999984 554 6777777777765321 11 125788999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhcCCCeEEEEcCCchh
Q 002817 516 ERGIQLSGGQKQRIAISRAIVKNPSI--LLLDEATSALDAE----S-----ENSVQEALDRVMVGRTTVVVAHRLST 581 (876)
Q Consensus 516 e~G~~LSGGQkQRIaiARAl~~~p~I--llLDE~tSaLD~~----t-----e~~i~~~l~~~~~~~T~I~ItHrls~ 581 (876)
+++..+||| ||+++||+++.+|+| +|+||+||++|.. + +..++++++...+|+|++.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999975 3 44678899888999999999999984
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=1.3e-21 Score=216.22 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEE
Q 002817 520 QLSGGQKQRIAISRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAV 590 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~---------~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iiv 590 (876)
.||||||||++|||+|. .+|+|||||||||+||+...+.+.+.|.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998763 79999999 554 8999999
Q ss_pred EeCCeEEEecChhHHh
Q 002817 591 VQGRKIVKTGSHEELI 606 (876)
Q Consensus 591 l~~G~Ive~Gt~~eL~ 606 (876)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 82
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=1.6e-23 Score=223.53 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=95.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cHHHHHHcCCCC---CCH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDD---ATM 487 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~~~---~~~ 487 (876)
.+|||||||||||||+++|.|++.|++|+|.++|.++.. ...++.++|++|++.++.. ||.||+.||... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 3456789999999988755 999999999732 222
Q ss_pred HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 002817 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567 (876)
Q Consensus 488 ~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~ 567 (876)
+.+.+... .++...+ . ..||||||||+++|||+.. +|+|||||++||+... .+.+.+ .
T Consensus 81 ~~i~~~~~----~~~~~~~-------~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L---~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFL-------K----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHL---S 138 (270)
T ss_dssp HHHHHHHH----HHHHHHH-------H----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHH---H
T ss_pred HHHHHHHH----HHHHhhh-------H----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHH---H
Confidence 33333332 2222222 2 2699999999999999876 9999999999999863 233333 3
Q ss_pred CCCeEEEEcCCchhh
Q 002817 568 VGRTTVVVAHRLSTI 582 (876)
Q Consensus 568 ~~~T~I~ItHrls~i 582 (876)
+..++|+|.|+..++
T Consensus 139 ~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 139 KVVNIIPVIAKADTM 153 (270)
T ss_dssp TTSEEEEEETTGGGS
T ss_pred hcCcEEEEEeccccC
Confidence 348999999987765
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=3.5e-23 Score=224.31 Aligned_cols=173 Identities=16% Similarity=0.257 Sum_probs=128.1
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC----HHHH--hcceEEEeccCC-Cc-cc
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWL--RQQIGLVNQEPA-LF-AT 472 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~----~~~l--r~~i~~V~Q~~~-Lf-~~ 472 (876)
+++||++++|+.++||||+||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4688999999999999999999999999999999999999999999886653 2334 457999999987 65 45
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhc--CchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCC
Q 002817 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISN--LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS--ILLLDEAT 548 (876)
Q Consensus 473 TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~--lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~--IllLDE~t 548 (876)
|++||+.++..... +...++. +.+-.+..++ .|| |||++||||+..+|+ +|+|| ||
T Consensus 171 ~v~e~l~~~~~~~~------------d~~lldt~gl~~~~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 171 VLSKAVKRGKEEGY------------DVVLCDTSGRLHTNYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHHTTC------------SEEEECCCCCSSCCHHHHH----HHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHHcCC------------cchHHhcCCCCcchhHHHH----HHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 99999987531100 0111221 1111233333 378 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEcC---------Cchhhh-hcCEEEEEeCCeEE
Q 002817 549 SALDAESENSVQEALDRVMVGRTTVVVAH---------RLSTIR-NADVIAVVQGRKIV 597 (876)
Q Consensus 549 SaLD~~te~~i~~~l~~~~~~~T~I~ItH---------rls~i~-~aD~Iivl~~G~Iv 597 (876)
+++|+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 231 sglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 231 TGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 999998653 12221 23789999999 445443 36799999999653
No 84
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.84 E-value=2.9e-24 Score=219.20 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=130.7
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcccc
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYE-------------PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~-------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~T 473 (876)
+++|++++||||||||||||+++|+|+++ |..|+ ++|.++..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999987 88898 699999999999999987 7999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH-HHccCCCEEEEeCCCCCCC
Q 002817 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR-AIVKNPSILLLDEATSALD 552 (876)
Q Consensus 474 IreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR-Al~~~p~IllLDE~tSaLD 552 (876)
+++|+ ||. +.+++.++++...+.- .+..|+|+++.... |+ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 875 5778888887643322 23468999987542 22 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 553 ~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
.++|+.|++.|.+..++ +.++| ++ ..+|+|+|+++
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 99999999999876654 45678 55 88999999875
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=3.7e-22 Score=220.14 Aligned_cols=172 Identities=16% Similarity=0.245 Sum_probs=128.6
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC----HHHH--hcceEEEeccCC-Cc-cc
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWL--RQQIGLVNQEPA-LF-AT 472 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~----~~~l--r~~i~~V~Q~~~-Lf-~~ 472 (876)
+.+||++++|+.++|||||||||||+++.|.|+++|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999886542 2333 568999999987 55 56
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhc--CchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCC
Q 002817 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISN--LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS--ILLLDEAT 548 (876)
Q Consensus 473 TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~--lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~--IllLDE~t 548 (876)
|++|||.++.....+ ...++. +.+-.+..++ .|| |||++||||+..+|+ +|+|| ||
T Consensus 228 tv~e~l~~~~~~~~d------------~~lldt~Gl~~~~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-pt 287 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD------------VVLCDTSGRLHTNYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GN 287 (359)
T ss_dssp HHHHHHHHHHHTTCS------------EEEEECCCCSSCCHHHHH----HHH---HHHHHHHHHSTTCCSEEEEEEE-GG
T ss_pred hHHHHHHHHHhCCCH------------HHHHHhcCCChhhhhHHH----HHH---HHHHHHHHHHhcCCCceEEEEc-CC
Confidence 999999875311000 011111 1111223333 377 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEcC---------Cchhhh-hcCEEEEEeCCeE
Q 002817 549 SALDAESENSVQEALDRVMVGRTTVVVAH---------RLSTIR-NADVIAVVQGRKI 596 (876)
Q Consensus 549 SaLD~~te~~i~~~l~~~~~~~T~I~ItH---------rls~i~-~aD~Iivl~~G~I 596 (876)
+++|+.+... .+.+ ..+.|.|++|| .++.+. ..+.|..+..|+.
T Consensus 288 tglD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 288 TGLNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999986532 2221 23789999999 445443 3679999999964
No 86
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.82 E-value=7.8e-23 Score=206.34 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=122.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHH
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~ 489 (876)
|++++|+||+||||||++++|.|+++ ++| |.+||.++.+++ .+++++||++|+. +++ ++|+.--
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~-------- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV-------- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC--------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc--------
Confidence 78999999999999999999999999 999 999999986554 5799999999986 443 2332110
Q ss_pred HHHHHHHHhhhhhHhcCc-hhhhhhhcCCCCCCCHHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 002817 490 ITRAAKLSEAMSFISNLP-ERFETQVGERGIQLSGGQKQRI-AISR---AIVKNPSILLLDE--ATSALDAESENSVQEA 562 (876)
Q Consensus 490 v~~a~~~a~~~~~i~~lp-~G~~T~vGe~G~~LSGGQkQRI-aiAR---Al~~~p~IllLDE--~tSaLD~~te~~i~~~ 562 (876)
.| ..+ ...+..+|+.|..+|||||+++ +++| |+.++|+|||||| ||...|....+.+.+.
T Consensus 65 -----------~~--~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 65 -----------GL--EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp -----------CC--CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred -----------cc--cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 00 001 1123478999999999999999 5666 7899999999999 8888999877777777
Q ss_pred HHHhcCCCeEEE--Ec--CCchhhhhcCEEEEEeCCeEEEec
Q 002817 563 LDRVMVGRTTVV--VA--HRLSTIRNADVIAVVQGRKIVKTG 600 (876)
Q Consensus 563 l~~~~~~~T~I~--It--Hrls~i~~aD~Iivl~~G~Ive~G 600 (876)
+++ .+|+|+ ++ ||.+ ...+|+|..+++|+|++-.
T Consensus 132 l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 653 456664 44 9886 5678888899999999853
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=8.1e-23 Score=210.05 Aligned_cols=175 Identities=16% Similarity=0.145 Sum_probs=108.7
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cHH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIr 475 (876)
.++++| .+|++||+++|+||||||||||+++|.|+++. |.+++.....-.....|+.++|++|++.+|.. |++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468899 79999999999999999999999999999963 44443221111112346789999999987753 666
Q ss_pred HHHHc-----C--C-CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH---HHccCCCEEEE
Q 002817 476 ENILY-----G--K-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR---AIVKNPSILLL 544 (876)
Q Consensus 476 eNI~~-----g--~-~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR---Al~~~p~IllL 544 (876)
+|+.. + . -....+++.+.++... +.+. ...+.|.+.++-..++ |++.+|++++|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~--~~~~-------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~L 147 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGV--PVLI-------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDL 147 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTC--CEEE-------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCC--eEEE-------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHH
Confidence 66531 1 0 0112333333222110 0000 0122333333333333 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEe
Q 002817 545 DEATSAL----DAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ 592 (876)
Q Consensus 545 DE~tSaL----D~~te~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~ 592 (876)
||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999998 6778888888887764 47899999999998765 99999985
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.81 E-value=1.9e-21 Score=214.57 Aligned_cols=194 Identities=15% Similarity=0.176 Sum_probs=146.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC-------CCH
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-------LDL 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~-------~~~ 453 (876)
.++.+|+++.|+. ...+|+++ |+|.+||+++|+||+|||||||+++|.|+.+|+.|.|.+.|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 5788999999963 34689999 9999999999999999999999999999999999999999975222 223
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhh-cCCCCCCCHHHHHHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQLSGGQKQRIAIS 532 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~v-Ge~G~~LSGGQkQRIaiA 532 (876)
..+++.+.+++|... + ..+++..+.......++... .|.+..+ -+.-.+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 345666777776421 1 12333333333333333221 1222110 12346899999 999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEcCCchhhhhcCEEEEEeCCeEEEecChhH
Q 002817 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM---VGR-----TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 533 RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~---~~~-----T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 604 (876)
+.+|++ |+++|+.....+.+.++++. +|. |++++||+++ -.-||++++|.+|+|+..|+.+|
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 689987 99999999999999998875 366 8999999999 56699999999999999999887
Q ss_pred Hh
Q 002817 605 LI 606 (876)
Q Consensus 605 L~ 606 (876)
+.
T Consensus 253 ~~ 254 (347)
T 2obl_A 253 EN 254 (347)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=1e-20 Score=230.27 Aligned_cols=160 Identities=27% Similarity=0.435 Sum_probs=117.8
Q ss_pred HHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC------CC-CCHHHHHHHHHHHhhhh
Q 002817 429 LIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK------DD-ATMEEITRAAKLSEAMS 501 (876)
Q Consensus 429 lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~------~~-~~~~~v~~a~~~a~~~~ 501 (876)
+.-+-+.|..|+|.++|.+|.++.. .|+.||+.|.. .+ ....++.+.. ....+
T Consensus 387 C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 446 (916)
T 3pih_A 387 CGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEI--EKRLE 446 (916)
T ss_dssp TCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHH--HHHHH
T ss_pred cccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHH--HHHHH
Confidence 3345678999999999998755333 34455544321 01 1111111111 11123
Q ss_pred hHhcCchhhhhh-hcCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcC
Q 002817 502 FISNLPERFETQ-VGERGIQLSGGQKQRIAISRAIVKNPS--ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577 (876)
Q Consensus 502 ~i~~lp~G~~T~-vGe~G~~LSGGQkQRIaiARAl~~~p~--IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItH 577 (876)
++..+ |++.. ......+||||||||++|||||.++|+ +|||||||++||++..+.+.+.|+++. +|+|+|+|+|
T Consensus 447 ~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 447 FLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34333 33322 345567899999999999999999887 999999999999999999999998875 4899999999
Q ss_pred CchhhhhcCEEEEE------eCCeEEEecChhHHhcCCC
Q 002817 578 RLSTIRNADVIAVV------QGRKIVKTGSHEELISNPN 610 (876)
Q Consensus 578 rls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~~~ 610 (876)
+++.+..||+|++| ++|+|+++|+++|+++.+.
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 99999999999999 9999999999999987633
No 90
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.79 E-value=2.1e-23 Score=232.29 Aligned_cols=223 Identities=10% Similarity=-0.044 Sum_probs=151.3
Q ss_pred HHHHHHHHh-cccCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCCCCcccE-
Q 002817 305 WYVSVVVHK-HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHI- 382 (876)
Q Consensus 305 ~~g~~~~~~-~~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~I- 382 (876)
++|.+.... +.+|.+.+..++.+......+ .+....+.+..+..+.+|+..++ +|................+.+
T Consensus 53 ~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~it 128 (361)
T 2gza_A 53 RASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRT 128 (361)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCC
T ss_pred ECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCC
Confidence 345554444 678999887765544332222 12111222233334556777776 222111000000000112345
Q ss_pred --------EEEeEEEE---CCCCCCCccc---------cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 002817 383 --------EFKDVSFC---YPSRPDVAIF---------DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (876)
Q Consensus 383 --------~~~~vsf~---y~~~~~~~vL---------~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~ 442 (876)
+|+||+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.
T Consensus 129 l~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 129 LEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 89999999 9632 23455 999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhcceEEEe-ccCCC---ccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC
Q 002817 443 LDGNNIKGLDLKWLRQQIGLVN-QEPAL---FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (876)
Q Consensus 443 idG~di~~~~~~~lr~~i~~V~-Q~~~L---f~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G 518 (876)
++|. .++....+|++++|++ |++.+ +..|+++||.++.....+..+..+++.+.++++++.+|.|++|.+++-+
T Consensus 208 ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H 285 (361)
T 2gza_A 208 IEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCH 285 (361)
T ss_dssp EESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEE
T ss_pred ECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEEC
Confidence 9985 5666667889999999 99886 8899999999886544444444455556778889999999999999998
Q ss_pred CCCCHHHHHHHHHHHH
Q 002817 519 IQLSGGQKQRIAISRA 534 (876)
Q Consensus 519 ~~LSGGQkQRIaiARA 534 (876)
.+-..+..+|+.....
T Consensus 286 ~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 286 AGSCELTFERLALMVL 301 (361)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8889999999987764
No 91
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.78 E-value=1.9e-21 Score=217.46 Aligned_cols=148 Identities=18% Similarity=0.301 Sum_probs=100.6
Q ss_pred cccceeEEecC--CCEEEEEcCCCccHHHHHHHHHcCCCCCc----cEEEE----CCeeCCCCCHHHHhcceEEEeccCC
Q 002817 399 IFDKFCLDIPA--GKIVALVGGSGSGKSTVISLIERFYEPLS----GEILL----DGNNIKGLDLKWLRQQIGLVNQEPA 468 (876)
Q Consensus 399 vL~~isl~i~~--G~~vaiVG~sGsGKSTll~lL~~~~~p~~----G~I~i----dG~di~~~~~~~lr~~i~~V~Q~~~ 468 (876)
+.+.|+++|++ |++++||||||||||||+++|.|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35689999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred CccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchh--hhh--------hhcCCCCCCCHHHHHHHHHHHHH---
Q 002817 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER--FET--------QVGERGIQLSGGQKQRIAISRAI--- 535 (876)
Q Consensus 469 Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G--~~T--------~vGe~G~~LSGGQkQRIaiARAl--- 535 (876)
+|++|++|||.++..+.....+...+...+...++..++.+ ++. +..++|.++||||+||++++|++
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999986544344443333333333344444433 222 22245566666666666666666
Q ss_pred cc--CCCEEEEeCCC
Q 002817 536 VK--NPSILLLDEAT 548 (876)
Q Consensus 536 ~~--~p~IllLDE~t 548 (876)
++ +++|+++|||+
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 55 66666666664
No 92
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.78 E-value=4.8e-19 Score=206.96 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=71.9
Q ss_pred CCC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCe
Q 002817 519 IQL-SGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (876)
Q Consensus 519 ~~L-SGGQkQRIaiARAl~~~p--~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~ 595 (876)
.+| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999988877999999999999999999999996653
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.77 E-value=2.2e-21 Score=199.78 Aligned_cols=144 Identities=15% Similarity=0.213 Sum_probs=114.4
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc---cHHHHHHcC--
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT---TIRENILYG-- 481 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~---TIreNI~~g-- 481 (876)
.++|+++||+||+|||||||+++|.|++.| +++||+|++++++. |+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 49999999998843 677776553
Q ss_pred CC-CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC-------CCH
Q 002817 482 KD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA-------LDA 553 (876)
Q Consensus 482 ~~-~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSa-------LD~ 553 (876)
.+ ....+.+.++++..+..+++.. | ++++..|+++. |+||+++||+++.+|+++++||||++ ||+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 33 2345677888877777666544 4 45555554432 57899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHh--cCCCeEEEEcCCc
Q 002817 554 ESENSVQEALDRV--MVGRTTVVVAHRL 579 (876)
Q Consensus 554 ~te~~i~~~l~~~--~~~~T~I~ItHrl 579 (876)
..+..+.+.+.+. .+|+|++.++|+.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999998888764 3589999999984
No 94
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=3.3e-19 Score=193.49 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=122.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHH
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G-~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIre 476 (876)
++|+++++.+++|++++|+||+|||||||++.|.+...|++| .|.+.+.+ .+.+.+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999988 77654433 3566777776665554422 2334
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH-HHHHHHHHHHccCCCEEEEeCCCC---C--
Q 002817 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ-KQRIAISRAIVKNPSILLLDEATS---A-- 550 (876)
Q Consensus 477 NI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ-kQRIaiARAl~~~p~IllLDE~tS---a-- 550 (876)
|+..+. .+.++..++++ +.+...+-+ +.+...++|.+| +||+. |+|+..+|+++||||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 554432 11222222221 112222212 223334689999 78887 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHhc--CCCeEEEEcCCc--h--------------------hhh-hcCEEEEEeCCeE
Q 002817 551 -LDA-ESENSVQEALDRVM--VGRTTVVVAHRL--S--------------------TIR-NADVIAVVQGRKI 596 (876)
Q Consensus 551 -LD~-~te~~i~~~l~~~~--~~~T~I~ItHrl--s--------------------~i~-~aD~Iivl~~G~I 596 (876)
+|. .....+.+.|+++. .+.|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 44456777777664 389999999995 3 444 5999999999875
No 95
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.77 E-value=3.8e-18 Score=188.67 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=67.8
Q ss_pred CCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEE
Q 002817 518 GIQLSGGQKQ------RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAV 590 (876)
Q Consensus 518 G~~LSGGQkQ------RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iiv 590 (876)
...||||||| |+++|||+..+|++|||||||++||+.....+.+.|+++. +++|+|+|||+......||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998764 57899999999888888999999
Q ss_pred Ee
Q 002817 591 VQ 592 (876)
Q Consensus 591 l~ 592 (876)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 96
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=9.9e-19 Score=216.70 Aligned_cols=171 Identities=16% Similarity=0.130 Sum_probs=122.7
Q ss_pred ccEEEEe-----EEEECCCCCCCccccceeEEecC-------CCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCee
Q 002817 380 GHIEFKD-----VSFCYPSRPDVAIFDKFCLDIPA-------GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN 447 (876)
Q Consensus 380 ~~I~~~~-----vsf~y~~~~~~~vL~~isl~i~~-------G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~d 447 (876)
+.|+++| +++.|+. +..+++|++|++++ |+.++|+||+||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999953 34699999999988 999999999999999999999 99864
Q ss_pred CCCCCHHHHhcceE-EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHH
Q 002817 448 IKGLDLKWLRQQIG-LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (876)
Q Consensus 448 i~~~~~~~lr~~i~-~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQk 526 (876)
+.++| ||||++. .-|+.|||.. +- ++.+.+. .| -.++|+|++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-ri--------------g~~d~~~---~~--------~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-RL--------------GASDRIM---SG--------ESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-EC--------------C--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-Hc--------------CCHHHHh---hc--------hhhhHHHHH
Confidence 34576 9999973 6678787742 10 1111111 12 235677776
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhc-C-CCeEEEEcCCchhhhh-cCEEEEEeCCeEE--Eec
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESE-NSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV--KTG 600 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te-~~i~~~l~~~~-~-~~T~I~ItHrls~i~~-aD~Iivl~~G~Iv--e~G 600 (876)
+ +++||++..+|+++||||||+++|+... ..+.+.|+.+. + ++|+|++||.++.+.. +|++.|+ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 9999999999999999999999999875 44577777664 3 7899999999998765 8998886 58887 555
Q ss_pred Chh
Q 002817 601 SHE 603 (876)
Q Consensus 601 t~~ 603 (876)
+.+
T Consensus 936 ~~~ 938 (1022)
T 2o8b_B 936 ECE 938 (1022)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=1.2e-20 Score=220.96 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=118.7
Q ss_pred CccccceeE-EecCCCEEEEEcCCCccHHHHHHH--HHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcccc
Q 002817 397 VAIFDKFCL-DIPAGKIVALVGGSGSGKSTVISL--IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473 (876)
Q Consensus 397 ~~vL~~isl-~i~~G~~vaiVG~sGsGKSTll~l--L~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~T 473 (876)
.++|+|+|| .+++|++++|+||||||||||++. +.|+++|.+|.|+++|.+. ..+....++++||++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 468999999 999999999999999999999999 6799999999999999873 223445677899999987521
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC---
Q 002817 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA--- 550 (876)
Q Consensus 474 IreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSa--- 550 (876)
+|+.+-..... ++..++++..++.++.... ...|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----------~~~LS~g-------------~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 --GKLFILDASPD-PEGQEVVGGFDLSALIERI-----------NYAIQKY-------------RARRVSIDSVTSVFQQ 153 (525)
T ss_dssp --TSEEEEECCCC-SSCCSCCSSHHHHHHHHHH-----------HHHHHHH-------------TCSEEEEECSTTTSTT
T ss_pred --CcEEEEecCcc-cchhhhhcccCHHHHHHHH-----------HHHHHHc-------------CCCEEEECCHHHHHHh
Confidence 12221110000 0000111111111111111 1234555 5789999999985
Q ss_pred --CCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhh---------hh-cCEEEEEeCCe
Q 002817 551 --LDAESENSVQEALDRVM-VGRTTVVVAHRLSTI---------RN-ADVIAVVQGRK 595 (876)
Q Consensus 551 --LD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i---------~~-aD~Iivl~~G~ 595 (876)
+|+...+.+.+.++.+. .|+|+|+|||+++.+ .. ||+|++|++|+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58888888888887763 489999999999974 45 99999999954
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=1.2e-18 Score=210.40 Aligned_cols=152 Identities=24% Similarity=0.396 Sum_probs=114.7
Q ss_pred CCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCC-CCCHHH------H-HHHHHHHhhhhhHhc
Q 002817 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEE------I-TRAAKLSEAMSFISN 505 (876)
Q Consensus 434 ~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~-~~~~~~------v-~~a~~~a~~~~~i~~ 505 (876)
+.|....|.++|.+|.+ +...||.|++.|... ..+.++ + .+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 46778889999976532 456788999888531 122211 1 1111111 12222
Q ss_pred Cchhhhhh-hcCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchh
Q 002817 506 LPERFETQ-VGERGIQLSGGQKQRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLST 581 (876)
Q Consensus 506 lp~G~~T~-vGe~G~~LSGGQkQRIaiARAl~~~p--~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~ 581 (876)
+ |++.. ....-.+|||||||||+||+||..+| ++|||||||++||++..+.+.+.|+++. .|.|+|+|+|++..
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 1 33321 34445699999999999999999985 9999999999999999889998988875 58999999999999
Q ss_pred hhhcCEEEEE------eCCeEEEecChhHHhcC
Q 002817 582 IRNADVIAVV------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 582 i~~aD~Iivl------~~G~Ive~Gt~~eL~~~ 608 (876)
++.||+|++| ++|+|+.+|+++++.+.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999 79999999999999874
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.74 E-value=5.8e-20 Score=193.82 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=107.0
Q ss_pred CCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHH
Q 002817 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (876)
Q Consensus 396 ~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIr 475 (876)
+.++|+|+||++++|+++||+||+||||||++++|.|++ |.+.++ ..++.++|++|+++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456899999999999999999999999999999999977 555554 367889999999744456999
Q ss_pred HHHHcCCC-------C-CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 002817 476 ENILYGKD-------D-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547 (876)
Q Consensus 476 eNI~~g~~-------~-~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~ 547 (876)
+|+.+... + ...+++.+.++ .+.++.+..+ ..||+||+||+++ |++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLK---------NIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHH---------HHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHH---------HHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 99875321 1 12222333222 1223333333 4799999999998 688999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCch-hhhh-cCEEEEEeCCeEEEecChhHHhc
Q 002817 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 548 tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls-~i~~-aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
....|.. +.++ .+.|++++||... ..+. ++.+ ++|+ +.+++.+
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8887764 2222 3789999999743 3333 3334 6664 5666653
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=1.7e-18 Score=202.78 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=115.7
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHH-cCC
Q 002817 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL-YGK 482 (876)
Q Consensus 404 sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~-~g~ 482 (876)
+..+++|+.++|+||+|||||||++.+++...|. |+ +.+.+++|++. .++++|.. +|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcCC
Confidence 4489999999999999999999999999998884 43 02567778762 35666653 332
Q ss_pred CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHH
Q 002817 483 DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE-----SEN 557 (876)
Q Consensus 483 ~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~-----te~ 557 (876)
+.+++ ... |...........|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 334 ---~~~~~----~~~-----------g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFEEM----ERQ-----------NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHHHH----HHT-----------TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHHHH----HhC-----------CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 22221 111 1111222334579999999999999999999999999 99999998 777
Q ss_pred HHHHHHHHhc-CCCeEEEEcCCc----------hhhhh-cCEEEEEeCCe
Q 002817 558 SVQEALDRVM-VGRTTVVVAHRL----------STIRN-ADVIAVVQGRK 595 (876)
Q Consensus 558 ~i~~~l~~~~-~~~T~I~ItHrl----------s~i~~-aD~Iivl~~G~ 595 (876)
.+.+.++.+. .|.|+|+|+|.. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7777776653 589999999998 66654 99999999987
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=4.5e-18 Score=164.13 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=75.8
Q ss_pred hhhhhh-----cCCCCCCCHHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 002817 509 RFETQV-----GERGIQLSGGQKQRIAIS------RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVA 576 (876)
Q Consensus 509 G~~T~v-----Ge~G~~LSGGQkQRIaiA------RAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~It 576 (876)
+|++.+ .....+||||||||++|| ||++.+|+++||||||++||+++.+.+.+.|.++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 666665 234578999999999876 99999999999999999999999999999998874 479999999
Q ss_pred CCchhhhhcCEEEEE--eCCeE
Q 002817 577 HRLSTIRNADVIAVV--QGRKI 596 (876)
Q Consensus 577 Hrls~i~~aD~Iivl--~~G~I 596 (876)
|++.....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999777779999999 45643
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.73 E-value=2.2e-19 Score=198.79 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=121.8
Q ss_pred cccce-eEEecCCCEEEEEcCCCccHHHHHHHHHcCC--CCCc----cE-EEECCeeCCCCCHHHHhcceEEEeccCCCc
Q 002817 399 IFDKF-CLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLS----GE-ILLDGNNIKGLDLKWLRQQIGLVNQEPALF 470 (876)
Q Consensus 399 vL~~i-sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~--~p~~----G~-I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf 470 (876)
.|+++ ++.+++|++++|+||+|||||||++.+++.+ +|++ |+ |++|+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6776 67 999997651 256789999999999
Q ss_pred cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc-------cCCCEEE
Q 002817 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV-------KNPSILL 543 (876)
Q Consensus 471 ~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~-------~~p~Ill 543 (876)
..++.|||.+.... + |++|+|++.+||+++ .+|+++|
T Consensus 193 ~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 88999999876421 1 356788888888888 6899999
Q ss_pred EeCCCCCCCHHH-------H-----HHHHHHHHHhc--CCCeEEEEcCCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 544 LDEATSALDAES-------E-----NSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 544 LDE~tSaLD~~t-------e-----~~i~~~l~~~~--~~~T~I~ItHrls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
+||||+.+|++. + +.+...|.++. .+.|+|+++|....... .+.+.+..+|++++.+.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 1 22333344433 38899999998775432 3456788889999998887764
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.72 E-value=6e-18 Score=193.30 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEcCCchhhhhcCEEEEEe
Q 002817 520 QLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQ 592 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~----~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrls~i~~aD~Iivl~ 592 (876)
.||||||||++|||++. ++||+||||||||+||+.....+.+.|.+..+ +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 689999999998888999999986
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.72 E-value=2.7e-17 Score=199.49 Aligned_cols=136 Identities=26% Similarity=0.405 Sum_probs=104.6
Q ss_pred CCccccHHHHHHcCCC-CCCHHH------H-HHHHHHHhhhhhHhcCchhhhhh-hcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 468 ALFATTIRENILYGKD-DATMEE------I-TRAAKLSEAMSFISNLPERFETQ-VGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 468 ~Lf~~TIreNI~~g~~-~~~~~~------v-~~a~~~a~~~~~i~~lp~G~~T~-vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
.+++.||.|++.|... ..+.++ + .+..+.. +++..+ |++.. ....-.+|||||||||+||+||..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 4677899999998542 122311 1 1111111 222222 33322 3455679999999999999999998
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcCCchhhhhcCEEEEE------eCCeEEEecChhHHhcC
Q 002817 539 --PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVV------QGRKIVKTGSHEELISN 608 (876)
Q Consensus 539 --p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrls~i~~aD~Iivl------~~G~Ive~Gt~~eL~~~ 608 (876)
|++|||||||++||+...+.+.+.|+++. .|+|+|+|+||+.+++.||+|++| ++|+|+..|+++++.+.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 59999999999999999999988888764 589999999999999999999999 69999999999999875
No 105
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.72 E-value=3.1e-17 Score=200.83 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=123.1
Q ss_pred ccEEEEeEEEECCCC--CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHH--------HcCCCCCccEEEECCeeCC
Q 002817 380 GHIEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI--------ERFYEPLSGEILLDGNNIK 449 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~--~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL--------~~~~~p~~G~I~idG~di~ 449 (876)
+.|++++...-+-.. .+..+++|++|++++|+.++|+||+||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888876544221 134689999999999999999999999999999999 66666654432
Q ss_pred CCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 450 GLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 450 ~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
++++. .+|. .+|.. +. --..+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig~~-----------------d~--------------l~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGAG-----------------DS--------------QLKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcCch-----------------hh--------------HHHhHhhhHHHHH
Confidence 11110 0111 01110 00 0135788888888
Q ss_pred HHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhH
Q 002817 530 AISRAI--VKNPSILLLDEATSALDAESENSV-QEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604 (876)
Q Consensus 530 aiARAl--~~~p~IllLDE~tSaLD~~te~~i-~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~e 604 (876)
.+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...|+.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999988777 55555554 3899999999998888899999999999999888777
Q ss_pred Hh
Q 002817 605 LI 606 (876)
Q Consensus 605 L~ 606 (876)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 106
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=3.9e-18 Score=205.32 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=119.7
Q ss_pred cccEEEEeEEEECCCC--CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCeeCCCCCHHH
Q 002817 379 SGHIEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-PLSGEILLDGNNIKGLDLKW 455 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~--~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-p~~G~I~idG~di~~~~~~~ 455 (876)
++.|+++++ ++|-- .+..+++|+||+ |+.++|+|||||||||+++++.|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 457899988 34421 235789999999 99999999999999999999999874 67786521 1
Q ss_pred HhcceEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 456 lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
.+..+++|+| +|. -++.||+..| +|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g---------------------------------------~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG---------------------------------------KSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C---------------------------------------CSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc---------------------------------------ccHHHHHHHHHHHH
Confidence 2456899887 555 3777776443 58899999999999
Q ss_pred H--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 535 I--VKNPSILLLDEA---TSALDAESE-NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 535 l--~~~p~IllLDE~---tSaLD~~te-~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
+ +.+|+++||||| ||++|..+. ..+.+.+.+ .++|+|++||+.+....+ .-.++++++...
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 9 999999999999 999999875 567777766 589999999998877655 223455555443
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.71 E-value=8.9e-20 Score=216.29 Aligned_cols=191 Identities=17% Similarity=0.271 Sum_probs=124.9
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCeeCC
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKF----------CLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIK 449 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~i----------sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~idG~di~ 449 (876)
.++++|+++.|+.. ..++|+.+ ++++|. +|||||||||||||+++|.|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999632 12344444 367765 999999999999999999999988 7999999999963
Q ss_pred CC---CHHHHhcceEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHH
Q 002817 450 GL---DLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (876)
Q Consensus 450 ~~---~~~~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQ 525 (876)
.. ....+|+.|+|++|++.+++ .||+|||.++. .. + |..+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~-----------~~~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------I-----------AGEGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------H-----------HCSSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------h-----------cCCccccc---
Confidence 22 24578999999999998875 59999986531 00 0 01111222
Q ss_pred HHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhcC---CCeEEEEcCCchh--------hhh----
Q 002817 526 KQRIAISRAIVKNPSILLLDEA------TSALDAESENSVQEALDRVMV---GRTTVVVAHRLST--------IRN---- 584 (876)
Q Consensus 526 kQRIaiARAl~~~p~IllLDE~------tSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrls~--------i~~---- 584 (876)
++++.++++...+|+++|+||| |++||+..++.+.+.++++.+ +-++++++|.+.. ++.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 3455566666678999999999 999999999999999988532 4577888999763 222
Q ss_pred -cCEEEEEeCCeEEEecChhHHhc
Q 002817 585 -ADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 585 -aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
...|+|+.++..++.|+.+++.+
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCCC
T ss_pred CCceEEEecchhhcCcccHHHHHH
Confidence 25699999999999998766543
No 108
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.71 E-value=6.9e-20 Score=197.28 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=97.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCC---C
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD---A 485 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~---~ 485 (876)
++.+++|+|+|||||||++++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999874 2 0 0 4456777999999999999999876421 0
Q ss_pred CHHHHHHHHHHHhhhhhHhcCchhhhhh------hcCCCCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHH
Q 002817 486 TMEEITRAAKLSEAMSFISNLPERFETQ------VGERGIQLSGGQKQRIAIS--RAIVKNPSILLLDEATSALDAES 555 (876)
Q Consensus 486 ~~~~v~~a~~~a~~~~~i~~lp~G~~T~------vGe~G~~LSGGQkQRIaiA--RAl~~~p~IllLDE~tSaLD~~t 555 (876)
.....-++...+.+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000112233455677899999998875 4567889999999999998 666 999999999999999864
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=2.5e-18 Score=178.82 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=102.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCC-------CccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHH
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEP-------LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-------~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI 478 (876)
-+++|++++|+||||||||||++.|+|.+.| ..|.|.+++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 445888888642 11 2357788888888878999998
Q ss_pred HcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc-------cCCCEEEEeCCCCCC
Q 002817 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV-------KNPSILLLDEATSAL 551 (876)
Q Consensus 479 ~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~-------~~p~IllLDE~tSaL 551 (876)
.+..+.... .|++++..+++++ .+|++++|||||+.+
T Consensus 95 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFNSN------------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCSHH------------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCChH------------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 876432111 1222233333333 499999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHhc--CCCeEEEEcC----Cchhhhh-cCEEEEEeCCe
Q 002817 552 DAE-------SE-----NSVQEALDRVM--VGRTTVVVAH----RLSTIRN-ADVIAVVQGRK 595 (876)
Q Consensus 552 D~~-------te-----~~i~~~l~~~~--~~~T~I~ItH----rls~i~~-aD~Iivl~~G~ 595 (876)
|++ .+ ..+.+.|.++. .+.|+|+||| ....+.+ ||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 22 14444554443 3899999999 4444665 89999998753
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.70 E-value=5.3e-18 Score=183.66 Aligned_cols=149 Identities=23% Similarity=0.281 Sum_probs=103.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC----HHHH--hcceEEEeccCCCcc-ccHHHHHHcC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWL--RQQIGLVNQEPALFA-TTIRENILYG 481 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~----~~~l--r~~i~~V~Q~~~Lf~-~TIreNI~~g 481 (876)
+|++++|||||||||||+++.|.|+++|++|+|.++|.|+.... +..| |..++||+|++.++. .|++||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999987654 2233 467999999998775 4889998654
Q ss_pred CCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q 002817 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS--ILLLDEATSALDAESENSV 559 (876)
Q Consensus 482 ~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~--IllLDE~tSaLD~~te~~i 559 (876)
. ..+.+..+-..+...+. ....++..+|||.+||||+..+|+ ++.|| |+++. .+
T Consensus 181 ~-------------~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~ 236 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NG 236 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HH
T ss_pred H-------------hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HH
Confidence 1 01111111111211111 011246677999999999999999 44455 44443 33
Q ss_pred HHHHHHhc--CCCeEEEEcCCchh
Q 002817 560 QEALDRVM--VGRTTVVVAHRLST 581 (876)
Q Consensus 560 ~~~l~~~~--~~~T~I~ItHrls~ 581 (876)
.+.++++. .+.|+|++||...+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33333322 37899999997554
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.69 E-value=6.1e-19 Score=180.81 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=104.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEE-------CCeeCC
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY-----EPLSGEILL-------DGNNIK 449 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~-----~p~~G~I~i-------dG~di~ 449 (876)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|.|.. .|+.|.+.. ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 247888 899999999999999999999999999998 888898765 233222
Q ss_pred ---CCC--------HHHHhcceEEEeccCCCccc-cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCC
Q 002817 450 ---GLD--------LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517 (876)
Q Consensus 450 ---~~~--------~~~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~ 517 (876)
.+. .+.+++.++++.|+...+++ ++..|+..+.. ..++++.+.++. ..+|. -.++.+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~-------~~~~~---~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD-------SNIAV---LVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-------TTCCE---EEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHH-------cCCCe---EEEEec
Confidence 111 13456666666665433332 33333333211 112223332221 12231 123555
Q ss_pred CCCCCHHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 002817 518 GIQLSGGQKQR-IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567 (876)
Q Consensus 518 G~~LSGGQkQR-IaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~ 567 (876)
--.+|+||||| +..||+++++|+++++||||||+|.+....+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 55799999999 899999999999999999999999998888888887654
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.69 E-value=6.3e-18 Score=186.85 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=109.3
Q ss_pred EeEEEECCCCCCCccccceeE-------EecCCCEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCeeCCCCCHHHH
Q 002817 385 KDVSFCYPSRPDVAIFDKFCL-------DIPAGKIVALVGGSGSGKSTVISLIERFYEPL-SGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl-------~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~-~G~I~idG~di~~~~~~~l 456 (876)
.+++++|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5778888543 3466777776 77899999999999999999999999999997 567655443332 22 2
Q ss_pred hcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
+...++++|.+.-. +..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~------------~~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHR------------DTLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTT------------TBSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeecc------------ccCCHHH----------------------------------------HHHHHhh
Confidence 33456666654211 1111111 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G 594 (876)
.+||+++||||| |.++...+.++ ...|+|+|+++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77776555444 34599999999999999999999988654
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.69 E-value=1.2e-18 Score=183.80 Aligned_cols=181 Identities=16% Similarity=0.106 Sum_probs=110.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE--RFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~--~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
++++++++.|+.- + .+|.+ .|++|+.++|+||||||||||++.|+ +..++.+|.+.+++.+... .....++.
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 5566777777531 1 13333 79999999999999999999999999 7657778888887754321 12334466
Q ss_pred eEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 460 IGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 460 i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+++++|++..+. -++.++....... ...+... .. ...+-++.++...+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEKFV--------------------LE----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-cccccee--------------------cc----CcccHHHHHHHHHHHHHhhC
Confidence 888888753321 2333332211100 0000000 00 01223444444444444579
Q ss_pred CCEEEEeCCCCCCC-----HHHHHHHHHHHHHhc-CCCeEEEEcCCchhh----------hhc-CEEEEEeC
Q 002817 539 PSILLLDEATSALD-----AESENSVQEALDRVM-VGRTTVVVAHRLSTI----------RNA-DVIAVVQG 593 (876)
Q Consensus 539 p~IllLDE~tSaLD-----~~te~~i~~~l~~~~-~~~T~I~ItHrls~i----------~~a-D~Iivl~~ 593 (876)
|++++|||||+.+| ....+.+.+.++.+. .|+|+|++||.++.+ ..| |+|++|++
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999997 556666777776653 589999999999886 457 99999974
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.9e-18 Score=193.03 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=100.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcc
Q 002817 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
+.|+++|++++|+. ..+++|+||+| +||||||||||||++.|+|...|..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 46899999999964 35899999998 99999999999999999999886666 2443332211 112457
Q ss_pred eEEEeccCCCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC
Q 002817 460 IGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (876)
Q Consensus 460 i~~V~Q~~~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~ 538 (876)
+++++|++.++ +-||.||+.+|... ..++.++. +.+++. + .++++++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~---~-----------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYID---S-----------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHH---H-----------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHH---H-----------HHHHHHHHHHHHHHHhccC
Confidence 89999998876 67999999988631 11111111 122222 1 2334667899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhh
Q 002817 539 PS---ILLLDEAT-SALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (876)
Q Consensus 539 p~---IllLDE~t-SaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i 582 (876)
|+ ++++|||| +++|+..... ++.+..+.++|+|.|+...+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876422 33334578899999877653
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.67 E-value=1.3e-16 Score=157.95 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEE--
Q 002817 518 GIQLSGGQKQRIAISRAIV----KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV-- 591 (876)
Q Consensus 518 G~~LSGGQkQRIaiARAl~----~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl-- 591 (876)
..+||||||||++||||+. ++|+++||||||++||+.+++.+.+.|+++.++.++|+|||+..+...||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 4679999999999999995 5689999999999999999999999999888889999999999999999999855
Q ss_pred eCCeE
Q 002817 592 QGRKI 596 (876)
Q Consensus 592 ~~G~I 596 (876)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56643
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=8.3e-18 Score=182.51 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=80.3
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCeeCCCCCHHHHhcceEEE
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF-YEPLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~-~~p~~G~I~idG~di~~~~~~~lr~~i~~V 463 (876)
+|+++.|.. ..++++++|+| +||||+|+|||||++.|.|. ..|++| |.++|.++.. ... ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~~--~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TVQ--IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cce--EeeEEEE
Confidence 478888863 35899999988 99999999999999999998 889999 9899987753 111 4668999
Q ss_pred eccCCCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 002817 464 NQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542 (876)
Q Consensus 464 ~Q~~~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~Il 542 (876)
+|++-++ +-||.||..+|......++..... +++. +-.+..+ .++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~------~~l~---~~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTII------SYID---EQFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHH------HHHH---HHHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHH------HHHH---HHHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 569999988874211101111111 1111 1122222 368999999999999985 99
Q ss_pred EEeCCCCC-CCHHHHHHHHHHHHHhcC--CCeEEEEcCCchh
Q 002817 543 LLDEATSA-LDAESENSVQEALDRVMV--GRTTVVVAHRLST 581 (876)
Q Consensus 543 lLDE~tSa-LD~~te~~i~~~l~~~~~--~~T~I~ItHrls~ 581 (876)
++||||++ ||+... +.++++.+ +.++|+.+|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999986 999874 33333332 5677777888753
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.63 E-value=2.5e-19 Score=184.13 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=110.1
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcC-CCCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDA 485 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g-~~~~ 485 (876)
.++|++++|+||||||||||+++|.|+++|+ | ..+++|+|+.+.++.+.++|+... ..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999986 5 258889999988888888876421 1111
Q ss_pred CHHHHHHHHHHHhhhhhHhcCchh--hhhhhcCCCCCCCHHHHHHHHHH-HHHccCCCEEEEeCCC-----------CCC
Q 002817 486 TMEEITRAAKLSEAMSFISNLPER--FETQVGERGIQLSGGQKQRIAIS-RAIVKNPSILLLDEAT-----------SAL 551 (876)
Q Consensus 486 ~~~~v~~a~~~a~~~~~i~~lp~G--~~T~vGe~G~~LSGGQkQRIaiA-RAl~~~p~IllLDE~t-----------SaL 551 (876)
..+.....+.+++..|+.| ++++++++|..+||||+||+++| |+++.+++++++|||. ..|
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 1111122333445566666 77889999999999999999999 9999999999999985 346
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEcCCch
Q 002817 552 DAESENSVQEALDRVM-VGRTTVVVAHRLS 580 (876)
Q Consensus 552 D~~te~~i~~~l~~~~-~~~T~I~ItHrls 580 (876)
|...+..++..+++.. .|+|..-+.|+..
T Consensus 155 d~~~~~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 155 EVPMADLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6666666666665532 3556555555544
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.60 E-value=2.5e-16 Score=163.80 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=111.5
Q ss_pred CccccceeE-EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc---ceEEEeccCCCccc
Q 002817 397 VAIFDKFCL-DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ---QIGLVNQEPALFAT 472 (876)
Q Consensus 397 ~~vL~~isl-~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~---~i~~V~Q~~~Lf~~ 472 (876)
.+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.|.+.+.+. +.+.+++ .+++.+|+..-
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 356888888 8999999999999999999999999998888888887755433 2333322 23333332110
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCC
Q 002817 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS--ILLLDEATSA 550 (876)
Q Consensus 473 TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~--IllLDE~tSa 550 (876)
+++.+ ++........... -...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~----------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLII----------------------IDALMKEKEDQWS--LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEE----------------------EECCC----CTTB--CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEE----------------------EeccccccCceee--ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01100 1111111000000 01348999998888887778999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHhc--CCCeEEEEcCCc--------hhhhh-cCEEEEEeCCe
Q 002817 551 L--DAESENSVQEALDRVM--VGRTTVVVAHRL--------STIRN-ADVIAVVQGRK 595 (876)
Q Consensus 551 L--D~~te~~i~~~l~~~~--~~~T~I~ItHrl--------s~i~~-aD~Iivl~~G~ 595 (876)
+ |+.....+.+.|+++. .+.|+|+++|.. ..+.+ ||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9887777877777653 478999999998 33554 99999998653
No 119
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.59 E-value=6e-18 Score=185.25 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=112.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC--------CCCccEEEECCeeCCCCC---------------HHHHhcceEEE---e
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY--------EPLSGEILLDGNNIKGLD---------------LKWLRQQIGLV---N 464 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~--------~p~~G~I~idG~di~~~~---------------~~~lr~~i~~V---~ 464 (876)
+.++|+|++||||||+++.|+|++ .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998764 45778889988 7
Q ss_pred ccCCC-ccccHHHHHHcCCCCCCHHHHHHHH-------HHHhhhhhHh--cCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 465 QEPAL-FATTIRENILYGKDDATMEEITRAA-------KLSEAMSFIS--NLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 465 Q~~~L-f~~TIreNI~~g~~~~~~~~v~~a~-------~~a~~~~~i~--~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
|++.+ |+.++.||+.++.|. .+.+.. +...+.+.+. .+.+..+... +||||||||...+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-----~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-----QFTIAQSQVGYADRI 155 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-----HCHHHHHHHHTCSEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-----hchHHHHHHHhCCEE
Confidence 88764 788999999888642 222221 1111111111 1222222222 689999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCc
Q 002817 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579 (876)
Q Consensus 535 l~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 579 (876)
++.+||++ ||| +.+.+.|+++.++.|+++++|+.
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 99999977 888 56777777777789999999974
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.59 E-value=1e-16 Score=165.51 Aligned_cols=143 Identities=11% Similarity=0.107 Sum_probs=104.3
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cH----HHH
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TI----REN 477 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p--~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TI----reN 477 (876)
-..++|+.++|+||||||||||+++|.|+++| ..|+|.+.|.+.+. ..++.++|++|++.+|.. |+ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46799999999999999999999999999986 78999999877653 246789999999988865 33 355
Q ss_pred HHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 002817 478 ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557 (876)
Q Consensus 478 I~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~ 557 (876)
+.+.... |.| .+++ ++.++..++++||| ||+++.+
T Consensus 87 ~~~~~~~-------------------------yg~------------~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGNY-------------------------YGT------------SREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTEE-------------------------EEE------------EHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhcc-------------------------CCC------------CHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 4432100 000 0111 33444557999999 9999999
Q ss_pred HHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeCCeEEEecChhHHhc
Q 002817 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 558 ~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~Gt~~eL~~ 607 (876)
.+.+.+. +++|+++++|+++.++. |+ ++.| .|+.+++.+
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9988765 58899999999998876 43 6666 567777753
No 121
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=9.6e-16 Score=187.14 Aligned_cols=168 Identities=16% Similarity=0.143 Sum_probs=108.0
Q ss_pred cEEEEeEEEECC----CCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHH
Q 002817 381 HIEFKDVSFCYP----SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (876)
Q Consensus 381 ~I~~~~vsf~y~----~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~l 456 (876)
.|++++..--.= ...+..|++|+||++++|+.++|+||+||||||+++.+.+..-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 577776543110 11245799999999999999999999999999999998643110
Q ss_pred hcceEEEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 457 r~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
.+.-.+||++..-+ ++.++| +..+ |..-.+..+-.++|+|++|+..|+|+ .
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i------------------------~~~i--g~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGI------------------------FTRM--GAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEE------------------------EEEC------------CCHHHHHHHHHHHHHH-C
T ss_pred hhcCccccchhhhh--hHHHHH------------------------HHhC--ChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 00011233221100 000000 0000 00001112235789999999999999 7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc--CCCeEEEEcCCchhhhhcCEEEE-EeCCeEE
Q 002817 537 KNPSILLLDEATSALDAESENSVQ-EALDRVM--VGRTTVVVAHRLSTIRNADVIAV-VQGRKIV 597 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~-~~l~~~~--~~~T~I~ItHrls~i~~aD~Iiv-l~~G~Iv 597 (876)
.+|+++||||||+++|+.....+. ..++.+. .|+|+|++||.++....||+.-- +.++++.
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 999999999999999999888875 5555553 48999999999988877776431 4455543
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.57 E-value=9.2e-17 Score=162.20 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=92.2
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA 485 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~ 485 (876)
.+++|+.++|+||+||||||++++|.+. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 5789999999999999999999999998 778999999977643221 1345788888765 5678999986531
Q ss_pred CHHHHHHHHHHHhhhhhHhcCch--hhhhh--hcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 002817 486 TMEEITRAAKLSEAMSFISNLPE--RFETQ--VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561 (876)
Q Consensus 486 ~~~~v~~a~~~a~~~~~i~~lp~--G~~T~--vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~ 561 (876)
... . ..+....++.+.. +.+.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 0 0111011111110 11111 13344679999999999999999999976 57766655555
Q ss_pred HHHH
Q 002817 562 ALDR 565 (876)
Q Consensus 562 ~l~~ 565 (876)
.++.
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5543
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.56 E-value=3.9e-15 Score=153.53 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=96.4
Q ss_pred ccccceeE-EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHH
Q 002817 398 AIFDKFCL-DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (876)
Q Consensus 398 ~vL~~isl-~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIre 476 (876)
+.|+++.. .+++|+.++|+||+||||||++..+++ .+..+.+.+++.+ ..+.+. +++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HHH
Confidence 45777765 799999999999999999999999999 3333334443321 112222 222
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHH--HHHHHHHHHHHccC-CCEEEEeCCCCCCCH
Q 002817 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG--QKQRIAISRAIVKN-PSILLLDEATSALDA 553 (876)
Q Consensus 477 NI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGG--QkQRIaiARAl~~~-p~IllLDE~tSaLD~ 553 (876)
.... .....+++ .+.+ .+ ..+|++ |+|+++.+|+++++ |+++++||||+.+|.
T Consensus 65 ~~~~--~~~~~~~~------------~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEEA------------LSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHHH------------HHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHHH------------hhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 1110 01111111 1111 01 122333 47899999999986 999999999999997
Q ss_pred HHH-----H---HHHHHHHHhcC--CCeEEEEcCCch-------------hh-hhcCEEEEEeCC
Q 002817 554 ESE-----N---SVQEALDRVMV--GRTTVVVAHRLS-------------TI-RNADVIAVVQGR 594 (876)
Q Consensus 554 ~te-----~---~i~~~l~~~~~--~~T~I~ItHrls-------------~i-~~aD~Iivl~~G 594 (876)
..+ + .+.+.|+++.+ +.|+|+++|... .+ ..||.|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 542 2 23444655543 889999999865 34 359999999864
No 124
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=1.1e-15 Score=185.07 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=111.5
Q ss_pred ccEEEEeEEEECCCC----CCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCeeCCCCCHH
Q 002817 380 GHIEFKDVSFCYPSR----PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEILLDGNNIKGLDLK 454 (876)
Q Consensus 380 ~~I~~~~vsf~y~~~----~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~idG~di~~~~~~ 454 (876)
+.|++++.. .|-- .+..+++|++|+ ++|+.++|+|||||||||++++|.|...+ ..| ..+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 357777653 2210 234689999999 99999999999999999999999997432 222 11111
Q ss_pred HHhcceEEEeccCCCcc-ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 455 WLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 455 ~lr~~i~~V~Q~~~Lf~-~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
-+..++++.| +|. -++.||+..+. .++|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~~------------------------------------stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASGR------------------------------------STFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhhh------------------------------------hhhhHHHHH-HHHHH
Confidence 1245677766 443 25555553321 235666664 44444
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEcCCchhhhhcCEEEEEeCCeEEEe
Q 002817 534 AIVKNPSILLLDEATSALDAESENSV-QEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (876)
Q Consensus 534 Al~~~p~IllLDE~tSaLD~~te~~i-~~~l~~~~--~~~T~I~ItHrls~i~~aD~Iivl~~G~Ive~ 599 (876)
....+|+++|||||++++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 56899999999999999998765554 55566554 37899999999998888999888888888654
No 125
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=5.7e-16 Score=173.48 Aligned_cols=179 Identities=13% Similarity=0.164 Sum_probs=114.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhc
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKI--VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~--vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~ 458 (876)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++...+....++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 456666 788863 34 9999999999999 9999999999999999999984 5666665555555677
Q ss_pred ceEEEeccCCCc-cccHHHHHHcCCCCCCHH----HHHHHHHHHhhhhhHhc-------Cchhhhhh-------hcCCCC
Q 002817 459 QIGLVNQEPALF-ATTIRENILYGKDDATME----EITRAAKLSEAMSFISN-------LPERFETQ-------VGERGI 519 (876)
Q Consensus 459 ~i~~V~Q~~~Lf-~~TIreNI~~g~~~~~~~----~v~~a~~~a~~~~~i~~-------lp~G~~T~-------vGe~G~ 519 (876)
.++|++|++.++ +-|+.||+.||.. .+.+ .+.+..+. ...+++.. ++..-|+. |-+.|.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 899999999887 5699999999963 2221 11111111 11122221 12222232 234455
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEcC
Q 002817 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR-VM-VGRTTVVVAH 577 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~-~~-~~~T~I~ItH 577 (876)
.|+-.+ +.++|+|..+++|+++|+|+..|.+..-..+.+.|++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 677766 8999999999999999999999988766666666765 43 4677887775
No 126
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.52 E-value=1.4e-14 Score=155.54 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=98.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHH-cCCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL-YGKDD 484 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~-~g~~~ 484 (876)
.+++|+.++|+||+|||||||+..+.+... .|.+ +.|.+... +..+.|++.+... ..+.+++. +|. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998664 5665 33543321 2457888776532 23333332 232 1
Q ss_pred CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHH
Q 002817 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS--ALDAESE---NSV 559 (876)
Q Consensus 485 ~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS--aLD~~te---~~i 559 (876)
...++..+..+... +....+.....||+||+||+ |+++++|++++|||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 22222222222111 12223456678999998875 78889999999999999 9998544 566
Q ss_pred HHHHHHhc--CCCeEEEEcCCchhh
Q 002817 560 QEALDRVM--VGRTTVVVAHRLSTI 582 (876)
Q Consensus 560 ~~~l~~~~--~~~T~I~ItHrls~i 582 (876)
.+.|.++. .|+|+|+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 67777663 489999999987654
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.46 E-value=2.6e-14 Score=161.81 Aligned_cols=154 Identities=20% Similarity=0.287 Sum_probs=105.0
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC----HHH--HhcceEEEeccCCCc-cc
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKW--LRQQIGLVNQEPALF-AT 472 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~----~~~--lr~~i~~V~Q~~~Lf-~~ 472 (876)
-+++||++++|++++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +.. .|++|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35799999999999999999999999999999999999999999888765431 122 478899999998765 56
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcC--CCCCCCHHHHHHHHHHHHHccC-C-CEEEEeCCC
Q 002817 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE--RGIQLSGGQKQRIAISRAIVKN-P-SILLLDEAT 548 (876)
Q Consensus 473 TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe--~G~~LSGGQkQRIaiARAl~~~-p-~IllLDE~t 548 (876)
|+++||.++...- . |++- .||. |- +-.+|-.--+||+.++|++..+ | .+||..|||
T Consensus 363 tV~e~l~~a~~~~-------------~-DvVL-----IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKARN-------------I-DVLI-----ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHTT-------------C-SEEE-----ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhcC-------------C-CEEE-----EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 9999998763110 0 1110 1111 10 0011112235889999988643 5 366666688
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEcC
Q 002817 549 SALDAESENSVQEALDRVMVGRTTVVVAH 577 (876)
Q Consensus 549 SaLD~~te~~i~~~l~~~~~~~T~I~ItH 577 (876)
++.|+... .+.+.+ .-+.|.|++||
T Consensus 423 tGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 87655422 112222 13789999999
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.45 E-value=6.4e-14 Score=146.69 Aligned_cols=146 Identities=16% Similarity=0.264 Sum_probs=91.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHc--CCCC-----CccEEEECCeeCC-CCCHHHHhcceEEEeccCCCccccHHHH
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIER--FYEP-----LSGEILLDGNNIK-GLDLKWLRQQIGLVNQEPALFATTIREN 477 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~--~~~p-----~~G~I~idG~di~-~~~~~~lr~~i~~V~Q~~~Lf~~TIreN 477 (876)
-+++|+.++|+||+|||||||+..|++ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4555 6788999887521 11233455567776654 4566
Q ss_pred HHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHH-
Q 002817 478 ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV--KNPSILLLDEATSALDAE- 554 (876)
Q Consensus 478 I~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~--~~p~IllLDE~tSaLD~~- 554 (876)
+.+..+ .+.++..+. +.-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 655432 222222222 11122222 589999999999999986
Q ss_pred ------HHHH--HHH---HHHHhc--CCCeEEEEcCCchhhh--------------------hcCEEEEEeCC
Q 002817 555 ------SENS--VQE---ALDRVM--VGRTTVVVAHRLSTIR--------------------NADVIAVVQGR 594 (876)
Q Consensus 555 ------te~~--i~~---~l~~~~--~~~T~I~ItHrls~i~--------------------~aD~Iivl~~G 594 (876)
+++. +.+ .|.++. .+.|+|+++|-..... .||.|++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 4322 333 343332 3899999999655332 58999999875
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.45 E-value=2.6e-16 Score=173.33 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=115.6
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC----HHHHhcc
Q 002817 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWLRQQ 459 (876)
Q Consensus 384 ~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~----~~~lr~~ 459 (876)
++|+++.|.. ..+|+++||++++|+.++|+||+|||||||++.|.|++.|++|+|.+.|.|+.... ....|++
T Consensus 32 ~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 32 SRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp CSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3445555632 35899999999999999999999999999999999999999999999999885433 2345788
Q ss_pred eEEEeccCCCccc-------------cHHHHHH-c---CC-------CCC--CHHHHHHHHHH-------------Hhhh
Q 002817 460 IGLVNQEPALFAT-------------TIRENIL-Y---GK-------DDA--TMEEITRAAKL-------------SEAM 500 (876)
Q Consensus 460 i~~V~Q~~~Lf~~-------------TIreNI~-~---g~-------~~~--~~~~v~~a~~~-------------a~~~ 500 (876)
+++++|++.+|.. +++|.+. + |. +.. ++..+.+.+.. ....
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 9999999998852 2333331 0 10 000 11111110000 0000
Q ss_pred hhHhcCchhhh-hhhc-CCCCCCCHHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 002817 501 SFISNLPERFE-TQVG-ERGIQLSGGQKQRIAISRAIVK------NPSILLLDEATSALDAESENSVQEALDRV 566 (876)
Q Consensus 501 ~~i~~lp~G~~-T~vG-e~G~~LSGGQkQRIaiARAl~~------~p~IllLDE~tSaLD~~te~~i~~~l~~~ 566 (876)
+.+...|+-.- +.+. .....+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 00001111000 0001 0113478999999999999997 688887 9999999888888888764
No 130
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.40 E-value=3.6e-16 Score=157.73 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc-cccHHHHHHcCCCCCCHH
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATME 488 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TIreNI~~g~~~~~~~ 488 (876)
|+.++|+||+||||||+++.|.+ |.+|.+.++|.++... ..+++++|....+ +.|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999997 6789999999765432 2467888866332 457788775421
Q ss_pred HHHHHHHHHhhhhhHhc--CchhhhhhhcCCCCCC--CHHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHH
Q 002817 489 EITRAAKLSEAMSFISN--LPERFETQVGERGIQL--SGGQKQRIAISR------AIVKNPSILLLDEATSALDAESENS 558 (876)
Q Consensus 489 ~v~~a~~~a~~~~~i~~--lp~G~~T~vGe~G~~L--SGGQkQRIaiAR------Al~~~p~IllLDE~tSaLD~~te~~ 558 (876)
.... ..+....++. .|...+ .+ ..+ |+||+||+.++. +++++|+...+|+ ++|+...+.
T Consensus 67 --~~~~-~~~~~~ild~~~~~~~~~-~~----~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 67 --VNFL-LAQNDVVLDYIAFPDEAE-AL----AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp --HHHH-HTTCEEEEESCCCHHHHH-HH----HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred --HHHH-hcCCcEEEeeccCHHHHH-HH----HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0000 0110001111 011110 00 123 889999988888 8899998888884 789886666
Q ss_pred HHHHHHHhc-CCCeEEEEcCC-chhhhh-cCEEEEEeCCeEEEecChhHHh
Q 002817 559 VQEALDRVM-VGRTTVVVAHR-LSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (876)
Q Consensus 559 i~~~l~~~~-~~~T~I~ItHr-ls~i~~-aD~Iivl~~G~Ive~Gt~~eL~ 606 (876)
.+.+..+. .+.|+|..+|. ++.+.. ||+|+ ++|+++..|+.+-|-
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred -HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 66666653 35799999999 998876 99998 999999999987664
No 131
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.39 E-value=2e-11 Score=144.72 Aligned_cols=174 Identities=11% Similarity=0.202 Sum_probs=139.1
Q ss_pred hHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (876)
Q Consensus 683 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 762 (876)
..++++.+.+++++++..+.++.++.++..+...+.+.+++....... .......+..+++++.++..++.+++.+..
T Consensus 24 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (598)
T 3qf4_B 24 TLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR--RFDLLPRYMLILGTIYALTSLLFWLQGKIM 101 (598)
T ss_dssp HHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888776666665555544444445555544332211 112233456677777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (876)
Q Consensus 763 ~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l 842 (876)
...+.+...++|.++|+++++.|++||| .+++|+++||+++|++.++..++..+..++..+..++++++++++++|++
T Consensus 102 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 179 (598)
T 3qf4_B 102 LTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVIL 179 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 002817 843 TLVVVATYPLIISGHIKT 860 (876)
Q Consensus 843 ~lv~l~~~pl~~~~~~~~ 860 (876)
++++++++|+.++...+.
T Consensus 180 ~l~~l~~~~l~~~~~~~~ 197 (598)
T 3qf4_B 180 SLVTLSIVPLTVLITQIV 197 (598)
T ss_dssp HHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999888776543
No 132
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.37 E-value=2.2e-15 Score=174.25 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=118.5
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc--ccH
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TTI 474 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~--~TI 474 (876)
..+++++++.+++|+.++|+||+||||||++++|+|+++|++|.|.++|.+--.++ -+.+++++.|++. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeeccc-ccCCcCH
Confidence 34788999999999999999999999999999999999999999999987522222 1456788888766 33 378
Q ss_pred HHHHHcC---CC------CCCHHHHHHHHHHHhh-h------------hhHhc---Cchhhhhhhc-------CCCCCCC
Q 002817 475 RENILYG---KD------DATMEEITRAAKLSEA-M------------SFISN---LPERFETQVG-------ERGIQLS 522 (876)
Q Consensus 475 reNI~~g---~~------~~~~~~v~~a~~~a~~-~------------~~i~~---lp~G~~T~vG-------e~G~~LS 522 (876)
++++... +| +.+.+|...+.+.++. | +.+.+ .|.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 8877543 12 4565666666555431 1 11221 2222222211 1234579
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEE--EcCCchhhhh
Q 002817 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVV--VAHRLSTIRN 584 (876)
Q Consensus 523 GGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~-~~~T~I~--ItHrls~i~~ 584 (876)
||||||.++|. + | |+++|+++.+.+.+.|.++. .++|+|+ +||.++.+..
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 99999987752 1 6 99999987776665565554 3678875 8999998754
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.37 E-value=9.7e-13 Score=147.06 Aligned_cols=74 Identities=30% Similarity=0.413 Sum_probs=68.1
Q ss_pred CCCCHHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEE
Q 002817 519 IQLSGGQKQRI------AISRAIVKN-PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 519 ~~LSGGQkQRI------aiARAl~~~-p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
..||||||||+ ++|||+..+ |++|||||||++||+++...+.+.|.++.+++|+|+|||+.+....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 678999999 99999999999999999999999998876678999999999877779999999
Q ss_pred e
Q 002817 592 Q 592 (876)
Q Consensus 592 ~ 592 (876)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.36 E-value=1.1e-15 Score=172.17 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=89.8
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCC----CCHHHHhcceEEEe---------c
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKWLRQQIGLVN---------Q 465 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~----~~~~~lr~~i~~V~---------Q 465 (876)
+|+++ + .++|+.++|+||+||||||++++|+|+++|++|+|.++|.++.. ++...+++++++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45666 4 37999999999999999999999999999999999999988742 11223455666655 9
Q ss_pred cCCCc--c-----ccHHHHHHcCCC---------CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH
Q 002817 466 EPALF--A-----TTIRENILYGKD---------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (876)
Q Consensus 466 ~~~Lf--~-----~TIreNI~~g~~---------~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI 529 (876)
+|.++ . .|+++|+.++.. ..+..+..+.+...++ +. +. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl-------~~-~~-----~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGI-------EP-FL-----ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTC-------CH-HH-----HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCC-------cH-HH-----HHHHHHHHHHHH-
Confidence 98763 2 388999876421 1111233333322222 11 11 235799999999
Q ss_pred HHHHHHccCCCEEE
Q 002817 530 AISRAIVKNPSILL 543 (876)
Q Consensus 530 aiARAl~~~p~Ill 543 (876)
||||++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999865
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.36 E-value=2.6e-13 Score=148.99 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=81.8
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEEC-CeeCCCCCHHHHhcceEEEeccCCCccc-cHH
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-PLSGEILLD-GNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-p~~G~I~id-G~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIr 475 (876)
-++++++. .+|++++|+||||||||||+++|.|+.. |..|+|.++ |.+.. ...++.+++++|+++++.. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47788875 4799999999999999999999999999 999999987 76542 2346689999999998865 999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc
Q 002817 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (876)
Q Consensus 476 eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~ 536 (876)
|+-+ ...+.+++.+ ...++++.+ |+.-.-...-.+|| ||+||++||++++
T Consensus 280 e~~l---~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC---CCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh---cCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 9633 2344444432 222333322 33333344557899 9999999999863
No 136
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.36 E-value=3.5e-14 Score=138.58 Aligned_cols=88 Identities=15% Similarity=0.055 Sum_probs=72.8
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEe
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~ 464 (876)
+|++++|+ +..+++++||++++|++++|+||+|||||||+++|.|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 34566664 235899999999999999999999999999999999999 9999999999887421 1112 2899
Q ss_pred ccCCCccccHHHHHH-cC
Q 002817 465 QEPALFATTIRENIL-YG 481 (876)
Q Consensus 465 Q~~~Lf~~TIreNI~-~g 481 (876)
|++.+|+-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999999889999995 56
No 137
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.33 E-value=7.3e-13 Score=144.67 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=97.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH----HHhcce--EEEeccCCCcc-ccHHHHH
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK----WLRQQI--GLVNQEPALFA-TTIRENI 478 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~----~lr~~i--~~V~Q~~~Lf~-~TIreNI 478 (876)
..++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+...... .+++++ .+++|++.++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999776643 345554 49999988874 5899999
Q ss_pred HcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 002817 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558 (876)
Q Consensus 479 ~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~ 558 (876)
.++.. ...+.+. .||. |-.. .-..=.++.-.++|++..++++++||.+|. .|....
T Consensus 205 ~~~~~--------------~~~d~vl-----iDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~-- 260 (328)
T 3e70_C 205 QHAKA--------------RGIDVVL-----IDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ-- 260 (328)
T ss_dssp HHHHH--------------HTCSEEE-----EEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--
T ss_pred HHHHh--------------ccchhhH-----Hhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--
Confidence 76521 0011110 1221 1100 001112333459999999999999985554 333221
Q ss_pred HHHHHHHhcCCCeEEEEcCC
Q 002817 559 VQEALDRVMVGRTTVVVAHR 578 (876)
Q Consensus 559 i~~~l~~~~~~~T~I~ItHr 578 (876)
+ +.+.+ ..+.|.|++||-
T Consensus 261 ~-~~~~~-~~~it~iilTKl 278 (328)
T 3e70_C 261 A-RQFNE-AVKIDGIILTKL 278 (328)
T ss_dssp H-HHHHH-HSCCCEEEEECG
T ss_pred H-HHHHH-hcCCCEEEEeCc
Confidence 1 11221 237899999993
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=7.1e-13 Score=147.09 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=80.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc-cccHHHHHHcCCCCCCHH
Q 002817 411 KIVALVGGSGSGKSTVISLIER-FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATME 488 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~-~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TIreNI~~g~~~~~~~ 488 (876)
..+.|+||+|+||||++++|.| ++.|+.|.+.++|.+...... -+..+++++|++++. +.+- .+. ...+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~ 107 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRI 107 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchH
Confidence 3499999999999999999999 899999999999988764332 377899999998763 2211 011 1111
Q ss_pred HHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 002817 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568 (876)
Q Consensus 489 ~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~ 568 (876)
.+.+..+.. .... +++..+ +||| +..+|+++|||||++ ||..+.+.+.+.+++..+
T Consensus 108 ~~~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 108 VIQELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp HHHHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 233322221 1111 111111 5676 778999999999999 999999999999988777
Q ss_pred CCeEEEEcCCchhh
Q 002817 569 GRTTVVVAHRLSTI 582 (876)
Q Consensus 569 ~~T~I~ItHrls~i 582 (876)
+.++|++||+++.+
T Consensus 164 ~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 164 NIRLIMVCDSMSPI 177 (354)
T ss_dssp TEEEEEEESCSCSS
T ss_pred CCEEEEEeCCHHHH
Confidence 88999999997643
No 139
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.32 E-value=4.9e-14 Score=148.37 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=107.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc-cccHHHHHHcC---
Q 002817 409 AGKIVALVGGSGSGKSTVISLIE---RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYG--- 481 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~---~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TIreNI~~g--- 481 (876)
+++.++|+||+||||||++++|. |+..|+.|+|..+|.+.. ..+...+++++|++.++ ..|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 23455677778887665 45899998641
Q ss_pred ----------CCCCCHHHHHHHHHHHhhhhhHh--cCc-hh-hhhhhcCCCCCCCHHHHHHHHHHHHH-ccCCCEEEEe-
Q 002817 482 ----------KDDATMEEITRAAKLSEAMSFIS--NLP-ER-FETQVGERGIQLSGGQKQRIAISRAI-VKNPSILLLD- 545 (876)
Q Consensus 482 ----------~~~~~~~~v~~a~~~a~~~~~i~--~lp-~G-~~T~vGe~G~~LSGGQkQRIaiARAl-~~~p~IllLD- 545 (876)
.+ .+.++.....++... +.+- ..| +- .+-....+...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~-~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEV-DLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCC-CEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCC-CEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 11 122222111100000 0000 000 00 11112333457999 66 899 9999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 546 ---EATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 546 ---E~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
|||+++|..++..+.+.++++.+.... -+....+.+++++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~-----v~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKDVAKP-----VIELYKSRGVLHQFSG 218 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHHHHH-----HHHHHHHTTCEEEEEC
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHhHHH-----HHHHHhhcCcEEEECC
Confidence 999999999999998888765432100 0123344566777764
No 140
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.30 E-value=3.3e-11 Score=142.57 Aligned_cols=171 Identities=18% Similarity=0.179 Sum_probs=132.7
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (876)
Q Consensus 685 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~ 764 (876)
+.++.+.+++++++..+.++.++..+..+...+.+.+++....... .......+..++++++++..++.+++.+...+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG--DFSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888776666655555444444444445443332211 11122334555666667777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (876)
Q Consensus 765 ~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~l 844 (876)
.+.+...++|.++|+++++.|++||| .+++|+++||+++|++.+++.+...+..++.....++++++++++.+|++++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 167 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999999999999988899999999999999999
Q ss_pred HHHhHHHHHHHHHHH
Q 002817 845 VVVATYPLIISGHIK 859 (876)
Q Consensus 845 v~l~~~pl~~~~~~~ 859 (876)
++++++|++++...+
T Consensus 168 ~~l~~~~~~~~~~~~ 182 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVW 182 (587)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776554
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.29 E-value=2e-12 Score=144.78 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=95.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHH--HHcCCCCCcc-----EEEECCeeC-CCCCHHHHhcceEEEeccCCCccccHHHH
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISL--IERFYEPLSG-----EILLDGNNI-KGLDLKWLRQQIGLVNQEPALFATTIREN 477 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~l--L~~~~~p~~G-----~I~idG~di-~~~~~~~lr~~i~~V~Q~~~Lf~~TIreN 477 (876)
-|++|++++|+||+|||||||+.. +.+..+++.| .+++++.+. +......+++++++.+| ++.||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 4567766444 889998763 22223445566777665 57778
Q ss_pred HHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH
Q 002817 478 ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV--KNPSILLLDEATSALDAES 555 (876)
Q Consensus 478 I~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~--~~p~IllLDE~tSaLD~~t 555 (876)
+.+..+. +.++. .+++.-+++++ .+|+++++||||+.+|.+.
T Consensus 247 i~~~~~~-~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7776432 22222 22222222222 4799999999999999763
Q ss_pred H------------HHHHHHHHHhc--CCCeEEEEcCCch-------------------hhhh-cCEEEEEeCCe
Q 002817 556 E------------NSVQEALDRVM--VGRTTVVVAHRLS-------------------TIRN-ADVIAVVQGRK 595 (876)
Q Consensus 556 e------------~~i~~~l~~~~--~~~T~I~ItHrls-------------------~i~~-aD~Iivl~~G~ 595 (876)
. ..+.+.|+++. .+.|+|+|+|-.. .+.+ +|.+++|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 34455555553 3899999999832 2333 79999988763
No 142
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.28 E-value=5.9e-15 Score=153.89 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=63.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHH-cCC------------CCCccEEEECCeeCCCCCHHHHhcceEEEe
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE-RFY------------EPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~-~~~------------~p~~G~I~idG~di~~~~~~~lr~~i~~V~ 464 (876)
...+++||++++|++++|+|||||||||++++|. |++ +|..|++ +|.+....+...++.. ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4578999999999999999999999999999999 999 6666654 5543333333333322 12
Q ss_pred ccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcC-chhhhhhhcCCCCCCCHHHHHHH-HHHH-HHccCCCE
Q 002817 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNL-PERFETQVGERGIQLSGGQKQRI-AISR-AIVKNPSI 541 (876)
Q Consensus 465 Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~l-p~G~~T~vGe~G~~LSGGQkQRI-aiAR-Al~~~p~I 541 (876)
++..++.+++.+|+ +|.+....+++. +... ..+..+ +.|... -+++. .-++ .++..|+.
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~i~~~~---~~~~--~vild~~~~g~~~------------~~~~~~~~~~~v~v~~~~~ 151 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVPRKNLEDNV---DKGV--STLLVIDWQGAFK------------FMEMMREHVVSIFIMPPSM 151 (231)
T ss_dssp TTCEEEEEEETTEE-EEEECTTHHHHH---HHTC--EEEEECCHHHHHH------------HHHHSGGGEEEEEEECSCH
T ss_pred cCceehhhhhcccc-CCCCHHHHHHHH---HcCC--eEEEEcCHHHHHH------------HHHhcCCCeEEEEEECCcH
Confidence 33333334444443 444333333332 2211 111111 222221 14444 2233 34567888
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh
Q 002817 542 LLLDEATSALDAESENSVQEALDRV 566 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~ 566 (876)
.+|||.+++.|..++..+++.|...
T Consensus 152 ~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 152 EELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHHC--------------CHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8999999999999888887766543
No 143
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.26 E-value=3.8e-10 Score=133.55 Aligned_cols=170 Identities=14% Similarity=0.215 Sum_probs=126.8
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 002817 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKIT-ILFCCAAVITVIVHAIEHLSF 762 (876)
Q Consensus 684 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~i~~~~~~~~~ 762 (876)
+.+++.+.+++++++..+.++.++.++..+...+.+..++....... + . ....+. ..+++++++..++.+++.+..
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-E-S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666655555554444443333344444443322111 1 1 111222 235566677778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (876)
Q Consensus 763 ~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l 842 (876)
...+.+...++|.++|+++++.|++||| .+++|.+++|+++|++.++..+...+..++..+.+++++++++++.+|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHH
Q 002817 843 TLVVVATYPLIISGHI 858 (876)
Q Consensus 843 ~lv~l~~~pl~~~~~~ 858 (876)
++++++++|++++...
T Consensus 168 ~li~l~~~~l~~~~~~ 183 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAIS 183 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876654
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.26 E-value=3.9e-12 Score=122.96 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=68.7
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHH
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG--EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G--~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIre 476 (876)
+|+++ +|+.++|+||+|||||||++++.+++.+ +| .+.+++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46665 8999999999999999999999999987 57 555555432211
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 002817 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (876)
Q Consensus 477 NI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te 556 (876)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 3467899999999998 555557
Q ss_pred HHHHHHHHHhc-CCCe-EEEEcCC
Q 002817 557 NSVQEALDRVM-VGRT-TVVVAHR 578 (876)
Q Consensus 557 ~~i~~~l~~~~-~~~T-~I~ItHr 578 (876)
+.+.+.++... +++| +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77777777654 4678 7777774
No 145
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.22 E-value=4.3e-10 Score=133.37 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=126.5
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (876)
Q Consensus 685 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 763 (876)
.+++.+.+++++++..+.++.++..+..++..+.+..++........ ........+..+++++.++..++.+++.+...
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (595)
T 2yl4_A 8 RKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQ 87 (595)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777766655555544444433333333444332211100 00011222334455566667778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (876)
Q Consensus 764 ~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l~ 843 (876)
..+.+...++|.++|+++++.|++||| .+++|.++||+++|++.++..+...+..++..+..++++++++++++|+++
T Consensus 88 ~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 165 (595)
T 2yl4_A 88 TSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLA 165 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHH
Q 002817 844 LVVVATYPLIISGHI 858 (876)
Q Consensus 844 lv~l~~~pl~~~~~~ 858 (876)
+++++++|++++...
T Consensus 166 li~l~~~~l~~~~~~ 180 (595)
T 2yl4_A 166 TFVLSVVPPVSIIAV 180 (595)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888776644
No 146
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.21 E-value=5.9e-10 Score=131.88 Aligned_cols=170 Identities=14% Similarity=0.260 Sum_probs=126.7
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002817 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKI-TILFCCAAVITVIVHAIEHLSF 762 (876)
Q Consensus 684 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~i~~~~~~~~~ 762 (876)
..+++.+.+++++++..+.++.++.++..+...+....++...... .. . ....+ ...+++++++..++.+++.+..
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 13 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-TD-R-SVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TT-H-HHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677776666555555444443333333333333222111 11 1 11112 2335556666778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (876)
Q Consensus 763 ~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~~~l 842 (876)
...+.+...++|.++|+++++.|++||| .+++|.+++|+++|++.++..+...+..++..+.+++++++++++.+|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHH
Q 002817 843 TLVVVATYPLIISGHI 858 (876)
Q Consensus 843 ~lv~l~~~pl~~~~~~ 858 (876)
++++++++|++++...
T Consensus 168 ~li~l~~~~l~~~~~~ 183 (582)
T 3b60_A 168 SIILVVLAPIVSIAIR 183 (582)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988888877654
No 147
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=8.3e-12 Score=124.59 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=75.8
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCC
Q 002817 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD 483 (876)
Q Consensus 404 sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~ 483 (876)
+|++++|+.++|+||+|||||||++++.+.+.|.+|.. +.|+ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHH--------
Confidence 56788999999999999999999999999987766631 1121 111
Q ss_pred CCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 002817 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS-ALDAESENSVQEA 562 (876)
Q Consensus 484 ~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS-aLD~~te~~i~~~ 562 (876)
++.+..... +.++ ... -+...+.+|++|+||||++ ++|+.....+.+.
T Consensus 77 -----~~~~~~~~~--------~~~~--------~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -----DLIFRLKHL--------MDEG--------KDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -----HHHHHHHHH--------HHHT--------CCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -----HHHHHHHHH--------hcCc--------hHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111111100 0000 000 1122345999999999996 8999998888888
Q ss_pred HHHhc-CCCeEEEEcCCch
Q 002817 563 LDRVM-VGRTTVVVAHRLS 580 (876)
Q Consensus 563 l~~~~-~~~T~I~ItHrls 580 (876)
++... +++|+|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87654 6899999999864
No 148
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.21 E-value=1.5e-10 Score=136.81 Aligned_cols=173 Identities=16% Similarity=0.199 Sum_probs=129.0
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhhh----hHHHHHHHHHHHHHHHHHHHHH
Q 002817 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREV----KKITILFCCAAVITVIVHAIEH 759 (876)
Q Consensus 685 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~~~i~~~~~~ 759 (876)
++++.+.+++++++..++++.++.++..+...+.+..++........ ...... ..+..++++++++..++.+++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888887766666555444333334444444433322111 001111 2233444455556677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002817 760 LSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILN 839 (876)
Q Consensus 760 ~~~~~~~~~~s~~lh~~~~~~il~~p~~FFD~~~~p~GrIlnRfs~D~~~vd~~l~~~l~~~~~~~~~~~~~ivv~~~~~ 839 (876)
+...+.+.+...++|.++|+++++.|++||| .+++|.++||+++|++.++..+...+..++..+..++++++++++.+
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 79999999999999999999988888888888888888999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 002817 840 WRITLVVVATYPLIISGHIK 859 (876)
Q Consensus 840 ~~l~lv~l~~~pl~~~~~~~ 859 (876)
|++++++++++|++++...+
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~ 180 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYV 180 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988777553
No 149
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.20 E-value=4e-13 Score=139.25 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=108.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEE--------CCeeCCC-CCHHHHhcceEEEeccC------CCc
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY---EPLSGEILL--------DGNNIKG-LDLKWLRQQIGLVNQEP------ALF 470 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~---~p~~G~I~i--------dG~di~~-~~~~~lr~~i~~V~Q~~------~Lf 470 (876)
.+..++|+||+||||||++++|.+.| .++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999887 788999887 7887763 56778999999999987 556
Q ss_pred cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhh-cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 002817 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (876)
Q Consensus 471 ~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~v-Ge~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS 549 (876)
..++.+|+. .+++..++..+..++++...+.+..+.+ .++|.-++|+ .+++++++++++.++++++.
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 778888863 5788999999999999998888888877 4678888887 57778899999999988754
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.20 E-value=2.8e-14 Score=152.64 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=104.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccC-CCcc-ccHH
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP-ALFA-TTIR 475 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~-~Lf~-~TIr 475 (876)
.+++++++++++| ++|+||+|||||||+++|.+++.+ |.|.++|.++.+......++++++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999987 79999999998777777888999999986 4443 3677
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC------
Q 002817 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS------ 549 (876)
Q Consensus 476 eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS------ 549 (876)
|||.+..+....++. . ...+.. +.. -..|||||+||..||+|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~-~-----~~~~~~-------~~~----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-G-----ASVRVV-------NQL----LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHH-------HHH----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-h-----HHHHHH-------HHH----HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888654322111110 0 001111 111 2358999999999999999999974 99975
Q ss_pred ------CCCHHHHHHHHHHH
Q 002817 550 ------ALDAESENSVQEAL 563 (876)
Q Consensus 550 ------aLD~~te~~i~~~l 563 (876)
.-|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23666666665544
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.20 E-value=1.4e-13 Score=149.91 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=98.8
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEe-------------------cCCCEEEEEcCCCccHHHHHHHHHcCCC--CC
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDI-------------------PAGKIVALVGGSGSGKSTVISLIERFYE--PL 437 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i-------------------~~G~~vaiVG~sGsGKSTll~lL~~~~~--p~ 437 (876)
.+.|+++||++.|. ++++++++++ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35689999999993 5899999998 9999999999999999999999999999 99
Q ss_pred ccEEEE---CCeeCCCCCHHHHhcceEEEeccCCCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhh
Q 002817 438 SGEILL---DGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513 (876)
Q Consensus 438 ~G~I~i---dG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~ 513 (876)
+|+|.+ ||.+.. ...++.++++ |+.-++ .-|+.+|+.+.. ++..-.+-+ ..|. |+-.
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~------------~l~~~~~~i-~~P~-~~~~ 170 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS------------DLKSGVPNV-TAPV-YSHL 170 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH------------HHTTTCSCE-EECC-EETT
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH------------HHhCCCCce-eccc-cccc
Confidence 999999 997742 3456778999 766554 347777775531 000000001 1221 2222
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 002817 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (876)
Q Consensus 514 vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~ 553 (876)
.+ +|+..+.+...+|+++|+|.|..-.|.
T Consensus 171 ~~-----------~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 171 IY-----------DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TT-----------EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cc-----------CcccccceecCCCCEEEECchhhCCCc
Confidence 11 333333355678999999999987774
No 152
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.20 E-value=1.1e-12 Score=142.29 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=77.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCeeCCCCCHHHHh-cceEEEeccCCCc------cccH
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL---DGNNIKGLDLKWLR-QQIGLVNQEPALF------ATTI 474 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i---dG~di~~~~~~~lr-~~i~~V~Q~~~Lf------~~TI 474 (876)
+++.+|++++++||||||||||+++|. +.+|++|+|.+ +|.++..... ..+ +.+|||+|+|-+. +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 356789999999999999999999999 99999999999 9998876542 223 3799999999653 4588
Q ss_pred HHHH--HcC---------C----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 475 RENI--LYG---------K----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 475 reNI--~~g---------~----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
||+ .|+ . .......+.++++..++.+ .-++... ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~------~~~~~~~----~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC------ERYKSYL----KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH------HHHHHHH----HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH------HHHHHHH----HHHHHHHHHHHHHhc
Confidence 998 554 0 1112234555555544432 1334333 358998888889987
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.12 E-value=3.9e-11 Score=121.99 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=91.6
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cHHHHHHcCC
Q 002817 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGK 482 (876)
Q Consensus 404 sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIreNI~~g~ 482 (876)
|+++++|++++|+||||||||||+++|.|+++ .+.++|.++........+..++|++|++..|.. +..+|+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 588899888777666668889999999887754 4444432211
Q ss_pred C------CCCHHHHHHHHHHH----------hhhhhHhcC------------chhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 483 D------DATMEEITRAAKLS----------EAMSFISNL------------PERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 483 ~------~~~~~~v~~a~~~a----------~~~~~i~~l------------p~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
. ....+++.++.+.. +........ ++-....+-+||..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 01122232222211 011111111 1233344556766555667888888876
Q ss_pred Hc---cCCCEEEEeCCCCCCCHH-HHHHHHHHHH
Q 002817 535 IV---KNPSILLLDEATSALDAE-SENSVQEALD 564 (876)
Q Consensus 535 l~---~~p~IllLDE~tSaLD~~-te~~i~~~l~ 564 (876)
.. +.+|.+|.++ |.+ +.+.+.+.|.
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~ 185 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIIS 185 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHH
Confidence 54 4577777654 333 4445555554
No 154
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.12 E-value=8.3e-12 Score=131.81 Aligned_cols=110 Identities=17% Similarity=0.148 Sum_probs=86.5
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCeeC-CCCCHHHHhcceEEEec
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE---RFYEPLSGEIL--------LDGNNI-KGLDLKWLRQQIGLVNQ 465 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~---~~~~p~~G~I~--------idG~di-~~~~~~~lr~~i~~V~Q 465 (876)
.++++.+ ++|++++|+||+||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 889999999999999999999999 99999999999 999999 45678899999999995
Q ss_pred c------CCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCC
Q 002817 466 E------PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517 (876)
Q Consensus 466 ~------~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~ 517 (876)
+ .++++.++.+||. .+++..++.....++.+..........++++
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~ 145 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFREA 145 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCS
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhC
Confidence 4 5677888888874 3567777777777777777666666666543
No 155
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.10 E-value=2.1e-11 Score=137.10 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=91.6
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHH
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL 479 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~ 479 (876)
-++++|+++.|+.++|||++|||||||++.|.+..+ .+.+.+... +..++++|.|+. -..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSS-SCEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecC-cceEEEEeccc
Confidence 479999999999999999999999999999999843 334443333 233566666654 11122333222
Q ss_pred cCC-----CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 002817 480 YGK-----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (876)
Q Consensus 480 ~g~-----~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~ 554 (876)
+.. ...... ..+.. ..++..+..+.-. .+.-.+||+||+||.++|||+..+|.|++| +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~--era~~lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHI--ARTRVLLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHH--TSSSEEEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHH--HHHHhhhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 211 001111 11111 1111112111100 122246999999999999999999999999 899987
Q ss_pred HHHHHHHHHHHhc-CCCeEEEEcC
Q 002817 555 SENSVQEALDRVM-VGRTTVVVAH 577 (876)
Q Consensus 555 te~~i~~~l~~~~-~~~T~I~ItH 577 (876)
....+.+..+.+. .+.+++.||.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6533333322222 3567776664
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.08 E-value=1.5e-11 Score=133.24 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=68.7
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCeeCCCCCHHHHhcceEEEeccCC-------------
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL---DGNNIKGLDLKWLRQQIGLVNQEPA------------- 468 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i---dG~di~~~~~~~lr~~i~~V~Q~~~------------- 468 (876)
|++.+|++++|+||||||||||+++|.|+.+|++|+|.+ +|.++.........+.+++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9999876552211246999999985
Q ss_pred ---Cc-cccHHHHHHcCC---CCCCHHHHHHHHHHHhhh-hhHhcCch
Q 002817 469 ---LF-ATTIRENILYGK---DDATMEEITRAAKLSEAM-SFISNLPE 508 (876)
Q Consensus 469 ---Lf-~~TIreNI~~g~---~~~~~~~v~~a~~~a~~~-~~i~~lp~ 508 (876)
+| +-|+ ||+.|+. .......+.++++..++. +...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 34 3478 9999863 122345678888877773 44444443
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.01 E-value=4.3e-10 Score=121.22 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=93.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCCCH
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~~ 487 (876)
++|+.++++||+||||||++..|.+.+.+++|. ++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHHHH-------
Confidence 479999999999999999999999999987781 4778888873 4444444321
Q ss_pred HHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 002817 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567 (876)
Q Consensus 488 ~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~ 567 (876)
.++..+ +|. ... ..++..|.+|+++ ++||++|+| |+++|...+..+.+..+-..
T Consensus 156 -----~~~~~g-------l~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELLQ-------APL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTTT-------CCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhcC-------CCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 111111 111 000 1235567888875 999999999 99999876665554333222
Q ss_pred ---CCCeEEEE--cCCchhhhh-cCEEEEEeCCeEEE
Q 002817 568 ---VGRTTVVV--AHRLSTIRN-ADVIAVVQGRKIVK 598 (876)
Q Consensus 568 ---~~~T~I~I--tHrls~i~~-aD~Iivl~~G~Ive 598 (876)
.+.+++++ +|..+.+.+ +|++..++.|.|+-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 33456666 899877766 77766667777775
No 158
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.00 E-value=1.5e-10 Score=125.06 Aligned_cols=98 Identities=14% Similarity=0.271 Sum_probs=72.3
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCC
Q 002817 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK 482 (876)
Q Consensus 403 isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~ 482 (876)
++++.++|+.++|+||+||||||++..|.+.+.+..|+|.+.+.|... ....
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHH-------
Confidence 455677899999999999999999999999999988899887766421 0111
Q ss_pred CCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH---HHHHHHccCCCEEEEeCCCC
Q 002817 483 DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI---AISRAIVKNPSILLLDEATS 549 (876)
Q Consensus 483 ~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI---aiARAl~~~p~IllLDE~tS 549 (876)
+++...++..+ +|. + ..+|||+.||+ +|+||+.++||++|+|+|..
T Consensus 149 -----eqL~~~~~~~g-------l~~-----~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVG-------ATV-----I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHT-------CEE-----E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcC-------CcE-----E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12222222221 221 1 24579999999 99999999999999999974
No 159
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.00 E-value=1.8e-10 Score=124.19 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=91.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
+.++++++.|+.. . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|++.-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 4566777778532 1 678888 89999999999999999999999999999999999887764311110
Q ss_pred EEeccCCCccccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCE
Q 002817 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (876)
Q Consensus 462 ~V~Q~~~Lf~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~I 541 (876)
+....++..++ .-+|.| ..-...+-||.+|+++...++|+
T Consensus 144 ---------------------------ql~~~~~~~~l----~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKVGV----PVLEVM---------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHHTC----CEEECC---------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccCCe----EEEEcC---------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 00001111111 112211 11234456799999998899999
Q ss_pred EEEeCC-CCCCCHHHHHHHHHHHHHh
Q 002817 542 LLLDEA-TSALDAESENSVQEALDRV 566 (876)
Q Consensus 542 llLDE~-tSaLD~~te~~i~~~l~~~ 566 (876)
+|+|+| ++++|...-..+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777776665543
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.99 E-value=2e-11 Score=122.65 Aligned_cols=128 Identities=19% Similarity=0.353 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHH
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYE-------------PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~-------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIre 476 (876)
|+.++|+||||||||||+++|.|+++ |..|++ +|.+....+.+.+++.+. |+..+++.++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 888886 888777777777666543 566667777666
Q ss_pred HHHcCCCCCCHHHHHHHHHH----------Hhh---hh---------hHhc-CchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 477 NILYGKDDATMEEITRAAKL----------SEA---MS---------FISN-LPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 477 NI~~g~~~~~~~~v~~a~~~----------a~~---~~---------~i~~-lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
|+ ||.+. +++.++.+. .++ .+ ||.. -++-+...+-+||..-....+||++-|+
T Consensus 76 ~~-yg~~~---~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGSTV---ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEEEH---HHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCcH---HHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 65 66432 222222221 111 11 1111 1256666777888887888899999998
Q ss_pred HHc-----cCCCEEEEeC
Q 002817 534 AIV-----KNPSILLLDE 546 (876)
Q Consensus 534 Al~-----~~p~IllLDE 546 (876)
+-+ +.+|.+|..|
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 765 5678877765
No 161
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.96 E-value=2.3e-10 Score=130.23 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=58.9
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHH--------HHhcceEEEeccCC
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK--------WLRQQIGLVNQEPA 468 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~--------~lr~~i~~V~Q~~~ 468 (876)
+|+|+||+|++ +++||+||||||||||+++|.|+++|++|+|.++|.++...+.. .++..+.|+.+++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLETV 95 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGSCSSEEEEEEEEE
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhcCCCceEEEEehh
Confidence 69999999999 99999999999999999999999999999999999998765533 22344577766653
No 162
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=5.9e-12 Score=140.23 Aligned_cols=169 Identities=13% Similarity=0.147 Sum_probs=108.3
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHc------------CCCCCccEEEECCeeCCCCCH-HHHhcce---EEEeccCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIER------------FYEPLSGEILLDGNNIKGLDL-KWLRQQI---GLVNQEPAL 469 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~------------~~~p~~G~I~idG~di~~~~~-~~lr~~i---~~V~Q~~~L 469 (876)
++++|..++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 668999999998843211000 0001122 366677766
Q ss_pred ccc-cHHHHHHcCCCCCCHHHHHHHHHHHhh-hhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCC--CEEEEe
Q 002817 470 FAT-TIRENILYGKDDATMEEITRAAKLSEA-MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP--SILLLD 545 (876)
Q Consensus 470 f~~-TIreNI~~g~~~~~~~~v~~a~~~a~~-~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p--~IllLD 545 (876)
..+ |..|++ . ++.....+.+.. ...++... + .....+||+. || ||+++|
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~~~---d----~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRAFD---D----AEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEECCC---T----TCSSCCSSSS------------CHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhccc---c----ceeeeecccc------------Ccchhhhhch
Confidence 543 322222 0 122222221111 11111111 1 2223356542 99 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEcCCchhhhh-cCEEE-EEeCC-eEEEecChh
Q 002817 546 EATSALDAESENSVQEALDRV-MV-GRTTVVVAHRLSTIRN-ADVIA-VVQGR-KIVKTGSHE 603 (876)
Q Consensus 546 E~tSaLD~~te~~i~~~l~~~-~~-~~T~I~ItHrls~i~~-aD~Ii-vl~~G-~Ive~Gt~~ 603 (876)
||++.+|.+..+...+.++.. .+ ++|+ ++|.+..+.. ||+|. +|++| +++..|+.+
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999887777777766 44 4453 3999988765 99999 99999 888777643
No 163
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.90 E-value=2.9e-12 Score=137.33 Aligned_cols=136 Identities=20% Similarity=0.282 Sum_probs=96.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEE
Q 002817 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (876)
Q Consensus 383 ~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~ 462 (876)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++.+++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3455555563 235799999999999 99999999999999999999986 8999999988766666666778888
Q ss_pred EeccCC-Cc-cccHHHHH-HcCCCCCC-----HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 463 VNQEPA-LF-ATTIRENI-LYGKDDAT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 463 V~Q~~~-Lf-~~TIreNI-~~g~~~~~-----~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
++|++. .+ .-++.||| .++..... .++..+. +..++ ..|||||+||..+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~---------~~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH---------HHHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH---------HHHHH-----------HHHhCCCCCCCEEEEE
Confidence 999864 33 34677888 44431110 1111111 11111 1378999999999999
Q ss_pred HccCCCEEEEeCC
Q 002817 535 IVKNPSILLLDEA 547 (876)
Q Consensus 535 l~~~p~IllLDE~ 547 (876)
+..+|++ ||++
T Consensus 184 ~t~~p~~--ld~~ 194 (278)
T 1iy2_A 184 ATNRPDI--LDPA 194 (278)
T ss_dssp EESCTTS--SCHH
T ss_pred ecCCchh--CCHh
Confidence 9999986 5543
No 164
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.88 E-value=1.3e-10 Score=117.06 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=64.5
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCeeCCCCCHHHHhcceEEEeccCCCcc
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-------------PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA 471 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~-------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~ 471 (876)
+...+|+.++|+||||||||||+++|++.++ |..|+ +||.|..-++.+.+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445899999999999999999999999986 77888 799999999999999986 69999999
Q ss_pred ccHHHHHHcCCC
Q 002817 472 TTIRENILYGKD 483 (876)
Q Consensus 472 ~TIreNI~~g~~ 483 (876)
+++.+| .||.+
T Consensus 89 ~~~~~n-~YGt~ 99 (197)
T 3ney_A 89 GSYQGN-MFGTK 99 (197)
T ss_dssp EEETTE-EEEEE
T ss_pred hhhhce-ecccc
Confidence 999999 59965
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.86 E-value=3.6e-12 Score=134.61 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=97.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceE
Q 002817 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (876)
Q Consensus 382 I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~ 461 (876)
.+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34566666663 235799999999999 99999999999999999999886 899999998876655566677888
Q ss_pred EEeccCC-Cc-cccHHHHH-HcCCCCC-----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHH
Q 002817 462 LVNQEPA-LF-ATTIRENI-LYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (876)
Q Consensus 462 ~V~Q~~~-Lf-~~TIreNI-~~g~~~~-----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiAR 533 (876)
+++|++. .+ .-++.||| .++.... ..++..+. +..+. ..|||||+||..+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~---------~~~ll-----------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLL-----------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH---------HHHHH-----------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH---------HHHHH-----------HHHhCCCCCCCEEEE
Confidence 8888864 33 34667777 4443111 01111111 11111 136799999999999
Q ss_pred HHccCCCEEEEeCCC
Q 002817 534 AIVKNPSILLLDEAT 548 (876)
Q Consensus 534 Al~~~p~IllLDE~t 548 (876)
|+..+|++ ||++.
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999986 67665
No 166
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.84 E-value=5.5e-10 Score=120.37 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=45.8
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCeeCCCCCHHHHhcceEEEeccCCCcc-----ccHHH
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL---DGNNIKGLDLKWLRQQIGLVNQEPALFA-----TTIRE 476 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i---dG~di~~~~~~~lr~~i~~V~Q~~~Lf~-----~TIre 476 (876)
+++.+|++++|+||||+|||||+|.|.|+.+|..|+|.+ +|.++.... ...+..++||+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 888876543 222333899999997654 578 9
Q ss_pred HHH
Q 002817 477 NIL 479 (876)
Q Consensus 477 NI~ 479 (876)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 993
No 167
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.82 E-value=1.6e-10 Score=132.55 Aligned_cols=162 Identities=17% Similarity=0.203 Sum_probs=96.1
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHH
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIER--FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL 479 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~--~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~ 479 (876)
.+++++.+|..+.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. +|.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 4788899999999999999999999999886 67777788888888877655444331 123221 1111110
Q ss_pred cCCC--CCCHHHHHH---HHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHH----------HHHHHHccCCC-EEE
Q 002817 480 YGKD--DATMEEITR---AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI----------AISRAIVKNPS-ILL 543 (876)
Q Consensus 480 ~g~~--~~~~~~v~~---a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRI----------aiARAl~~~p~-Ill 543 (876)
.+.. ..-.+|+.+ ..+..+..++ .+|+..+. ..+||||+||. ++||++-..|. +++
T Consensus 231 ~a~~~L~~~~~EmerR~~ll~~~Gv~~i-----~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 231 DAANALRWCVNEMERRYKLMSALGVRNL-----AGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSH-----HHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccH-----HHHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 0000 000011111 1111111110 12332222 13688888753 46788888898 788
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHh----c-CCCeEEEEcCCch
Q 002817 544 LDEATSALDAESENSVQEALDRV----M-VGRTTVVVAHRLS 580 (876)
Q Consensus 544 LDE~tSaLD~~te~~i~~~l~~~----~-~~~T~I~ItHrls 580 (876)
+||+++.+|.. .+.+.+.|.++ . -|.++|++|||++
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999998843 23444444432 1 2779999999998
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.79 E-value=2.6e-11 Score=133.58 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=96.5
Q ss_pred EeEEEECCCCCCCccccceeEEecCC-------CEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCeeCCCCCH
Q 002817 385 KDVSFCYPSRPDVAIFDKFCLDIPAG-------KIVALVGGSGSGKSTVISLIERFY----EPLSGEILLDGNNIKGLDL 453 (876)
Q Consensus 385 ~~vsf~y~~~~~~~vL~~isl~i~~G-------~~vaiVG~sGsGKSTll~lL~~~~----~p~~G~I~idG~di~~~~~ 453 (876)
++++..|.. ..+++++++.+++| +.++|+||+|+|||||+++|.+++ .+++|.+..+|.|+..+..
T Consensus 22 ~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 22 KSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred ccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 344444532 35889999999877 899999999999999999999998 7788888777766543211
Q ss_pred HHHhcceEEEeccCCCccccHHHHHHcCCCCCC------HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHH
Q 002817 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (876)
Q Consensus 454 ~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~~------~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 527 (876)
..-+..|.++.|...++. ++.|++.....+.. ..+-.+.++. .+..+ .+ .|-.|. ...||+||||
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~-~l~~~--~l-i~at~~----~~~Ls~~l~s 169 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRI-DIQPF--TL-VGATTR----SGLLSSPLRS 169 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC----------------CCC--EE-EEEESC----GGGSCHHHHT
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccc-cCCCe--EE-EEecCC----cccCCHHHHH
Confidence 112467999999887765 88888743211100 0000000000 00000 00 012222 3479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~ 566 (876)
|++++ ..||+.+...+.+.|++.
T Consensus 170 R~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 170 RFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp TCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred hcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 98655 667777777777777654
No 169
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.74 E-value=3.3e-10 Score=116.94 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=52.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH-------
Q 002817 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL------- 453 (876)
Q Consensus 381 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~------- 453 (876)
.|+++|+...|. . ++++++ ++++|+||||||||||+++|.|++.|++|+|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 578888865542 1 456666 8999999999999999999999999999999999998844332
Q ss_pred -HHHhcceEEEecc
Q 002817 454 -KWLRQQIGLVNQE 466 (876)
Q Consensus 454 -~~lr~~i~~V~Q~ 466 (876)
...+..++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2357789999984
No 170
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.74 E-value=2.5e-08 Score=109.91 Aligned_cols=144 Identities=22% Similarity=0.365 Sum_probs=82.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA 485 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~~ 485 (876)
-+++|+.+.|.||+|||||||+..+........|. +.|+.-+.. ++....+ .+|.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~-------------------vlyi~~E~~-~~~~~a~--~lG~~-- 112 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI-------------------AAFIDAEHA-LDPEYAK--KLGVD-- 112 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------------------EEEEESSCC-CCHHHHH--HTTCC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-------------------EEEEECCCC-cCHHHHH--HcCCC--
Confidence 57899999999999999999987777655433332 334333321 1100000 01110
Q ss_pred CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CH
Q 002817 486 TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN--PSILLLDEATSAL----------DA 553 (876)
Q Consensus 486 ~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~--p~IllLDE~tSaL----------D~ 553 (876)
.+.+. +-+ ..++ .|-+.++|++.++ |+++++|++++-+ |+
T Consensus 113 -----------------~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 113 -----------------TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00000 000 0112 2445688888765 9999999999998 32
Q ss_pred ---HHHHHHHHHHHHh-----cCCCeEEEEcCCch----------------hhh-hcCEEEEEeCCeEEEecC
Q 002817 554 ---ESENSVQEALDRV-----MVGRTTVVVAHRLS----------------TIR-NADVIAVVQGRKIVKTGS 601 (876)
Q Consensus 554 ---~te~~i~~~l~~~-----~~~~T~I~ItHrls----------------~i~-~aD~Iivl~~G~Ive~Gt 601 (876)
...+.+.+.++++ ..+.|+|+++|-.. .++ .||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1122344444433 24889999999543 143 489888888877765554
No 171
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.74 E-value=2.1e-10 Score=115.42 Aligned_cols=143 Identities=23% Similarity=0.223 Sum_probs=75.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-----------CccEEEECCeeCCC--CCHHHHhcceEEEeccCCCccc--cHHH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEP-----------LSGEILLDGNNIKG--LDLKWLRQQIGLVNQEPALFAT--TIRE 476 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p-----------~~G~I~idG~di~~--~~~~~lr~~i~~V~Q~~~Lf~~--TIre 476 (876)
+++|||++|||||||++.+.|...+ .+|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 58999999976531 2222222223333332100000 1111
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 002817 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556 (876)
Q Consensus 477 NI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te 556 (876)
+. +..+.+++....+...... -...|- -.++.+ ..|..-..++..+||++.++|+++++| |||+|.+..
T Consensus 111 ~~----~~~s~~~~~~~~~~~~~~~-~~~~~i---~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IA----KHLTYENVERWLKELRDHA-DSNIVI---MLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TT----CHHHHHTHHHHHHHHHHHS-CTTCEE---EEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred Cc----CHHHHHHHHHHHHHHHHhc-CCCCcE---EEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 10 0001111111111000000 000000 001111 011111123478899999999999999 999999988
Q ss_pred HHHHHHHHH
Q 002817 557 NSVQEALDR 565 (876)
Q Consensus 557 ~~i~~~l~~ 565 (876)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766654
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.73 E-value=3.1e-09 Score=110.96 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=86.7
Q ss_pred cccce-eEEecCCCEEEEEcCCCccHHHHHH-HHHcCCCCCccEEEECCeeCCCCCHHHHhc---ceEEEeccCCCcccc
Q 002817 399 IFDKF-CLDIPAGKIVALVGGSGSGKSTVIS-LIERFYEPLSGEILLDGNNIKGLDLKWLRQ---QIGLVNQEPALFATT 473 (876)
Q Consensus 399 vL~~i-sl~i~~G~~vaiVG~sGsGKSTll~-lL~~~~~p~~G~I~idG~di~~~~~~~lr~---~i~~V~Q~~~Lf~~T 473 (876)
.|+++ .--+++|+.++|+||+||||||++. ++.+..+...+.+.+++.+ +.+.+++ ++++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46665 5679999999999999999999955 4455554444555555432 2232222 23444332100
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCC
Q 002817 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV--KNPSILLLDEATSAL 551 (876)
Q Consensus 474 IreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~--~~p~IllLDE~tSaL 551 (876)
.+|+.+-.. . .+.+..+++ .+..+-+. +....+....++.++ .+|+++++|++++-+
T Consensus 83 -~~~l~~~~~--~-------------~~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 83 -KGMFAMVDA--F-------------TAGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp -HTSEEEEEC--S-------------TTTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred -CCcEEEEec--c-------------hhhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 001110000 0 000000000 00000010 112334444444444 479999999999988
Q ss_pred --CHHHHHHHHHHHHHh--cCCCeEEEEcCCchh---------hhhcCEEEEEeC
Q 002817 552 --DAESENSVQEALDRV--MVGRTTVVVAHRLST---------IRNADVIAVVQG 593 (876)
Q Consensus 552 --D~~te~~i~~~l~~~--~~~~T~I~ItHrls~---------i~~aD~Iivl~~ 593 (876)
|....+.....+.+. ..|.|+|+++|.... ...||.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 543333333334333 247899999998764 355899999974
No 173
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.73 E-value=4.1e-10 Score=112.39 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEE----------ECCeeCCCCCHHHHhcceEEEeccCCCccccHHH
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEIL----------LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~----------idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIre 476 (876)
.+|++++|+||||||||||+++|.+++++ ..|.|. ++|.+...++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999874 445543 46777777788888775 56889999999999
Q ss_pred HHHcCCCCCCHHHHHHHH
Q 002817 477 NILYGKDDATMEEITRAA 494 (876)
Q Consensus 477 NI~~g~~~~~~~~v~~a~ 494 (876)
| .||.+ .+++.+++
T Consensus 80 n-~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIH 93 (180)
T ss_dssp E-EEEEE---HHHHHHHH
T ss_pred c-ccccc---HHHHHHHH
Confidence 9 67754 34444443
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.71 E-value=2.2e-08 Score=114.69 Aligned_cols=177 Identities=12% Similarity=0.166 Sum_probs=108.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCeeCCCCCHHHHhcce-EEEeccCCCccccHH
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-EILLDGNNIKGLDLKWLRQQI-GLVNQEPALFATTIR 475 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G-~I~idG~di~~~~~~~lr~~i-~~V~Q~~~Lf~~TIr 475 (876)
+.|+++..-+++|+++.|.|++|+||||++.-+.+...+..| .|.+-+. +++.+.+++++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-H
Confidence 368888888999999999999999999999999987766545 4555442 34455554442 111000 0 1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH
Q 002817 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV--KNPSILLLDEATSALDA 553 (876)
Q Consensus 476 eNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~--~~p~IllLDE~tSaLD~ 553 (876)
+++.-|. .++++..+..+..+ .+...|- .+-+ ...+|++|.+ +.||++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g~--l~~~~~~~~~~a~~---~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTGK--LTPEDWGKLTMAMG---SLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTSC--CCHHHHHHHHHHHH---HHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcCC--CCHHHHHHHHHHHH---HHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 2233342 34444333322222 1222221 1111 2478999876 6777776 57999999999998753
Q ss_pred H-----HH---HHHHHHHHHhc--CCCeEEEEcC-----------Cch--------hh-hhcCEEEEEeCCeE
Q 002817 554 E-----SE---NSVQEALDRVM--VGRTTVVVAH-----------RLS--------TI-RNADVIAVVQGRKI 596 (876)
Q Consensus 554 ~-----te---~~i~~~l~~~~--~~~T~I~ItH-----------rls--------~i-~~aD~Iivl~~G~I 596 (876)
. .. ..+.+.|+++. .+.|+|+++| |+. .+ ..||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 12 33445555543 3789999999 132 33 35999999987654
No 175
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.71 E-value=7.6e-10 Score=131.48 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=102.1
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCeeCCCCCHHHHhcceEEEeccC--------
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-GEILLDGNNIKGLDLKWLRQQIGLVNQEP-------- 467 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~-G~I~idG~di~~~~~~~lr~~i~~V~Q~~-------- 467 (876)
..+++++++.+++|+.+.|+||+||||||++++|.++.++.. |.+.+++.+....+ ..++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHHHH
Confidence 357899999999999999999999999999999999999988 88999887665443 4688888754
Q ss_pred --------------CCc-cccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhc------CCCCCCCHHHH
Q 002817 468 --------------ALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG------ERGIQLSGGQK 526 (876)
Q Consensus 468 --------------~Lf-~~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vG------e~G~~LSGGQk 526 (876)
|.| ..++.+|+..++...... .++......+...+| .....+|+|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~------------~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA------------PFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSC------------CEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCC------------CEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 222 123334443332100000 000000000111111 12235999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002817 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565 (876)
Q Consensus 527 QRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~ 565 (876)
|++..++....++.+|+|||.-. |++.....+.+.|++
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999988 798888888888864
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.70 E-value=3.6e-09 Score=126.67 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=97.7
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHc-
Q 002817 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY- 480 (876)
Q Consensus 404 sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p--~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~- 480 (876)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.++.....++.+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999987765 78998 89999999999999999999999999988887777752
Q ss_pred -CCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 002817 481 -GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559 (876)
Q Consensus 481 -g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i 559 (876)
|..+.. .++..+++ ..|+.++++| |++++|.+++..+
T Consensus 82 pG~~~f~-~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDFV-GEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGGH-HHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccchH-HHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHH
Confidence 221110 11111111 2356677777 8888888888666
Q ss_pred HHHHHHhcCCCeEEEEcCCchh
Q 002817 560 QEALDRVMVGRTTVVVAHRLST 581 (876)
Q Consensus 560 ~~~l~~~~~~~T~I~ItHrls~ 581 (876)
..+.. .+.++|++.|.+..
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGG
T ss_pred HHHHH---ccCCEEEEecCCch
Confidence 54432 36778888888764
No 177
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.67 E-value=4.4e-09 Score=107.20 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=67.1
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHHHcCCCC
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD 484 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI~~g~~~ 484 (876)
=++++|++++|+|++||||||++++|.+.++ .+.+++||++++++ +|+.++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~~ 69 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKNG 69 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccccC
Confidence 4678899999999999999999999999875 28999999999986 677665543
Q ss_pred CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 002817 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (876)
Q Consensus 485 ~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS 549 (876)
....++.+++....+.+++..+.++... -.++.|.++ ..+++++|+|=|..
T Consensus 70 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~--------~~~~~~vi~eg~~~ 120 (207)
T 2qt1_A 70 FLQYDVLEALNMEKMMSAISCWMESARH------SVVSTDQES--------AEEIPILIIEGFLL 120 (207)
T ss_dssp CBCCSSGGGBCHHHHHHHHHHHHHHHTT------SSCCC-------------CCCCEEEEECTTC
T ss_pred CChhHHHHHhHHHHHHHHHHHHHhCCCC------CCcCCCeee--------cCCCCEEEEeehHH
Confidence 3222233333334444444333222110 134555554 45778899986653
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=4.5e-10 Score=124.68 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=87.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHH
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIREN 477 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreN 477 (876)
.+++++++.+++|+.++|+||+|||||||+++|.+.+ +|.+..-+ . +.+.++..+++++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 5799999999999999999999999999999999964 67776511 1 1122344588899887543 334
Q ss_pred HHcCCC------CCCHHHHHHHHHHHhhhhhHh-----------------cCchhhhhhhcCCCCCCCHHHHHHHHHHHH
Q 002817 478 ILYGKD------DATMEEITRAAKLSEAMSFIS-----------------NLPERFETQVGERGIQLSGGQKQRIAISRA 534 (876)
Q Consensus 478 I~~g~~------~~~~~~v~~a~~~a~~~~~i~-----------------~lp~G~~T~vGe~G~~LSGGQkQRIaiARA 534 (876)
+.+... ...+ +. ....+.+.+. -+|.| .+.++-..+++|.+||++.+.+
T Consensus 225 ~~~~~~~~r~l~~~~~--~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~ 296 (377)
T 1svm_A 225 VKGTGGESRDLPSGQG--IN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQID 296 (377)
T ss_dssp CCCSTTTTTTCCCCSH--HH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEE
T ss_pred HHHHHHHHhhccccCc--ch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhc
Confidence 433321 0111 10 1111112121 01122 1334556789999999999999
Q ss_pred HccCCCEEE-EeCCCC
Q 002817 535 IVKNPSILL-LDEATS 549 (876)
Q Consensus 535 l~~~p~Ill-LDE~tS 549 (876)
++.+|++++ ||+|+.
T Consensus 297 l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 297 FRPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCCHHHHHHHHTCTH
T ss_pred cCCCCCeEEEEeCCHH
Confidence 999999998 999987
No 179
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=3.9e-09 Score=107.81 Aligned_cols=72 Identities=26% Similarity=0.251 Sum_probs=56.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCC-CccEEE----------ECCeeCCCCCHHHHhcceEEEeccCCCccccHHH
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEP-LSGEIL----------LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p-~~G~I~----------idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIre 476 (876)
++|++++|+|||||||||+++.|.+.++| ..+.+. .+|.+....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 443333 356666666777777765 5777888888887
Q ss_pred HHHcCCC
Q 002817 477 NILYGKD 483 (876)
Q Consensus 477 NI~~g~~ 483 (876)
| .||.+
T Consensus 83 ~-~yg~~ 88 (208)
T 3tau_A 83 N-YYGTP 88 (208)
T ss_dssp E-EEEEE
T ss_pred c-cCCCc
Confidence 7 57754
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.50 E-value=6.4e-08 Score=107.48 Aligned_cols=46 Identities=30% Similarity=0.410 Sum_probs=36.2
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCe
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER--FYEPLSGEILLDGN 446 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~--~~~p~~G~I~idG~ 446 (876)
.+|++++++++ .++|||++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 47899999998 999999999999999999999 77888887765544
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.44 E-value=2.6e-07 Score=105.48 Aligned_cols=114 Identities=21% Similarity=0.369 Sum_probs=76.2
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHH
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI 478 (876)
.++++++++++| +.|+||+|+||||+++++.+.... .+-+++
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is-------------- 81 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHIS-------------- 81 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEE--------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCC--------------
Confidence 567788888888 889999999999999999985421 011110
Q ss_pred HcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC---------
Q 002817 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS--------- 549 (876)
Q Consensus 479 ~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS--------- 549 (876)
..+++..+ +| .|++++|-.+++|....|.|+++||+-+
T Consensus 82 --------------------~~~~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 82 --------------------GSDFVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp --------------------GGGTTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred --------------------HHHHHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00111111 12 2788999999999999999999999943
Q ss_pred -CCCHHHHHHHHHHHHHh-----cCCCeEEEEcCCchhhh
Q 002817 550 -ALDAESENSVQEALDRV-----MVGRTTVVVAHRLSTIR 583 (876)
Q Consensus 550 -aLD~~te~~i~~~l~~~-----~~~~T~I~ItHrls~i~ 583 (876)
+.|.+.++.+.+.+..+ ..+..+|..||+.+.+.
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 56666665555555433 23567888999986543
No 182
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.41 E-value=1.4e-08 Score=118.22 Aligned_cols=72 Identities=26% Similarity=0.302 Sum_probs=55.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEE-ECCeeCCC-------CCH---HHHhcceEEEeccCCCccc
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-EIL-LDGNNIKG-------LDL---KWLRQQIGLVNQEPALFAT 472 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G-~I~-idG~di~~-------~~~---~~lr~~i~~V~Q~~~Lf~~ 472 (876)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++. ..+++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999987 784 99987643 222 23456789999872
Q ss_pred cHHHHHHcC
Q 002817 473 TIRENILYG 481 (876)
Q Consensus 473 TIreNI~~g 481 (876)
+..+|+.+.
T Consensus 439 ~~~~~ivi~ 447 (552)
T 3cr8_A 439 TKNRGIAIC 447 (552)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 455666554
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.40 E-value=6.2e-08 Score=97.75 Aligned_cols=138 Identities=24% Similarity=0.279 Sum_probs=71.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC-----CCC------ccEEEECCeeCC----CCC-HHHHhcceEEEeccCC--C--cc
Q 002817 412 IVALVGGSGSGKSTVISLIERFY-----EPL------SGEILLDGNNIK----GLD-LKWLRQQIGLVNQEPA--L--FA 471 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~-----~p~------~G~I~idG~di~----~~~-~~~lr~~i~~V~Q~~~--L--f~ 471 (876)
+++|+|++|||||||++.|.|.. .|+ .|+|.++|.++. +.. .+..|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 678999997652 222 2223332222223221 1 22
Q ss_pred ccHHHHHHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 002817 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551 (876)
Q Consensus 472 ~TIreNI~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaL 551 (876)
.+-.+ +.+++....+...... -...|- -.++.+- .|..-.......||++.++|++.++| |||+
T Consensus 87 ~~~~~---------s~~~~~~~~~~~~~~~-~~~~~i---~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal 150 (199)
T 2f9l_A 87 IAKHL---------TYENVERWLKELRDHA-DSNIVI---MLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TSAL 150 (199)
T ss_dssp TTCHH---------HHHTHHHHHHHHHHHS-CTTCEE---EEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred CcCHH---------HHHHHHHHHHHHHHhc-CCCCeE---EEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--EeCC
Confidence 11111 1111111111000000 000010 0111110 11110011245699999999999999 9999
Q ss_pred CHHHHHHHHHHHHH
Q 002817 552 DAESENSVQEALDR 565 (876)
Q Consensus 552 D~~te~~i~~~l~~ 565 (876)
|.+.-..+.+.|.+
T Consensus 151 ~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 151 DSTNVEEAFKNILT 164 (199)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99987777666644
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.36 E-value=1.7e-08 Score=102.21 Aligned_cols=52 Identities=33% Similarity=0.504 Sum_probs=46.1
Q ss_pred CccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCeeCC
Q 002817 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI--LLDGNNIK 449 (876)
Q Consensus 397 ~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I--~idG~di~ 449 (876)
....+..++..++|++++|+|||||||||++++|.+.+. ..|.+ .+||.+++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 346788899999999999999999999999999999998 78988 89987654
No 185
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.36 E-value=5.1e-08 Score=102.19 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=35.8
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEecC---CCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 381 HIEFKDV-SFCYPSRPDVAIFDKFCLDIPA---GKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 381 ~I~~~~v-sf~y~~~~~~~vL~~isl~i~~---G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++++|+ +|+|++ +.++|+|+||+|++ |+.++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35699999999999 9999999999999999999999865
No 186
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.35 E-value=1.1e-07 Score=105.51 Aligned_cols=141 Identities=15% Similarity=0.278 Sum_probs=82.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-----------CCccEEEECCeeCCCCCHHHHhcceEEEeccCCC----ccccHH-
Q 002817 412 IVALVGGSGSGKSTVISLIERFYE-----------PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL----FATTIR- 475 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~-----------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L----f~~TIr- 475 (876)
.++|||++|||||||++.|.|... |+.|.|.++|.++. +....|++.|.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999765 67899999997652 23346776664431 333322
Q ss_pred ----HHHHcCCC--CCC---HHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHH----HHH-ccCCCE
Q 002817 476 ----ENILYGKD--DAT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS----RAI-VKNPSI 541 (876)
Q Consensus 476 ----eNI~~g~~--~~~---~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiA----RAl-~~~p~I 541 (876)
|++.+--+ +.. ++++....+...... +...| --.|+.+--.+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 11222111 111 111111111111000 01122 1122444445788899988877 776 445555
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh
Q 002817 542 LLLDEATSALDAESENSVQEALDRV 566 (876)
Q Consensus 542 llLDE~tSaLD~~te~~i~~~l~~~ 566 (876)
+|+||+|.+.-..+.+.|.+.
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHH
Confidence 899999999877777777654
No 187
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.35 E-value=4.4e-08 Score=97.42 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=47.8
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCe--eCCCCCH----HHHhcceEEEeccC
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN--NIKGLDL----KWLRQQIGLVNQEP 467 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~--di~~~~~----~~lr~~i~~V~Q~~ 467 (876)
+++++++.+| +++|+||||||||||+.+|.+...+..|...-.+. ++-.... ...+..|.++.|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6789999999 99999999999999999999988887765433221 1111110 02345799999986
No 188
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.34 E-value=1.3e-08 Score=116.95 Aligned_cols=127 Identities=19% Similarity=0.239 Sum_probs=93.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCC-Ccc-ccHH
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA-LFA-TTIR 475 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~-Lf~-~TIr 475 (876)
.+++++++++++| +.|+||+|+|||||+++|.+... .|.+.++|.++.+......++++..++|++. .+. -.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999 99999999999999999999885 7899999999877666666777888888874 333 3556
Q ss_pred HHH-HcCCCCC-----CHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 002817 476 ENI-LYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (876)
Q Consensus 476 eNI-~~g~~~~-----~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tS 549 (876)
|+| .++.... ..++..+.. ..++. .|||||+|+..+++|...+|++ ||||.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 777 4443211 122222211 11111 2678899999999999999987 899886
Q ss_pred C
Q 002817 550 A 550 (876)
Q Consensus 550 a 550 (876)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 4
No 189
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.32 E-value=2.1e-07 Score=94.23 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=40.1
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccC
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~ 467 (876)
++|++|++++|+||+||||||++++|.+++.|+.| +.+ +...+... ...+..++|++|++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~ 60 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTR 60 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCH
Confidence 46899999999999999999999999999977666 222 22222221 11223477777765
No 190
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.30 E-value=9.4e-08 Score=96.78 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=43.3
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-HhcceEEEeccCC
Q 002817 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQIGLVNQEPA 468 (876)
Q Consensus 404 sl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~i~~V~Q~~~ 468 (876)
.++.++|+.++|+||+||||||++++|.+.+ |.+.+||.++.. ... .+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcc
Confidence 3667899999999999999999999999987 899999987752 222 2235678888653
No 191
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=2.2e-07 Score=93.92 Aligned_cols=45 Identities=20% Similarity=0.063 Sum_probs=25.1
Q ss_pred ECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 390 CYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 390 ~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+||+++..+.++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 566666778999999999999999999999999999999999876
No 192
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.27 E-value=2.3e-07 Score=100.92 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=57.3
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCH----HHH-----hcceEEE-eccCC
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWL-----RQQIGLV-NQEPA 468 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~----~~l-----r~~i~~V-~Q~~~ 468 (876)
+++++|++++|+.++++|++|+||||++..|.+.+.+..|+|.+.+.|+..... ..| +..+.++ +|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 468889999999999999999999999999999999999999999888765431 344 6678999 66543
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.20 E-value=5.6e-07 Score=91.32 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhh---hhcCEEEEEe
Q 002817 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI---RNADVIAVVQ 592 (876)
Q Consensus 521 LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i---~~aD~Iivl~ 592 (876)
.++|+.+|-.+++.++.+|+.+-.+ .+.+++...+.+.+.+... ++.++|+-+|.+... +.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4788999999999999988754433 3355666666665555443 356888888877653 5699999986
No 194
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.16 E-value=3.8e-06 Score=92.95 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCCeEEEEc--CCc
Q 002817 519 IQLSGGQKQRIAISRAIVKNPSILLLD-EATSALDAESENSVQEALDRVMVGRTTVVVA--HRL 579 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p~IllLD-E~tSaLD~~te~~i~~~l~~~~~~~T~I~It--Hrl 579 (876)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++++|+|. |++
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 468999999887 66666778889999 9999999998777766666655578888888 554
No 195
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.15 E-value=2.1e-07 Score=101.48 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=50.0
Q ss_pred CcccEEEEeEEEECCCCCCCcccc--------------ceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 378 LSGHIEFKDVSFCYPSRPDVAIFD--------------KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 378 ~~~~I~~~~vsf~y~~~~~~~vL~--------------~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
..+.|+|+|++|.||.. +.+|+ |+++.+.+||+++|+||+|+|||||+++|.++..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 35689999999999853 46788 8999999999999999999999999999999763
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.13 E-value=7.5e-08 Score=104.37 Aligned_cols=124 Identities=14% Similarity=0.211 Sum_probs=72.9
Q ss_pred ccccceeEEecCCC------EEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCeeCCCCCHHHHhcceEEEeccCCC
Q 002817 398 AIFDKFCLDIPAGK------IVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL 469 (876)
Q Consensus 398 ~vL~~isl~i~~G~------~vaiVG~sGsGKSTll~lL~~~~~p--~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~L 469 (876)
..|++++..+.+++ ++||+|||||||||++++|.+++++ ++|. ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 45777777777776 8999999999999999999999874 4443 6667777766
Q ss_pred ccccHHHHH----HcCCCCC-CHHHHHHHHHHHhhhhhHhcCchhhh-hhhcCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 002817 470 FATTIRENI----LYGKDDA-TMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543 (876)
Q Consensus 470 f~~TIreNI----~~g~~~~-~~~~v~~a~~~a~~~~~i~~lp~G~~-T~vGe~G~~LSGGQkQRIaiARAl~~~p~Ill 543 (876)
.+....+.. .+|.|+. +.+...+. +..+..|.+ ..+ -..|-+..+|+.-+...+..|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~~~---------L~~L~~g~~~v~~----P~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLLRV---------LNAIKSGQRNVRI----PVYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHHHH---------HHHHHTTCSSEEE----EEEETTTTEEEEEEEEEECSCSEEE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHHHH---------HHhhhcccccccc----chhhhhccccccCceeeccCCCEEE
Confidence 554444332 2444432 33333332 222323320 000 0111222233322334567899999
Q ss_pred EeCCCCCCCH
Q 002817 544 LDEATSALDA 553 (876)
Q Consensus 544 LDE~tSaLD~ 553 (876)
+|-+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9988775543
No 197
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.12 E-value=2.2e-06 Score=104.28 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhcCC-CeEEE-EcCCchhhh
Q 002817 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATS-ALDAESENSVQEALDRVMVG-RTTVV-VAHRLSTIR 583 (876)
Q Consensus 519 ~~LSGGQkQRIaiARAl~~~p~IllLDE~tS-aLD~~te~~i~~~l~~~~~~-~T~I~-ItHrls~i~ 583 (876)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+....++ +++++ .||....+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 4568999999999999999999999999997 89988665555555554444 55555 489876654
No 198
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=1.4e-05 Score=87.83 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=44.0
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCeeCCCCCHHHHhcceEEEeccC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDGNNIKGLDLKWLRQQIGLVNQEP 467 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I-~idG~di~~~~~~~lr~~i~~V~Q~~ 467 (876)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ ++++.+.. +. ...+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhh
Confidence 488999999999999999999999999988777765 66664322 22 2445566666553
No 199
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.06 E-value=1.4e-07 Score=97.87 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=49.3
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCC------CHHH----HhcceEEEeccCCCcc
Q 002817 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------DLKW----LRQQIGLVNQEPALFA 471 (876)
Q Consensus 403 isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~------~~~~----lr~~i~~V~Q~~~Lf~ 471 (876)
-+.+.++|++++|+|++||||||++++|.+. .|+|.++|.|...+ .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3345689999999999999999999999998 78899999876432 1211 2456788888765543
No 200
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.06 E-value=9.4e-06 Score=91.16 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=93.3
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHH-HhcceEE
Q 002817 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQIGL 462 (876)
Q Consensus 384 ~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~-lr~~i~~ 462 (876)
.++++..|+... ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-...+ |+.. +
T Consensus 79 ~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-~- 149 (425)
T 2ffh_A 79 YEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-G- 149 (425)
T ss_dssp HHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-H-
T ss_pred HHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-c-
Confidence 344555664221 567777 89999999999999999999999999999999999888776533322 2210 0
Q ss_pred EeccCCCccccHHHHHHc-C-CCCCCHHHH-HHHHHHHhhhhhHhcCchhhhhhhcCCCCCC---CHHHHHHHHHHHHHc
Q 002817 463 VNQEPALFATTIRENILY-G-KDDATMEEI-TRAAKLSEAMSFISNLPERFETQVGERGIQL---SGGQKQRIAISRAIV 536 (876)
Q Consensus 463 V~Q~~~Lf~~TIreNI~~-g-~~~~~~~~v-~~a~~~a~~~~~i~~lp~G~~T~vGe~G~~L---SGGQkQRIaiARAl~ 536 (876)
=+.|+-+ . .+..+..++ .++.+.+. .++||..|=+-+..+ .....+..+++|++.
T Consensus 150 -----------~~~gv~v~~~~~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 150 -----------EKVGVPVLEVMDGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp -----------HHHTCCEEECCTTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred -----------ccCCccEEecCCCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 0111110 0 112233444 22222221 245555443332233 234667778889886
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcC
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAH 577 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItH 577 (876)
.++-+|++| ++++.|+... + +.+... -+.+-|++||
T Consensus 211 pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred CceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 666677777 5666555422 1 222221 2457777776
No 201
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.05 E-value=2.3e-06 Score=93.44 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=26.0
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-+++|+.+.|.||+||||||++..+....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999998887653
No 202
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.99 E-value=1.8e-06 Score=91.19 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEEeC
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl~~ 593 (876)
|++|||||..+|++++||||| |.++...+ ++....|+|+++++|..+....+|++++|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 899999999999999999999 98875443 3334468999999999998888999988754
No 203
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.97 E-value=2.1e-06 Score=100.31 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=42.8
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG 445 (876)
.+++++++++ +|+.+.++||+||||||++++|.+...+..|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4678888888 8999999999999999999999999999889887777
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.96 E-value=1e-07 Score=96.27 Aligned_cols=33 Identities=39% Similarity=0.594 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCee
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN 447 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~d 447 (876)
...++|+|++||||||+.++|.+. |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999985 666676543
No 205
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.87 E-value=2.7e-05 Score=84.79 Aligned_cols=106 Identities=13% Similarity=0.248 Sum_probs=70.8
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHH
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI 478 (876)
-|+.+.--+++|+++.|.|++|+||||++.-+....-. .|. .+.|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g~------------~Vl~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-------DDR------------GVAVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-------TTC------------EEEEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cCC------------eEEEEeC-------------
Confidence 46776667999999999999999999998887755432 121 3555442
Q ss_pred HcCCCCCCHHHHHHHHHHHhhhhhHhcCch-hhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 002817 479 LYGKDDATMEEITRAAKLSEAMSFISNLPE-RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (876)
Q Consensus 479 ~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~-G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSaLD 552 (876)
+.+.+++..-+-.+ ...++. .+.+ | .||++++||++.|...+.+++++|.|+|...+|
T Consensus 83 -----Ems~~ql~~Rlls~-----~~~v~~~~l~~-----g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 -----EMSAEQLALRALSD-----LTSINMHDLES-----G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp -----SSCHHHHHHHHHHH-----HHCCCHHHHHH-----T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred -----CCCHHHHHHHHHHH-----hhCCCHHHHhc-----C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 23445543322111 011111 1111 2 799999999999999999999999999875543
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.86 E-value=1.5e-05 Score=89.60 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI 448 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di 448 (876)
++..++++||+||||||++..|.+.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888887766554
No 207
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.82 E-value=8.2e-05 Score=82.65 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEcCCchhh
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVM----VGRTTVVVAHRLSTI 582 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~----~~~T~I~ItHrls~i 582 (876)
.+|.+++|||+... |......+.+.+.+.. .+.++|++||+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999887 8777666666665433 366788889988543
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.78 E-value=5.5e-06 Score=83.76 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=40.3
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~ 452 (876)
..++|++++|+|++||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 46789999999999999999999999999988898888776654444
No 209
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.78 E-value=5.8e-06 Score=81.33 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=33.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK 449 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~ 449 (876)
++|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 569999999999999999999999875 88999987664
No 210
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.60 E-value=0.00012 Score=78.27 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHhcC-----CCeEEEEcCCchh-----
Q 002817 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAES----------ENSVQEALDRVMV-----GRTTVVVAHRLST----- 581 (876)
Q Consensus 522 SGGQkQRIaiARAl~~~p~IllLDE~tSaLD~~t----------e~~i~~~l~~~~~-----~~T~I~ItHrls~----- 581 (876)
++++++|-.+++|...+|.++++||+.+-.+... ...+...+++... +..+|..|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888888888999999999988766432 1223334443321 2345667887643
Q ss_pred hhhcCEEEEEe
Q 002817 582 IRNADVIAVVQ 592 (876)
Q Consensus 582 i~~aD~Iivl~ 592 (876)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34567665543
No 211
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.60 E-value=0.00032 Score=72.60 Aligned_cols=29 Identities=34% Similarity=0.298 Sum_probs=24.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPLSGE 440 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~~G~ 440 (876)
.++|||++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977666553
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.59 E-value=7.4e-06 Score=80.96 Aligned_cols=41 Identities=41% Similarity=0.531 Sum_probs=34.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCeeCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSG--EILLDGNNIK 449 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G--~I~idG~di~ 449 (876)
++|+.++|+|++||||||++++|.+.+++ .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 6777775443
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=1.8e-05 Score=86.91 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=38.1
Q ss_pred ccccceeEEecCCCE--EEEEcCCCccHHHHHHHHHcCCCCCccE
Q 002817 398 AIFDKFCLDIPAGKI--VALVGGSGSGKSTVISLIERFYEPLSGE 440 (876)
Q Consensus 398 ~vL~~isl~i~~G~~--vaiVG~sGsGKSTll~lL~~~~~p~~G~ 440 (876)
.+++.++..++.|+. +.+.||+|+||||+++.+.+...+..|.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 478899999999998 9999999999999999999988765543
No 214
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.55 E-value=4.6e-05 Score=83.66 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=25.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
-+++|+.+.|.||+||||||++..+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.54 E-value=2.2e-05 Score=95.88 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=29.3
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998754
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.52 E-value=0.0003 Score=73.63 Aligned_cols=45 Identities=29% Similarity=0.450 Sum_probs=30.1
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeC
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI 448 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di 448 (876)
++++++..++| +.|+||+|+||||++++|.+.+... -+.+++.++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 44555555555 8999999999999999999987532 355665443
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.42 E-value=8e-05 Score=84.70 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=44.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccc-cHHHHH
Q 002817 412 IVALVGGSGSGKSTVISLIERFYE------------PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI 478 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~------------p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~-TIreNI 478 (876)
++||||++|+|||||++.|+|... +.+|.+.++|.++.-++..-+|+..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 7789999999987666666666666666666555532 344555
Q ss_pred HcC
Q 002817 479 LYG 481 (876)
Q Consensus 479 ~~g 481 (876)
..+
T Consensus 262 ~~a 264 (439)
T 1mky_A 262 EKA 264 (439)
T ss_dssp HHC
T ss_pred hhC
Confidence 443
No 218
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.41 E-value=0.00014 Score=78.32 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-CCeeCCCCCHHHHhcceEEEeccCC--CccccHHHHHHcCCCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL-DGNNIKGLDLKWLRQQIGLVNQEPA--LFATTIRENILYGKDDA 485 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i-dG~di~~~~~~~lr~~i~~V~Q~~~--Lf~~TIreNI~~g~~~~ 485 (876)
++.++||||++|+|||||++.|+|.- +.+ .+.+-. ..++..+++.|+.. .|-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCC
Confidence 34489999999999999999999863 211 111111 11334677877653 12222 222
Q ss_pred CHHHHHHHHHHHhhhhhHhcCc--hhhhhhhcCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHH
Q 002817 486 TMEEITRAAKLSEAMSFISNLP--ERFETQVGERGIQLSGGQKQRIAISRAIV--KNPSILLLDEATSALDAES-ENSVQ 560 (876)
Q Consensus 486 ~~~~v~~a~~~a~~~~~i~~lp--~G~~T~vGe~G~~LSGGQkQRIaiARAl~--~~p~IllLDE~tSaLD~~t-e~~i~ 560 (876)
.. +-.......-.......+. ++.--.+ +. ..+|+|++ .+++++- ..|.|+++ +-+|... ...+.
T Consensus 67 ~~-~~~~~l~~~~~~~~~~~l~~~D~vl~Vv-d~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 67 HM-EEKRAINRLMNKAASSSIGDVELVIFVV-EG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp CH-HHHHHHHHHHTCCTTSCCCCEEEEEEEE-ET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred Cc-cchhhHHHHHHHHHHHHHhcCCEEEEEE-eC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 20 0011110000000001111 1111111 11 22899987 5566665 67888888 6788765 45555
Q ss_pred HHHHHhc
Q 002817 561 EALDRVM 567 (876)
Q Consensus 561 ~~l~~~~ 567 (876)
+.+.++.
T Consensus 137 ~~l~~l~ 143 (301)
T 1ega_A 137 PHLQFLA 143 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 219
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.41 E-value=0.00013 Score=83.01 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=44.8
Q ss_pred cc-CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhc-CCCeEEEEcCCc-hhhhh-cCEEEE-EeCCeEEEecChh
Q 002817 536 VK-NPSILLLDEATSALDA-ESENSVQEALDRVM-VGRTTVVVAHRL-STIRN-ADVIAV-VQGRKIVKTGSHE 603 (876)
Q Consensus 536 ~~-~p~IllLDE~tSaLD~-~te~~i~~~l~~~~-~~~T~I~ItHrl-s~i~~-aD~Iiv-l~~G~Ive~Gt~~ 603 (876)
++ +|++|++||+..-.+. .+...+...++... .++++|+.||+. ..+.. .+++.- ++.|.+++.+.++
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 35 8999999999887775 46666777776643 568889999984 33322 222222 4567777666553
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.35 E-value=3.2e-05 Score=78.69 Aligned_cols=43 Identities=35% Similarity=0.320 Sum_probs=38.4
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCee
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG--EILLDGNN 447 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G--~I~idG~d 447 (876)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+||.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 55789999999999999999999999999988888 88888643
No 221
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=7.6e-05 Score=82.63 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=27.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLS 438 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~ 438 (876)
+++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999876543
No 222
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.34 E-value=6.1e-05 Score=75.58 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=31.5
Q ss_pred EEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 388 SFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 388 sf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
+|+||+- ..+++++|++.+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4567642 35899999998887 589999999999999999986
No 223
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.33 E-value=3.4e-05 Score=84.72 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=43.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCee
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN 447 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~d 447 (876)
.+++++++++++|..++|+|++|+||||+++.|.+.+.+..|+|.+-+.|
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 47889999999999999999999999999999999998877776654443
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.33 E-value=4e-05 Score=77.43 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=26.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
...+|..++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998774
No 225
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.33 E-value=0.00022 Score=77.28 Aligned_cols=107 Identities=10% Similarity=0.187 Sum_probs=67.5
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHH
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIREN 477 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreN 477 (876)
+.|+++.--+++|+++.|.|++|+||||++.-+..-.-. . | ..+.|++=|
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~------g------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N------D------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T------T------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------C------------CeEEEEECC-----------
Confidence 357777766999999999999999999998877643211 1 1 125554432
Q ss_pred HHcCCCCCCHHHHHHHHHHHhhhhhHhcCchhhhhhhcCCC-CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 002817 478 ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (876)
Q Consensus 478 I~~g~~~~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe~G-~~LSGGQkQRIaiARAl~~~p~IllLDE~tSa 550 (876)
.+.+++.+-+.... ..++- +. + ..| ..||++++||++.|...+.++++++.|+|...
T Consensus 106 -------~s~~~l~~R~~~~~-----~~i~~--~~-l-~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 -------MGKKENIKRLIVTA-----GSINA--QK-I-KAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -------SCHHHHHHHHHHHH-----TTCCH--HH-H-HSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -------CCHHHHHHHHHHHH-----cCCCH--HH-H-hcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 33444433221110 01110 00 0 011 12899999999999999999999999998644
No 226
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.32 E-value=1.5e-05 Score=82.16 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHH---cCCCCCccEE--------EECCeeCCCCC-HHHHhcceEEEe------ccCCCcc
Q 002817 410 GKIVALVGGSGSGKSTVISLIE---RFYEPLSGEI--------LLDGNNIKGLD-LKWLRQQIGLVN------QEPALFA 471 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~---~~~~p~~G~I--------~idG~di~~~~-~~~lr~~i~~V~------Q~~~Lf~ 471 (876)
.-.++|+||+||||||+.+.|. |+...+.|.+ .-.|.|+.+.. ...+.+++.++. |..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 4445556665 23566666543 456666777766 4445555
Q ss_pred ccHHHHH
Q 002817 472 TTIRENI 478 (876)
Q Consensus 472 ~TIreNI 478 (876)
..|.+||
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 5565554
No 227
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.29 E-value=7.2e-05 Score=77.19 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=31.6
Q ss_pred ccceeEEec---CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 002817 400 FDKFCLDIP---AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (876)
Q Consensus 400 L~~isl~i~---~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i 443 (876)
|.+.|++++ +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 555666555 8999999999999999999999999987 666543
No 228
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.25 E-value=0.00029 Score=72.82 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=70.5
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCc-cccHHHHHHcCCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDD 484 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf-~~TIreNI~~g~~~ 484 (876)
.+.+|+.++++||+||||||++.+++.......|. ...+.++.|.|... .-++.+|+......
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 44679999999999999999887765332111111 12467777877654 33677777532210
Q ss_pred CCHHHHHHHHHHHhhhhhHhcCchhhhhhhcC----CCCC---CCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHH
Q 002817 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGE----RGIQ---LSGGQKQRIAISRAIVKNPSILLLDEATS-ALDAESE 556 (876)
Q Consensus 485 ~~~~~v~~a~~~a~~~~~i~~lp~G~~T~vGe----~G~~---LSGGQkQRIaiARAl~~~p~IllLDE~tS-aLD~~te 556 (876)
.- ...-|+...... .+.. -+.|+-.+.. ++-+++-+++++||+=. ++|....
T Consensus 136 ~~------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 136 EP------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp CT------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred cc------------------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHH
Confidence 00 001122111110 1100 2346655553 44689999999999976 4776655
Q ss_pred HHHHHHHHHhcCCC
Q 002817 557 NSVQEALDRVMVGR 570 (876)
Q Consensus 557 ~~i~~~l~~~~~~~ 570 (876)
....+.+....++.
T Consensus 196 ~~~l~~i~~~~~~~ 209 (235)
T 3llm_A 196 LVVLRDVVQAYPEV 209 (235)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHhhCCCC
Confidence 33333343333343
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.00031 Score=70.46 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 230
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.18 E-value=0.00032 Score=76.18 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
++..+.|.||+|+||||+++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
No 231
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.17 E-value=0.00016 Score=70.50 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG 445 (876)
.|+.++|+||+||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 45554
No 232
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.15 E-value=9.8e-05 Score=81.22 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=36.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK 449 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~ 449 (876)
+++..++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357799999999999999999999999998888887766554
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.14 E-value=0.00028 Score=70.13 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=20.9
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
++++++++.++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 688999998877 889999999999999999997
No 234
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.13 E-value=0.00086 Score=72.03 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=31.0
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG 445 (876)
+.++++..+.|.||+|+||||+++.+.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4568899999999999999999999998764 33444443
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.09 E-value=0.0024 Score=70.18 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=28.5
Q ss_pred cccceeEE---ecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 399 IFDKFCLD---IPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 399 vL~~isl~---i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-|+.+ +. +++|+.+.|.|++|||||||+.-+....
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45554 33 8899999999999999999988777554
No 236
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.06 E-value=0.00037 Score=68.06 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 237
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.05 E-value=0.00025 Score=72.85 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999877653
No 238
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.04 E-value=0.0013 Score=69.62 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.9
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++++.-+.|.||+|+||||+++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999875
No 239
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.00 E-value=0.00063 Score=77.62 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhh
Q 002817 524 GQKQRIAISRAIVKNPSILLLDEA-TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (876)
Q Consensus 524 GQkQRIaiARAl~~~p~IllLDE~-tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i 582 (876)
.|++-...++..++++|++|+... +..+.... ..+.+.+++ .++.+|+|.+.....
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 488888899999999998886544 33444443 445555543 578999999887754
No 240
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=4.4e-05 Score=76.67 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|+|++||||||+.++|.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 241
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.89 E-value=0.003 Score=67.67 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~~G~ 440 (876)
..+.++||+|+||||+++.|.+...+..|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 578899999999999999999998776664
No 242
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.00027 Score=77.40 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCch
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls 580 (876)
++.|+++|| .-.++......+.+.+++...+..+|++|++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 677888888888888877655555677777665
No 243
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.83 E-value=0.00064 Score=64.97 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=24.4
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHH
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~ 431 (876)
++.++++.+| ..+|+||+||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555555 89999999999999999987
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.77 E-value=0.00062 Score=67.37 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=26.7
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
No 245
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.76 E-value=0.00024 Score=76.25 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=41.6
Q ss_pred cc-eeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC
Q 002817 401 DK-FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK 449 (876)
Q Consensus 401 ~~-isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~ 449 (876)
++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|+|.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35 777776 9999999999999999999999999988888888776654
No 246
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.72 E-value=0.0052 Score=63.84 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEcCCchh
Q 002817 522 SGGQKQRIAISRAIV---KNPSILLLDEATSALDAESENSVQEALDRVM----VGRTTVVVAHRLST 581 (876)
Q Consensus 522 SGGQkQRIaiARAl~---~~p~IllLDE~tSaLD~~te~~i~~~l~~~~----~~~T~I~ItHrls~ 581 (876)
+.|++.+-.+.|+++ ++|+++|+--..+.++...+ .+.+.+.+.. .++++|+++|....
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ-QAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHH-HHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHH-HHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344666667777774 88988776544445554443 3334444332 26799999997653
No 247
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.67 E-value=3.8e-05 Score=85.17 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhcC--CCeEEEEcCCchhhhhcCE
Q 002817 520 QLSGGQKQRIAISRAIV-KNPSILLLDE---AT------SALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADV 587 (876)
Q Consensus 520 ~LSGGQkQRIaiARAl~-~~p~IllLDE---~t------SaLD~~te~~i~~~l~~~~~--~~T~I~ItHrls~i~~aD~ 587 (876)
.+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|+++.+ +.|+|+++|--..-+-+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 46778889999999885 5999999999 65 68999999999999977655 8999999986434444666
Q ss_pred EEEEeCCeEEEecChhHHhc
Q 002817 588 IAVVQGRKIVKTGSHEELIS 607 (876)
Q Consensus 588 Iivl~~G~Ive~Gt~~eL~~ 607 (876)
+.++++ +++.|+.+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 666654 555666666644
No 248
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.66 E-value=0.00095 Score=73.98 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=35.0
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcC-----------CCCCccEEEECCe
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERF-----------YEPLSGEILLDGN 446 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~-----------~~p~~G~I~idG~ 446 (876)
.++.|.+++|||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5677889999999999999999999998 7788999988764
No 249
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.00053 Score=71.70 Aligned_cols=42 Identities=21% Similarity=0.468 Sum_probs=34.4
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK 449 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~ 449 (876)
..++|..+.++|++||||||+.+.|.+.+. .|.+.+||-+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456678999999999999999999998875 356788886544
No 250
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.63 E-value=0.00064 Score=69.37 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchh
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 581 (876)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 3578999999866 6777777777777655455677778887653
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.00062 Score=67.37 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=33.6
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECC
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDG 445 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I-~idG 445 (876)
+..++|..+.|+|++||||||+.+.|.+.+.+..|.+ .+|+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3456799999999999999999999999888766665 3444
No 252
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.60 E-value=0.0053 Score=58.02 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=25.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
+.+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 456678999999999999999998876543
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.59 E-value=0.00086 Score=65.84 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCee
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNN 447 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~p~---~G~I~idG~d 447 (876)
-..++|+|+|||||||+++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999886543 3677776654
No 254
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.59 E-value=0.0027 Score=69.92 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=30.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCe
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~ 446 (876)
.+|..+.|.||+|+||||+++.+.+........+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999999887654444555543
No 255
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.57 E-value=0.0019 Score=62.24 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 256
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.54 E-value=0.0032 Score=71.45 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=66.3
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeCCCCCHHHHhcceEEEeccCCCccccHHHHH
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~Lf~~TIreNI 478 (876)
-|+.+.--+++|+++.|.|++|+||||++.-+....-... |. .+.|++=|
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~------g~------------~vl~~slE------------ 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE------GV------------GVGIYSLE------------ 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------CC------------CEEEEESS------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC------CC------------eEEEEECC------------
Confidence 4666665689999999999999999999888776543221 11 24444332
Q ss_pred HcCCCCCCHHHHHHHH--HHHhhhhhHhcCchhhhhhhcCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 002817 479 LYGKDDATMEEITRAA--KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (876)
Q Consensus 479 ~~g~~~~~~~~v~~a~--~~a~~~~~i~~lp~G~~T~vGe~G~~LSGGQkQRIaiARAl~~~p~IllLDE~tSa 550 (876)
.+.+++.+-. ...+.. ...+ . . .+|+..+.+|+.-|-..+.+.++++.|+|...
T Consensus 239 ------~~~~~l~~R~~~~~~~i~--~~~l----~-----~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 239 ------MPAAQLTLRMMCSEARID--MNRV----R-----L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp ------SCHHHHHHHHHHHHTTCC--TTTC----C-----G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred ------CCHHHHHHHHHHHHcCCC--HHHH----h-----C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 2334443321 111110 1111 1 1 26999999999988888888899998876443
No 257
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.49 E-value=0.00028 Score=77.91 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=36.1
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 002817 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (876)
Q Consensus 379 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG 445 (876)
.+.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|.+.-.+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456889999888853 35789999876 99999999999999999987666555554443
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.48 E-value=0.0007 Score=67.96 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG 445 (876)
..+++|+|++||||||+.+.|.+.+ |...+|+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 4455554
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.48 E-value=0.013 Score=65.90 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
++..++++|++|+||||++.-|...+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45789999999999999999999887653
No 260
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.0016 Score=64.00 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.40 E-value=0.0078 Score=65.11 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
-+++|+.+.|.||+||||||++.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987775
No 262
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.39 E-value=0.0089 Score=65.72 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..-+.|.||+|+||||+++.+.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999765
No 263
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0043 Score=66.46 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=25.1
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
-+++|..+.|.||+|||||||+..+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999988753
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.27 E-value=0.0018 Score=71.41 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
..+..+.|.||+|+||||+++.+.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999987643
No 265
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.26 E-value=0.014 Score=60.53 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+..-+.|.||+|+||||+++.+.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999999865
No 266
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.18 E-value=0.0023 Score=62.96 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCc
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPLS 438 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~~ 438 (876)
+++|||++|+|||||++.+.+...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 689999999999999999999754433
No 267
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.16 E-value=0.0061 Score=60.33 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCccHHHHH-HHHHcC
Q 002817 409 AGKIVALVGGSGSGKSTVI-SLIERF 433 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll-~lL~~~ 433 (876)
+|+.+.++||.||||||++ +++.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4889999999999999997 555554
No 268
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.13 E-value=0.0083 Score=64.01 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
...+.+.||+|+|||++++.|.+.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999876
No 269
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.11 E-value=0.0048 Score=60.69 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=27.0
Q ss_pred EEEEEcCCCccHHHHHHHHH-cC----CCCCcc----EEEECCe
Q 002817 412 IVALVGGSGSGKSTVISLIE-RF----YEPLSG----EILLDGN 446 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~-~~----~~p~~G----~I~idG~ 446 (876)
+++|+|++|+|||||++.+. +. +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 68999999999999997555 44 667766 5666664
No 270
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.06 E-value=0.0034 Score=63.21 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=23.6
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHH
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIE 431 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~ 431 (876)
+.++++.+| +.+|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445555554 99999999999999999886
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.06 E-value=0.0019 Score=71.42 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=44.9
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchhhhhcCEEEEE
Q 002817 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (876)
Q Consensus 528 RIaiARAl~~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~i~~aD~Iivl 591 (876)
+.+|++||..+|+++++|||| |.++ +..+++....|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 7665 334444445689999999998766667776544
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.04 E-value=0.0032 Score=61.48 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.04 E-value=0.0012 Score=66.66 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=23.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
+++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988754
No 274
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.02 E-value=0.037 Score=59.00 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
++..+.|.||+|+||||+++.+.+.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999998887653
No 275
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.97 E-value=0.0033 Score=62.99 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
.++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 276
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.95 E-value=0.0016 Score=70.72 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.7
Q ss_pred ccccceeEEecCCCE--EEEEcCCCccHHHHHHHHHcCC
Q 002817 398 AIFDKFCLDIPAGKI--VALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 398 ~vL~~isl~i~~G~~--vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.+++++++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 368889999999999 9999999999999999998865
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.90 E-value=0.0033 Score=61.82 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 278
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.90 E-value=0.0071 Score=60.45 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=25.1
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+|+...+.+.||.|+||||++..|.+++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6776789999999999999999999875
No 279
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.88 E-value=0.0037 Score=69.68 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~i 443 (876)
.+..++|+||+||||||+++.|+..+.+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 67789999999999999999999887777787776
No 280
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.88 E-value=0.0038 Score=66.83 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=30.2
Q ss_pred ccccceeEEecCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 398 ~vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
..+++..+.+ .|+-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4578888888 799999999999999999998887
No 281
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.022 Score=56.89 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=28.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCch
Q 002817 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580 (876)
Q Consensus 537 ~~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls 580 (876)
.++.++++||.- .++......+.+.+++...+..+|++|++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368899999964 4566666667777766444445566666543
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.84 E-value=0.0043 Score=66.05 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG 445 (876)
+|..+.|+|||||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987664 36677776
No 283
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.84 E-value=0.032 Score=60.28 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++.-+.|.||+|+|||++++.+.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999876
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0035 Score=60.63 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
.++|+|++||||||+.+.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.79 E-value=0.0039 Score=61.82 Aligned_cols=46 Identities=26% Similarity=0.478 Sum_probs=31.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCeeCCCCCHHHHhcc
Q 002817 412 IVALVGGSGSGKSTVISLIERFYE-------------PLSGEILLDGNNIKGLDLKWLRQQ 459 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~-------------p~~G~I~idG~di~~~~~~~lr~~ 459 (876)
.+.|+||||||||||++.|+..++ |-.|+ +||+|..-++.+...+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 378999999999999999986543 34454 36766555555554444
No 286
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.76 E-value=0.0088 Score=61.02 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC-----------chhhhhcCEEEEEe
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR-----------LSTIRNADVIAVVQ 592 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHr-----------ls~i~~aD~Iivl~ 592 (876)
+++++++||+-- ++.+.-..+ ..+.+ .+.++|++.|+ ...+.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665422222 22333 38899999993 23456799998875
No 287
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.73 E-value=0.0056 Score=61.09 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=24.9
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 288
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.72 E-value=0.0074 Score=66.13 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHc-----------CCCCCccEEEECC
Q 002817 410 GKIVALVGGSGSGKSTVISLIER-----------FYEPLSGEILLDG 445 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~-----------~~~p~~G~I~idG 445 (876)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 3467888888766
No 289
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.70 E-value=0.0048 Score=60.47 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
-+++++|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999976
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.65 E-value=0.0059 Score=60.12 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+|..+.|.|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987553
No 291
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.61 E-value=0.032 Score=61.37 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=24.5
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
-+++|+.+.|.||+|||||||+.-+...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999998776644
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.59 E-value=0.006 Score=59.92 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998655
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.56 E-value=0.0058 Score=60.33 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 294
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.51 E-value=0.0053 Score=59.75 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
..++|+|++||||||++..|.+.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999987754
No 295
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.46 E-value=0.021 Score=53.79 Aligned_cols=28 Identities=25% Similarity=0.158 Sum_probs=23.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+.+.-+.|.||+|+|||++++.|.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4456789999999999999999887643
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.45 E-value=0.0068 Score=58.49 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 002817 412 IVALVGGSGSGKSTVISLI 430 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL 430 (876)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.43 E-value=0.0055 Score=59.98 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998654
No 298
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.41 E-value=0.0077 Score=61.97 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=24.3
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-++|..++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999998744
No 299
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.38 E-value=0.0046 Score=64.81 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=24.8
Q ss_pred cceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 401 ~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++....++| +.|.||+|+||||+++.+.+..
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3344444555 7899999999999999999854
No 300
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.37 E-value=0.0065 Score=60.13 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=24.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998655
No 301
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.27 E-value=0.0092 Score=59.90 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++|..++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998754
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.26 E-value=0.0075 Score=60.44 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987754
No 303
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.25 E-value=0.032 Score=63.14 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=27.5
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
-|+.+.--+++|+++.|.|++|+||||++.-+..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555543589999999999999999999776664
No 304
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.24 E-value=0.051 Score=60.90 Aligned_cols=30 Identities=37% Similarity=0.306 Sum_probs=25.3
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 405 LDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 405 l~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+.-++.+++.|+|++||||||+.+.|...+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999998754
No 305
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.23 E-value=0.035 Score=60.82 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++.-+.|.||+|+||||+++.+.+..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999875
No 306
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.22 E-value=0.0091 Score=60.44 Aligned_cols=24 Identities=54% Similarity=0.656 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHc
Q 002817 409 AGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
++..++|+|++||||||+.+.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 307
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.19 E-value=0.049 Score=70.50 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=28.4
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G 439 (876)
+++|+.+.|.||+|+|||||+..+........|
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 899999999999999999999988876654333
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.18 E-value=0.01 Score=59.70 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.6
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|..++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998754
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.11 E-value=0.0047 Score=61.36 Aligned_cols=29 Identities=38% Similarity=0.627 Sum_probs=25.4
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
..+++..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998765
No 310
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.11 E-value=0.015 Score=59.05 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=18.7
Q ss_pred cCCCE-EEEEcCCCccHHHHHHHHHc
Q 002817 408 PAGKI-VALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 408 ~~G~~-vaiVG~sGsGKSTll~lL~~ 432 (876)
++|+. +.+.|+.|+||||++-.+..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHH
Confidence 35665 77899999999999544443
No 311
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.03 E-value=0.022 Score=54.90 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.5
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999874
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.021 Score=54.58 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.93 E-value=0.012 Score=57.17 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHc
Q 002817 411 KIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~ 432 (876)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 314
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.91 E-value=0.011 Score=58.64 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999754
No 315
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.91 E-value=0.012 Score=64.77 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++|||++|+|||||+++|.|..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999873
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.89 E-value=0.011 Score=57.43 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.88 E-value=0.011 Score=61.49 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|+||+||||||+.+.|.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998765
No 318
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.87 E-value=0.049 Score=59.64 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchh
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 581 (876)
++.++++||+- .++......+.+.+++...+...|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999964 46777777777777665445566777776653
No 319
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.85 E-value=0.0095 Score=58.26 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=18.7
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998654
No 320
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.82 E-value=0.077 Score=59.98 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..-+.|.||+|+|||++++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999999876
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.014 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 322
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.71 E-value=0.017 Score=60.37 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 323
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.024 Score=56.62 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.66 E-value=0.015 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
.+.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 325
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.65 E-value=0.015 Score=59.39 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++..+.|+|++||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998655
No 326
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.071 Score=59.80 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
-+++-.-+-+.||+|||||++++++.+...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356667799999999999999999998764
No 327
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.64 E-value=0.044 Score=58.97 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCchh
Q 002817 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (876)
Q Consensus 538 ~p~IllLDE~tSaLD~~te~~i~~~l~~~~~~~T~I~ItHrls~ 581 (876)
+++++++||+=.--..+....+.+.+++...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 78999999984432144555666666665566778888888764
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.63 E-value=0.018 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++|..+.|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998765
No 329
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.61 E-value=0.023 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 330
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.61 E-value=0.0074 Score=66.61 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..+.|.||+|+||||+++.+.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999865
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.60 E-value=0.015 Score=57.92 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+...++|+|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998655
No 332
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.57 E-value=0.14 Score=58.48 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=24.6
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++..-+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667779999999999999999998764
No 333
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.55 E-value=0.064 Score=65.08 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.+.++||+|+|||++++.|...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.55 E-value=0.017 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.51 E-value=0.023 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.50 E-value=0.021 Score=56.95 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998755
No 337
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.47 E-value=0.083 Score=56.62 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44678999999999999999998754
No 338
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.47 E-value=0.049 Score=71.44 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=32.5
Q ss_pred Ccccccee--EEecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 397 VAIFDKFC--LDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 397 ~~vL~~is--l~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.+.|+++. .-+++|+.+.++||+|||||||...+.-.-
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688886 579999999999999999999999888543
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.46 E-value=0.014 Score=59.31 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
++..+.|+|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987653
No 340
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.45 E-value=0.035 Score=54.10 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+.=+++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999863
No 341
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.44 E-value=0.019 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 342
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.42 E-value=0.078 Score=57.13 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..-+.|.||+|+|||++++.+....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 343
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.41 E-value=0.026 Score=55.49 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 344
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.40 E-value=0.02 Score=56.65 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987663
No 345
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.019 Score=56.34 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-.++++|++|+|||||++.|.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999764
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.39 E-value=0.022 Score=61.50 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+++..+.|+||+|||||||...|...+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567999999999999999999998763
No 347
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.38 E-value=0.021 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 348
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.37 E-value=0.025 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999975
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.37 E-value=0.017 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 350
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.36 E-value=0.018 Score=60.45 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998743
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.35 E-value=0.016 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997654
No 352
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.35 E-value=0.028 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.32 E-value=0.018 Score=58.00 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997655
No 354
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.32 E-value=0.02 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 355
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.32 E-value=0.032 Score=55.50 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 356
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.31 E-value=0.021 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 357
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.28 E-value=0.021 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 358
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.28 E-value=0.022 Score=54.33 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 359
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.25 E-value=0.021 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.22 E-value=0.023 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.22 E-value=0.02 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.420 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 362
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.21 E-value=0.023 Score=54.06 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 363
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.19 E-value=0.023 Score=54.12 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 364
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.18 E-value=0.13 Score=56.92 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++.-+.|.||+|+|||++++.+....
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 365
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.18 E-value=0.023 Score=54.84 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 366
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.17 E-value=0.023 Score=54.68 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 367
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.16 E-value=0.029 Score=54.69 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 368
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.16 E-value=0.022 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 369
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.14 E-value=0.02 Score=60.34 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++|||++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 370
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.13 E-value=0.019 Score=57.36 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998755
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.11 E-value=0.022 Score=55.89 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
No 372
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.11 E-value=0.027 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-+.++|.|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999997643
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.10 E-value=0.02 Score=59.23 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++-.++|.||+||||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998655
No 374
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.08 E-value=0.022 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
--.++|+|++|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999875
No 375
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.05 E-value=0.15 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
..+.|.||+|+||||+++.+.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987753
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.05 E-value=0.026 Score=56.16 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
-.++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 377
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.04 E-value=0.028 Score=62.09 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=25.9
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHH
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~ 431 (876)
+++..+++.+| ..+|+||+|||||||+.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35667777664 89999999999999999886
No 378
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.04 E-value=0.015 Score=61.88 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++-.++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 379
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.02 E-value=0.027 Score=54.07 Aligned_cols=23 Identities=48% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 380
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.01 E-value=0.024 Score=54.65 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 381
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.00 E-value=0.027 Score=55.20 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=22.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
+++|+|++|+|||||++.+.+.+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
No 382
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.99 E-value=0.024 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998754
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.99 E-value=0.027 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 384
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.17 Score=56.67 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.2
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
-+++..=+-+.||+|||||++++++.+...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345566699999999999999999998753
No 385
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.92 E-value=0.028 Score=59.26 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|||||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.89 E-value=0.029 Score=58.59 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998753
No 387
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.87 E-value=0.029 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 388
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.82 E-value=0.045 Score=52.94 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 389
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.81 E-value=0.21 Score=57.30 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.8
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
|+.+.--+++|+++.|.|++|+||||++.-+..-.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 55543358999999999999999999977666443
No 390
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.81 E-value=0.029 Score=54.73 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 391
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.79 E-value=0.039 Score=54.82 Aligned_cols=35 Identities=29% Similarity=0.258 Sum_probs=28.6
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++..-+.+ .|..+.|+||||||||||...|..-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 566666665 58899999999999999999887643
No 392
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.78 E-value=0.033 Score=53.66 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 393
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.78 E-value=0.028 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999874
No 394
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.78 E-value=0.031 Score=53.05 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 395
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.77 E-value=0.028 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-.++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997744
No 396
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.039 Score=54.27 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 397
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.75 E-value=0.029 Score=53.95 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.73 E-value=0.031 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHc
Q 002817 411 KIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~ 432 (876)
-+++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 399
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.73 E-value=0.052 Score=58.00 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 002817 413 VALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 413 vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+.+.||+|+||||+++.+.+.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 400
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.72 E-value=0.037 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHc
Q 002817 411 KIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~ 432 (876)
-+++|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999987
No 401
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.71 E-value=0.035 Score=59.25 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+..++|+||||||||||...|...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 402
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.032 Score=53.86 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 403
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.65 E-value=0.032 Score=59.70 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999974
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.64 E-value=0.026 Score=57.08 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+|..+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 405
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.14 Score=57.29 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=25.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
-+++..-+-+.||+|||||++++++.+...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 466677799999999999999999998754
No 406
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.05 Score=53.48 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
.++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999986
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.60 E-value=0.033 Score=58.94 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHc
Q 002817 410 GKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
...++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 408
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.59 E-value=0.035 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 409
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.55 E-value=0.035 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 410
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.53 E-value=0.034 Score=57.85 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++|+|++|+|||||++.|++.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 411
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.53 E-value=0.035 Score=54.28 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 412
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.50 E-value=0.0048 Score=75.26 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=35.9
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCeeC
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI 448 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G~I~idG~di 448 (876)
..++.+++|+.+.++||+|||||||+++|.+... .+-+.+++.++
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 3467789999999999999999999999999874 34455555433
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.46 E-value=0.037 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999999853
No 414
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.46 E-value=0.043 Score=55.58 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=26.4
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
++|.++++-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999987765
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.44 E-value=0.054 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 416
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.40 E-value=0.048 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 417
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.39 E-value=0.036 Score=53.85 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 418
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.38 E-value=0.037 Score=59.35 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+|||+|++|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999974
No 419
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.36 E-value=0.039 Score=54.02 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.35 E-value=0.037 Score=56.58 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=22.4
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
.+|.+++|-|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987664
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.32 E-value=0.04 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 422
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.18 Score=55.76 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=24.2
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+++..-+-+.||+|||||++++++.+...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 44445588999999999999999998754
No 423
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.32 E-value=0.04 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999853
No 424
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.31 E-value=0.025 Score=57.04 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-+++|+|++|+|||||++.|.+.-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999753
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.30 E-value=0.063 Score=52.73 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 426
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.30 E-value=0.02 Score=64.50 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=31.6
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~~p~~G 439 (876)
+++.+ ..+-+|++++|+|++|+|||||++.|.+......|
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 34444 57779999999999999999999999876544334
No 427
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.27 E-value=0.04 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 428
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.22 E-value=0.04 Score=58.02 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 429
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.22 E-value=0.043 Score=53.72 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 430
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.21 E-value=0.027 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHc
Q 002817 409 AGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999873
No 431
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.21 E-value=0.038 Score=59.78 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
..++|+|||||||||+...|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 432
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.17 E-value=0.042 Score=55.13 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++++|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999754
No 433
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.12 E-value=0.046 Score=54.12 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 434
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.09 E-value=0.056 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 435
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.025 Score=56.43 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=23.9
Q ss_pred ccceeEEecCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 400 L~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
..|+.|.-.+--+++++|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3444444333447999999999999999999874
No 436
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.08 E-value=0.04 Score=55.59 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998765
No 437
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.08 E-value=0.045 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|||++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 438
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.07 E-value=0.046 Score=52.97 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 439
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.05 E-value=0.043 Score=54.39 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
=+++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 37899999999999999999874
No 440
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.05 E-value=0.048 Score=57.02 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~~G~ 440 (876)
.++++||.+|+|||||++.|.|......|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876654443
No 441
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.04 E-value=0.044 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
-+++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999874
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.03 E-value=0.043 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
++..+.|+|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 443
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.02 E-value=0.39 Score=63.12 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=26.2
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
+++|+.+.|.||+|+|||||+.-+......
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~ 409 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 409 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998877765543
No 444
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.01 E-value=0.048 Score=56.89 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999743
No 445
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.01 E-value=0.054 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
=+++++|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999853
No 446
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.00 E-value=0.05 Score=54.99 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
.+|.++++-|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999877654
No 447
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.98 E-value=0.2 Score=53.45 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.7
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
+.+..+.|.||+|+|||++++.|....+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 45677889999999999999999986543
No 448
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.98 E-value=0.044 Score=53.91 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.++|+|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 449
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.97 E-value=0.048 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 450
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.046 Score=53.65 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 451
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.93 E-value=0.051 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
+++++|++|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7899999999999999999886543
No 452
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.91 E-value=0.037 Score=56.15 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=25.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+.++...+.|+||.||||+|..+.|...|.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456677899999999999999999997763
No 453
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.90 E-value=0.046 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|||++|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 454
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.89 E-value=0.048 Score=56.91 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++++|++|+|||||++.|++.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999743
No 455
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.88 E-value=0.055 Score=55.60 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
+|.+++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999877653
No 456
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.05 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHc
Q 002817 410 GKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999985
No 457
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.86 E-value=0.05 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 458
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.85 E-value=0.053 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998655
No 459
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.85 E-value=0.049 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 460
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.82 E-value=0.059 Score=52.25 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+.+..+.|+||+|+||||+++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4457799999999999999999988753
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.82 E-value=0.058 Score=54.51 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987765
No 462
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.81 E-value=0.051 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
=.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999853
No 463
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.77 E-value=0.053 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
.=+++|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999999864
No 464
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.77 E-value=0.053 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 465
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.76 E-value=0.054 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 466
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.76 E-value=0.046 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.76 E-value=0.053 Score=57.71 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
...+.|+||||||||||...|...++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987653
No 468
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.75 E-value=0.058 Score=54.89 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=25.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
.+|.++++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987664
No 469
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.22 Score=55.96 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=25.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
-+++-.-+-+.||+|||||++++++.+...
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 456677799999999999999999998754
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.73 E-value=0.051 Score=56.95 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|+|||||++.|.+.-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 471
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.73 E-value=0.051 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-.++|+|++|+|||||++.|.+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998764
No 472
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.69 E-value=0.44 Score=53.47 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
+...++++|++|+||||+..-|...+.-.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999998766543
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.67 E-value=0.052 Score=55.78 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
+|..++|.|+.||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998764
No 474
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.67 E-value=0.043 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998654
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.65 E-value=0.053 Score=58.28 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
..+.|+||+||||||+...|...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998764
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.60 E-value=0.04 Score=57.49 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.7
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 407 IPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 407 i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
.++|.+++|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999998763
No 477
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.59 E-value=0.048 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
No 478
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.58 E-value=0.058 Score=54.16 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 479
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.33 Score=53.95 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=25.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 406 ~i~~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
-+++..-+-+.||+|||||++++++.+...
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 355666799999999999999999998754
No 480
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.52 E-value=0.061 Score=52.66 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988875
No 481
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.51 E-value=0.063 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 482
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.51 E-value=0.053 Score=57.46 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
.++|||++|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 483
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.48 E-value=0.077 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-+++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998643
No 484
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.44 E-value=0.065 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
=+++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999853
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.42 E-value=0.083 Score=51.16 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=26.5
Q ss_pred cccceeEEecCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 399 vL~~isl~i~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
.++..-+.+ .|.-+.|.|+||+||||+...|..
T Consensus 6 ~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555554 588999999999999999988875
No 486
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.40 E-value=0.065 Score=57.38 Aligned_cols=27 Identities=44% Similarity=0.602 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 002817 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (876)
Q Consensus 409 ~G~~vaiVG~sGsGKSTll~lL~~~~~ 435 (876)
++-+++++|++|+|||||++.+.+-+.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~ 28 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYS 28 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 456899999999999999999887643
No 487
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.37 E-value=0.043 Score=53.21 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=9.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 002817 412 IVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~ 432 (876)
+++|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 488
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.37 E-value=0.061 Score=53.34 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 489
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.34 E-value=0.096 Score=52.09 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHc
Q 002817 410 GKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34789999999999999988874
No 490
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.27 E-value=0.09 Score=52.82 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999998864
No 491
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.23 E-value=0.06 Score=53.03 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.4
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHc
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIER 432 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~ 432 (876)
++.=+++|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999874
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.14 E-value=0.084 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 002817 412 IVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
+++|||++|+|||||++.+.+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 493
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.071 Score=52.31 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 002817 412 IVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 412 ~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 494
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.02 E-value=0.43 Score=61.88 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=28.2
Q ss_pred cccceeEE---ecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 399 IFDKFCLD---IPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 399 vL~~isl~---i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
-|+.+ +. +++|+.+-|.||+|||||||+.-++...
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555 34 8999999999999999999987776543
No 495
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.96 E-value=0.21 Score=61.29 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=27.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECC
Q 002817 411 KIVALVGGSGSGKSTVISLIERFYEPLSG-EILLDG 445 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~~~p~~G-~I~idG 445 (876)
..+.|+||+|+|||++++.|........+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 36889999999999999999988755333 345554
No 496
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.93 E-value=0.042 Score=60.09 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=29.1
Q ss_pred ceeEEecCCCEEEEEcCCCccHHHHHHHHHcCC
Q 002817 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (876)
Q Consensus 402 ~isl~i~~G~~vaiVG~sGsGKSTll~lL~~~~ 434 (876)
|.=+.|-+||+.+|+|++|+|||||++.|.+..
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 455688999999999999999999999888753
No 497
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.92 E-value=0.077 Score=56.35 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 002817 411 KIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 411 ~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
..+.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 498
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.91 E-value=0.091 Score=55.55 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCC
Q 002817 410 GKIVALVGGSGSGKSTVISLIERFYEPL 437 (876)
Q Consensus 410 G~~vaiVG~sGsGKSTll~lL~~~~~p~ 437 (876)
+-.+++||.+|+|||||+|.|.|.....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEecCCCchHHHHHHHhcCceee
Confidence 3479999999999999999999876433
No 499
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.88 E-value=0.073 Score=51.45 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~~~p 436 (876)
+.+..+.|+||+|+||||+++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999887643
No 500
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.79 E-value=0.074 Score=60.38 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.7
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHHcC
Q 002817 408 PAGKIVALVGGSGSGKSTVISLIERF 433 (876)
Q Consensus 408 ~~G~~vaiVG~sGsGKSTll~lL~~~ 433 (876)
+.|=+++|||++|+|||||++.|.+.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999874
Done!