Query 002818
Match_columns 876
No_of_seqs 315 out of 2385
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 11:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 1E-146 2E-151 1313.9 83.9 845 5-872 26-881 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1E-122 3E-127 1110.3 83.8 795 13-856 13-830 (831)
3 COG0308 PepN Aminopeptidase N 100.0 3.1E-90 6.8E-95 828.4 67.5 817 9-859 12-857 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 5.6E-82 1.2E-86 745.7 75.2 708 11-761 4-764 (863)
5 PRK14015 pepN aminopeptidase N 100.0 1.5E-81 3.2E-86 744.6 75.1 707 11-760 16-773 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 1E-74 2.2E-79 668.0 40.6 427 9-465 6-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 2.2E-72 4.7E-77 632.6 37.1 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 4.1E-54 8.9E-59 455.2 27.7 433 11-463 13-460 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 5.1E-50 1.1E-54 439.5 29.0 313 532-849 1-324 (324)
10 KOG1932 TATA binding protein a 100.0 4.6E-37 9.9E-42 348.5 35.5 428 16-465 27-506 (1180)
11 COG3975 Predicted protease wit 99.3 1E-10 2.2E-15 126.1 20.5 237 231-475 181-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.1 1E-10 2.2E-15 109.1 6.9 106 299-418 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.7 0.002 4.2E-08 69.3 17.3 143 298-455 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.1 0.00028 6E-09 63.6 2.8 43 301-343 4-57 (122)
15 PF11940 DUF3458: Domain of un 96.6 0.29 6.3E-06 53.6 21.4 301 468-801 6-343 (367)
16 PF04450 BSP: Peptidase of pla 96.4 0.048 1E-06 54.5 12.7 129 278-450 75-204 (205)
17 PF07607 DUF1570: Protein of u 95.8 0.0058 1.3E-07 55.7 2.4 39 303-341 3-43 (128)
18 PF10026 DUF2268: Predicted Zn 92.4 0.48 1E-05 47.4 7.9 99 240-345 5-113 (195)
19 PRK04860 hypothetical protein; 89.2 1 2.2E-05 43.1 6.4 70 236-314 5-76 (160)
20 smart00638 LPD_N Lipoprotein N 89.1 6.4 0.00014 46.8 14.7 198 549-763 356-560 (574)
21 COG4324 Predicted aminopeptida 88.0 2.2 4.8E-05 43.0 8.0 113 226-344 73-234 (376)
22 PF10023 DUF2265: Predicted am 86.6 2.7 5.8E-05 45.0 8.2 114 225-344 40-202 (337)
23 PF01863 DUF45: Protein of unk 84.1 5.9 0.00013 39.9 9.3 92 235-353 109-200 (205)
24 smart00731 SprT SprT homologue 81.4 1.7 3.7E-05 41.1 3.8 65 242-315 5-73 (146)
25 PF03272 Enhancin: Viral enhan 80.2 90 0.0019 38.2 18.5 129 303-451 238-377 (775)
26 PF12725 DUF3810: Protein of u 73.8 3.5 7.7E-05 44.5 4.0 31 301-343 196-226 (318)
27 PF01347 Vitellogenin_N: Lipop 72.8 37 0.00079 40.8 12.9 195 551-762 396-603 (618)
28 PF12315 DUF3633: Protein of u 65.5 9.5 0.00021 37.7 4.5 41 301-343 93-133 (212)
29 COG4783 Putative Zn-dependent 60.0 11 0.00024 42.0 4.4 55 256-315 90-144 (484)
30 PF01447 Peptidase_M4: Thermol 59.2 16 0.00035 34.6 4.8 74 231-312 67-146 (150)
31 PF04234 CopC: CopC domain; I 58.3 52 0.0011 28.5 7.6 62 45-109 18-82 (97)
32 PF10263 SprT-like: SprT-like 54.7 26 0.00057 33.4 5.7 19 297-315 56-74 (157)
33 PRK04351 hypothetical protein; 54.5 15 0.00033 34.7 3.8 16 298-313 58-73 (149)
34 PF10989 DUF2808: Protein of u 54.3 37 0.00081 32.0 6.4 48 72-121 75-123 (146)
35 PF06114 DUF955: Domain of unk 51.8 16 0.00034 32.7 3.5 19 300-318 41-59 (122)
36 PF13646 HEAT_2: HEAT repeats; 51.7 27 0.00059 29.2 4.7 75 659-745 14-88 (88)
37 PF01435 Peptidase_M48: Peptid 51.1 23 0.0005 36.0 4.9 70 242-320 35-108 (226)
38 COG1451 Predicted metal-depend 49.9 38 0.00083 34.5 6.1 93 234-353 119-211 (223)
39 COG2372 CopC Uncharacterized p 45.6 61 0.0013 29.5 5.9 60 47-109 47-110 (127)
40 cd04269 ZnMc_adamalysin_II_lik 44.7 75 0.0016 31.5 7.4 14 300-313 130-143 (194)
41 PF14675 FANCI_S1: FANCI solen 43.0 71 0.0015 32.5 6.7 117 568-688 4-123 (223)
42 PRK03982 heat shock protein Ht 42.8 56 0.0012 34.9 6.4 66 240-316 70-140 (288)
43 COG0501 HtpX Zn-dependent prot 42.5 38 0.00082 36.3 5.2 68 244-319 105-175 (302)
44 COG2719 SpoVR Uncharacterized 42.0 1.5E+02 0.0034 32.8 9.3 51 303-359 251-301 (495)
45 COG0362 Gnd 6-phosphogluconate 40.8 1.6E+02 0.0035 32.5 9.1 117 566-703 312-443 (473)
46 PF04597 Ribophorin_I: Ribopho 40.4 2.6E+02 0.0055 31.8 11.4 86 24-109 10-103 (432)
47 PRK02870 heat shock protein Ht 40.3 58 0.0013 35.5 6.0 64 241-312 118-184 (336)
48 COG3227 LasB Zinc metalloprote 38.9 32 0.00069 38.4 3.7 108 227-341 265-378 (507)
49 PF13699 DUF4157: Domain of un 38.9 51 0.0011 27.4 4.2 66 243-313 6-73 (79)
50 PRK01345 heat shock protein Ht 38.9 67 0.0015 34.8 6.3 68 240-316 69-139 (317)
51 PRK03001 M48 family peptidase; 37.0 60 0.0013 34.5 5.5 68 240-316 69-139 (283)
52 PRK03072 heat shock protein Ht 36.6 70 0.0015 34.1 5.9 69 239-316 71-142 (288)
53 PHA02456 zinc metallopeptidase 36.4 24 0.00052 30.7 1.8 15 300-314 78-92 (141)
54 PRK05457 heat shock protein Ht 35.7 53 0.0012 34.9 4.8 68 240-316 79-149 (284)
55 PF12174 RST: RCD1-SRO-TAF4 (R 35.1 75 0.0016 25.7 4.4 47 395-442 11-57 (70)
56 PF08325 WLM: WLM domain; Int 34.9 26 0.00057 34.5 2.2 22 296-317 77-98 (186)
57 KOG1991 Nuclear transport rece 34.6 5.5E+02 0.012 31.9 13.0 133 565-703 102-252 (1010)
58 PRK09687 putative lyase; Provi 34.6 5.8E+02 0.013 27.0 15.8 43 717-760 190-232 (280)
59 PF13574 Reprolysin_2: Metallo 34.2 26 0.00057 34.2 2.1 13 301-313 111-123 (173)
60 cd04279 ZnMc_MMP_like_1 Zinc-d 33.4 1.6E+02 0.0035 27.9 7.4 36 219-254 2-40 (156)
61 PF08014 DUF1704: Domain of un 33.3 2.3E+02 0.0049 31.2 9.2 83 243-340 118-213 (349)
62 PRK04897 heat shock protein Ht 33.3 61 0.0013 34.8 4.8 68 240-316 82-152 (298)
63 COG3091 SprT Zn-dependent meta 32.5 75 0.0016 29.8 4.5 67 239-312 6-72 (156)
64 PRK10301 hypothetical protein; 31.3 2.8E+02 0.006 25.3 8.1 26 84-109 84-109 (124)
65 PF10805 DUF2730: Protein of u 30.8 2.3E+02 0.005 25.1 7.2 72 784-857 1-86 (106)
66 PF13402 M60-like: Peptidase M 30.5 1E+02 0.0022 33.2 6.1 107 232-346 144-259 (307)
67 KOG1077 Vesicle coat complex A 30.5 2.3E+02 0.005 33.6 8.7 29 590-618 261-289 (938)
68 PRK01265 heat shock protein Ht 29.9 99 0.0021 33.5 5.7 66 241-315 86-154 (324)
69 PF13688 Reprolysin_5: Metallo 29.7 51 0.0011 32.7 3.4 15 299-313 140-154 (196)
70 PRK02391 heat shock protein Ht 28.0 1.4E+02 0.0031 31.9 6.5 68 240-316 78-148 (296)
71 cd04272 ZnMc_salivary_gland_MP 28.0 1.4E+02 0.0031 30.3 6.3 13 301-313 145-157 (220)
72 PF07539 DRIM: Down-regulated 26.9 3.5E+02 0.0076 25.3 8.1 59 696-762 80-139 (141)
73 PF09836 DUF2063: Uncharacteri 26.7 37 0.0008 29.2 1.5 31 402-432 55-85 (94)
74 PF01431 Peptidase_M13: Peptid 25.9 77 0.0017 31.7 3.9 33 287-319 22-54 (206)
75 KOG3607 Meltrins, fertilins an 25.5 1.6E+02 0.0036 35.6 7.0 81 220-312 242-334 (716)
76 PF01421 Reprolysin: Reprolysi 25.2 86 0.0019 31.2 4.1 15 298-312 128-142 (199)
77 PF14524 Wzt_C: Wzt C-terminal 24.7 2E+02 0.0043 26.3 6.3 25 83-107 83-107 (142)
78 COG2856 Predicted Zn peptidase 24.6 2.4E+02 0.0051 28.6 6.9 40 300-339 71-115 (213)
79 PF09768 Peptidase_M76: Peptid 24.4 2.1E+02 0.0045 27.9 6.2 66 244-321 22-91 (173)
80 PF12069 DUF3549: Protein of u 22.8 3.7E+02 0.008 29.2 8.3 96 664-770 171-267 (340)
81 PF03715 Noc2: Noc2p family; 22.6 1.8E+02 0.004 31.1 6.1 49 823-871 228-284 (299)
82 PF13205 Big_5: Bacterial Ig-l 22.6 5E+02 0.011 22.3 8.3 26 83-108 59-85 (107)
83 PRK09687 putative lyase; Provi 22.1 9.5E+02 0.021 25.4 18.5 156 659-835 105-267 (280)
84 PF13934 ELYS: Nuclear pore co 21.5 4.9E+02 0.011 26.6 8.7 94 696-795 74-170 (226)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-146 Score=1313.90 Aligned_cols=845 Identities=48% Similarity=0.778 Sum_probs=776.5
Q ss_pred CCCCcCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecC
Q 002818 5 KGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEA 84 (876)
Q Consensus 5 ~~~~rLp~~~~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~ 84 (876)
...+|||.+++|+||+|.|.+++....|.|++.|.+.+.++|+.|+||+.++.|.++.+....+................
T Consensus 26 ~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (882)
T KOG1046|consen 26 PNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQE 105 (882)
T ss_pred cccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccccc
Confidence 35789999999999999999999999999999999999999999999999999999998753221111111111111111
Q ss_pred CeEEEEEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeeecc-CCeeeeeeeccCCcCCCCccccccCCCCCceEEEEEE
Q 002818 85 DEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITL 162 (876)
Q Consensus 85 ~~~l~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~t~~ep~~ar~~fPc~Dep~~ka~f~l~i 162 (876)
..+.+.+++++.+| +|+|+|.|.|.+++.+.|||+++|.+ .+..+++++|||||++||++|||||||++||+|+|+|
T Consensus 106 -~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl 184 (882)
T KOG1046|consen 106 -ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTITL 184 (882)
T ss_pred -eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEEE
Confidence 67888888999999 89999999999999999999999987 4666899999999999999999999999999999999
Q ss_pred EeCCCCeEeccCCccce-eecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEcCCccchHHHHHHHHH
Q 002818 163 DVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAV 241 (876)
Q Consensus 163 ~~p~~~~~isng~~~~~-~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (876)
.||++++++|||++... ..++++++++|+.||+||||++||+||+|++.+..+.+|+++++|++|+...+.+++++.+.
T Consensus 185 ~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~ 264 (882)
T KOG1046|consen 185 VHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVAT 264 (882)
T ss_pred EecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHH
Confidence 99999999999999876 55556999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCcc
Q 002818 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (876)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~ 321 (876)
++|++|+++||+|||++|+|+|++|+|..|||||||||+|++..+|+++..++..++++++.+||||+|||||||+|||+
T Consensus 265 ~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~ 344 (882)
T KOG1046|consen 265 KVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMK 344 (882)
T ss_pred HHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHH-HhhhccccCCCCceeeecCCcchhcccccceeechhhHHHH
Q 002818 322 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIR 400 (876)
Q Consensus 322 ~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~ 400 (876)
||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|++.++||+..++.++.++.+.|+.++|.||++|||
T Consensus 345 wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlR 424 (882)
T KOG1046|consen 345 WWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLR 424 (882)
T ss_pred hhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999887776 57899999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCCEEEEEEEeeccCC
Q 002818 401 MLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSSG 480 (876)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~l~Q~rf~~~~ 480 (876)
||+..+|++.|++||+.|+.+|+|+|++++|||++|+...+.|++++|+.|+.|+|||+|+|.++++.++++|+||....
T Consensus 425 ML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~~ 504 (882)
T KOG1046|consen 425 MLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLSDP 504 (882)
T ss_pred HHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhccCC
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999998865
Q ss_pred C--CCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcCHHHHHHHHHH
Q 002818 481 S--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYA 558 (876)
Q Consensus 481 ~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~ 558 (876)
. .....|+||++|.+...+.....++..++..+.++. .+ +||++|.++.|||||+||+++|+.|+++
T Consensus 505 ~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~~~ 573 (882)
T KOG1046|consen 505 DPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLIEQ 573 (882)
T ss_pred CccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHHHH
Confidence 4 334699999999987655445577777777777754 34 6999999999999999999999999999
Q ss_pred HHc-CCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Q 002818 559 IEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFIS 637 (876)
Q Consensus 559 l~~-~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 637 (876)
|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...+..+.. +.. .+.+..++.|+.+
T Consensus 574 l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~ 650 (882)
T KOG1046|consen 574 LKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFVKK 650 (882)
T ss_pred HhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHHHH
Confidence 976 789999999999999999999999999999999999999999999999999998888 444 5688999999999
Q ss_pred HHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCC
Q 002818 638 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASD 717 (876)
Q Consensus 638 l~~~~~~~l~~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~ 717 (876)
++.++++++||.....++ ....+|..++..||..|+++|.+.|.++|.+|+.. ++.||+++|.+|||+++ ++|+
T Consensus 651 l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~---~~g~ 724 (882)
T KOG1046|consen 651 LILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAV---QFGT 724 (882)
T ss_pred HHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHH---HhcC
Confidence 999999999998755444 77899999999999999999999999999999987 67899999998887655 5889
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-CcCccccceeeee-eccc--cHHHHHHHHHHHHH
Q 002818 718 RSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKWLKDNWD 793 (876)
Q Consensus 718 ~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~-~~i~~qd~~~~~~-v~~~--g~~~~~~fl~~n~~ 793 (876)
++.|++++++|+++.+..||..+++||+|+++++.++++|++.++ ..++.||....+. ++.+ |.+++|+|++.||+
T Consensus 725 ~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n~~ 804 (882)
T KOG1046|consen 725 EEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDNWK 804 (882)
T ss_pred HhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887 4699999999988 7766 99999999999999
Q ss_pred HHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHhh
Q 002818 794 HISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKELA 872 (876)
Q Consensus 794 ~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~v~~wl~~~~ 872 (876)
.+.+++++.+.+..++..+++.+.+..+++++++||.........+.+++++|.++.|++|.+++... +.+||.++.
T Consensus 805 ~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~--l~~~l~~~~ 881 (882)
T KOG1046|consen 805 ELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEEN--LTQWLLEAL 881 (882)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHH--HHHHHHHhc
Confidence 99999996688999999999999999999999999999876656899999999999999999999988 999998764
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.3e-122 Score=1110.32 Aligned_cols=795 Identities=23% Similarity=0.323 Sum_probs=665.6
Q ss_pred CceeeEEEEEEEecCCCC--eEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEEEE
Q 002818 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (876)
Q Consensus 13 ~~~p~~Y~l~l~~d~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (876)
.+.+.||+|.|+++.+.. .+.|+++|+|++.++++.|.||+.+++|++|.+++. ..+....++ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999986554 558999999999888999999999999999999651 111222233 346
Q ss_pred EeCCCCCCceEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeeeccCCcCCCCccccccCCCCCceEEEEEEEeCCCCeE
Q 002818 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (876)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~Dep~~ka~f~l~i~~p~~~~~ 170 (876)
.++. |++|.++|+|.|.+.+++.+.|+|+..+..+| ++++.|||||.+||+||||||+|++||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDG--EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCC--eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 77788999999999999999999986544445 37789999999999999999999999999999999999999
Q ss_pred eccCCccceeecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEcCCccch--HHHHHHHHHHHHHHHH
Q 002818 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (876)
Q Consensus 171 isng~~~~~~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (876)
+|||++......++.++++|+.+||||+|++||++|+|..++. ..+|+++++|++|+..+. ++++++.+.++|++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556678899999999999999999999999874 456899999999987654 5789999999999999
Q ss_pred HHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCccccchhhh
Q 002818 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (876)
Q Consensus 249 ~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL 328 (876)
++||+|||++|+|+|++|+|..|||||||+|+|++. +++.+. .+...++.+..+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555544 334566788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhCcchhHHHHHHHHHH-HhhhccccCCCCceeeecCCcchhcccccceeechhhHHHHHHHHhhC
Q 002818 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (876)
Q Consensus 329 ~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG 407 (876)
|||||+|++++++++.+|.+..+..|..... .++..|+..++||+..++.++.++...|+.++|.||++||+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999888888876554 567889999999999888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC--CEEE-EEEEeeccCCCCCC
Q 002818 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE--EKLE-LEQSQFLSSGSPGD 484 (876)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~--~~~~-l~Q~rf~~~~~~~~ 484 (876)
++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+|+|++.. +.+. +.|.+ ++ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 99999999999999999999999999999999999999999999999999999998753 4444 22221 11 12
Q ss_pred CeeEEEEEEEECccccee-----eEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcCHHHHHHHHHHH
Q 002818 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 559 (876)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~l 559 (876)
..|.|||.+....+.... .+++...... ++... ...+. +||++|.++.|||||+||+++|+.|..+|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332211 1333332221 22110 01133 79999999999999999999999999998
Q ss_pred HcCCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HhccCCCcHHHHHHHHHHHH-HHHHHHhccChhHHHHHHHHHHH
Q 002818 560 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFIS 637 (876)
Q Consensus 560 ~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~-~~l~~e~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~ 637 (876)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+..++.. ++.+..++.++..
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 618 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAAL 618 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 53 33799999999999999999999999999955 89999999999999999999 88888744 5678889999988
Q ss_pred HHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCC
Q 002818 638 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASD 717 (876)
Q Consensus 638 l~~~~~~~l~~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~ 717 (876)
++.+.... ++++.+..++. +..++|..|+++|++.++++|..|+.+ ..||||+|..|||+++. ++
T Consensus 619 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~~ 683 (831)
T TIGR02412 619 ACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA----LG 683 (831)
T ss_pred HHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh----cC
Confidence 88764322 23323333333 555899999999999999999998754 36999999999886443 57
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCccccceeeee-eccc-cHHHHHHHHHHHHHH
Q 002818 718 RSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDH 794 (876)
Q Consensus 718 ~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~~-~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~ 794 (876)
..+|+.++++|++++++.+|..++.||||++|++++++.+..++.+ .++.||...++. ++.. +++++|+|+++||+.
T Consensus 684 ~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (831)
T TIGR02412 684 FIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFAN 763 (831)
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999777777665 489999988888 7654 999999999999999
Q ss_pred HHHHhCC-CcchHHHHHHhhc--cCCCHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHH
Q 002818 795 ISKTWGS-GFLITRFISSIVS--PFASYEKVREVEEFFSS--RCKPYIARTLRQSIERVQINAKWVE 856 (876)
Q Consensus 795 i~~~~~~-~~~l~~~i~~~~~--~~~t~~~~~~~~~f~~~--~~~~~~~~~~~~~le~i~~ni~W~~ 856 (876)
|.++++. +..+...+...+. .+++++.++++++||+. +..+...|.+.++++.++.|+++++
T Consensus 764 l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 764 LADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 9999975 4555655554444 88999999999999974 3345889999999999999998875
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-90 Score=828.39 Aligned_cols=817 Identities=30% Similarity=0.471 Sum_probs=655.4
Q ss_pred cCCCCcee-eE--EEEEEEecCC--CCeEEEEEEEEEEE--ECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEE
Q 002818 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (876)
Q Consensus 9 rLp~~~~p-~~--Y~l~l~~d~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~ 81 (876)
.++..+.| .+ |++.|+++.. ..+|+|+++|++.. ..+...|+||+.+|+|.++.+++... .. .+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~---~~ 82 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA---WY 82 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc---cc
Confidence 45555565 66 7777766554 48999999999987 33344599999999999999987311 11 23
Q ss_pred ecCCeEEEEEeCCC--C---CCceEEEEEEEEeeeC-CCCcceEEeeeccCCeeeeeeeccCCcCCCCccccccCCCCCc
Q 002818 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (876)
Q Consensus 82 ~~~~~~l~i~l~~~--L---~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~Dep~~k 155 (876)
..+.+.+.|....+ + .++.+.+.+.+.+... +...|+|++.+.. ..++.||||+.+||+||||+|+|+.|
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 83 RLDGDALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cccCccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33334444443332 2 2346778888887776 6778999876543 67889999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEeccCCccceee-cCCeEEEEEEeCCCCcceEEEEEEeeeeEeecccc---CCeEEEEEEcCCccc
Q 002818 156 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (876)
Q Consensus 156 a~f~l~i~~p~~~~~isng~~~~~~~-~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 231 (876)
|+|+++|+.+++++++|||+++.... .+++++++|..++|||||++|+++|+|..++.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999987633 35689999999999999999999999988875442 479999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHH
Q 002818 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (876)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (876)
.++++++.+.++++||+++||+|||+++ ++|++|+|+.|||||||+++|++.+++.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998877777889999999999999
Q ss_pred HHhcCccCccccchhhhhhHHHHHHHHHHhhhhCc-chhHHHHHHHHHHH-hhhccccCCCCceeeecCCcchhcccccc
Q 002818 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (876)
Q Consensus 312 qWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~~~~~~~~~~f~~ 389 (876)
|||||+||++||+++|||||||+|++++..+.++| .|..+..+...... ++..|+...+||+...+.++.++++.||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888887766554 78889999999999999999999999999
Q ss_pred eeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCC-E
Q 002818 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (876)
Q Consensus 390 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~-~ 468 (876)
++|.||++|+|||+..+|++.|+++|+.|+++|++++++++|||+++++++|+|+..+|..|++|+|+|++.|+..++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEeeccCCCCCCCeeEEEEEEEECcccceeeEEeeccceEEEecccccccccCCCCCCceEEecCCceeEEEEEcC
Q 002818 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (876)
Q Consensus 469 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd 548 (876)
++++|.||...+......|.||+.+.....+......+.+...++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998877334459999999988754432334445555566665421 1112 478899999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhccC-CCcHHHHHHHHHHH-HHHHHHHhccChh
Q 002818 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSE-ETEYTVLSNLITIS-YKIGRIAADARPE 626 (876)
Q Consensus 549 ~~~w~~l~~~l~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~-e~~~~~w~~~~~~l-~~l~~~~~~~~~~ 626 (876)
.+.|..++... ..++..+|+.++.|..++..+|..+...+...+..... +..+..-..++..+ ..|..... .+
T Consensus 551 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 625 (859)
T COG0308 551 DQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFAD---LE 625 (859)
T ss_pred HHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchh---hh
Confidence 99998886653 37889999999999999999999999998886665544 44444444333332 22222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhh
Q 002818 627 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 706 (876)
Q Consensus 627 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy 706 (876)
..+.......+...+.++++....++.. .......+ +-++...+..++..+..+|..+-.. ...++|++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLL-ALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHH-HHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 3455666667777777777665333222 22222222 6778888899999999999988543 3457899998765
Q ss_pred eeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-cCccccceeeee-e-c-cccHH
Q 002818 707 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-V-S-IEGRE 782 (876)
Q Consensus 707 ~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~~-~i~~qd~~~~~~-v-~-~~g~~ 782 (876)
..+..+ .+..+.+..+.+.|..++....+..+..+.+-...+..+.+.|..+..+ .+..|+...... . . .++++
T Consensus 700 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (859)
T COG0308 700 KAYAAA--GNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNE 777 (859)
T ss_pred HHHHHh--cChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchh
Confidence 555432 3334468999999998888899999999999999999999999998876 578888877766 3 3 34999
Q ss_pred HHHHHHHHHHH---HHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 002818 783 TAWKWLKDNWD---HISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIR 859 (876)
Q Consensus 783 ~~~~fl~~n~~---~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~ 859 (876)
++|.|...||+ .+....+++......+-.....++.+..++++++|++....+...+.+.+++++|....++++..+
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~l~~~~~ 857 (859)
T COG0308 778 ARWLYGTFAFENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKLKALERLIREALETIAARERLSKDLA 857 (859)
T ss_pred hHHHHHHHhhhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999998 555555554332222223345778888999999999987655788899999999999988877643
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=5.6e-82 Score=745.67 Aligned_cols=708 Identities=20% Similarity=0.259 Sum_probs=506.0
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEEEE
Q 002818 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (876)
Q Consensus 11 p~~~~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (876)
|+.+...||+|+|+++++...++|+++|+++...+...|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 66788999999999999999999999999998777778999999999999999652 111 2335566678888
Q ss_pred EeCCCCCCceEEEEEEEEeee--CCCCcceEEeeeccCCeeeeeeeccCCcCCCCccccccCCCCCceEEEEEEEeCCC-
Q 002818 91 EFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (876)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~~--~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~Dep~~ka~f~l~i~~p~~- 167 (876)
.. + ++.++|+|.|.+.. +....|+|++.+ ++.|||||.+||++|||+|+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 35789999997654 455789998753 568999999999999999999999999999999996
Q ss_pred C-eEeccCCccce-eecCCeEEEEEEeCCCCcceEEEEEEeeeeEeecc----ccCCeEEEEEEcCCccchHHHHHHHHH
Q 002818 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (876)
Q Consensus 168 ~-~~isng~~~~~-~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (876)
| +++|||+++.. ...+++++++|+.++|||+|++||++|+|+.++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 6 56899987765 44577888999999999999999999999988742 224589999999999889999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCcc
Q 002818 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (876)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~ 321 (876)
++|++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+....+.+..+||||+|||||||+||++
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999988666667778999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHH-HhhhccccCCCCceeeecCCcchhcccccceeechhhHHHH
Q 002818 322 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIR 400 (876)
Q Consensus 322 ~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~ 400 (876)
||+++|||||||+|++..+.....+.......-..... ..+..|+...+||+.. ....+++..|+.++|.||++|||
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLr 381 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIR 381 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHH
Confidence 99999999999999997766555443111000000011 2355577777888764 23456778899999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----C--EEEEEEE
Q 002818 401 MLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQS 474 (876)
Q Consensus 401 mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~--~~~l~Q~ 474 (876)
||+..||++.|+++|+.|+++|++++++++||++++++++|.|+++|+ +|++|+|+|+|+|++++ + +++++|.
T Consensus 382 ML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~ 460 (863)
T TIGR02414 382 MLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQS 460 (863)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999985 89999999999999864 2 4666666
Q ss_pred eeccCCCCCCCeeEEEEEEEECc--ccc-----------eeeEEeeccceEEEecccccccccCCCCCCceEEecCCcee
Q 002818 475 QFLSSGSPGDGQWIVPITLCCGS--YDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (876)
Q Consensus 475 rf~~~~~~~~~~w~iPl~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 541 (876)
+....+......|.|||.+..-+ +.. ...+.++++++++.++++. .. ..+-++.+..-
T Consensus 461 ~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~-------~~--p~~sl~r~fsa 531 (863)
T TIGR02414 461 TPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA-------EK--PVPSLLRGFSA 531 (863)
T ss_pred CCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC-------CC--CeeeecCCCCc
Confidence 54333333456899999986532 211 1235677788888887642 11 35677788888
Q ss_pred EEEEEcCH--HHHHHHHHHHHcCCCChhhHHHHHH-----HHHHHHHcCC-CC-HHHHHHHHHhccC--CCcHHHHHHHH
Q 002818 542 FYRVKYDK--DLAARLGYAIEMKQLSETDRFGILD-----DHFALCMARQ-QT-LTSLLTLMASYSE--ETEYTVLSNLI 610 (876)
Q Consensus 542 yyRV~Yd~--~~w~~l~~~l~~~~i~~~~ra~li~-----D~~~la~~g~-l~-~~~~l~l~~~l~~--e~~~~~w~~~~ 610 (876)
+-++.|+. +.+..|...= .+.+.--+-+|-+. +...-...|. +. -..+++.+..+-. +.+...-..++
T Consensus 532 pv~l~~~~~~~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~~l 610 (863)
T TIGR02414 532 PVNLEYPYSDEDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKALLL 610 (863)
T ss_pred eEEEeCCCCHHHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence 88887764 3333322210 11221111111111 1111011232 21 2445666655332 22444443333
Q ss_pred HHH--HHHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 002818 611 TIS--YKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKET 677 (876)
Q Consensus 611 ~~l--~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~~~~lr~~il~~ac~~g~~~c 677 (876)
..- ..|...+..-+|+ ....+..-+...+..+|+++.-.. ...+....+.||..++.++|..+.++.
T Consensus 611 ~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~ 690 (863)
T TIGR02414 611 ALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADDAEI 690 (863)
T ss_pred cCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhH
Confidence 222 1233332111122 233344444555566676653111 122334568999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHH
Q 002818 678 LNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVL 757 (876)
Q Consensus 678 ~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L 757 (876)
.+.|.+.|++-- + -.-|-+.+.+++..-....++..+..+++++.....-+|--.+.|.+.. ++.+.++-
T Consensus 691 ~~~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~--~~~~~~v~ 760 (863)
T TIGR02414 691 RNLALEQFKSAD---N-----MTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATSPR--PDTLERVK 760 (863)
T ss_pred HHHHHHHHHhCC---C-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCc--ccHHHHHH
Confidence 999999888531 1 1122222233321100112234566666677766677888777775433 34455544
Q ss_pred HHhc
Q 002818 758 NFLL 761 (876)
Q Consensus 758 ~~~l 761 (876)
.+.-
T Consensus 761 ~l~~ 764 (863)
T TIGR02414 761 ALLQ 764 (863)
T ss_pred HHhc
Confidence 4433
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=1.5e-81 Score=744.64 Aligned_cols=707 Identities=22% Similarity=0.295 Sum_probs=501.7
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEE-ECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEEE
Q 002818 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (876)
Q Consensus 11 p~~~~p~~Y~l~l~~d~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (876)
|+.+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|+
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 56688899999999999999999999999876 456789999999999999999652 11111 4555677888
Q ss_pred EEeCCCCCCceEEEEEEEEeeeC--CCCcceEEeeeccCCeeeeeeeccCCcCCCCccccccCCCCCceEEEEEEEeCCC
Q 002818 90 LEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (876)
Q Consensus 90 i~l~~~L~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~t~~ep~~ar~~fPc~Dep~~ka~f~l~i~~p~~ 167 (876)
|.. + ++.++|+|.|++... ....|+|++.+ ++.|||||.+||+||||+|+|+.||+|+++|++|++
T Consensus 88 I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Eec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 872 3 336899999987654 44679998642 568999999999999999999999999999999994
Q ss_pred -C-eEeccCCcccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeEeecc----ccCCeEEEEEEcCCccchHHHHHHHH
Q 002818 168 -L-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVA 240 (876)
Q Consensus 168 -~-~~isng~~~~~~-~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~ 240 (876)
| +++|||+++... ..+++++++|+.++|||+|++||++|+|+.++.. ...++++++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 8 689999988774 4677899999999999999999999999988742 22359999999999988999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCc
Q 002818 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (876)
Q Consensus 241 ~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~ 320 (876)
.++|++||++||.|||++|+++|++|+|..|||||||+++|++..++.++...+......+..+||||+|||||||+||+
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999888766666677889999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHhhhhCcc-hhHHHHHHHHHHHhhhccccCCCCceeeecCCcchhcccccceeechhhHHH
Q 002818 321 EWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (876)
Q Consensus 321 ~~w~d~WL~EGfa~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (876)
+||+++|||||||+|++..+.....+. ..............+..|+...+||+... ...+++..|+.++|.||++||
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~vL 393 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEVI 393 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHHH
Confidence 999999999999999987766554332 11111100000122445666667777532 334667889999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----C--EEEEEE
Q 002818 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 473 (876)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~----~--~~~l~Q 473 (876)
|||+..||++.|+++|+.|+++|++++++++||++++++++|.|+.+|+ +|++|+|+|+++|++++ + +++++|
T Consensus 394 rMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q 472 (875)
T PRK14015 394 RMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQ 472 (875)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 89999999999999864 3 466667
Q ss_pred EeeccCCCCCCCeeEEEEEEEECc--ccc----------eeeEEeeccceEEEecccccccccCCCCCCceEEecCCcee
Q 002818 474 SQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (876)
Q Consensus 474 ~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 541 (876)
.+....+......|.|||.+..-+ +.. ...+.++.+++++.++++. .+ ..+.++.+...
T Consensus 473 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~fsa 543 (875)
T PRK14015 473 STPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGFSA 543 (875)
T ss_pred eCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCCCC
Confidence 654333333455899999996422 221 1235677788888887531 12 34678888888
Q ss_pred EEEEEcCHHHHHHHHHHHHc--CCCChhhHHHHHHHHHH--HHHc-CC-CC-HHHHHHHHHhcc--CCCcHHHHHHHHHH
Q 002818 542 FYRVKYDKDLAARLGYAIEM--KQLSETDRFGILDDHFA--LCMA-RQ-QT-LTSLLTLMASYS--EETEYTVLSNLITI 612 (876)
Q Consensus 542 yyRV~Yd~~~w~~l~~~l~~--~~i~~~~ra~li~D~~~--la~~-g~-l~-~~~~l~l~~~l~--~e~~~~~w~~~~~~ 612 (876)
+-++.|+... +.|...+.. +.++--+-+|-+..-.- ++.. |. +. -..+++.++.+- .+.+...-..++..
T Consensus 544 pv~~~~~~~~-~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~l 622 (875)
T PRK14015 544 PVKLEYDYSD-EDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLTL 622 (875)
T ss_pred cEEEeCCCCH-HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccC
Confidence 8888877432 222222221 22222111221111111 1111 22 21 134556555532 23344444433332
Q ss_pred HH--HHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 002818 613 SY--KIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKETLN 679 (876)
Q Consensus 613 l~--~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~~~~lr~~il~~ac~~g~~~c~~ 679 (876)
.. .|...+..-+++ ....+..-+...+..+|+++.-.. ...+....+.||..++..+|..+.++..+
T Consensus 623 p~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~ 702 (875)
T PRK14015 623 PSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAE 702 (875)
T ss_pred CCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 21 222222111121 223333444444555666653111 11234456899999999999999888888
Q ss_pred HHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 002818 680 EASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNF 759 (876)
Q Consensus 680 ~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~ 759 (876)
.|.+.|++-- +- .-|-+.+.++...-....++..+..++++++....-+|--.+.|.+-..| .+.++-.+
T Consensus 703 ~~~~~~~~a~---~m-----td~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~--~~~~v~~l 772 (875)
T PRK14015 703 LAEAQFDQAD---NM-----TDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPD--TLERVRAL 772 (875)
T ss_pred HHHHHHhhCC---CH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcC--HHHHHHHH
Confidence 8888888531 11 12222222222211011223456666667766667788888888655544 44444333
Q ss_pred h
Q 002818 760 L 760 (876)
Q Consensus 760 ~ 760 (876)
.
T Consensus 773 ~ 773 (875)
T PRK14015 773 M 773 (875)
T ss_pred h
Confidence 3
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=1e-74 Score=667.96 Aligned_cols=427 Identities=24% Similarity=0.391 Sum_probs=349.1
Q ss_pred cCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECC-CCEEEEEecCceeeEEEEEeccCCCCccccCeeEE----Eec
Q 002818 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVE----LVE 83 (876)
Q Consensus 9 rLp~~~~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~----~~~ 83 (876)
.=|.+++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|++|.+++. +.++. .+.
T Consensus 6 sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~ 76 (601)
T TIGR02411 6 SNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEP 76 (601)
T ss_pred cCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCC
Confidence 3477899999999999999999999999999999765 588999999999999998652 11222 223
Q ss_pred CCeEEEEEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeee-ccCCeeeeeeeccCCcCCCCccccccCCCCCceEEEEE
Q 002818 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (876)
Q Consensus 84 ~~~~l~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~ar~~fPc~Dep~~ka~f~l~ 161 (876)
.++.|+|.+++++.+| .++|+|.|+|..+ ..|++...+ ..+|..++++.|||||.+||+||||||+|++||+|+++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 5678999999999999 8999999999753 346654433 23466678889999999999999999999999999999
Q ss_pred EEeCCCCeEeccCCccceeecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEcCCccchHHHHHH-HH
Q 002818 162 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 240 (876)
Q Consensus 162 i~~p~~~~~isng~~~~~~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~ 240 (876)
|++| +.|++||..+.... ++..+++|+.++|||+||+||+||+|+..+ .|.++++|++|+..+.+++.+. .+
T Consensus 155 I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 88887776554332 345678999999999999999999998754 3678999999998888888887 89
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccC
Q 002818 241 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (876)
Q Consensus 241 ~~~l~~~e~~~g~~yP~~k~~~V~~-p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt 319 (876)
.++|+++|+++| |||++|+|+|++ |+|+.||||||| ++|.+..++.+.. ....+||||||||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999877 999999999987 789999999999 5677776765432 23579999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHhhhhCcchhHH-HHHHH--HHHHhhhccccCCCCceeeecCCc--chhcccccceeech
Q 002818 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHT--GEIDEIFDAISYRK 394 (876)
Q Consensus 320 ~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~p~~~~~~~~--~~~~~~f~~i~Y~K 394 (876)
++||+|+|||||||+|++.+++++.+|++... ..+.. .....+ +.+...+|+...+.+. .+++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 111111 2223334444333222 25678899999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCcceEEEEEe
Q 002818 395 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 465 (876)
Q Consensus 395 g~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~-----~~~l~~~-~~~W~~~~g~P~l~v~~~ 465 (876)
|+++|+||+..|| ++.|+++||.|+++|++++++++||++++.+.. +.+++.+ |+.|++++|+|.+.+..+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998763 2466666 899999999999876543
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=2.2e-72 Score=632.61 Aligned_cols=385 Identities=46% Similarity=0.820 Sum_probs=341.8
Q ss_pred cCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEE
Q 002818 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (876)
Q Consensus 9 rLp~~~~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l 88 (876)
|||++++|.||+|.|++++++.+|+|+++|++++.++++.|+||+.+++|.++.+.+.... .......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~--~~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSS--SEYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECS--CTECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcccc--ccccccceeecccccee
Confidence 8999999999999999999999999999999999999999999999999999999653221 11122337788888899
Q ss_pred EEEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeeecc--CCeeeeeeeccCCcCCCCccccccCCCCCceEEEEEEEeC
Q 002818 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (876)
Q Consensus 89 ~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~t~~ep~~ar~~fPc~Dep~~ka~f~l~i~~p 165 (876)
.|.+++++.+| .++|+|.|+|.++++..|+|++.|.+ ++...++++|+++|.+||+||||||+|++||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999999999999975 6788899999999999999999999999999999999999
Q ss_pred CCCeEeccCCccce-eecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEcCCccchHHHHHHHHHHHH
Q 002818 166 SELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (876)
Q Consensus 166 ~~~~~isng~~~~~-~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (876)
++++|+|||++... ..++++++++|..++|||+|++||+||+|..++..+.+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 99999999999887 44568999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCccccc
Q 002818 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (876)
Q Consensus 245 ~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~~w~ 324 (876)
++|+++||+|||++|+++|++|++..|||||||+|+|++..+++++..++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHH-HhhhccccCCCCceeeecCCcchhcccccceeechh
Q 002818 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (876)
Q Consensus 325 d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg 395 (876)
|+||+||||+|++++++++.+|++.++..+..+.. .++..|.....+|+..++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999888877777665 778999999999999888888999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-54 Score=455.21 Aligned_cols=433 Identities=25% Similarity=0.377 Sum_probs=339.9
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEECCCCEEEEEecCceeeEEEEEeccCCCCccccCeeEEEecCCeEEEE
Q 002818 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (876)
Q Consensus 11 p~~~~p~~Y~l~l~~d~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (876)
+..+...|++|++.+|++...++|++.+++++......|.|+.++|.|.+|.+++.+.. ..+.. .-.+...+..+.+
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~--~~i~~-~~~~~g~~~~~~l 89 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPP--FRIGF-RQPFLGSGQKLVL 89 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCC--CccCc-ccCCCCCceEEEe
Confidence 45567899999999999999999999999998777666999999999999999764211 11111 1122333344555
Q ss_pred EeCCCCCCc-eEEEEEEEEeeeCCCCcceEEeee-ccCCeeeeeeeccCCcCCCCccccccCCCCCceEEEEEEEeCCCC
Q 002818 91 EFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSEL 168 (876)
Q Consensus 91 ~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~ar~~fPc~Dep~~ka~f~l~i~~p~~~ 168 (876)
..+.+ +.| +.+|.|.|+... +..|+-.-.. ...|+.+.|+.+||+..+||..|||+|.|+.|.+|+..|.+|.++
T Consensus 90 ~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l 166 (613)
T KOG1047|consen 90 PAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGL 166 (613)
T ss_pred ccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcc
Confidence 55433 345 899999999753 3345543322 234777889999999999999999999999999999999999999
Q ss_pred eEeccCCcccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeccccCCeEEEEEEcCCccchHHHHHH-HHHHHHHH
Q 002818 169 VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLEL 246 (876)
Q Consensus 169 ~~isng~~~~~~-~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~~ 246 (876)
.+++++...++. -..++..++|....|+|+|++||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+.
T Consensus 167 ~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~~ 242 (613)
T KOG1047|consen 167 TALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLKA 242 (613)
T ss_pred eeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHHH
Confidence 999998765543 33457889999999999999999999987665 2667899999999888877776 89999999
Q ss_pred HHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCccccch
Q 002818 247 YKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTH 325 (876)
Q Consensus 247 ~e~~~g~~yP~~k~~~V~~-p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~~w~d 325 (876)
-|+.+| ||++.++|+|++ |+|++||||||.|.+.... ||-... ....+|||||||-||||+||...|++
T Consensus 243 Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWeh 312 (613)
T KOG1047|consen 243 AEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWEH 312 (613)
T ss_pred HHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccch
Confidence 999999 999999999999 5899999999977776665 554443 35789999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHH-HhhhccccCCCCceeeecCC--cchhcccccceeechhhHHHHHH
Q 002818 326 LWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVIRML 402 (876)
Q Consensus 326 ~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~~~--~~~~~~~f~~i~Y~Kg~~vl~mL 402 (876)
.||||||++|++..++..++|+............ ..-.+|.+...++...-+.+ .-+++..|+.+.|.||..+|+.|
T Consensus 313 fWLNEGfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~L 392 (613)
T KOG1047|consen 313 FWLNEGFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYL 392 (613)
T ss_pred hhhcccchhhhhhhhhhhhcchhHHHHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHHHHH
Confidence 9999999999999999999987433211111111 11123555555555433221 13457889999999999999999
Q ss_pred HHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC----CH--HHHHHHhhcCCCcceEEEE
Q 002818 403 QNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVK 463 (876)
Q Consensus 403 ~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~----~l--~~~~~~W~~~~g~P~l~v~ 463 (876)
++.+| ++.|...||.|+++|+++.+.++||.+.+-+.... ++ +--++.|++.+|.|...-.
T Consensus 393 e~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 393 EQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999 77899999999999999999999999998876532 22 2246999999999985543
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=5.1e-50 Score=439.49 Aligned_cols=313 Identities=37% Similarity=0.639 Sum_probs=269.8
Q ss_pred eEEecCCceeEEEEEcCHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhc-cCCCcHHHHHHHH
Q 002818 532 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 610 (876)
Q Consensus 532 wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~~~~i~~~~ra~li~D~~~la~~g~l~~~~~l~l~~~l-~~e~~~~~w~~~~ 610 (876)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++||+|+|+++++|.++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987669999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 002818 611 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 690 (876)
Q Consensus 611 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~ 690 (876)
..|..+.+++...++.....|++|+.+++.++++++||+..+++++....+|..|+.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444559999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCc-Ccc
Q 002818 691 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 767 (876)
Q Consensus 691 ~~~~--~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~l~~~-i~~ 767 (876)
++.+ ..||||+|.+|||+ ++++|+.++|++++++|++++++.+|..++.||||++|+++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~---~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCA---GVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHH---HTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHH---HHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7433 37999999988775 45689999999999999999999999999999999999999999999999985 999
Q ss_pred ccceeeee-ec-cc--cHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHhhccCCCHHHHHHHHHHHhc--CCCchHHHH
Q 002818 768 QDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS--RCKPYIART 840 (876)
Q Consensus 768 qd~~~~~~-v~-~~--g~~~~~~fl~~n~~~i~~~~~~~-~~l~~~i~~~~~~~~t~~~~~~~~~f~~~--~~~~~~~~~ 840 (876)
||+..++. ++ .+ |++++|+|+++||+.|.+++++. ..+..++..+++.++|+++++++++||+. +..++..++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988888 76 55 99999999999999999999865 47899999999999999999999999954 445688899
Q ss_pred HHHHHHHHH
Q 002818 841 LRQSIERVQ 849 (876)
Q Consensus 841 ~~~~le~i~ 849 (876)
+++++|+|+
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999986
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=4.6e-37 Score=348.46 Aligned_cols=428 Identities=19% Similarity=0.276 Sum_probs=315.7
Q ss_pred eeEEEEEEE-ecCCCCeEEEEEEEEEEEE-CCCCEEEEEecCceeeEEEEEeccCCC---------------Ccccc---
Q 002818 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDVV-GDTKFIVLNAADLTINNRSVSFTNKVS---------------SKALE--- 75 (876)
Q Consensus 16 p~~Y~l~l~-~d~~~~~~~G~v~I~~~~~-~~~~~i~L~~~~l~i~~v~i~~~~~~~---------------~~~~~--- 75 (876)
..|..+.|. +|+.+..+.|.++|++... .+...|.||++++.|.+|.|++..+.. +..+.
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 9999999999999999985 448999999999999999998752110 00000
Q ss_pred ------CeeEEEecCCeEEEEEeCCCCCC-c----eEEEEEEEEeeeCCCCcceEEeeeccCCeeeeeeeccCC-cCCCC
Q 002818 76 ------PTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (876)
Q Consensus 76 ------~~~~~~~~~~~~l~i~l~~~L~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~e-p~~ar 143 (876)
..-...+.+++.|.|.++++++. | ..+++|.|+..=+..+--|++..|........+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 01122345568999999988543 2 456778898654444445676665333333344445554 66799
Q ss_pred ccccccCCCCCceEEEEEEEeCCCCeEeccCCccce--eecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeccccCCeEE
Q 002818 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE--KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (876)
Q Consensus 144 ~~fPc~Dep~~ka~f~l~i~~p~~~~~isng~~~~~--~~~~~~~~~~f~~t~~m~~yl~a~~vg~f~~~~~~~~~g~~v 221 (876)
.||||.|.+..+++|+|++++|+..+++++|.+... .++-..++++|.-+.|+++..+|||||+|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 999999999999999999999999999999998876 333458899999999999999999999999873 2347899
Q ss_pred EEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHH
Q 002818 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (876)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~ 301 (876)
..|+.|+.....+...-...++++|||+.+|..|||+.+.+|++|....--|....|.+++.+ +||..+.. +.....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iI--Dq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNII--DQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhh--hHHHHH
Confidence 999999999888998899999999999999988999999999999877777777788888877 88887643 344456
Q ss_pred HHHHHHHHHHHHhcCccCccccchhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHHHhhhccccCC----CCceeeec
Q 002818 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAE----SHPIEVEV 377 (876)
Q Consensus 302 ~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~p~~~~~ 377 (876)
...+|-.||.||||-++++..|+|.||.+|+|.|+..+++++++|......+...+.-.-+..|.... +.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 78899999999999999999999999999999999999999999987654333322222233333211 11222111
Q ss_pred C--------------CcchhcccccceeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCC
Q 002818 378 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (876)
Q Consensus 378 ~--------------~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~ 443 (876)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 111111111111224777777888888887766555444433 233333
Q ss_pred HHHHHHHhhcCCCcceEEEEEe
Q 002818 444 VNKLMNSWTKQKGYPVISVKVK 465 (876)
Q Consensus 444 l~~~~~~W~~~~g~P~l~v~~~ 465 (876)
++.|++.|++..|+|++.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5788888888888888888754
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.32 E-value=1e-10 Score=126.07 Aligned_cols=237 Identities=16% Similarity=0.199 Sum_probs=156.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHH
Q 002818 231 NQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL 309 (876)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~~~V~~-p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl 309 (876)
.+.+...+.++++++.-.+.|| +-||.++.+++. .+-..|||||-.-.........+. +....+....+++||+
T Consensus 181 ~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~~----~~~ky~~~l~llsHEy 255 (558)
T COG3975 181 FDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGFT----DQDKYQDLLGLLSHEY 255 (558)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecccccccccccccc----chhHHHHHHHHHHHHH
Confidence 3566677888999999999999 899999887765 556678999854333333322221 1122466789999999
Q ss_pred HHHHhcCccCcccc-----------chhhhhhHHHHHHHHHHhhhhCcchhHHHHHHH---HHHHhhhccccCCCCceee
Q 002818 310 AHQWFGNLVTMEWW-----------THLWLNEGFATWVSYLAADSLFPEWKIWTQFLD---ECTEGLRLDGLAESHPIEV 375 (876)
Q Consensus 310 aHqWfGn~Vt~~~w-----------~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~ 375 (876)
.|-|-+..+.|..- .-+|+.|||++|+..+..-.. |-.. .++|+. +...++..-...-..|+..
T Consensus 256 fH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl~~-~~~~l~~la~tl~~~~~~~gRl~~~laE 333 (558)
T COG3975 256 FHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GLIS-LETYLNYLAKTLARYLNTPGRLRQSLAE 333 (558)
T ss_pred HHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-ccCc-HHHHHHHHHHHHHHHhcCCceecccccc
Confidence 99999988877532 358999999999997654332 1100 123332 2222222222222233322
Q ss_pred ecCCc-----chhcccc-ccee--echhhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCChHHHHHHHHhcc
Q 002818 376 EVNHT-----GEIDEIF-DAIS--YRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGS 440 (876)
Q Consensus 376 ~~~~~-----~~~~~~f-~~i~--Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~df~~~l~~~~ 440 (876)
...++ .. +..+ +.+. |.||++|--+|...| |...+...|+.+.+.+.. +..+++++...+++++
T Consensus 334 sS~~awik~yr~-d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~t 412 (558)
T COG3975 334 SSFDAWIKYYRP-DENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVT 412 (558)
T ss_pred cccchhHHhhcc-cccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhc
Confidence 21111 00 1111 2223 899999999999888 466788888888888766 6679999999999999
Q ss_pred CCCHHHHHHHhhcCCCcceEEEEEeCCEEEEEEEe
Q 002818 441 GEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 475 (876)
Q Consensus 441 ~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~l~Q~r 475 (876)
|.++..||+..+++..-|.+.---....+++++++
T Consensus 413 g~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 413 GLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred cccHHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 99999999999999877766443333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.12 E-value=1e-10 Score=109.12 Aligned_cols=106 Identities=29% Similarity=0.499 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhcCccCccccchhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHHHhhhccccCCCCceeeecC
Q 002818 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 378 (876)
Q Consensus 299 ~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~ 378 (876)
..+..+++||++|+|+++.++.......|++||+|+|++.. ... .+.......+..+...+-.++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~----~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR----IED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC----ccc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 44568999999999999999877777899999999999933 111 11112222233333222222221111
Q ss_pred CcchhcccccceeechhhHHHHHHHHhhCHHHHHHHHHHH
Q 002818 379 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (876)
Q Consensus 379 ~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 418 (876)
. ...+....|.+|++++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33445668999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.67 E-value=0.002 Score=69.30 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHH--hcCccCcc--ccchhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHHHhhhcc-ccCCCCc
Q 002818 298 KQRVATVVAHELAHQW--FGNLVTME--WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHP 372 (876)
Q Consensus 298 ~~~~~~~iaHElaHqW--fGn~Vt~~--~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~p 372 (876)
...+..++|||+-|+= --+.|... .-.|.|||||++.-++.++..+..+.... ........+..+ .....+.
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~---i~d~R~~~y~~~~~~~~~~~ 212 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNN---IRDSRIPYYNNYTSGNYNCS 212 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCc---cccccHHHHhhccccCCCcc
Confidence 4557899999999974 32344443 23689999999999999887776432111 000000111111 1111122
Q ss_pred eeeecCCcchhcccccceeechhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHh-c-cCCCHHHHHHH
Q 002818 373 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNS 450 (876)
Q Consensus 373 ~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-~~~~l~~~~~~ 450 (876)
+... ... .-....|....++..-|....|.+.+++.|.. ....+..+..++..+ + .+.++.++|.+
T Consensus 213 l~~w-~~~-----g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~ 280 (366)
T PF10460_consen 213 LTAW-SSF-----GDSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRR 280 (366)
T ss_pred eeec-CCC-----ccccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 2211 111 11234699999999999998899887666651 233566776666554 3 35689999999
Q ss_pred hhcCC
Q 002818 451 WTKQK 455 (876)
Q Consensus 451 W~~~~ 455 (876)
|...-
T Consensus 281 w~~A~ 285 (366)
T PF10460_consen 281 WGVAL 285 (366)
T ss_pred HHHHH
Confidence 97655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.14 E-value=0.00028 Score=63.56 Aligned_cols=43 Identities=23% Similarity=0.470 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCccCcc-----------ccchhhhhhHHHHHHHHHHhhh
Q 002818 301 VATVVAHELAHQWFGNLVTME-----------WWTHLWLNEGFATWVSYLAADS 343 (876)
Q Consensus 301 ~~~~iaHElaHqWfGn~Vt~~-----------~w~d~WL~EGfa~y~~~~~~~~ 343 (876)
...+++||+.|.|-+..+.|. --+.+|+-|||++|++.+++..
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 457899999999998666654 3456899999999999887655
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.63 E-value=0.29 Score=53.63 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=143.8
Q ss_pred EEEEEEEeeccCCCCCCCeeEEEEEEEECc--ccc-----eeeEEeeccceEEEecccccccccCCCCCCceEEecCCce
Q 002818 468 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (876)
Q Consensus 468 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (876)
+++++|......+.+...+|.|||.+..-+ +.. ...+.+++.++++.+.++. .. ...-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 578999887666666667999999985432 222 1225677888899997642 22 4677888888
Q ss_pred eEEEEEcCH--HHHHHHHHHHHcCCCChhhHH--------HHHHHHHHHHHcC-CCCH-HHHHHHHHh-cc-CCCcHHHH
Q 002818 541 GFYRVKYDK--DLAARLGYAIEMKQLSETDRF--------GILDDHFALCMAR-QQTL-TSLLTLMAS-YS-EETEYTVL 606 (876)
Q Consensus 541 gyyRV~Yd~--~~w~~l~~~l~~~~i~~~~ra--------~li~D~~~la~~g-~l~~-~~~l~l~~~-l~-~e~~~~~w 606 (876)
-+-++.||- +...-|... +. +.-+|. ++|.+...-..+| .... ..+++.++. |. ...+...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D~-D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---DS-DPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH----S-SHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---CC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 888888873 333223222 11 233332 1122222222222 1111 234454443 22 33344444
Q ss_pred HHHHHHHH--HHHHHHhccChh--------HHHHHHHHHHHHHHHHHHHcC----CccCCCCCHHHHHHHHHHHHHHHhc
Q 002818 607 SNLITISY--KIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLG----WDSKPGESHLDALLRGEIFTALALL 672 (876)
Q Consensus 607 ~~~~~~l~--~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~l~----~~~~~~~~~~~~~lr~~il~~ac~~ 672 (876)
..++.... .|...+..-+|+ ....+..-+...+..+|+++. +.. ..+....+.||..++..++..
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~-~~~~~g~RaLkn~~L~yL~~~ 231 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSP-DAEAAGRRALKNLCLSYLAAA 231 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT--SHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 43333221 222222110111 222233333344555666651 111 234456789999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHH
Q 002818 673 GHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNI 752 (876)
Q Consensus 673 g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~ 752 (876)
+.++..+.|.+.|+.-. + ---|-+.+.+++..-....++..+..++++++..-.-+|--.+.|.+...| .
T Consensus 232 ~~~~~~~la~~qy~~A~---n-----MTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~~--~ 301 (367)
T PF11940_consen 232 DDPEAAELAQEQYKSAD---N-----MTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSPD--T 301 (367)
T ss_dssp TCTHHHHHHHHHHHHSS---S-----HHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--STT--H
T ss_pred CchHHHHHHHHHHHhCC---C-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCcc--H
Confidence 99999999999998641 1 112222223333211112234466666777766666788888888776654 4
Q ss_pred HHHHHHHhccCcCccccceeeee-eccc-cHHHHHHHHHHHHHHHHHHhCC
Q 002818 753 VLEVLNFLLSSEVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGS 801 (876)
Q Consensus 753 l~~~L~~~l~~~i~~qd~~~~~~-v~~~-g~~~~~~fl~~n~~~i~~~~~~ 801 (876)
+.++-.+.-++. |. -..| .|.+.-.|...|...+...-|+
T Consensus 302 l~~V~~L~~Hp~---------F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~ 343 (367)
T PF11940_consen 302 LERVKKLMQHPA---------FDLKNPNRVRALIGAFAQANPVQFHAADGS 343 (367)
T ss_dssp HHHHHHHTTSTT---------TTTT-HHHHHHHHHHHHHC-HHHHT-TTSH
T ss_pred HHHHHHHhcCCC---------CCCCCCcHHHHHHHHHHhcChhhhcCCCCc
Confidence 555444443332 23 2334 5666666666776666665443
No 16
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=96.44 E-value=0.048 Score=54.48 Aligned_cols=129 Identities=22% Similarity=0.323 Sum_probs=75.7
Q ss_pred ceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccCccccchhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHH
Q 002818 278 LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDE 357 (876)
Q Consensus 278 li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~ 357 (876)
-|.++...+--.+. +...+..+..++.||++|-|=.+--.. .--||-||+|.|+-..+- ..|
T Consensus 75 ~I~~S~~~i~~~~~--~~~~~~Ei~Gvl~HE~~H~~Q~~~~~~---~P~~liEGIADyVRl~aG--~~~----------- 136 (205)
T PF04450_consen 75 EIHFSARYIAKYPA--DGDVRDEIIGVLYHEMVHCWQWDGRGT---APGGLIEGIADYVRLKAG--YAP----------- 136 (205)
T ss_pred EEEEeHHHHhhccc--ccchHHHHHHHHHHHHHHHhhcCCCCC---CChhheecHHHHHHHHcC--CCC-----------
Confidence 46666553322211 123346788999999999765443221 125899999999976520 000
Q ss_pred HHHhhhccccCCCCceeeecCCcchhcccccceeechhhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCChHHHHHHH
Q 002818 358 CTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAAL 436 (876)
Q Consensus 358 ~~~~~~~d~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l 436 (876)
.....|... ..++ -.|.-.|.+|.-|+. ..|+ .|.+-|..=+.+..+ +.+++|..
T Consensus 137 ---------~~w~~p~~~---------~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~- 192 (205)
T PF04450_consen 137 ---------PHWKRPGGG---------DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKE- 192 (205)
T ss_pred ---------ccccCCCCC---------CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHH-
Confidence 001111100 1223 368999999999999 6664 355555555555555 45666644
Q ss_pred HhccCCCHHHHHHH
Q 002818 437 EEGSGEPVNKLMNS 450 (876)
Q Consensus 437 ~~~~~~~l~~~~~~ 450 (876)
.+|++++++++.
T Consensus 193 --l~G~~v~~LW~e 204 (205)
T PF04450_consen 193 --LLGKPVDELWAE 204 (205)
T ss_pred --HHCcCHHHHHhh
Confidence 558899988764
No 17
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.79 E-value=0.0058 Score=55.71 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCccCccccc--hhhhhhHHHHHHHHHHh
Q 002818 303 TVVAHELAHQWFGNLVTMEWWT--HLWLNEGFATWVSYLAA 341 (876)
Q Consensus 303 ~~iaHElaHqWfGn~Vt~~~w~--d~WL~EGfa~y~~~~~~ 341 (876)
.+++||-+||=..|.=-..--. =.|+.||||+|++-.-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 5899999999887643222111 27999999999996644
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.40 E-value=0.48 Score=47.36 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCc-----ccccccceeeecccccc-cCCCchhHHHHHHHHHHHHHHHHHH
Q 002818 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQW 313 (876)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g-----~me~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHqW 313 (876)
+.+.+....+.+ |-+.+++.++|.-+.+ .+...|-..+....+++ -+. ......+..++|||+.|.+
T Consensus 5 i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~~ 77 (195)
T PF10026_consen 5 IEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHNC 77 (195)
T ss_pred HHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHHH
Confidence 444555555544 4557888766532222 11123333344433333 222 1234478899999999986
Q ss_pred hcCccCc----cccchhhhhhHHHHHHHHHHhhhhC
Q 002818 314 FGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF 345 (876)
Q Consensus 314 fGn~Vt~----~~w~d~WL~EGfa~y~~~~~~~~~~ 345 (876)
--..+.. ..--|.-+.||+|.+++.....+..
T Consensus 78 r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 78 RYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 4333321 1123567899999999977665554
No 19
>PRK04860 hypothetical protein; Provisional
Probab=89.16 E-value=1 Score=43.07 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc--ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 002818 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN--YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (876)
Q Consensus 236 ~l~~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~--~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (876)
+...+...+..-+++||.|+|.|+..+-.- ...||+-. .+-|-++.. ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 445667778888899998888776654332 22244422 233444433 2221 234567889999999987
Q ss_pred h
Q 002818 314 F 314 (876)
Q Consensus 314 f 314 (876)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 3
No 20
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.08 E-value=6.4 Score=46.78 Aligned_cols=198 Identities=18% Similarity=0.181 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhH
Q 002818 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL 627 (876)
Q Consensus 549 ~~~w~~l~~~l~~~~i~~~~ra~li~D~~~la~~g-~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~ 627 (876)
+.....|.+.+..+.++..++++++.-+.+.+..- .--.+.+++|++.=....+..++.+++-.+..+.+......+..
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34556677777778899999999988777776433 33345566666543445677888888888887776554322221
Q ss_pred ----HHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhh
Q 002818 628 ----LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 703 (876)
Q Consensus 628 ----~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 703 (876)
...+..|+...+....++ ++ ..-+...+..++..|++..+.. +..++.+ ....|+.+|-
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~-------~~----~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~ 498 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSK-------GD----EEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRL 498 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhc-------CC----chheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHH
Confidence 234455555544433321 11 1224667888899999876644 4444443 3457888887
Q ss_pred hhheeeeeecccCCHHHHHHHHHHHHcCCCH-HHHHHH-HHHhCCCCCHHHHHHHHHHhccC
Q 002818 704 AAYVAVMQKVSASDRSGYESLLRVYRETDLS-QEKTRI-LSSLASCPDVNIVLEVLNFLLSS 763 (876)
Q Consensus 704 ~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~-~ek~~i-l~aL~c~~d~~~l~~~L~~~l~~ 763 (876)
....++-..+..-....-+.++..|.+...+ +-|... +..|-|-.+...++++.+.+..+
T Consensus 499 ~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 499 AAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 5444443222234566788899999986554 455554 44455668999999988887644
No 21
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=88.03 E-value=2.2 Score=43.02 Aligned_cols=113 Identities=23% Similarity=0.242 Sum_probs=65.5
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHhCCCC------------CCCCccEEEecCCCCccc----ccccceeeecc-----
Q 002818 226 QVGKANQGKFALNVAVKTLELYKEYFAVPY------------SLPKLDMIAIPDFAAGAM----ENYGLVTYRET----- 284 (876)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~l~~~e~~~g~~y------------P~~k~~~V~~p~~~~g~m----e~~gli~~~e~----- 284 (876)
.|...+....-+..+..+-.|-++.++.|= |+--..+.+.|.++.... --.|++.|+.-
T Consensus 73 dp~~d~rLr~rL~~A~aiR~fAseeL~LPDN~SYR~YadIgRp~vvwnVFAaPelSl~p~TwCFpv~GCV~YRGYysr~a 152 (376)
T COG4324 73 DPSTDERLRARLTSASAIRRFASEELALPDNSSYRSYADIGRPDVVWNVFAAPELSLTPITWCFPVFGCVPYRGYYSRKA 152 (376)
T ss_pred CCCccHHHHHHHhhHHHHHHHHHHhccCCCCcceeeeeccCCcceeeeeccCcccccceeeeeeeeecceecccchhhhh
Confidence 344444455566677777788788777542 333445555576653322 22455555431
Q ss_pred --------------------------cccccCCCchh--HHHHHHHHHHHHHHHHHHhcCccCccccchhhhhhHHHHHH
Q 002818 285 --------------------------ALLYDDQHSAA--ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWV 336 (876)
Q Consensus 285 --------------------------~ll~~~~~~~~--~~~~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~ 336 (876)
..+-||-.++. -....++.+|-||+|||=+.-- +|.=+||+||+..
T Consensus 153 A~a~Aa~lraqG~DVyV~Gv~AYSTLGwFdDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaV 226 (376)
T COG4324 153 AAASAAELRAQGLDVYVSGVTAYSTLGWFDDPLLSTMLRQDDTYLASLIFHELAHQKIYVN------NDTAFNESFATAV 226 (376)
T ss_pred HHHhHHHHHhcCCceeeecccceecccccccHHHHHHhcCChHHHHHHHHHHHhhheEeec------CcchHhHHHHHHH
Confidence 01111111111 1234678999999999966421 3566799999999
Q ss_pred HHHHhhhh
Q 002818 337 SYLAADSL 344 (876)
Q Consensus 337 ~~~~~~~~ 344 (876)
+...+++.
T Consensus 227 Et~Gvr~W 234 (376)
T COG4324 227 ETSGVRKW 234 (376)
T ss_pred HHHhHHHH
Confidence 98776653
No 22
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=86.57 E-value=2.7 Score=44.99 Aligned_cols=114 Identities=24% Similarity=0.266 Sum_probs=67.6
Q ss_pred EcCCccchHHHHHHHHHHHHHHHHHHhCCCC------------CCCCccEEEecCCCCccccc----ccceeeec-----
Q 002818 225 CQVGKANQGKFALNVAVKTLELYKEYFAVPY------------SLPKLDMIAIPDFAAGAMEN----YGLVTYRE----- 283 (876)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~y------------P~~k~~~V~~p~~~~g~me~----~gli~~~e----- 283 (876)
..|......+.-+..+.++=.|-.+.+|.|= |+--..+++.|.++.-.-.. .|++.|+-
T Consensus 40 ~dp~~~~~lr~rL~~~~~iR~FA~~~L~Lpdn~sY~~YadL~Rp~vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~~~ 119 (337)
T PF10023_consen 40 ADPATPPALRARLRLAQQIRRFASEELGLPDNGSYRSYADLDRPYVVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFDEA 119 (337)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhcCCCcEEEEEEecCcccCCcceeeccccccccccCcCCHH
Confidence 3455555666677788888888888887442 23334666777764322221 34444432
Q ss_pred --------------------------ccccccCCCchh--HHHHHHHHHHHHHHHHHHhcCccCccccchhhhhhHHHHH
Q 002818 284 --------------------------TALLYDDQHSAA--ANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATW 335 (876)
Q Consensus 284 --------------------------~~ll~~~~~~~~--~~~~~~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y 335 (876)
=..+-||-.++. -....++.+|-||+|||=+. .+ +|.=+||+||++
T Consensus 120 ~A~~~a~~L~~~GlDv~v~gV~AYSTLGwF~DPlLSt~l~~~~~~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtf 193 (337)
T PF10023_consen 120 DARAEAAELRAQGLDVYVGGVPAYSTLGWFDDPLLSTMLRYPDGELARLIFHELAHQTLY----VK--GDTAFNESFATF 193 (337)
T ss_pred HHHHHHHHHHHcCCceeEecccccccccccCCcccccccCCCchHHHHHHHHHHhhceee----cC--CCchhhHHHHHH
Confidence 111112211111 12346889999999999432 11 356689999999
Q ss_pred HHHHHhhhh
Q 002818 336 VSYLAADSL 344 (876)
Q Consensus 336 ~~~~~~~~~ 344 (876)
.+....++.
T Consensus 194 Ve~~G~~~w 202 (337)
T PF10023_consen 194 VEREGARRW 202 (337)
T ss_pred HHHHHHHHH
Confidence 998876654
No 23
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=84.12 E-value=5.9 Score=39.86 Aligned_cols=92 Identities=21% Similarity=0.340 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 002818 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (876)
Q Consensus 235 ~~l~~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (876)
.+.......++.|++.+|.+ .+++.+=-.-. ..|....-|.|.++-.-+.+++ .-+..+|+|||||--.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~--~~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLP--PPKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCC--cceEEEeehhh-ccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhcc
Confidence 34456667778888888863 34444332222 2455555678888877333333 2478899999999875
Q ss_pred cCccCccccchhhhhhHHHHHHHHHHhhhhCcchhHHHH
Q 002818 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (876)
Q Consensus 315 Gn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 353 (876)
-| --...| ..+++..|+|.....
T Consensus 178 ~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 178 PN-----HSKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred CC-----CCHHHH-----------HHHHHHCcCHHHHHH
Confidence 44 333344 344566788765433
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=81.39 E-value=1.7 Score=41.14 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=34.1
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEecCC--CCccccc-ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 002818 242 KTLELYK-EYFAVPYSLPKLDMIAIPDF--AAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (876)
Q Consensus 242 ~~l~~~e-~~~g~~yP~~k~~~V~~p~~--~~g~me~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (876)
+.++.++ .+|+.++|-+ .+...... ..|.-.. .+.|.++.. .........+..+|.|||+|.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~r~~~~~G~~~~~~~~I~ln~~-------l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNKRLRKTGGRCLLKSAEIRLNPK-------LLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEehhhhhhhHHhhcCCCEEEeCHH-------HHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444455 8888777765 22222221 1222221 334444443 111122345778999999999964
No 25
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=80.22 E-value=90 Score=38.20 Aligned_cols=129 Identities=14% Similarity=0.192 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCcc-CccccchhhhhhHHHHHHHHHHhhhhCc---chhH---HHHHHHHHHHhhhccccCCCCceee
Q 002818 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI---WTQFLDECTEGLRLDGLAESHPIEV 375 (876)
Q Consensus 303 ~~iaHElaHqWfGn~V-t~~~w~d~WL~EGfa~y~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~d~~~~~~p~~~ 375 (876)
..+-|||+|.+=|..+ .-..+.+.| |-=+|.++++..+..... .|-. ........+.+. .....|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~----i~~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL----IDNNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH----HhcCCC---
Confidence 4789999999988887 444566888 778888888776552111 1110 001111111111 001111
Q ss_pred ecCCcchhccccccee-echhhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHhc-cCCCHHHHHHHh
Q 002818 376 EVNHTGEIDEIFDAIS-YRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVNKLMNSW 451 (876)
Q Consensus 376 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~--~~~df~~~l~~~-~~~~l~~~~~~W 451 (876)
|+... -.|=..+..|+...-|++.|+..=+.|-+. .-.+. ..-.+++.+... ++.|+..+++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 22111 235455555888889999998877777665 22222 223334455555 899999999998
No 26
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=73.75 E-value=3.5 Score=44.50 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhhhhhHHHHHHHHHHhhh
Q 002818 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (876)
Q Consensus 301 ~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~ 343 (876)
.-.++|||+|||= | ...|+=|.|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 4578999999994 3 34899999999987654
No 27
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=72.82 E-value=37 Score=40.76 Aligned_cols=195 Identities=14% Similarity=0.126 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhcc------
Q 002818 551 LAARLGYAIEMKQLSETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADA------ 623 (876)
Q Consensus 551 ~w~~l~~~l~~~~i~~~~ra~li~D~~~la~~g-~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~------ 623 (876)
....|.+.+..+.++..+.++++.-+....+.- .--.+.+++|++.-....+..++.+++-.+..+.+.....
T Consensus 396 av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~ 475 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF 475 (618)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence 455666667777888887777766554444221 1112333334433333466778888887877776655432
Q ss_pred ----ChhHHHHHHHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCc
Q 002818 624 ----RPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPP 699 (876)
Q Consensus 624 ----~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~ 699 (876)
.....+.+..++.+.+.....+ .+..-+...+..+...|++..+ ..+..+..+ ....|.
T Consensus 476 ~~~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~~~~~~LkaLgN~g~~~~i----~~l~~~i~~--~~~~~~ 538 (618)
T PF01347_consen 476 CDPCSRCIIEKYVPYLEQELKEAVSR-----------GDEEEKIVYLKALGNLGHPESI----PVLLPYIEG--KEEVPH 538 (618)
T ss_dssp -----SS--GGGTHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHHT-GGGH----HHHHTTSTT--SS-S-H
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhc-----------cCHHHHHHHHHHhhccCCchhh----HHHHhHhhh--ccccch
Confidence 0112222333333333311111 1234556678888889987654 344556554 225788
Q ss_pred chhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHH-HHHHHHH-hCCCCCHHHHHHHHHHhcc
Q 002818 700 DIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRILSS-LASCPDVNIVLEVLNFLLS 762 (876)
Q Consensus 700 ~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e-k~~il~a-L~c~~d~~~l~~~L~~~l~ 762 (876)
.+|-++.-++.+.+..-.....+.++..|.+.....| |...+.. |-|-.+...++++.+.+-.
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 9997655454432333445678999999998766554 4444433 3566889999998877643
No 28
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=65.51 E-value=9.5 Score=37.68 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCccCccccchhhhhhHHHHHHHHHHhhh
Q 002818 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (876)
Q Consensus 301 ~~~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~ 343 (876)
...++|||+.|-|.- +.--.--+.++-||+++-+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 356899999999962 11111225789999999999987764
No 29
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=60.02 E-value=11 Score=42.04 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=35.7
Q ss_pred CCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 002818 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (876)
Q Consensus 256 P~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (876)
|-..++++.|-+-...|.-.+|.-++-.+.++...+ +...++.|||||++|-==+
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~qr 144 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVAQR 144 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHhhh
Confidence 445588898877666666666654444443444332 3456899999999996433
No 30
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=59.19 E-value=16 Score=34.60 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCC---Ccccccccceeeecccc-cccCCCchhHHHHHHHHH
Q 002818 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 304 (876)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~~g~~yP~~k--~~~V~~p~~~---~g~me~~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 304 (876)
..+..+...+.++.+||.+.|| .=++.. ..++..-.+. ..|.-+-..++|.+-.- .+.+- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 4456677788999999999999 556552 3444332221 12332223444443221 11111 112468
Q ss_pred HHHHHHHH
Q 002818 305 VAHELAHQ 312 (876)
Q Consensus 305 iaHElaHq 312 (876)
+||||+|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999995
No 31
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=58.26 E-value=52 Score=28.51 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=33.4
Q ss_pred CCCEEEEEec-Cce--eeEEEEEeccCCCCccccCeeEEEecCCeEEEEEeCCCCCCceEEEEEEEEe
Q 002818 45 DTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (876)
Q Consensus 45 ~~~~i~L~~~-~l~--i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~L~~g~~~l~i~y~g 109 (876)
+...|.|... .++ ...+.+.+.++ ..+.......+.....+.+.++.+|++|.|+|.-+--+
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 3456777665 244 66777765332 22333333444456799999999999999987755444
No 32
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=54.69 E-value=26 Score=33.37 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 002818 297 NKQRVATVVAHELAHQWFG 315 (876)
Q Consensus 297 ~~~~~~~~iaHElaHqWfG 315 (876)
....+..+|.|||+|.|..
T Consensus 56 ~~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457889999999999974
No 33
>PRK04351 hypothetical protein; Provisional
Probab=54.53 E-value=15 Score=34.71 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002818 298 KQRVATVVAHELAHQW 313 (876)
Q Consensus 298 ~~~~~~~iaHElaHqW 313 (876)
...+..+|+|||+|-.
T Consensus 58 ~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 58 LEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4568899999999953
No 34
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=54.27 E-value=37 Score=32.03 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=33.9
Q ss_pred ccccCeeEEEecCCeEEEEEeCCCCCCc-eEEEEEEEEeeeCCCCcceEEe
Q 002818 72 KALEPTKVELVEADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRS 121 (876)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~i~l~~~L~~g-~~~l~i~y~g~~~~~~~G~y~~ 121 (876)
..+....+..+.++..+.|.+++|++|| .++|.+ .+.-+....|.|.-
T Consensus 75 ~~ipl~~v~~~~~~~~i~I~f~~PV~pG~tv~V~l--~~v~NP~~~G~Y~f 123 (146)
T PF10989_consen 75 ESIPLAEVEWDEDGRTITITFDEPVPPGTTVTVVL--SPVRNPRSGGTYQF 123 (146)
T ss_pred CccCceEEEEcCCCCEEEEEeCCCCCCCCEEEEEE--EeeeCCCCCCeEEE
Confidence 3444566888899999999999999999 555554 44434455577653
No 35
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=51.79 E-value=16 Score=32.66 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 002818 300 RVATVVAHELAHQWFGNLV 318 (876)
Q Consensus 300 ~~~~~iaHElaHqWfGn~V 318 (876)
....+++|||+|.+++..-
T Consensus 41 ~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 41 RQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 3467999999999988654
No 36
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=51.72 E-value=27 Score=29.15 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHH
Q 002818 659 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 738 (876)
Q Consensus 659 ~~lr~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~ 738 (876)
...|..++..++..+.++.+....+++ .+ -++.+|..+..++.. -|+.+.+..|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~l----~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIELL----KD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH----TS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHH----cC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 467778888888888775554444443 33 246788766554432 466777888888888777766677
Q ss_pred HHHHHhC
Q 002818 739 RILSSLA 745 (876)
Q Consensus 739 ~il~aL~ 745 (876)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 7888775
No 37
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=51.05 E-value=23 Score=36.00 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCccccccc----ceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCc
Q 002818 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG----LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 317 (876)
Q Consensus 242 ~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~g----li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~ 317 (876)
+.++-+.+..|.+.|.+++-++-.|. ..|.-..+ .|.+... ++.. .+...+..++|||++|-.-++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCc
Confidence 33444444445566665555554444 33332222 2444444 3321 2345688999999999998766
Q ss_pred cCc
Q 002818 318 VTM 320 (876)
Q Consensus 318 Vt~ 320 (876)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 544
No 38
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=49.88 E-value=38 Score=34.52 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 002818 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (876)
Q Consensus 234 ~~~l~~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (876)
+.+.+.....++.+.+.+|.++.--++. ..-.. .|+-...|-|.++.. +..- ...-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~~-WGScs~~~~i~~~~~-l~~~-------p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKRR-WGSCSKAGEIRFNWR-LVMA-------PEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccce-eeeecCCCcEEeehh-hhcC-------CHHHHHHHHHHHHHHHh
Confidence 3455667777888999999765433222 11111 233333344444433 2211 23457889999999998
Q ss_pred hcCccCccccchhhhhhHHHHHHHHHHhhhhCcchhHHHH
Q 002818 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (876)
Q Consensus 314 fGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~ 353 (876)
..|- + ...| ..++.++|++.....
T Consensus 188 e~nH-s----~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-S----KRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-c----HHHH-----------HHHHHHCCChHHHHH
Confidence 8772 2 2233 344566787665433
No 39
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=45.61 E-value=61 Score=29.50 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=35.9
Q ss_pred CEEEEEec---CceeeEEEEEeccCCCCccccCeeEEEecCC-eEEEEEeCCCCCCceEEEEEEEEe
Q 002818 47 KFIVLNAA---DLTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (876)
Q Consensus 47 ~~i~L~~~---~l~i~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~L~~g~~~l~i~y~g 109 (876)
..|.|+.. ...+..+.+.+.++ ..+...+...+..+ .+++|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 35666665 23345666655332 12222233333333 459999999999999998877654
No 40
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=44.68 E-value=75 Score=31.48 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 002818 300 RVATVVAHELAHQW 313 (876)
Q Consensus 300 ~~~~~iaHElaHqW 313 (876)
..+.++|||++|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 45789999999996
No 41
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=43.00 E-value=71 Score=32.52 Aligned_cols=117 Identities=9% Similarity=0.058 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH--
Q 002818 568 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEK-- 645 (876)
Q Consensus 568 ~ra~li~D~~~la~~g~l~~~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 645 (876)
-|.+++.=...+...|.++...+.+++..|-.|-+..|=..+....+.+.+.++..... ...+.+-+=+.+..+..+
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~-~~~~ldLlP~~Ls~L~~~~~ 82 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNK-NGKWLDLLPKCLSALSASES 82 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTTTHHHHHHHHHHT-S-
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcc-cchHHHHHHHHHHHHhcCcc
Confidence 37778888888899999999999999999999999999888888887776666532111 112222222222222222
Q ss_pred cCCccCCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 002818 646 LGWDSKPGESHLDALLRGEIFTALALLG-HKETLNEASKRFHAF 688 (876)
Q Consensus 646 l~~~~~~~~~~~~~~lr~~il~~ac~~g-~~~c~~~A~~~f~~~ 688 (876)
+.. .+....-...+..+++-.|... .+.|+-.-..+|++.
T Consensus 83 i~~---~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~ 123 (223)
T PF14675_consen 83 INY---NGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDV 123 (223)
T ss_dssp -SS---SS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS
T ss_pred ccc---ccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Confidence 221 1223344688888999999887 446776777777764
No 42
>PRK03982 heat shock protein HtpX; Provisional
Probab=42.77 E-value=56 Score=34.87 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc-----ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 002818 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN-----YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (876)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~-----~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (876)
..+.++-+.+..|+| .+++-++ |+....|+-. -|.|...+. ++ +. -+...+..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-IL-NL-----LNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HH-hh-----CCHHHHHHHHHHHHHHHHc
Confidence 455566666777764 4565554 3322222221 233434433 22 11 1345689999999999765
Q ss_pred cC
Q 002818 315 GN 316 (876)
Q Consensus 315 Gn 316 (876)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 43
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=42.49 E-value=38 Score=36.29 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCCCCCCccEEEecCCCCcccccc---cceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccC
Q 002818 244 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (876)
Q Consensus 244 l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt 319 (876)
+.-....-|++ +.+++.++..|...+-++... |.|...+. ++ +. -+...+..+++||++|.=-++.+.
T Consensus 105 v~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 105 VAELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-DL-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 33344455533 346777776665544455553 66666655 33 21 134568899999999987776554
No 44
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=41.97 E-value=1.5e+02 Score=32.80 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCccCccccchhhhhhHHHHHHHHHHhhhhCcchhHHHHHHHHHH
Q 002818 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 359 (876)
Q Consensus 303 ~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~~~~~~~~~~~~~~ 359 (876)
-.|..+.| |+|.-.... --+|||.|+|..+.++.+++.+......++.+.+
T Consensus 251 l~ivR~ea-~YF~PQ~qT-----kVMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 251 LRIVRKEA-QYFYPQRQT-----KVMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HHHHHHHH-HHhcchHHH-----HHhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 34444544 455433332 2579999999999999988877666555555544
No 45
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=40.78 E-value=1.6e+02 Score=32.45 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHhccCCCcH--------HHHHHH----HHHHHHHHHHHhccChhHHHH-H
Q 002818 566 ETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLDY-L 631 (876)
Q Consensus 566 ~~~ra~li~D~~~la~~g-~l~~~~~l~l~~~l~~e~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~~-~ 631 (876)
+.+|.++|+|+....-++ -++|..=|.+++.-++|-.+ .+|... ..-|..|.+.+... |+..+. +
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 678999999986555544 56888888888877766554 445431 12244555555432 333222 3
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhhcCCCCCCCCcchhh
Q 002818 632 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRK 703 (876)
Q Consensus 632 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 703 (876)
..|+.+++.. ...-+|. ++..|...|.+ +|...|...|..|.. ..+|++|.+
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQ 443 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQ 443 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHH
Confidence 3444444442 2234454 55667889987 999999999999974 357888866
No 46
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.36 E-value=2.6e+02 Score=31.85 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=46.0
Q ss_pred EecCCCCeEEEEEEEEEEEECC--CCEEEEEecC---ceeeEEEEEeccCCCCcc--ccCeeEEEecCCeEEEEEeCCCC
Q 002818 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKA--LEPTKVELVEADEILVLEFAETL 96 (876)
Q Consensus 24 ~~d~~~~~~~G~v~I~~~~~~~--~~~i~L~~~~---l~i~~v~i~~~~~~~~~~--~~~~~~~~~~~~~~l~i~l~~~L 96 (876)
++|+.+....=++.|++++... .+...|-... -.+..+.+...+...... .....+.-....+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666677777776544 3455443332 223333332211111000 11122222233456899999999
Q ss_pred CCc-eEEEEEEEEe
Q 002818 97 PTG-MGVLAIGFEG 109 (876)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (876)
.|| +.+|.+.|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888753
No 47
>PRK02870 heat shock protein HtpX; Provisional
Probab=40.34 E-value=58 Score=35.50 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHH
Q 002818 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (876)
Q Consensus 241 ~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (876)
.++++-+....|+|+ .+++-++-.+...+-++. .-+.|.+.+. ++ +. -+...+..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 344555555567543 355555433322222221 1244555444 33 11 13456889999999996
No 48
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=38.88 E-value=32 Score=38.41 Aligned_cols=108 Identities=21% Similarity=0.208 Sum_probs=57.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCCCcccccccceeeecccccccCCCc-hhHHHHHHHH
Q 002818 227 VGKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHS-AAANKQRVAT 303 (876)
Q Consensus 227 ~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k--~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~-~~~~~~~~~~ 303 (876)
++....+..+...+....+||.+.||.. .++. +.++..-.|. ---+| .......++|..... .-.....-..
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr~-S~Dn~g~~l~s~vHyG-~~ynN---AfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGRN-SYDNNGMPLVSTVHYG-KNYNN---AFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhccc-CcCCCCCceEEEEeec-ccccc---ccccCceeEeecCCcceecccccccc
Confidence 3334455667778899999999999933 4433 4444433321 01111 111112233322110 0000111246
Q ss_pred HHHHHHHHHH---hcCccCccccchhhhhhHHHHHHHHHHh
Q 002818 304 VVAHELAHQW---FGNLVTMEWWTHLWLNEGFATWVSYLAA 341 (876)
Q Consensus 304 ~iaHElaHqW---fGn~Vt~~~w~d~WL~EGfa~y~~~~~~ 341 (876)
++||||.|-- --+++.-..- -=|||+|+.-+.-.+.
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~ 378 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIE 378 (507)
T ss_pred eehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHH
Confidence 8999999954 4455554432 2589999999985543
No 49
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=38.86 E-value=51 Score=27.40 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCC--cccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 002818 243 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (876)
Q Consensus 243 ~l~~~e~~~g~~yP~~k~~~V~~p~~~~--g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (876)
+...+|..||.+ |.+..+-.-|.-.. ..|..- -++.... +.+.+..-... ...-..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~A~-A~T~G~~-I~f~~g~~~~~-s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALGAR-AFTVGND-IYFAPGKYNPD-SPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccCCe-EEEECCE-EEEcCCCcCCC-CCCcchhHhHHHHHHH
Confidence 456789999954 66665544332211 111111 2233333 33322110000 0013468999999964
No 50
>PRK01345 heat shock protein HtpX; Provisional
Probab=38.86 E-value=67 Score=34.78 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 002818 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (876)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (876)
..++++-+.+..|+| .+++-++-.+....-+... -+.|.+.+. |+-. .+...+..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 456677777788875 4565544333222222211 123444433 3321 123568999999999976554
No 51
>PRK03001 M48 family peptidase; Provisional
Probab=36.97 E-value=60 Score=34.53 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCc--cc-ccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 002818 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG--AM-ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (876)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g--~m-e~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (876)
..+.++-+.+..|+|. +++-++-.+...+- |. ...+.|...+. ++ +. -+...+..++|||++|-=-++
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLINEDQPNAFATGRNPEHAAVAATTG-IL-RV-----LSEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEecCCCcceEEecCCCCCeEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhCCC
Confidence 4456666677788654 55544432211111 11 11223444433 22 11 134568899999999975443
No 52
>PRK03072 heat shock protein HtpX; Provisional
Probab=36.57 E-value=70 Score=34.13 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-cc--cceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 002818 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-NY--GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (876)
Q Consensus 239 ~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me-~~--gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (876)
...+.++-+.+..|+ |.|++-++-.+...+-+.. ++ +.+..... ++ +. -+.+.+..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 345667777778886 5677665544332211111 11 12332222 33 11 13456889999999996544
Q ss_pred C
Q 002818 316 N 316 (876)
Q Consensus 316 n 316 (876)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 53
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=36.43 E-value=24 Score=30.69 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHh
Q 002818 300 RVATVVAHELAHQWF 314 (876)
Q Consensus 300 ~~~~~iaHElaHqWf 314 (876)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 356789999999993
No 54
>PRK05457 heat shock protein HtpX; Provisional
Probab=35.70 E-value=53 Score=34.91 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccc---ccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 002818 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (876)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~m---e~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (876)
..+.++-+.+..|+ |.|++.++-.+...+-+. ..-+.|.+... ++- .-+.+.+..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~------~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ------NMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh------hCCHHHHHHHHHHHHHHHHcCC
Confidence 34556666777775 577777665433222121 12233444443 221 1134568899999999986654
No 55
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=35.05 E-value=75 Score=25.74 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC
Q 002818 395 GASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (876)
Q Consensus 395 g~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~ 442 (876)
=+.+|.+|...++.+.+ ..|..++++++-+-++-++|.+.+....|.
T Consensus 11 F~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 36789999999999885 456667777888889999999999998884
No 56
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=34.94 E-value=26 Score=34.52 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 002818 296 ANKQRVATVVAHELAHQWFGNL 317 (876)
Q Consensus 296 ~~~~~~~~~iaHElaHqWfGn~ 317 (876)
-....+..++.|||||.++|+-
T Consensus 77 l~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCCc
Confidence 3455788999999999998873
No 57
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.61 E-value=5.5e+02 Score=31.90 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=72.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChh----HHHHHHHHHHHHH
Q 002818 565 SETDRFGILDDHFALCMARQQTL-TSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPE----LLDYLKQFFISLF 639 (876)
Q Consensus 565 ~~~~ra~li~D~~~la~~g~l~~-~~~l~l~~~l~~e~~~~~w~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~l~ 639 (876)
+...|-|+-.=.-.-..+.+... ..+++-++++-+.++...|..++-.|..+-+.++....+ ....+..++-.++
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 56667766444434444444432 456777777767788889999999998888777521122 3334444444443
Q ss_pred HHHHHHcCCccCCCCCHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHhhc-------CCC---CCCCCcchhh
Q 002818 640 QNSAEKLGWDSKPGESHLDALLRGEI---FTALALLGHKETLNEASKRFHAFLA-------DRT---TPLLPPDIRK 703 (876)
Q Consensus 640 ~~~~~~l~~~~~~~~~~~~~~lr~~i---l~~ac~~g~~~c~~~A~~~f~~~~~-------~~~---~~~i~~~lr~ 703 (876)
+-...-+. .++..-..+...| ...+|.+..+.-. .+.+.|..|+. .+- .-.++|+.|+
T Consensus 182 ~~~~~ll~-----~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 182 QIFNGLLS-----QESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 33222221 2233333444444 4566666654322 34455666652 221 2347788886
No 58
>PRK09687 putative lyase; Provisional
Probab=34.55 E-value=5.8e+02 Score=27.00 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 002818 717 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFL 760 (876)
Q Consensus 717 ~~~~~~~l~~~y~~~~~~~ek~~il~aL~c~~d~~~l~~~L~~~ 760 (876)
+....+.|..... ..+..-|...+.+||...++..+..+++.+
T Consensus 190 ~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~~~~av~~Li~~L 232 (280)
T PRK09687 190 NPDIREAFVAMLQ-DKNEEIRIEAIIGLALRKDKRVLSVLIKEL 232 (280)
T ss_pred CHHHHHHHHHHhc-CCChHHHHHHHHHHHccCChhHHHHHHHHH
Confidence 4444455555543 334445666666666666666655555554
No 59
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=34.18 E-value=26 Score=34.15 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 002818 301 VATVVAHELAHQW 313 (876)
Q Consensus 301 ~~~~iaHElaHqW 313 (876)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 60
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=33.44 E-value=1.6e+02 Score=27.90 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=24.1
Q ss_pred eEEEEEEcCCcc---chHHHHHHHHHHHHHHHHHHhCCC
Q 002818 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVP 254 (876)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~~g~~ 254 (876)
.++++|..+... .......+.+.+++..+++..++.
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~ 40 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLK 40 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeE
Confidence 467888877642 234456677888888888876533
No 61
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=33.33 E-value=2.3e+02 Score=31.18 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHH-H----------
Q 002818 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELA-H---------- 311 (876)
Q Consensus 243 ~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEla-H---------- 311 (876)
+=++..+|++ .. --+..+...++..+++|-.-+-|.++.+.. .....+..++.||+. |
T Consensus 118 ~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~Q 186 (349)
T PF08014_consen 118 LQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRAQ 186 (349)
T ss_pred HHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccccC
Confidence 3344556666 22 224555555777777776555555555422 234568889999994 4
Q ss_pred --HHhcCccCccccchhhhhhHHHHHHHHHH
Q 002818 312 --QWFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (876)
Q Consensus 312 --qWfGn~Vt~~~w~d~WL~EGfa~y~~~~~ 340 (876)
.|++...-+. .=..||+|.+.+++.
T Consensus 187 Pl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 187 PLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred CcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 2333222111 123799999999764
No 62
>PRK04897 heat shock protein HtpX; Provisional
Probab=33.26 E-value=61 Score=34.77 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 002818 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (876)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (876)
..+.++-+.+..|+ |.|++-++-.+...+-+.. .-+.|.+... ++- .-+.+.+..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 45666777777775 5677766543322111111 1233444432 221 1134568899999999965443
No 63
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=32.45 E-value=75 Score=29.80 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCchhHHHHHHHHHHHHHHHHH
Q 002818 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (876)
Q Consensus 239 ~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (876)
...+.++-.+..|+.+||.++...-.- .-..|+ -.+..+.|=++|..-.......+..+|.|||||-
T Consensus 6 ~L~~~~~~as~~~~r~~~~p~~~~n~R-g~taG~------ayL~~~~I~lNP~ll~en~~~f~~~vV~HELaHl 72 (156)
T COG3091 6 KLQQCVEQASLKFFRKFFRPKASYNQR-GRTAGG------AYLLKSEIRLNPKLLEENGEDFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHhcCCCCCcceehhhh-hhhcch------hhccccccccCHHHHHHccHHHHHHHHHHHHHHH
Confidence 344555555666655898887653211 111111 1111112222332222223345778999999974
No 64
>PRK10301 hypothetical protein; Provisional
Probab=31.33 E-value=2.8e+02 Score=25.35 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.4
Q ss_pred CCeEEEEEeCCCCCCceEEEEEEEEe
Q 002818 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (876)
Q Consensus 84 ~~~~l~i~l~~~L~~g~~~l~i~y~g 109 (876)
+...+.+.++.+|++|.|+|+-+-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34568888888899999987755444
No 65
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.76 E-value=2.3e+02 Score=25.07 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcchHHHHHHhhccCCCHHHHHHHHHHHhc--------------CCCchHHHHHHHHHHHHH
Q 002818 784 AWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSS--------------RCKPYIARTLRQSIERVQ 849 (876)
Q Consensus 784 ~~~fl~~n~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~~~~f~~~--------------~~~~~~~~~~~~~le~i~ 849 (876)
.|+|+++||..|..-++. ....+.--+.+.+.+.++++++.+=+.. -|+..--+.++..+..++
T Consensus 1 ~~~~~~~~w~ii~a~~~~--~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGI--AGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred ChHHHHhCcHHHHHHHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 389999999988776532 1223333456677787777777443332 232233345555565555
Q ss_pred HHHHHHHH
Q 002818 850 INAKWVES 857 (876)
Q Consensus 850 ~ni~W~~~ 857 (876)
..++=.+.
T Consensus 79 G~~~~l~~ 86 (106)
T PF10805_consen 79 GELKELSA 86 (106)
T ss_pred hHHHHHHH
Confidence 55544443
No 66
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=30.54 E-value=1e+02 Score=33.18 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--------CCCccEEEecCCCCcccc-cccceeeecccccccCCCchhHHHHHHH
Q 002818 232 QGKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVA 302 (876)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~~g~~yP--------~~k~~~V~~p~~~~g~me-~~gli~~~e~~ll~~~~~~~~~~~~~~~ 302 (876)
+.+..++...++++...++.|++.+ .++..+|.-+....|.|- ..+-|.+.... .+.- -.......-.
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~-l~~~~~~~~~ 220 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNEL-LNPNPLRKGG 220 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHH-H-HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--Hhcc-cCHhHcCCCC
Confidence 3556777888899999999998874 233377777877767777 33344444330 0000 0011111135
Q ss_pred HHHHHHHHHHHhcCccCccccchhhhhhHHHHHHHHHHhhhhCc
Q 002818 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (876)
Q Consensus 303 ~~iaHElaHqWfGn~Vt~~~w~d~WL~EGfa~y~~~~~~~~~~~ 346 (876)
-.+.||+.|+-= ..+=.|.. +-|.-...++.+......+
T Consensus 221 WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 221 WGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 579999999742 22112333 5677777777666655543
No 67
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.48 E-value=2.3e+02 Score=33.61 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=14.6
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHH
Q 002818 590 LLTLMASYSEETEYTVLSNLITISYKIGR 618 (876)
Q Consensus 590 ~l~l~~~l~~e~~~~~w~~~~~~l~~l~~ 618 (876)
++.++.+++.+.|........+.|+.|..
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLn 289 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILN 289 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHh
Confidence 44455555555555555555555544433
No 68
>PRK01265 heat shock protein HtpX; Provisional
Probab=29.92 E-value=99 Score=33.51 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 002818 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (876)
Q Consensus 241 ~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (876)
.+.++-+.+..|+ |.+++-++-.+...+-+... -+-|...+. ++ +. -+...+..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHHHcc
Confidence 4556666677775 46666555433211111111 123444433 22 11 13456889999999995443
No 69
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=29.66 E-value=51 Score=32.69 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002818 299 QRVATVVAHELAHQW 313 (876)
Q Consensus 299 ~~~~~~iaHElaHqW 313 (876)
.....++||||+|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 345689999999987
No 70
>PRK02391 heat shock protein HtpX; Provisional
Probab=28.03 E-value=1.4e+02 Score=31.91 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcC
Q 002818 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (876)
Q Consensus 240 ~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~~g~me---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (876)
..+.++-+.+..|+| .+++-++-.+.....+.. .-+.|.+.+. ++- . -+...+..++|||++|---++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMR-R-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 345556666777764 566666554322222211 1223444332 221 1 123568899999999976654
No 71
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=28.03 E-value=1.4e+02 Score=30.25 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 002818 301 VATVVAHELAHQW 313 (876)
Q Consensus 301 ~~~~iaHElaHqW 313 (876)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 72
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=26.92 E-value=3.5e+02 Score=25.34 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=35.0
Q ss_pred CCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 002818 696 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLS 762 (876)
Q Consensus 696 ~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~-~~ek~~il~aL~c~~d~~~l~~~L~~~l~ 762 (876)
.|.++-|..|.-++++- -|-+|..+-..... ...|..||+.|++.++++ +.-++++++.
T Consensus 80 ~I~~ehR~~l~pvvlRI-------Lygk~~~~~~~~~~~~~rR~aIL~~L~~l~~~E-l~~Fl~l~~~ 139 (141)
T PF07539_consen 80 VIEEEHRPELMPVVLRI-------LYGKMQSRKGSGSKKASRRAAILRFLAGLSEEE-LGLFLDLMLE 139 (141)
T ss_pred CCCHHHHhHHHHHHHHH-------HHHHHhhcCCCCCcchHHHHHHHHHHhCCCHHH-HHHHHHHHhc
Confidence 47777777555544331 13333333222222 267888999999887766 5677777654
No 73
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=26.70 E-value=37 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=22.4
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCChHHH
Q 002818 402 LQNYLGAECFQRSLASYIKKYACSNAKTEDL 432 (876)
Q Consensus 402 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~df 432 (876)
++.+||++.|.+..+.|+.++.-.+.+..++
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~~ 85 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLNDY 85 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGGH
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4567899999999999999988666654433
No 74
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=25.86 E-value=77 Score=31.75 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=19.5
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHhcCccC
Q 002818 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (876)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt 319 (876)
+|++........-.+-.+|||||.|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 334444444455567789999999976443333
No 75
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=25.49 E-value=1.6e+02 Score=35.58 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=45.9
Q ss_pred EEEEEEcCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCC--------Ccccccc----cceeeeccccc
Q 002818 220 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--------AGAMENY----GLVTYRETALL 287 (876)
Q Consensus 220 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~~g~~yP~~k~~~V~~p~~~--------~g~me~~----gli~~~e~~ll 287 (876)
.+++|..++.....+.+.+.....+.+=..++...-|.+...++..-.+. .|+|=+. |++.+.+.
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 46788888776666666666667777766666634455554444432221 2333332 22222221
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHH
Q 002818 288 YDDQHSAAANKQRVATVVAHELAHQ 312 (876)
Q Consensus 288 ~~~~~~~~~~~~~~~~~iaHElaHq 312 (876)
.....+.++||||+|.
T Consensus 319 ---------~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 ---------ILLAFAVVLAHELGHN 334 (716)
T ss_pred ---------cchhHHHHHHHHHHhh
Confidence 1234688999999995
No 76
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=25.20 E-value=86 Score=31.23 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002818 298 KQRVATVVAHELAHQ 312 (876)
Q Consensus 298 ~~~~~~~iaHElaHq 312 (876)
....+.++|||++|.
T Consensus 128 ~~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 128 GLSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 345778999999995
No 77
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=24.71 E-value=2e+02 Score=26.34 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.7
Q ss_pred cCCeEEEEEeCCCCCCceEEEEEEE
Q 002818 83 EADEILVLEFAETLPTGMGVLAIGF 107 (876)
Q Consensus 83 ~~~~~l~i~l~~~L~~g~~~l~i~y 107 (876)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677788888999999988888
No 78
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=24.64 E-value=2.4e+02 Score=28.57 Aligned_cols=40 Identities=20% Similarity=0.025 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcCccC-----ccccchhhhhhHHHHHHHHH
Q 002818 300 RVATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYL 339 (876)
Q Consensus 300 ~~~~~iaHElaHqWfGn~Vt-----~~~w~d~WL~EGfa~y~~~~ 339 (876)
+-..++|||++|-|+....- ...|...=..|--|++++..
T Consensus 71 r~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 71 RKRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 44578999999999986542 12222333456667776644
No 79
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=24.44 E-value=2.1e+02 Score=27.93 Aligned_cols=66 Identities=17% Similarity=0.367 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCCCCCCccEEEe--cCCCCcccc--cccceeeecccccccCCCchhHHHHHHHHHHHHHHHHHHhcCccC
Q 002818 244 LELYKEYFAVPYSLPKLDMIAI--PDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (876)
Q Consensus 244 l~~~e~~~g~~yP~~k~~~V~~--p~~~~g~me--~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn~Vt 319 (876)
++-+++ .|.+ |.+.-.++.. |+...||.. ..|+++.... + ..+..+..+++|||.|.|=--...
T Consensus 22 ~~~~~~-~gc~-~~~~~~i~c~~C~~~~~Ggf~p~~~~I~lC~N~-~---------~~~~~l~~~l~HELIHayD~cr~k 89 (173)
T PF09768_consen 22 MEALKK-LGCP-PVPPRHIKCEPCDSSVSGGFDPSKKGIVLCQNR-I---------RSQGHLEDTLTHELIHAYDHCRAK 89 (173)
T ss_pred HHHHHH-cCCC-CCCCCCeEEEECcCCCcCCccCCCCCEEEeeCC-C---------CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444 4545 3444444444 444445543 3444443322 2 234567899999999998433333
Q ss_pred cc
Q 002818 320 ME 321 (876)
Q Consensus 320 ~~ 321 (876)
.+
T Consensus 90 vD 91 (173)
T PF09768_consen 90 VD 91 (173)
T ss_pred CC
Confidence 33
No 80
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=22.85 E-value=3.7e+02 Score=29.24 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 002818 664 EIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSS 743 (876)
Q Consensus 664 ~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~ek~~il~a 743 (876)
-|-+.+++.+..+-.....+.+.. +|.....++ |..+..+ .=+++--+.+.++...+.+......+++|
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~---------lP~~vl~aL-~~~LEh~-~l~~~l~~~l~~~~~~~~d~~~~~a~lRA 239 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPH---------LPPEVLYAL-CGCLEHQ-PLPDKLAEALLERLEQAPDLELLSALLRA 239 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhh---------CChHHHHHH-HHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 366777777766533232222222 344333322 3222222 23556678888888888888999999999
Q ss_pred hCCCCCHHHHHHHHHHhccC-cCccccc
Q 002818 744 LASCPDVNIVLEVLNFLLSS-EVRSQDA 770 (876)
Q Consensus 744 L~c~~d~~~l~~~L~~~l~~-~i~~qd~ 770 (876)
||++.........++.++.. .....|+
T Consensus 240 ls~~~~~~~~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 240 LSSAPASDLVAILIDALLQSPRLCHPEV 267 (340)
T ss_pred HcCCCchhHHHHHHHHHhcCcccCChHH
Confidence 99999998888878887765 2344443
No 81
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=22.59 E-value=1.8e+02 Score=31.10 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHh
Q 002818 823 REVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKEL 871 (876)
Q Consensus 823 ~~~~~f~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~v~~wl~~~ 871 (876)
-.++.|.+........+.+++-++.|+.|..|.++.+.. ..|..|.++.
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~ 284 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESEL 284 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhc
Confidence 568888888766788899999999999999999987655 4477887754
No 82
>PF13205 Big_5: Bacterial Ig-like domain
Probab=22.58 E-value=5e+02 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.2
Q ss_pred cCCeEEEEEeCCCCCCc-eEEEEEEEE
Q 002818 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (876)
Q Consensus 83 ~~~~~l~i~l~~~L~~g-~~~l~i~y~ 108 (876)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 66689999999999999 999998544
No 83
>PRK09687 putative lyase; Provisional
Probab=22.08 E-value=9.5e+02 Score=25.37 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHH--HHHHHHHHHHhhcCCCCCCCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCCHHH
Q 002818 659 ALLRGEIFTALALLGHKET--LNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE 736 (876)
Q Consensus 659 ~~lr~~il~~ac~~g~~~c--~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~~~e 736 (876)
..+|......+...+...+ ...+...+...+.+ . ++..|..+-.++. +.++....+.|....+ ..++.-
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~---~~~VR~~a~~aLg---~~~~~~ai~~L~~~L~-d~~~~V 175 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--K---STNVRFAVAFALS---VINDEAAIPLLINLLK-DPNGDV 175 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhC--C---CHHHHHHHHHHHh---ccCCHHHHHHHHHHhc-CCCHHH
Confidence 3455555555544443222 12233444443333 1 4567774433332 3567788888888775 455678
Q ss_pred HHHHHHHhCC--CCCHHHHHHHHHHhccC--cCccccceeeee-eccccHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 002818 737 KTRILSSLAS--CPDVNIVLEVLNFLLSS--EVRSQDAVYGLA-VSIEGRETAWKWLKDNWDHISKTWGSGFLITRFISS 811 (876)
Q Consensus 737 k~~il~aL~c--~~d~~~l~~~L~~~l~~--~i~~qd~~~~~~-v~~~g~~~~~~fl~~n~~~i~~~~~~~~~l~~~i~~ 811 (876)
|.....|||. ..++..+.-++..+-+. .||. .++. ++.-+...+...|.+- +.++......+.+
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~----~A~~aLg~~~~~~av~~Li~~-------L~~~~~~~~a~~A 244 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRI----EAIIGLALRKDKRVLSVLIKE-------LKKGTVGDLIIEA 244 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHH----HHHHHHHccCChhHHHHHHHH-------HcCCchHHHHHHH
Confidence 8889999995 44676665555544222 1221 1222 3333444444443332 2233223355555
Q ss_pred hhccCCCHHHHHHHHHHHhcCCCc
Q 002818 812 IVSPFASYEKVREVEEFFSSRCKP 835 (876)
Q Consensus 812 ~~~~~~t~~~~~~~~~f~~~~~~~ 835 (876)
+ +.+.+++-+.-++...+..+++
T Consensus 245 L-g~ig~~~a~p~L~~l~~~~~d~ 267 (280)
T PRK09687 245 A-GELGDKTLLPVLDTLLYKFDDN 267 (280)
T ss_pred H-HhcCCHhHHHHHHHHHhhCCCh
Confidence 4 5677888888888888765543
No 84
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.50 E-value=4.9e+02 Score=26.56 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=61.4
Q ss_pred CCCcchhhhhheeeeeecccCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCCHHHHHHHHHHhccCcCccccce-ee
Q 002818 696 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAV-YG 773 (876)
Q Consensus 696 ~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~~~~-~~ek~~il~aL~c~~d~~~l~~~L~~~l~~~i~~qd~~-~~ 773 (876)
.||+.++..+-+.. .=|..+|+.-.+....... +..-..|+.+|.+..++.+.-+++... .+...+.+.. ..
T Consensus 74 ~ip~~~~~~~~g~W-----~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~-~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 74 GIPPKYIKFIQGFW-----LLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAV-GPPLSSPEALTLY 147 (226)
T ss_pred CCCHHHHHHHHHHH-----HhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc-CCCCCCHHHHHHH
Confidence 48888876433222 2255678777776655433 444557999999999999888888764 3334444433 33
Q ss_pred ee-eccccHHHHHHHHHHHHHHH
Q 002818 774 LA-VSIEGRETAWKWLKDNWDHI 795 (876)
Q Consensus 774 ~~-v~~~g~~~~~~fl~~n~~~i 795 (876)
+. ++.+...-||.|.+..-+..
T Consensus 148 ~~~La~~~v~EAf~~~R~~~~~~ 170 (226)
T PF13934_consen 148 FVALANGLVTEAFSFQRSYPDEL 170 (226)
T ss_pred HHHHHcCCHHHHHHHHHhCchhh
Confidence 44 66778888999988766543
Done!