Query 002819
Match_columns 876
No_of_seqs 484 out of 2467
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 11:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 3.2E-55 7E-60 505.9 15.7 826 6-864 160-1097(1100)
2 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 6.8E-40 1.5E-44 336.5 18.2 192 165-376 1-192 (192)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.5E-39 3.3E-44 334.5 19.9 189 166-372 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.9E-39 4.1E-44 336.0 20.5 197 163-375 2-202 (203)
5 cd04390 RhoGAP_ARHGAP22_24_25 100.0 6.5E-39 1.4E-43 330.9 19.6 191 164-372 1-199 (199)
6 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 9.7E-39 2.1E-43 333.7 20.0 200 165-376 1-209 (216)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 1.9E-38 4E-43 324.4 20.3 185 166-367 1-186 (186)
8 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1.5E-38 3.3E-43 333.0 19.3 209 163-375 2-217 (220)
9 KOG1451 Oligophrenin-1 and rel 100.0 4.6E-37 1E-41 341.9 31.8 306 14-378 260-573 (812)
10 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.2E-38 2.6E-43 324.8 17.5 176 166-374 1-181 (182)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 2.6E-38 5.7E-43 325.6 18.2 190 164-367 1-195 (195)
12 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.8E-38 6.1E-43 329.6 18.6 192 166-376 1-211 (213)
13 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 8E-38 1.7E-42 322.2 19.5 190 165-372 1-196 (196)
14 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 6.6E-38 1.4E-42 322.4 18.5 190 162-372 2-195 (195)
15 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 6E-38 1.3E-42 321.2 18.0 184 164-367 1-188 (188)
16 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 9.2E-38 2E-42 319.5 18.7 183 166-367 1-187 (187)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.6E-37 3.5E-42 320.9 19.1 186 166-367 1-200 (200)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.9E-37 4.1E-42 317.0 18.6 184 166-366 1-185 (186)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 2.1E-37 4.6E-42 320.5 18.9 195 165-376 1-199 (202)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 3.4E-37 7.3E-42 319.8 19.4 187 177-376 6-204 (206)
21 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 3.6E-37 7.9E-42 323.7 18.7 188 165-372 1-225 (225)
22 cd04377 RhoGAP_myosin_IX RhoGA 100.0 7.1E-37 1.5E-41 312.7 19.5 185 166-367 1-186 (186)
23 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 4.7E-37 1E-41 315.1 18.2 185 166-372 1-192 (192)
24 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 4.8E-37 1E-41 314.9 17.5 177 165-374 1-189 (190)
25 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 7E-37 1.5E-41 316.9 18.7 187 166-367 1-203 (203)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 9.2E-37 2E-41 311.7 19.3 161 166-327 1-163 (185)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1.3E-36 2.8E-41 316.7 18.9 187 166-367 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 3.8E-36 8.3E-41 309.7 19.9 164 166-330 1-168 (196)
29 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.9E-36 1.1E-40 311.2 20.3 196 166-369 1-207 (207)
30 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 3.4E-36 7.4E-41 308.4 18.8 184 164-367 1-189 (189)
31 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 4.1E-36 8.9E-41 312.1 18.5 186 166-376 1-200 (208)
32 KOG4407 Predicted Rho GTPase-a 100.0 9.9E-37 2.2E-41 358.1 9.8 335 19-376 923-1358(1973)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 3E-35 6.5E-40 300.3 18.8 180 167-368 2-184 (184)
34 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 4.1E-35 8.8E-40 305.6 17.9 189 166-374 1-210 (212)
35 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 7.3E-35 1.6E-39 299.5 18.8 178 177-371 14-192 (193)
36 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 1.1E-34 2.4E-39 296.8 17.6 178 166-367 1-187 (187)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 2.4E-34 5.1E-39 297.8 17.8 171 178-367 26-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.1E-33 2.4E-38 291.2 17.8 176 170-368 5-184 (200)
39 smart00324 RhoGAP GTPase-activ 100.0 6.6E-31 1.4E-35 264.3 18.4 170 179-367 2-173 (174)
40 KOG1117 Rho- and Arf-GTPase ac 100.0 4.7E-31 1E-35 303.1 18.1 323 17-376 490-900 (1186)
41 KOG1450 Predicted Rho GTPase-a 100.0 1.5E-30 3.3E-35 299.7 17.7 318 34-373 270-649 (650)
42 KOG4270 GTPase-activator prote 100.0 4.4E-29 9.4E-34 287.2 28.7 204 159-378 140-349 (577)
43 KOG2200 Tumour suppressor prot 100.0 9.1E-30 2E-34 285.7 15.2 211 162-376 297-514 (674)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.7E-29 3.8E-34 264.8 16.2 142 179-327 49-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 6.7E-29 1.5E-33 246.9 18.7 168 181-367 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 2E-29 4.4E-34 291.3 11.5 185 159-376 893-1087(1112)
47 PF00620 RhoGAP: RhoGAP domain 100.0 2.7E-28 5.9E-33 239.2 11.0 145 181-326 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 2.3E-27 5.1E-32 258.6 13.6 201 157-377 245-450 (467)
49 KOG2710 Rho GTPase-activating 99.9 1.6E-26 3.5E-31 257.2 14.8 205 161-376 62-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 2.8E-27 6.1E-32 268.5 8.8 241 159-422 76-316 (741)
51 PF14389 Lzipper-MIP1: Leucine 99.9 6.8E-24 1.5E-28 191.6 10.4 87 614-700 1-88 (88)
52 KOG1453 Chimaerin and related 99.9 4.5E-24 9.8E-29 262.3 11.5 162 165-327 602-771 (918)
53 KOG3564 GTPase-activating prot 99.9 5.9E-22 1.3E-26 218.2 15.3 148 178-327 360-508 (604)
54 KOG4271 Rho-GTPase activating 99.7 1.1E-17 2.3E-22 196.1 7.9 160 163-323 915-1076(1100)
55 KOG1452 Predicted Rho GTPase-a 99.7 5.8E-17 1.2E-21 171.8 12.0 163 164-327 183-353 (442)
56 cd01233 Unc104 Unc-104 pleckst 99.7 5.9E-16 1.3E-20 143.3 11.8 91 19-124 2-98 (100)
57 cd04405 RhoGAP_BRCC3-like RhoG 99.6 1.2E-15 2.6E-20 158.7 13.4 185 164-376 20-232 (235)
58 cd01251 PH_centaurin_alpha Cen 99.6 1.7E-15 3.6E-20 141.2 11.1 91 21-125 1-101 (103)
59 cd01264 PH_melted Melted pleck 99.6 4.4E-15 9.6E-20 137.6 10.0 91 21-124 2-101 (101)
60 cd01238 PH_Tec Tec pleckstrin 99.6 7.6E-15 1.6E-19 137.5 9.7 94 20-123 1-106 (106)
61 cd01260 PH_CNK Connector enhan 99.6 1.3E-14 2.8E-19 132.8 10.9 92 21-123 2-96 (96)
62 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 1.6E-14 3.5E-19 132.6 10.7 90 22-123 2-93 (95)
63 cd01252 PH_cytohesin Cytohesin 99.5 4E-14 8.6E-19 136.1 12.0 96 20-127 1-116 (125)
64 cd01235 PH_SETbf Set binding f 99.5 3E-14 6.5E-19 130.9 10.3 90 21-124 1-101 (101)
65 cd01236 PH_outspread Outspread 99.5 6.1E-14 1.3E-18 130.9 9.2 90 21-122 1-102 (104)
66 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 1E-13 2.2E-18 142.8 11.6 144 182-327 8-166 (198)
67 cd01247 PH_GPBP Goodpasture an 99.5 1.2E-13 2.7E-18 125.9 10.6 89 22-122 2-90 (91)
68 cd01257 PH_IRS Insulin recepto 99.5 1.8E-13 4E-18 127.1 10.5 92 18-122 1-100 (101)
69 cd01241 PH_Akt Akt pleckstrin 99.5 3.2E-13 7E-18 125.6 11.2 97 19-123 1-101 (102)
70 cd01266 PH_Gab Gab (Grb2-assoc 99.4 6.7E-13 1.4E-17 124.6 10.2 88 22-123 2-107 (108)
71 cd01246 PH_oxysterol_bp Oxyste 99.4 8.9E-13 1.9E-17 118.0 10.4 91 21-123 1-91 (91)
72 cd01250 PH_centaurin Centaurin 99.4 9E-13 2E-17 118.7 9.5 92 21-122 1-93 (94)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 1.9E-12 4.1E-17 119.8 9.5 77 34-123 18-98 (98)
74 PF00169 PH: PH domain; Inter 99.3 1.1E-11 2.4E-16 111.4 12.2 101 19-124 1-103 (104)
75 cd01245 PH_RasGAP_CG5898 RAS G 99.3 3E-12 6.5E-17 118.3 8.4 88 21-122 1-97 (98)
76 cd01263 PH_anillin Anillin Ple 99.3 1.1E-11 2.4E-16 118.9 9.8 97 20-122 2-121 (122)
77 cd01253 PH_beta_spectrin Beta- 99.3 1.9E-11 4.2E-16 113.4 10.7 85 33-122 19-103 (104)
78 KOG0930 Guanine nucleotide exc 99.2 3.5E-11 7.5E-16 126.6 9.3 103 19-130 260-381 (395)
79 KOG4370 Ral-GTPase effector RL 99.2 3.4E-11 7.3E-16 132.6 8.4 172 179-383 70-282 (514)
80 cd01230 PH_EFA6 EFA6 Pleckstri 99.2 1.8E-10 3.8E-15 109.9 11.1 101 21-125 2-112 (117)
81 cd01237 Unc112 Unc-112 pleckst 99.1 4E-10 8.6E-15 105.0 10.0 91 29-124 12-103 (106)
82 PF15413 PH_11: Pleckstrin hom 99.1 3.3E-10 7.1E-15 107.4 9.7 98 21-123 1-112 (112)
83 KOG3565 Cdc42-interacting prot 99.1 1.8E-10 3.8E-15 136.9 7.8 146 179-326 217-366 (640)
84 cd01254 PH_PLD Phospholipase D 99.0 9.3E-10 2E-14 105.7 10.3 76 36-123 32-121 (121)
85 cd01219 PH_FGD FGD (faciogenit 99.0 2.2E-09 4.9E-14 99.8 11.5 95 19-125 2-100 (101)
86 smart00233 PH Pleckstrin homol 99.0 6.5E-09 1.4E-13 91.6 11.6 96 19-124 1-101 (102)
87 PF15409 PH_8: Pleckstrin homo 99.0 3.8E-09 8.3E-14 95.9 10.0 86 23-123 1-88 (89)
88 PF15410 PH_9: Pleckstrin homo 98.9 2.9E-09 6.3E-14 101.9 8.4 103 20-124 1-118 (119)
89 cd01256 PH_dynamin Dynamin ple 98.8 3.1E-08 6.7E-13 90.3 9.7 99 19-123 1-104 (110)
90 cd01249 PH_oligophrenin Oligop 98.7 5.6E-08 1.2E-12 90.4 10.1 96 21-121 1-102 (104)
91 cd00821 PH Pleckstrin homology 98.7 4.4E-08 9.5E-13 85.5 8.5 93 21-122 1-95 (96)
92 cd00900 PH-like Pleckstrin hom 98.7 1E-07 2.2E-12 83.9 10.4 96 22-123 2-99 (99)
93 cd01234 PH_CADPS CADPS (Ca2+-d 98.6 3.7E-08 7.9E-13 90.5 5.4 97 20-126 3-112 (117)
94 KOG0690 Serine/threonine prote 98.6 5.1E-08 1.1E-12 105.7 6.2 107 15-127 11-119 (516)
95 KOG4724 Predicted Rho GTPase-a 98.5 5.6E-08 1.2E-12 112.7 4.5 170 157-326 408-589 (741)
96 cd01243 PH_MRCK MRCK (myotonic 98.5 1.4E-06 3E-11 82.7 11.8 104 20-123 3-118 (122)
97 cd01220 PH_CDEP Chondrocyte-de 98.5 1.5E-06 3.1E-11 80.9 11.5 97 19-125 2-98 (99)
98 KOG1090 Predicted dual-specifi 98.4 1E-07 2.2E-12 113.5 2.5 93 18-124 1633-1731(1732)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 98.3 1.3E-06 2.9E-11 81.9 7.9 101 21-124 2-108 (114)
100 cd01242 PH_ROK Rok (Rho- assoc 98.3 1E-05 2.2E-10 76.0 11.4 103 21-125 2-111 (112)
101 KOG3640 Actin binding protein 98.2 2.3E-06 5E-11 102.5 6.9 104 16-125 987-1107(1116)
102 KOG2059 Ras GTPase-activating 98.1 7.4E-06 1.6E-10 96.1 7.7 113 18-144 564-683 (800)
103 PF08101 DUF1708: Domain of un 98.1 1.7E-05 3.7E-10 90.8 10.5 146 181-328 9-169 (420)
104 PF14593 PH_3: PH domain; PDB: 98.0 3.4E-05 7.3E-10 72.4 10.3 91 16-126 10-101 (104)
105 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.0005 1.1E-08 64.7 11.2 98 18-126 3-100 (104)
106 KOG3751 Growth factor receptor 97.7 0.0001 2.2E-09 84.4 7.8 104 19-125 317-425 (622)
107 PLN00188 enhanced disease resi 97.5 0.00038 8.2E-09 83.5 10.7 104 17-127 2-112 (719)
108 PTZ00267 NIMA-related protein 97.5 0.00025 5.4E-09 83.0 9.0 101 16-125 374-477 (478)
109 KOG0932 Guanine nucleotide exc 97.4 4.2E-05 9.1E-10 87.8 0.9 107 14-125 501-618 (774)
110 cd01239 PH_PKD Protein kinase 97.4 0.00047 1E-08 65.3 7.4 90 20-123 1-117 (117)
111 cd01261 PH_SOS Son of Sevenles 97.4 0.0013 2.7E-08 62.8 10.2 101 18-125 3-110 (112)
112 KOG0521 Putative GTPase activa 97.3 0.00027 5.7E-09 87.0 5.2 100 17-127 272-371 (785)
113 cd01258 PH_syntrophin Syntroph 97.1 0.0018 3.8E-08 61.3 7.5 97 22-122 2-107 (108)
114 cd01222 PH_clg Clg (common-sit 96.6 0.02 4.3E-07 53.4 10.5 94 17-124 2-95 (97)
115 cd01240 PH_beta-ARK Beta adren 96.5 0.0036 7.8E-08 58.8 4.7 94 18-125 2-99 (116)
116 KOG3543 Ca2+-dependent activat 96.4 0.00087 1.9E-08 77.8 0.3 108 16-127 461-568 (1218)
117 PF12814 Mcp5_PH: Meiotic cell 96.4 0.049 1.1E-06 52.7 12.1 99 24-125 14-122 (123)
118 KOG0248 Cytoplasmic protein Ma 96.3 0.0023 5E-08 75.4 3.0 96 17-125 247-342 (936)
119 PTZ00283 serine/threonine prot 96.3 0.013 2.9E-07 69.1 9.0 39 85-125 452-490 (496)
120 KOG1453 Chimaerin and related 96.3 0.0022 4.8E-08 80.8 2.6 161 165-326 462-668 (918)
121 cd01262 PH_PDK1 3-Phosphoinosi 96.2 0.022 4.7E-07 52.1 8.1 87 19-124 1-88 (89)
122 PLN02866 phospholipase D 96.2 0.031 6.8E-07 70.0 11.8 88 35-127 216-310 (1068)
123 PF15408 PH_7: Pleckstrin homo 96.1 0.0021 4.6E-08 57.7 1.0 87 22-123 1-96 (104)
124 KOG3531 Rho guanine nucleotide 95.8 0.0031 6.7E-08 75.9 1.1 84 34-125 937-1020(1036)
125 cd01221 PH_ephexin Ephexin Ple 95.8 0.1 2.2E-06 50.8 10.9 97 19-121 3-119 (125)
126 KOG3723 PH domain protein Melt 95.6 0.0066 1.4E-07 70.5 2.3 94 20-125 736-837 (851)
127 KOG1739 Serine/threonine prote 94.6 0.042 9.1E-07 63.1 4.9 94 19-125 24-117 (611)
128 KOG4424 Predicted Rho/Rac guan 94.5 0.051 1.1E-06 63.8 5.6 105 13-126 266-371 (623)
129 cd01232 PH_TRIO Trio pleckstri 94.2 0.88 1.9E-05 43.7 12.4 88 37-125 24-113 (114)
130 cd01224 PH_Collybistin Collybi 93.7 0.79 1.7E-05 43.7 10.8 100 19-122 2-105 (109)
131 PF15406 PH_6: Pleckstrin homo 93.3 0.15 3.3E-06 48.2 5.2 69 40-121 42-110 (112)
132 PF15404 PH_4: Pleckstrin homo 93.3 0.49 1.1E-05 49.1 9.5 35 21-57 1-35 (185)
133 KOG0804 Cytoplasmic Zn-finger 93.2 0.62 1.3E-05 53.6 10.8 110 585-701 347-456 (493)
134 cd01228 PH_BCR-related BCR (br 93.1 0.36 7.9E-06 44.7 7.4 90 18-124 2-94 (96)
135 KOG1449 Predicted Rho GTPase-a 92.4 0.022 4.7E-07 66.6 -1.8 177 163-376 207-390 (670)
136 KOG1449 Predicted Rho GTPase-a 92.4 0.031 6.7E-07 65.4 -0.7 72 294-376 1-74 (670)
137 KOG1117 Rho- and Arf-GTPase ac 91.9 0.11 2.3E-06 63.4 2.9 94 17-125 85-178 (1186)
138 COG1579 Zn-ribbon protein, pos 91.3 5.3 0.00011 43.2 14.6 70 582-651 10-82 (239)
139 cd01225 PH_Cool_Pix Cool (clon 90.9 1.2 2.6E-05 42.5 8.2 82 37-124 28-109 (111)
140 cd01226 PH_exo84 Exocyst compl 90.5 1.9 4.1E-05 40.6 9.1 79 38-124 20-98 (100)
141 PF10186 Atg14: UV radiation r 90.1 2.8 6.1E-05 45.7 11.8 123 579-702 24-155 (302)
142 KOG3549 Syntrophins (type gamm 90.0 0.53 1.1E-05 52.5 5.8 108 14-125 276-387 (505)
143 KOG0995 Centromere-associated 88.8 6.5 0.00014 46.9 13.7 100 583-699 222-327 (581)
144 KOG2391 Vacuolar sorting prote 88.6 8.4 0.00018 43.3 13.7 114 586-701 211-342 (365)
145 PF15405 PH_5: Pleckstrin homo 88.1 1.6 3.4E-05 43.2 7.1 36 88-123 99-134 (135)
146 KOG1737 Oxysterol-binding prot 88.0 0.45 9.8E-06 58.8 4.0 90 20-123 78-167 (799)
147 cd01227 PH_Dbs Dbs (DBL's big 88.0 4.6 0.0001 39.9 10.2 87 38-125 30-116 (133)
148 cd01231 PH_Lnk LNK-family Plec 86.5 3.4 7.4E-05 38.9 7.8 82 34-122 18-106 (107)
149 cd00089 HR1 Protein kinase C-r 84.1 2.7 5.9E-05 36.8 5.9 67 622-700 3-69 (72)
150 KOG0996 Structural maintenance 84.0 38 0.00082 43.9 17.5 88 609-697 801-895 (1293)
151 PF12240 Angiomotin_C: Angiomo 83.7 12 0.00026 39.4 11.2 71 606-689 13-87 (205)
152 KOG1738 Membrane-associated gu 83.5 0.34 7.4E-06 57.8 -0.1 57 19-79 562-619 (638)
153 PF15411 PH_10: Pleckstrin hom 82.1 16 0.00035 35.3 10.7 98 19-120 7-116 (116)
154 PF09755 DUF2046: Uncharacteri 82.1 15 0.00032 41.2 11.7 115 624-741 170-291 (310)
155 cd01248 PH_PLC Phospholipase C 82.1 9.3 0.0002 36.3 9.1 34 89-122 80-114 (115)
156 PF00038 Filament: Intermediat 81.7 8.4 0.00018 42.7 10.0 65 585-649 50-124 (312)
157 cd01223 PH_Vav Vav pleckstrin 81.1 9.1 0.0002 37.0 8.5 87 37-126 20-113 (116)
158 KOG4047 Docking protein 1 (p62 80.7 0.88 1.9E-05 52.8 1.9 103 17-124 6-117 (429)
159 PF00038 Filament: Intermediat 79.6 55 0.0012 36.3 15.6 118 581-698 74-198 (312)
160 PF09726 Macoilin: Transmembra 79.3 1.8E+02 0.0039 36.5 28.5 38 664-701 543-580 (697)
161 KOG0517 Beta-spectrin [Cytoske 78.2 0.048 1E-06 70.5 -9.9 105 16-125 2296-2410(2473)
162 PRK10884 SH3 domain-containing 77.4 24 0.00053 37.4 11.2 35 667-701 140-174 (206)
163 KOG0161 Myosin class II heavy 76.6 27 0.00058 47.9 13.7 79 618-696 1010-1092(1930)
164 KOG0248 Cytoplasmic protein Ma 75.2 1.3 2.8E-05 53.3 1.2 83 26-124 264-348 (936)
165 TIGR03185 DNA_S_dndD DNA sulfu 75.0 37 0.0008 42.0 13.7 106 584-703 184-292 (650)
166 PF15619 Lebercilin: Ciliary p 74.8 22 0.00047 37.4 9.9 36 584-619 14-49 (194)
167 PF12240 Angiomotin_C: Angiomo 72.1 1E+02 0.0022 32.7 13.9 118 582-699 17-155 (205)
168 KOG3727 Mitogen inducible gene 71.8 0.7 1.5E-05 54.4 -2.0 88 34-125 372-459 (664)
169 PF07106 TBPIP: Tat binding pr 70.7 19 0.0004 36.6 8.2 65 622-694 73-137 (169)
170 KOG1264 Phospholipase C [Lipid 70.3 1.8 4E-05 53.0 0.9 42 86-127 872-913 (1267)
171 PF08317 Spc7: Spc7 kinetochor 70.1 65 0.0014 36.4 13.1 100 602-701 127-244 (325)
172 COG1579 Zn-ribbon protein, pos 69.9 92 0.002 33.9 13.5 40 609-648 91-130 (239)
173 PF00769 ERM: Ezrin/radixin/mo 69.4 1.2E+02 0.0025 33.1 14.4 112 586-701 2-117 (246)
174 PRK11637 AmiB activator; Provi 69.4 32 0.0007 40.2 10.9 32 670-701 100-131 (428)
175 PF10168 Nup88: Nuclear pore c 68.5 66 0.0014 40.4 13.8 109 583-701 552-667 (717)
176 PRK11519 tyrosine kinase; Prov 68.0 91 0.002 39.1 15.0 87 597-693 244-331 (719)
177 TIGR01843 type_I_hlyD type I s 67.4 87 0.0019 35.8 13.8 26 673-698 210-235 (423)
178 PF03148 Tektin: Tektin family 66.9 50 0.0011 38.3 11.6 90 613-702 250-353 (384)
179 PF10186 Atg14: UV radiation r 66.9 1.3E+02 0.0029 32.6 14.6 45 583-627 64-108 (302)
180 PF12761 End3: Actin cytoskele 66.5 80 0.0017 33.3 11.7 115 560-700 74-194 (195)
181 KOG2129 Uncharacterized conser 66.4 29 0.00064 40.1 9.2 68 584-651 210-315 (552)
182 PRK11637 AmiB activator; Provi 66.4 1.2E+02 0.0027 35.4 14.9 89 580-696 168-256 (428)
183 KOG0977 Nuclear envelope prote 65.9 75 0.0016 38.5 12.9 98 579-696 110-231 (546)
184 PRK09841 cryptic autophosphory 65.6 82 0.0018 39.5 14.0 148 606-762 252-414 (726)
185 COG5185 HEC1 Protein involved 65.5 87 0.0019 37.0 12.7 40 662-701 326-365 (622)
186 KOG4674 Uncharacterized conser 65.2 29 0.00064 47.0 10.2 94 608-701 792-886 (1822)
187 PF08614 ATG16: Autophagy prot 65.0 70 0.0015 33.4 11.3 98 586-700 85-185 (194)
188 KOG4807 F-actin binding protei 64.1 0.16 3.4E-06 57.0 -8.8 121 583-706 419-546 (593)
189 KOG3551 Syntrophins (type beta 63.9 5.4 0.00012 45.5 2.9 105 18-124 291-401 (506)
190 KOG3523 Putative guanine nucle 63.8 13 0.00028 44.8 6.0 82 34-121 496-591 (695)
191 PF14197 Cep57_CLD_2: Centroso 62.5 35 0.00076 30.0 7.1 55 585-639 1-65 (69)
192 PF12128 DUF3584: Protein of u 61.6 82 0.0018 41.9 13.5 114 580-700 382-496 (1201)
193 PF05911 DUF869: Plant protein 60.4 62 0.0013 40.8 11.4 100 581-701 595-694 (769)
194 PF07888 CALCOCO1: Calcium bin 60.0 43 0.00093 40.4 9.5 51 594-648 141-191 (546)
195 PF08826 DMPK_coil: DMPK coile 60.0 44 0.00096 28.8 7.1 28 612-639 30-57 (61)
196 PF02403 Seryl_tRNA_N: Seryl-t 59.4 76 0.0016 29.7 9.4 85 608-699 14-100 (108)
197 PHA02562 46 endonuclease subun 59.4 1.9E+02 0.004 34.7 15.1 30 665-694 298-327 (562)
198 KOG1656 Protein involved in gl 59.1 1.8E+02 0.0038 31.0 12.5 47 559-608 7-54 (221)
199 KOG0705 GTPase-activating prot 58.8 7.5 0.00016 46.4 3.0 35 89-125 446-480 (749)
200 KOG4807 F-actin binding protei 58.7 2.1E+02 0.0045 33.2 13.9 82 35-125 33-115 (593)
201 TIGR01000 bacteriocin_acc bact 58.2 1.6E+02 0.0035 34.7 14.0 43 609-651 160-202 (457)
202 PLN02372 violaxanthin de-epoxi 57.6 32 0.00068 39.9 7.5 27 576-602 355-381 (455)
203 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.8 2E+02 0.0043 28.1 14.9 59 580-638 19-83 (132)
204 cd01255 PH_TIAM TIAM Pleckstri 56.7 73 0.0016 32.1 8.9 86 38-125 50-155 (160)
205 PRK09039 hypothetical protein; 55.6 1.8E+02 0.0039 33.3 13.3 18 583-600 47-64 (343)
206 PF13851 GAS: Growth-arrest sp 55.6 1.5E+02 0.0034 31.2 11.9 102 582-694 27-128 (201)
207 PF05508 Ran-binding: RanGTP-b 55.6 73 0.0016 35.8 9.7 81 585-691 45-136 (302)
208 PRK00409 recombination and DNA 55.0 1.7E+02 0.0036 37.3 14.0 79 579-677 517-595 (782)
209 KOG0612 Rho-associated, coiled 55.0 1.2E+02 0.0025 39.9 12.4 75 620-709 748-822 (1317)
210 KOG4236 Serine/threonine prote 54.7 13 0.00027 44.5 3.9 100 10-125 404-524 (888)
211 KOG1029 Endocytic adaptor prot 54.6 91 0.002 38.9 10.9 26 673-698 430-455 (1118)
212 PF02185 HR1: Hr1 repeat; Int 53.5 38 0.00083 29.4 5.9 60 628-701 1-61 (70)
213 PHA02562 46 endonuclease subun 52.7 1.9E+02 0.0041 34.6 13.7 58 581-639 298-355 (562)
214 PF06637 PV-1: PV-1 protein (P 52.3 1.7E+02 0.0037 33.8 11.9 60 580-639 302-374 (442)
215 TIGR02168 SMC_prok_B chromosom 52.2 2.1E+02 0.0046 37.2 14.9 26 672-697 914-939 (1179)
216 TIGR02231 conserved hypothetic 51.9 35 0.00076 40.9 7.3 38 663-700 135-172 (525)
217 TIGR02168 SMC_prok_B chromosom 50.8 2.4E+02 0.0052 36.7 15.1 18 835-852 993-1010(1179)
218 PF07889 DUF1664: Protein of u 49.6 1.5E+02 0.0033 29.2 9.9 67 585-693 57-123 (126)
219 PF08317 Spc7: Spc7 kinetochor 49.6 3.5E+02 0.0075 30.6 14.3 24 616-639 179-202 (325)
220 PF15397 DUF4618: Domain of un 49.3 1.3E+02 0.0029 33.0 10.4 29 673-701 200-228 (258)
221 PF07798 DUF1640: Protein of u 48.9 2.7E+02 0.0059 28.6 12.2 35 608-642 67-101 (177)
222 PF09726 Macoilin: Transmembra 48.7 6.6E+02 0.014 31.7 21.4 10 581-590 417-426 (697)
223 PRK09039 hypothetical protein; 48.4 2.9E+02 0.0062 31.7 13.4 33 581-613 52-84 (343)
224 PF04111 APG6: Autophagy prote 48.3 2.1E+02 0.0045 32.4 12.2 33 613-645 70-102 (314)
225 KOG1853 LIS1-interacting prote 48.2 3.7E+02 0.0081 29.6 13.1 33 666-698 140-182 (333)
226 PF07888 CALCOCO1: Calcium bin 47.7 3.7E+02 0.008 32.8 14.5 39 581-619 142-180 (546)
227 PF15175 SPATA24: Spermatogene 47.5 40 0.00086 33.9 5.5 80 629-711 39-125 (153)
228 TIGR02169 SMC_prok_A chromosom 47.5 2.9E+02 0.0062 36.1 15.1 16 181-196 116-131 (1164)
229 PRK02224 chromosome segregatio 47.3 2.6E+02 0.0055 35.8 14.3 57 583-639 280-339 (880)
230 PF14992 TMCO5: TMCO5 family 47.3 1E+02 0.0022 34.3 9.2 33 662-694 112-144 (280)
231 PF03962 Mnd1: Mnd1 family; I 47.1 1E+02 0.0023 32.2 8.9 28 666-693 103-130 (188)
232 PF02841 GBP_C: Guanylate-bind 46.7 3.1E+02 0.0066 30.5 13.1 36 607-642 222-257 (297)
233 TIGR01005 eps_transp_fam exopo 46.7 5.3E+02 0.011 32.5 16.7 107 664-770 286-428 (754)
234 smart00787 Spc7 Spc7 kinetocho 46.5 4.7E+02 0.01 29.6 14.6 48 581-636 147-194 (312)
235 PRK10884 SH3 domain-containing 46.5 2.1E+02 0.0046 30.4 11.2 31 670-700 136-166 (206)
236 KOG0018 Structural maintenance 46.2 3.5E+02 0.0075 35.4 14.4 115 580-705 650-764 (1141)
237 COG1196 Smc Chromosome segrega 46.2 3.3E+02 0.0071 36.3 15.3 20 831-850 973-992 (1163)
238 KOG0161 Myosin class II heavy 46.1 2.7E+02 0.0058 39.0 14.4 34 669-702 1086-1119(1930)
239 PF11559 ADIP: Afadin- and alp 45.8 3.1E+02 0.0066 27.2 11.8 21 677-697 130-150 (151)
240 KOG4424 Predicted Rho/Rac guan 45.3 29 0.00063 41.8 4.9 84 34-125 510-596 (623)
241 KOG4460 Nuclear pore complex, 45.2 2.7E+02 0.0058 33.8 12.4 122 580-711 572-700 (741)
242 COG2433 Uncharacterized conser 45.1 2.9E+02 0.0063 34.0 13.0 91 581-703 421-511 (652)
243 PF04156 IncA: IncA protein; 45.1 3.6E+02 0.0078 27.6 15.4 38 582-619 81-118 (191)
244 COG2433 Uncharacterized conser 44.8 1.2E+02 0.0027 37.0 9.9 104 580-683 427-541 (652)
245 PLN02678 seryl-tRNA synthetase 44.5 65 0.0014 38.2 7.7 74 621-701 33-106 (448)
246 PF06705 SF-assemblin: SF-asse 44.4 3.1E+02 0.0068 29.6 12.5 42 603-644 45-86 (247)
247 PF06637 PV-1: PV-1 protein (P 44.3 4.7E+02 0.01 30.5 13.8 94 586-702 282-378 (442)
248 TIGR03185 DNA_S_dndD DNA sulfu 44.2 2.6E+02 0.0057 34.6 13.3 99 582-699 421-521 (650)
249 PF03938 OmpH: Outer membrane 44.2 2.3E+02 0.005 28.0 10.7 75 606-702 35-109 (158)
250 PF06785 UPF0242: Uncharacteri 43.6 2.8E+02 0.0061 31.6 11.8 82 603-701 141-222 (401)
251 PRK13182 racA polar chromosome 43.5 1.5E+02 0.0033 30.7 9.4 30 610-639 81-110 (175)
252 PF11083 Streptin-Immun: Lanti 43.4 1E+02 0.0022 29.1 7.1 59 584-642 1-73 (99)
253 PRK05431 seryl-tRNA synthetase 43.4 1.3E+02 0.0028 35.4 10.0 73 622-701 29-101 (425)
254 PF09304 Cortex-I_coil: Cortex 43.3 1.6E+02 0.0035 28.2 8.6 16 584-599 4-19 (107)
255 KOG0996 Structural maintenance 42.7 3.2E+02 0.0069 36.1 13.4 70 583-654 364-438 (1293)
256 TIGR00606 rad50 rad50. This fa 42.1 2.8E+02 0.0061 37.4 13.9 122 570-698 780-920 (1311)
257 PRK02224 chromosome segregatio 41.8 3.1E+02 0.0067 35.0 13.8 24 829-854 816-839 (880)
258 KOG4673 Transcription factor T 41.8 3.1E+02 0.0067 34.2 12.5 105 579-703 663-769 (961)
259 PF07106 TBPIP: Tat binding pr 41.6 92 0.002 31.6 7.4 58 582-639 72-134 (169)
260 PF06248 Zw10: Centromere/kine 41.5 3.2E+02 0.007 33.4 13.4 105 579-700 11-116 (593)
261 PF13094 CENP-Q: CENP-Q, a CEN 41.3 3.2E+02 0.007 27.4 11.2 73 578-650 16-92 (160)
262 PF05667 DUF812: Protein of un 40.9 5.1E+02 0.011 32.0 14.7 24 667-690 441-464 (594)
263 PF07798 DUF1640: Protein of u 40.6 1.8E+02 0.0038 30.0 9.4 99 583-690 52-155 (177)
264 PF12128 DUF3584: Protein of u 40.5 3.7E+02 0.0081 36.0 14.5 24 829-852 896-919 (1201)
265 KOG4593 Mitotic checkpoint pro 40.3 6.2E+02 0.013 31.7 14.9 122 582-703 248-400 (716)
266 KOG0976 Rho/Rac1-interacting s 40.3 2.8E+02 0.0061 35.0 12.0 59 586-648 327-386 (1265)
267 KOG2129 Uncharacterized conser 40.2 6.9E+02 0.015 29.5 16.4 68 668-745 248-319 (552)
268 PRK03918 chromosome segregatio 40.2 4.8E+02 0.01 33.2 15.2 21 830-850 461-481 (880)
269 KOG2077 JNK/SAPK-associated pr 40.2 67 0.0015 38.7 6.7 54 586-639 319-375 (832)
270 PF09486 HrpB7: Bacterial type 39.6 4.4E+02 0.0095 27.0 12.5 99 602-701 14-114 (158)
271 PRK12704 phosphodiesterase; Pr 39.6 5.4E+02 0.012 31.2 14.5 36 673-708 117-152 (520)
272 TIGR03752 conj_TIGR03752 integ 39.3 2.2E+02 0.0049 33.9 10.8 29 669-697 112-140 (472)
273 TIGR01010 BexC_CtrB_KpsE polys 39.1 2.9E+02 0.0062 31.5 11.7 65 619-692 168-233 (362)
274 KOG0971 Microtubule-associated 39.0 4.7E+02 0.01 33.8 13.6 136 584-738 426-579 (1243)
275 KOG1029 Endocytic adaptor prot 38.9 5E+02 0.011 32.9 13.7 101 598-702 363-473 (1118)
276 KOG0977 Nuclear envelope prote 38.8 2.4E+02 0.0051 34.4 11.1 78 620-700 105-189 (546)
277 PRK04863 mukB cell division pr 38.6 4.8E+02 0.01 35.8 15.1 26 670-695 380-405 (1486)
278 PF08581 Tup_N: Tup N-terminal 38.5 1.5E+02 0.0032 26.9 7.3 52 588-639 24-75 (79)
279 KOG0993 Rab5 GTPase effector R 38.5 1.9E+02 0.0041 33.7 9.7 53 626-695 439-491 (542)
280 TIGR01843 type_I_hlyD type I s 38.3 4.3E+02 0.0094 30.1 13.2 24 673-696 246-269 (423)
281 KOG1937 Uncharacterized conser 38.1 4.3E+02 0.0092 31.4 12.5 128 573-701 284-424 (521)
282 PRK13729 conjugal transfer pil 38.1 87 0.0019 37.3 7.3 59 572-637 56-120 (475)
283 KOG4270 GTPase-activator prote 37.8 24 0.00052 42.8 2.8 154 157-324 31-195 (577)
284 PLN02320 seryl-tRNA synthetase 37.8 1.7E+02 0.0037 35.2 9.8 37 666-702 130-166 (502)
285 TIGR03319 YmdA_YtgF conserved 37.7 6.5E+02 0.014 30.5 14.8 21 617-637 58-78 (514)
286 KOG3915 Transcription regulato 37.5 1.5E+02 0.0032 35.1 8.7 62 587-652 501-566 (641)
287 PRK04863 mukB cell division pr 37.5 2.6E+02 0.0057 38.2 12.5 77 623-699 515-591 (1486)
288 TIGR03007 pepcterm_ChnLen poly 37.5 7.6E+02 0.017 29.2 15.5 34 668-701 312-345 (498)
289 KOG3520 Predicted guanine nucl 37.3 51 0.0011 42.9 5.6 45 85-129 682-726 (1167)
290 PF05266 DUF724: Protein of un 36.9 5.2E+02 0.011 27.2 12.2 27 670-696 156-182 (190)
291 PF07820 TraC: TraC-like prote 36.9 1.1E+02 0.0023 28.6 6.2 30 623-652 4-39 (92)
292 TIGR01837 PHA_granule_1 poly(h 36.8 2.6E+02 0.0056 27.1 9.2 20 674-693 97-116 (118)
293 PF09744 Jnk-SapK_ap_N: JNK_SA 36.2 1.5E+02 0.0034 30.2 7.9 66 625-696 54-119 (158)
294 PF14389 Lzipper-MIP1: Leucine 36.1 90 0.0019 28.7 5.7 56 583-638 9-78 (88)
295 TIGR02169 SMC_prok_A chromosom 35.9 6.2E+02 0.013 33.1 15.5 19 201-219 109-127 (1164)
296 PRK10929 putative mechanosensi 35.9 6.8E+02 0.015 33.3 15.4 110 581-694 172-286 (1109)
297 PF14282 FlxA: FlxA-like prote 35.7 2.2E+02 0.0047 27.0 8.4 62 625-706 23-84 (106)
298 PF10211 Ax_dynein_light: Axon 35.6 5.4E+02 0.012 26.9 13.8 67 615-697 121-187 (189)
299 PF10146 zf-C4H2: Zinc finger- 35.4 4.4E+02 0.0096 28.6 11.7 29 670-698 78-107 (230)
300 PF12325 TMF_TATA_bd: TATA ele 35.2 4.4E+02 0.0095 25.8 11.3 47 583-637 38-84 (120)
301 COG1196 Smc Chromosome segrega 34.9 6.3E+02 0.014 33.7 15.4 63 583-645 296-368 (1163)
302 PF09787 Golgin_A5: Golgin sub 34.8 4.6E+02 0.0099 31.6 13.0 98 601-702 212-310 (511)
303 KOG4674 Uncharacterized conser 34.7 3.4E+02 0.0073 37.6 12.5 108 581-694 1256-1374(1822)
304 PF11932 DUF3450: Protein of u 34.7 5.9E+02 0.013 27.5 12.8 35 613-647 41-75 (251)
305 PF14362 DUF4407: Domain of un 34.5 6.7E+02 0.015 27.7 15.5 89 608-701 129-217 (301)
306 COG4026 Uncharacterized protei 34.4 5.7E+02 0.012 27.7 11.8 26 671-696 175-200 (290)
307 TIGR00414 serS seryl-tRNA synt 34.4 2.6E+02 0.0056 32.8 10.6 74 622-702 31-105 (418)
308 cd07596 BAR_SNX The Bin/Amphip 34.1 3.2E+02 0.0069 28.0 10.2 39 663-701 142-180 (218)
309 KOG0612 Rho-associated, coiled 34.1 4.5E+02 0.0097 35.0 12.9 28 825-852 753-780 (1317)
310 PF04880 NUDE_C: NUDE protein, 34.0 62 0.0013 33.3 4.7 27 670-696 21-47 (166)
311 PRK11281 hypothetical protein; 33.9 4.5E+02 0.0097 35.0 13.4 41 599-639 212-252 (1113)
312 KOG0993 Rab5 GTPase effector R 33.9 2.1E+02 0.0046 33.3 9.2 76 612-698 105-187 (542)
313 KOG1118 Lysophosphatidic acid 33.8 7.6E+02 0.016 28.1 13.1 118 571-701 97-223 (366)
314 PF05557 MAD: Mitotic checkpoi 33.7 43 0.00094 41.9 4.3 79 620-698 453-535 (722)
315 PF05483 SCP-1: Synaptonemal c 33.5 4.4E+02 0.0095 32.9 12.1 120 583-702 609-768 (786)
316 PF06005 DUF904: Protein of un 33.3 1.3E+02 0.0029 26.7 6.1 28 666-693 11-38 (72)
317 PF10458 Val_tRNA-synt_C: Valy 33.1 1.5E+02 0.0033 25.5 6.3 64 626-692 2-65 (66)
318 PF15188 CCDC-167: Coiled-coil 33.1 2.4E+02 0.0052 26.0 7.8 41 662-708 31-71 (85)
319 KOG0976 Rho/Rac1-interacting s 32.7 6.5E+02 0.014 32.1 13.3 61 579-639 45-110 (1265)
320 PF08232 Striatin: Striatin fa 32.7 1.3E+02 0.0028 29.8 6.6 52 587-649 23-74 (134)
321 PF03148 Tektin: Tektin family 32.7 4.1E+02 0.0089 30.8 11.7 95 611-705 47-155 (384)
322 COG3937 Uncharacterized conser 32.6 1.2E+02 0.0027 29.0 6.0 22 675-696 85-106 (108)
323 COG1842 PspA Phage shock prote 32.3 6.8E+02 0.015 27.1 13.7 34 665-698 84-117 (225)
324 TIGR03007 pepcterm_ChnLen poly 32.2 4.1E+02 0.0089 31.5 12.0 86 604-699 140-230 (498)
325 TIGR00606 rad50 rad50. This fa 32.2 7.3E+02 0.016 33.6 15.4 31 664-694 968-998 (1311)
326 PRK15178 Vi polysaccharide exp 32.0 7E+02 0.015 29.7 13.4 100 581-697 222-338 (434)
327 PRK12787 fliX flagellar assemb 31.8 1.9E+02 0.004 29.0 7.4 26 662-687 111-137 (138)
328 cd00890 Prefoldin Prefoldin is 31.7 3.8E+02 0.0083 25.3 9.7 39 613-651 5-43 (129)
329 KOG0837 Transcriptional activa 31.7 2.9E+02 0.0063 30.5 9.4 57 614-701 213-269 (279)
330 PF11932 DUF3450: Protein of u 31.7 2E+02 0.0044 31.1 8.6 65 584-652 44-108 (251)
331 PF08172 CASP_C: CASP C termin 31.5 2.5E+02 0.0055 30.7 9.2 27 675-701 95-121 (248)
332 KOG2072 Translation initiation 31.4 6.5E+02 0.014 32.2 13.3 60 623-701 672-731 (988)
333 KOG4657 Uncharacterized conser 31.4 3.5E+02 0.0076 29.3 9.7 34 668-701 95-128 (246)
334 KOG3433 Protein involved in me 31.2 6.3E+02 0.014 26.7 11.2 64 583-649 75-141 (203)
335 KOG0933 Structural maintenance 31.0 5.7E+02 0.012 33.4 12.9 31 669-699 846-876 (1174)
336 PF09730 BicD: Microtubule-ass 30.7 5E+02 0.011 32.8 12.5 26 669-694 93-118 (717)
337 PRK12705 hypothetical protein; 30.6 5E+02 0.011 31.5 12.1 24 617-640 59-82 (508)
338 PF07246 Phlebovirus_NSM: Phle 30.6 5.3E+02 0.012 28.6 11.3 84 596-705 155-241 (264)
339 PF06698 DUF1192: Protein of u 30.5 1.4E+02 0.0031 25.7 5.5 33 618-650 25-57 (59)
340 PF13514 AAA_27: AAA domain 30.5 7.4E+02 0.016 32.9 14.8 131 571-702 231-382 (1111)
341 PRK14127 cell division protein 30.2 82 0.0018 30.3 4.5 28 670-697 41-68 (109)
342 PF04111 APG6: Autophagy prote 30.2 1.8E+02 0.0038 32.9 8.0 18 670-687 75-92 (314)
343 TIGR01069 mutS2 MutS2 family p 29.9 6.2E+02 0.013 32.3 13.4 18 108-125 38-55 (771)
344 PF08687 ASD2: Apx/Shroom doma 29.9 5.6E+02 0.012 28.5 11.4 109 583-694 94-262 (264)
345 KOG2070 Guanine nucleotide exc 29.7 73 0.0016 37.8 4.8 58 598-655 597-657 (661)
346 PF07321 YscO: Type III secret 29.6 6.2E+02 0.013 25.8 13.8 96 583-701 7-102 (152)
347 KOG4140 Nuclear protein Ataxin 29.1 2.9E+02 0.0063 33.0 9.4 45 599-652 274-319 (659)
348 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.9 4.3E+02 0.0094 25.8 9.6 67 583-649 60-126 (132)
349 PF12709 Kinetocho_Slk19: Cent 28.7 1.3E+02 0.0028 27.8 5.3 34 610-643 45-78 (87)
350 PF05700 BCAS2: Breast carcino 28.5 7.5E+02 0.016 26.4 16.0 36 665-700 181-216 (221)
351 PF14197 Cep57_CLD_2: Centroso 28.4 3.9E+02 0.0084 23.6 8.1 63 625-700 2-67 (69)
352 KOG4643 Uncharacterized coiled 28.3 1.3E+03 0.028 30.4 15.2 125 577-701 59-205 (1195)
353 TIGR02473 flagell_FliJ flagell 28.0 5.4E+02 0.012 24.6 10.2 39 664-702 66-104 (141)
354 COG4717 Uncharacterized conser 27.9 6.2E+02 0.013 32.6 12.4 119 584-707 184-308 (984)
355 PRK11239 hypothetical protein; 27.9 88 0.0019 33.4 4.7 28 669-696 186-213 (215)
356 PF09727 CortBP2: Cortactin-bi 27.6 2.4E+02 0.0053 29.8 7.8 47 626-692 139-185 (192)
357 PF03962 Mnd1: Mnd1 family; I 27.5 1.8E+02 0.0039 30.5 6.9 18 621-638 110-127 (188)
358 TIGR03752 conj_TIGR03752 integ 27.3 3.7E+02 0.008 32.2 10.0 23 592-614 69-91 (472)
359 PRK10929 putative mechanosensi 27.3 3.1E+02 0.0068 36.3 10.4 23 665-687 172-194 (1109)
360 KOG0250 DNA repair protein RAD 27.2 6.1E+02 0.013 33.4 12.4 61 582-642 661-724 (1074)
361 PRK10361 DNA recombination pro 27.1 1.2E+03 0.025 28.2 14.9 24 835-858 275-299 (475)
362 COG0419 SbcC ATPase involved i 27.0 4.8E+02 0.01 33.8 12.0 54 665-720 409-470 (908)
363 PF04714 BCL_N: BCL7, N-termin 26.7 27 0.00059 28.9 0.6 21 34-54 27-47 (52)
364 TIGR02680 conserved hypothetic 26.3 9.5E+02 0.021 32.7 14.9 14 838-851 1100-1113(1353)
365 KOG3156 Uncharacterized membra 26.2 1.2E+02 0.0026 32.4 5.3 59 579-638 124-191 (220)
366 PF05565 Sipho_Gp157: Siphovir 26.2 3.9E+02 0.0084 27.2 9.0 66 578-643 22-90 (162)
367 TIGR01000 bacteriocin_acc bact 26.1 8.9E+02 0.019 28.5 13.3 25 672-696 290-314 (457)
368 KOG1899 LAR transmembrane tyro 26.1 5.6E+02 0.012 31.7 11.2 16 583-598 112-127 (861)
369 PF06705 SF-assemblin: SF-asse 26.0 8.5E+02 0.018 26.2 13.9 82 608-702 108-190 (247)
370 PRK00106 hypothetical protein; 26.0 1.2E+03 0.025 28.7 14.2 34 674-707 133-166 (535)
371 KOG2685 Cystoskeletal protein 25.9 1.1E+03 0.025 27.7 14.0 112 582-701 253-379 (421)
372 TIGR03755 conj_TIGR03755 integ 25.9 1.3E+02 0.0027 35.4 5.9 61 629-689 308-373 (418)
373 PRK11546 zraP zinc resistance 25.8 2E+02 0.0044 28.9 6.6 57 588-649 60-118 (143)
374 TIGR03017 EpsF chain length de 25.8 1.1E+03 0.024 27.4 16.1 37 666-702 254-304 (444)
375 PF13514 AAA_27: AAA domain 25.7 9.1E+02 0.02 32.1 14.4 39 660-698 236-274 (1111)
376 PF12761 End3: Actin cytoskele 25.6 2.6E+02 0.0057 29.6 7.6 27 674-700 161-187 (195)
377 PF04931 DNA_pol_phi: DNA poly 25.6 1.7E+02 0.0037 37.1 7.6 8 580-587 730-737 (784)
378 KOG4348 Adaptor protein CMS/SE 25.5 1.4E+02 0.003 35.0 6.0 22 628-649 594-615 (627)
379 PF07957 DUF3294: Protein of u 25.4 1.6E+02 0.0034 31.6 6.1 34 625-658 74-109 (216)
380 KOG4403 Cell surface glycoprot 25.3 1.1E+03 0.024 28.0 12.9 110 580-701 250-368 (575)
381 KOG3863 bZIP transcription fac 25.1 2.3E+02 0.005 34.8 8.0 58 616-704 506-563 (604)
382 COG3750 Uncharacterized protei 24.8 1.6E+02 0.0034 26.8 4.9 40 583-622 22-68 (85)
383 PF05278 PEARLI-4: Arabidopsis 24.7 4.9E+02 0.011 29.0 9.8 32 670-701 211-242 (269)
384 PF11180 DUF2968: Protein of u 24.5 8.4E+02 0.018 25.9 11.0 74 579-652 102-185 (192)
385 cd00632 Prefoldin_beta Prefold 24.4 5.6E+02 0.012 23.9 9.1 33 669-701 66-98 (105)
386 PF08647 BRE1: BRE1 E3 ubiquit 24.4 5.7E+02 0.012 23.7 9.0 68 582-649 3-80 (96)
387 KOG0689 Guanine nucleotide exc 24.3 60 0.0013 38.4 3.0 40 86-125 321-361 (448)
388 PF04880 NUDE_C: NUDE protein, 24.2 79 0.0017 32.6 3.5 38 592-637 3-40 (166)
389 KOG4673 Transcription factor T 23.8 4.6E+02 0.0099 32.8 10.0 88 593-683 541-654 (961)
390 PF07439 DUF1515: Protein of u 23.7 5E+02 0.011 25.1 8.3 63 619-694 6-68 (112)
391 PF14817 HAUS5: HAUS augmin-li 23.7 1.9E+02 0.004 36.0 7.1 41 599-639 52-97 (632)
392 KOG1170 Diacylglycerol kinase 23.6 5 0.00011 49.4 -5.9 91 19-125 2-95 (1099)
393 PRK03918 chromosome segregatio 23.6 1.4E+03 0.03 29.1 15.3 9 313-321 16-24 (880)
394 PF10073 DUF2312: Uncharacteri 23.6 2.5E+02 0.0054 25.3 6.0 36 583-618 12-54 (74)
395 PF11285 DUF3086: Protein of u 23.5 1E+02 0.0022 33.8 4.3 19 617-635 7-25 (283)
396 PRK11020 hypothetical protein; 23.4 2.9E+02 0.0064 26.8 6.8 62 625-701 2-63 (118)
397 PF10234 Cluap1: Clusterin-ass 23.3 3.1E+02 0.0067 30.5 8.0 84 624-708 127-217 (267)
398 PF10359 Fmp27_WPPW: RNA pol I 23.2 3.4E+02 0.0073 32.5 9.1 62 619-702 168-229 (475)
399 PRK13729 conjugal transfer pil 23.2 1.8E+02 0.004 34.7 6.6 19 620-638 75-93 (475)
400 TIGR01005 eps_transp_fam exopo 23.2 9.7E+02 0.021 30.1 13.6 62 581-646 287-352 (754)
401 PF10768 FliX: Class II flagel 22.8 2.9E+02 0.0063 27.8 7.0 26 662-687 113-139 (139)
402 PRK13848 conjugal transfer pro 22.8 2.4E+02 0.0053 26.4 5.9 29 624-652 6-40 (98)
403 PRK11239 hypothetical protein; 22.6 1.1E+02 0.0025 32.6 4.3 29 673-701 183-211 (215)
404 PRK11281 hypothetical protein; 22.6 9.5E+02 0.021 32.1 13.4 26 664-689 190-215 (1113)
405 COG0172 SerS Seryl-tRNA synthe 22.5 4.9E+02 0.011 30.9 9.9 89 607-701 13-103 (429)
406 PF08458 PH_2: Plant pleckstri 22.3 7.2E+02 0.016 24.1 9.8 38 86-126 68-105 (110)
407 KOG1760 Molecular chaperone Pr 22.0 5.3E+02 0.012 25.5 8.3 79 618-699 27-121 (131)
408 PRK11820 hypothetical protein; 22.0 6.1E+02 0.013 28.4 10.2 97 588-698 133-235 (288)
409 PF11559 ADIP: Afadin- and alp 21.9 7.8E+02 0.017 24.3 12.0 32 670-701 84-115 (151)
410 PF07989 Microtub_assoc: Micro 21.7 5.9E+02 0.013 22.8 8.2 71 579-652 4-74 (75)
411 PF10224 DUF2205: Predicted co 21.7 5.2E+02 0.011 23.6 7.8 49 620-699 15-63 (80)
412 PF02841 GBP_C: Guanylate-bind 21.6 8.5E+02 0.018 27.0 11.3 34 581-614 151-184 (297)
413 KOG4095 Uncharacterized conser 21.6 33 0.00073 34.4 0.2 23 34-56 28-50 (165)
414 PF15030 DUF4527: Protein of u 21.5 2.1E+02 0.0046 31.2 6.1 82 616-701 11-92 (277)
415 KOG1832 HIV-1 Vpr-binding prot 21.2 97 0.0021 39.4 4.0 9 199-207 1271-1279(1516)
416 KOG2070 Guanine nucleotide exc 21.0 1.5E+02 0.0032 35.5 5.2 97 17-122 308-404 (661)
417 PF01920 Prefoldin_2: Prefoldi 21.0 6.3E+02 0.014 22.9 8.8 82 618-702 9-98 (106)
418 PF13870 DUF4201: Domain of un 20.8 9E+02 0.019 24.6 13.3 71 626-697 103-176 (177)
419 PTZ00186 heat shock 70 kDa pre 20.4 5.3E+02 0.012 32.2 10.3 36 679-714 606-642 (657)
420 PF10828 DUF2570: Protein of u 20.4 4.7E+02 0.01 24.9 7.7 33 584-616 27-59 (110)
421 PF08614 ATG16: Autophagy prot 20.4 4.6E+02 0.01 27.3 8.4 36 584-619 69-104 (194)
422 PF10481 CENP-F_N: Cenp-F N-te 20.4 4.2E+02 0.0091 29.5 8.1 86 611-697 26-112 (307)
423 PF12718 Tropomyosin_1: Tropom 20.3 8.7E+02 0.019 24.3 13.8 67 618-698 39-105 (143)
424 PF09731 Mitofilin: Mitochondr 20.0 1.6E+03 0.034 27.3 14.1 106 578-705 273-378 (582)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-55 Score=505.90 Aligned_cols=826 Identities=28% Similarity=0.274 Sum_probs=621.9
Q ss_pred CCCCCCCCCCCCceEEEEeeEeeecC----CCCCCcEE--------EEEEEeCC--------eeeEecCCCCCC------
Q 002819 6 APFERPRPGASNTVFKSGPLFISSKG----IGWKSWKK--------RWFILTRT--------SLVFFKNDPSAL------ 59 (876)
Q Consensus 6 ~~~~~~~~~~~~~VvKeG~L~l~KkG----~~~k~WKK--------RWFVL~~~--------~L~YYKd~~~~~------ 59 (876)
+..+++.-.+++.+.|.+-..+.-.+ ...+.|++ ||++..+. ..+++...+...
T Consensus 160 v~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~ 239 (1100)
T KOG4271|consen 160 VVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNERKRIEMRRAFKENLEESPFITPGKPWEEARSFIM 239 (1100)
T ss_pred eeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcCCccCCCCCHHHhhchhh
Confidence 33567777788888888855544443 12566777 99998743 444444443111
Q ss_pred ----CCCCcceeeeeCc----EEeCCCcceeeccCCceEEEEecC-CCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCch
Q 002819 60 ----PQRGGEVNLTLGG----IDLNNSGSVVVREDKKLLTVLFPD-GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (876)
Q Consensus 60 ----p~~~~ev~i~Lg~----I~L~~~~sv~~~~~Kk~~fvIt~~-~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~ 130 (876)
.+.+++..+..+. ..|...+.+...+-++-.++++.+ +.+++.|...+++..++.+|-.++..++..+|.+
T Consensus 240 n~d~~qklte~v~t~vy~r~qk~i~ekak~~~qE~l~e~s~Lf~d~~~~a~~fsdKmeti~d~le~e~rye~~~~~Aper 319 (1100)
T KOG4271|consen 240 NEDFYQKLTESVYTDVYGRHQKQIIEKAKEEFQELLLEYSELFYDLELDAKPFSDKMETIQDVLEEEARYEAALKQAPER 319 (1100)
T ss_pred hhhHHHhcccceeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccchhHHHHHHHHhHHHHHHHHHhCcch
Confidence 1112222222222 222211111111112223333332 4567889999999999999999999999999999
Q ss_pred -hhhcCccccccCCCCccccCc-cccccCCCCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccC---ccccC
Q 002819 131 -ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEG---ILRQA 205 (876)
Q Consensus 131 -a~~~g~~~if~~~~~~~~~~s-~~~~k~k~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEG---IFRis 205 (876)
+.++||+|+|+.+..+...++ +..++...++.+.+||+|..-.++..++-|.|..+.+.+|..+|+..|| |-|++
T Consensus 320 dalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~le~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qs 399 (1100)
T KOG4271|consen 320 DALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGALENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQS 399 (1100)
T ss_pred hhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhhhhhcCCcccchhhhhhhhhcccchhhhHHHHHhc
Confidence 999999999999998876554 6778888899999999999999999999999999999999999999999 99999
Q ss_pred C-CHHHHHHHHHHhh-cCCccC--CCCCCcc--chhhhhH--hhhccCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHH
Q 002819 206 A-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLRELPSSPVPASCCTALLEA--YKIDRKEARISAMR 275 (876)
Q Consensus 206 G-s~~~I~~L~~~ld-~G~~~~--~~~~D~h--~VAslLK--~fLReLPePLLp~~ly~~~l~~--~~~~~~eeri~~lk 275 (876)
+ ++..|+.-+..|+ .|...+ ...++|| .|...++ .-||.++..+.|..+|..+..+ +...-.+.|+..++
T Consensus 400 a~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~ 479 (1100)
T KOG4271|consen 400 ADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVL 479 (1100)
T ss_pred ccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhcccccCCccccccccccccccccccHHHHHHHH
Confidence 9 8888888777786 565433 3345899 5888888 8999999999999999888777 66666688999999
Q ss_pred HHHHhh--CChhHHH----HHHHHHHHHHHHHhccccCCCCcc-hhhHhhcc-cccC-CCCCCCCCcccc-cCCCCCchH
Q 002819 276 SAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AVAACMAP-LLLR-PLLAGECELEDD-FDMNGDNSA 345 (876)
Q Consensus 276 ~lLl~~--LP~~N~~----lL~~Ll~~L~~Va~~s~~NKMta~-NLAi~FaP-~Llr-p~~~~~~~led~-~~~~g~~s~ 345 (876)
..+++. .|.+|+. ++.+|+.+|..+..++..|.|++. ..+.|++| .|++ |-..+.|.++.. |+..|+..+
T Consensus 480 ~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aCkS~~llL~~pI~~~krrie~~~f~v~~de~v 559 (1100)
T KOG4271|consen 480 KAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAACKSPHLLLRLPIGAGKRRIELSSFDVRKDELV 559 (1100)
T ss_pred HHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHhcChHHHHhcccccccceecccccccccchhH
Confidence 999988 8998887 888899999999999999999999 99999999 5777 666788888876 899999999
Q ss_pred H----HHHHHHHHH-HHHHHHHHHHhhcccccCCcccccccCCCCCCCCCCC--CCCCCccccccccCCCCCCCCCCCCC
Q 002819 346 Q----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSG--SEDSSDEENLDMKNNGYHDAQNEVDP 418 (876)
Q Consensus 346 q----~~~a~~~~~-~~~~iVe~LIeny~~IF~~~~l~~~s~~~~ss~~~~~--sedssd~~~~~~~d~syds~e~e~~~ 418 (876)
+ ++.|...++ .++.+|-.+++.|..||.+..+.++..+..+.+.+.. +.++.+.+.+-....+-.+..++++-
T Consensus 560 h~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~ 639 (1100)
T KOG4271|consen 560 HGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGSEIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEG 639 (1100)
T ss_pred HHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhcccccccccccccCCCchhccccccccccccchhhcccc
Confidence 8 888888887 5999999999999999999998777666655444222 23344333333333322333333333
Q ss_pred CCCCCcccccCCCCcccCCCCCCCccccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCChhhhhhhccccCCCC
Q 002819 419 ESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNEN 498 (876)
Q Consensus 419 ~~d~~~~~~~s~~~Se~s~~~~sd~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (876)
..+.|..........|......+|++.|.++...|++.+++...+.+.+.++++..|...|.+.. .
T Consensus 640 s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp~~e~t~lsst~k~~S~~~~------d-------- 705 (1100)
T KOG4271|consen 640 SHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSPFREDTSLSSTSKDHSKLSM------D-------- 705 (1100)
T ss_pred ccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCCccCcccccCCccccccccc------c--------
Confidence 33333333344566667777888999999999999999999999988899999877654443332 1
Q ss_pred ccccccccccCCCCCcccccccccccCCCCCCCC-CCCCCCccCCC-CCCCCCCCCCCCcccccccCcccCCCCcccCCC
Q 002819 499 SITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP-VGKGTSSNFSAKRSAFWGRSNARKTSSVESIDS 576 (876)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (876)
.+...-++....+.+++...|+....|+.|.+ +++.+..+.|+ ++.+.++...++|...|||+.+.|++.+|++|.
T Consensus 706 --~g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~ 783 (1100)
T KOG4271|consen 706 --LGGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKPDLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYA 783 (1100)
T ss_pred --ccCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccCcccccccccccCccccccCCCCCcccCCchhccc
Confidence 11112244455666777777777776766665 44555667777 334555667788889999999999999999999
Q ss_pred ChhHHHHHhH-----hhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 002819 577 SGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE-QDVSRLQEQLQAERDLRAALEVG 650 (876)
Q Consensus 577 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~Le-qeV~~Lq~qL~~E~~l~~~Le~a 650 (876)
+++|++.|+| ++.+|.|+|+||+||+|+|+.+||++|+|+++++++|.+|| +++.+||.++|.|+..|.+...+
T Consensus 784 s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nks~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~ 863 (1100)
T KOG4271|consen 784 SPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNKSDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKG 863 (1100)
T ss_pred CcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhcccccccccccccHhhhhhhhhccccchhHHHHHHhc
Confidence 9999999999 99999999999999999999999999999999999999999 99999999999999999999987
Q ss_pred --hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhcCCccchhhhhhcccccchhhhh
Q 002819 651 --LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN--QQRQHHYGSLSDACDRYQNVQNHNSQQRF 726 (876)
Q Consensus 651 --l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 726 (876)
+....|.. ...-.|.++++-|++++..|.+ ++|.+++.+...+.+ .+++....+.+++.......|.|..|-+.
T Consensus 864 ~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD-a~lktk~~n~pa~~stt~~s~~~~~~l~~~~t~~k~ip~~~ekc~s 941 (1100)
T KOG4271|consen 864 GLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD-AKLKTKTKNTPARRSTTWESNYFLTPLQDAVTSEKPIPIFLEKCKS 941 (1100)
T ss_pred cCcccccccc-ccccCcccchHHHhhhcccccc-ccccccccCCcccccchhhhhccCCcccccccCCcccchHHHHHHH
Confidence 55554433 3466899999999999999999 999999999999999 99999999999999999999999999999
Q ss_pred cccccchhhhhhhhhhhhhhhhhcccccchhhccccccCCCCCCCCccccccccccCCCccccccccccccccccCCCCC
Q 002819 727 LQQDFDSTLAFVNHERKQRTEENLLGADWRNIKGQGLATGSSNRLPRKQFVESTSLSDSKSTEASTNVSMDELCGVDSAS 806 (876)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (876)
.++++..+.++..|.+-.+|+......+|++-.. ..+++++..-.--.-+. +.--+....|++.++.
T Consensus 942 fiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~---~dl~s~d~~v~~vagAl-----ksffa~Lpeplipys~----- 1008 (1100)
T KOG4271|consen 942 FIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHN---FDLSSMDTTVNVVAGAL-----KSFFACLPEPLIPYSY----- 1008 (1100)
T ss_pred HHHhccchhhhheecCCCCccHHHHHHHHHhhcc---ccccccccccccccCcc-----hhhhhhCCCcccCccC-----
Confidence 9999999999999999999998888999977322 11234442211000000 0000111222222221
Q ss_pred CCCCCCCccccccCC--CC-CCchhhHHHHhhhhhhHHHHHHHHH------------------------------HHhhh
Q 002819 807 VPSTSRPIEATDYAR--HP-STASSALVELTTRLDFFKERRSQLM------------------------------EQLHN 853 (876)
Q Consensus 807 ~~~~~~~~~~~~~~~--~~-~~~~s~l~~lt~rl~f~kerrsq~~------------------------------~~~~~ 853 (876)
++--.-+.-..|+|| |+ ..++.+|..+| ++|||++++||+ .|+|+
T Consensus 1009 h~~~~e~~kI~D~~rklhglr~~~a~l~~~n--~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~~~~~~~~i~Q~q~ 1086 (1100)
T KOG4271|consen 1009 HPRLKEAMKISDRGRKLHGLREASAKLHPSN--QDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPTLLMYEEFIQQCQF 1086 (1100)
T ss_pred CcchhhhhhcccchhhccchhhHhhhcCchH--HHHHHHHHHHHhhhcccccccccccccccccccchHHHHHHHHHhhh
Confidence 011111334778888 55 45566688888 999999999999 99999
Q ss_pred cCCCCCCCCCC
Q 002819 854 LDLNYGTTSSQ 864 (876)
Q Consensus 854 ~d~~~~~~~~~ 864 (876)
+|++|+++...
T Consensus 1087 fd~N~~s~~~~ 1097 (1100)
T KOG4271|consen 1087 FDKNRCSSEMK 1097 (1100)
T ss_pred hhccccccccc
Confidence 99999976544
No 2
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.8e-40 Score=336.54 Aligned_cols=192 Identities=23% Similarity=0.432 Sum_probs=175.5
Q ss_pred ccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhhHhhhcc
Q 002819 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (876)
Q Consensus 165 VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslLK~fLRe 244 (876)
+||+||..+|. +..||.+|.+|+.||+++|+.+|||||++|+...+++++..+|.|.......+|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999999 67899999999999999999999999999999999999999999986656789999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccC
Q 002819 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (876)
Q Consensus 245 LPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llr 324 (876)
||+||+|.+.|+.|+.++...+.+.++..++. ++.+||+.|+.+|.||+.||++|+.+++.|+||+.|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQR-LLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 99999999999999999988888999999998 56799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
++..+ .........+..+|++||+||+.||+++.
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 87321 01133345678999999999999999863
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.5e-39 Score=334.46 Aligned_cols=189 Identities=20% Similarity=0.369 Sum_probs=167.9
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcC-C-ccCC--CCCCccchhhhhHh
Q 002819 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (876)
Q Consensus 166 FGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G-~-~~~~--~~~D~h~VAslLK~ 240 (876)
||+||..++++. ..||.+|.+|++||+.+|+.+|||||++|+..+|+++++.||++ . ..+. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999875 46999999999999999999999999999999999999999974 3 2222 23589999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcc
Q 002819 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (876)
Q Consensus 241 fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (876)
|||+||+||||.++|+.|+.+.+..+..+++..++. ++.+||++|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHE-ALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 999999999999999999999998888899999998 5579999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 321 ~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
+|+|++..+ ....+......+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~-----------------~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS-----------------ALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc-----------------HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999987311 11223344567899999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-39 Score=335.98 Aligned_cols=197 Identities=23% Similarity=0.358 Sum_probs=174.6
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccC---CCCCCccchhhhh
Q 002819 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (876)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~---~~~~D~h~VAslL 238 (876)
+++||+||..++.+ +..||.+|.+|+.||+++|+.+|||||++|+...++.+++.+|.|.... ....|||+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 46999999999976 4579999999999999999999999999999999999999999997432 3356999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||.++|+.|+.+.+..+.++++..++. ++.+||+.|+.+|+||+.||++|++|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWR-ILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 99999999999999999999999988888899999998 56799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (876)
||+|+|++..+. . .+.+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~--------------~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS--------------L-AEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh--------------h-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999874211 0 11122334568899999999999999986
No 5
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=6.5e-39 Score=330.90 Aligned_cols=191 Identities=23% Similarity=0.422 Sum_probs=168.4
Q ss_pred cccccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCCCCccchhhh
Q 002819 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (876)
Q Consensus 164 ~VFGvpL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~~D~h~VAsl 237 (876)
.|||+||++++... ..||.+|.+|+.||+++|+.+|||||++|+...++++++.+|.|.. .+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999988642 3499999999999999999999999999999999999999999974 34457899999999
Q ss_pred hHhhhccCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhh
Q 002819 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (876)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~l~~~~~--~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (876)
||.|||+||+||+|.++|+.|+.+... .+.+.++..++. ++.+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~-~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMK-QVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 345677888888 56799999999999999999999999999999999999
Q ss_pred HhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 316 i~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
+||||+|||+.. ++ ..+.+..+..++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~------~~-----------~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKV------ED-----------PATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCC------CC-----------HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 999999999873 22 12334556677899999999999998
No 6
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.7e-39 Score=333.71 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=175.8
Q ss_pred ccccchHHHhhhc------CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC---ccCCCCCCccchh
Q 002819 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (876)
Q Consensus 165 VFGvpL~~ll~~~------~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~---~~~~~~~D~h~VA 235 (876)
|||+||..++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+|+.++..++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999763 369999999999999999999999999999999999999999863 2234568999999
Q ss_pred hhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhh
Q 002819 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (876)
Q Consensus 236 slLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (876)
++||.|||+||+||||.++|+.|+.+....+.++++.+++. ++.+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNL-LVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 99999999999999999999999999888888889999998 55799999999999999999999999999999999999
Q ss_pred HhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 316 i~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
+||||+||++...+.. ........+..+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSK-----------DNESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCC-----------cchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 9999999998732211 1123345566677788999999999999999765
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=1.9e-38 Score=324.43 Aligned_cols=185 Identities=25% Similarity=0.352 Sum_probs=167.1
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhhHhhhcc
Q 002819 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (876)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLRe 244 (876)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++.+++.|+.|. .....++|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999999999999999999999999999999999999999885 3334678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccC
Q 002819 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (876)
Q Consensus 245 LPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llr 324 (876)
||+||||+++|+.|+.+....+..+++..++. ++.+||++|+.+|++|+.||++|+.+++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYR-VLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 99999999999999999988888889999998 56899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
++... + .+..+....+...+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 86321 1 123456677888999999973
No 8
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-38 Score=332.96 Aligned_cols=209 Identities=21% Similarity=0.344 Sum_probs=174.4
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhhHh
Q 002819 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (876)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslLK~ 240 (876)
+.|||+||..++++ +..||.+|.+|+.||+.+|+.+|||||++|+..+|+.|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988876 4579999999999999999999999999999999999999999864 444567899999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcc
Q 002819 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (876)
Q Consensus 241 fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (876)
|||+||+||||+++|+.|+.+.+..+.++++.+++. ++.+||++|+.+|++|+.||++|+.|++.|||++.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~-~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQC-AILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 999999999999999999999888888899999998 4569999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccc-----ccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Q 002819 321 LLLRPLLAGECELED-----DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (876)
Q Consensus 321 ~Llrp~~~~~~~led-----~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (876)
+||+........+-. .....|... ...+.....+..+|.+||+||+.||.-.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp 217 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVP 217 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999986432111000 000011111 1123444456788999999999999754
No 9
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-37 Score=341.86 Aligned_cols=306 Identities=23% Similarity=0.340 Sum_probs=244.3
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCC--CCCcceeeeeCcEEeCCCcceeeccCCceEE
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p--~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~f 91 (876)
..+...+++||||++.|....+.|.|+||+....+-.+-...-+.++ +.|...++.+..|.-....+ .+|+|||
T Consensus 260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCF 335 (812)
T KOG1451|consen 260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCF 335 (812)
T ss_pred cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceee
Confidence 34556699999999999988899999999998865555444433332 23445556666666555444 5899999
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCchhhhcCccccccCCCCccccCccccccCCCCCCCcccccchH
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPIL 171 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~a~~~g~~~if~~~~~~~~~~s~~~~k~k~~~k~~VFGvpL~ 171 (876)
.|....+. .+.++||-+++++..||.|+..+ .+++.+...-...+ -..|.
T Consensus 336 Dve~~erp-gviTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~----------------~~qLd 385 (812)
T KOG1451|consen 336 DVEVEERP-GVITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYK----------------QTQLD 385 (812)
T ss_pred eeeecccC-CeeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhh----------------hhhhh
Confidence 99875544 48999999999999999998644 23333221100000 00121
Q ss_pred HHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHh-hc---CCcc--CCCCCCccchhhhhHhhhccC
Q 002819 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEY-EQ---GKTE--FSADEDAHVIGDCVKHVLREL 245 (876)
Q Consensus 172 ~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~l-d~---G~~~--~~~~~D~h~VAslLK~fLReL 245 (876)
++ -=.||.+||.+|+..|++++|+||..|...+|++|...+ +. ++.+ ...+||+.+|++.||.|||.|
T Consensus 386 ~i------GF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnL 459 (812)
T KOG1451|consen 386 DI------GFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNL 459 (812)
T ss_pred hh------hHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhC
Confidence 11 135899999999999999999999999999999998764 32 1222 225789999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCC
Q 002819 246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (876)
Q Consensus 246 PePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp 325 (876)
|+||+++.+...|+.+++.++.+.|+.+|+. ++.+||+-||.+|..||+||..|+.|+..|.||..||++||||+|+|+
T Consensus 460 pEPLMTY~LHk~FI~AAKsdnq~yRv~aIHs-LVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRp 538 (812)
T KOG1451|consen 460 PEPLMTYELHKVFINAAKSDNQTYRVDAIHS-LVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRP 538 (812)
T ss_pred CchhhHHHHHHHHHHHHhccchhhhHHHHHH-HHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCc
Confidence 9999999999999999999999999999998 567999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccc
Q 002819 326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLH 378 (876)
Q Consensus 326 ~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~l~ 378 (876)
. ...++|+|.++.++-||++||+||++||...+..
T Consensus 539 Q------------------EETVAAiMdIKFQNIVVEILIEnyeKIF~t~Pd~ 573 (812)
T KOG1451|consen 539 Q------------------EETVAAIMDIKFQNIVVEILIENYEKIFKTKPDS 573 (812)
T ss_pred h------------------HHHHHHHHcchhhhhhHHHHHhhhHHHhcCCCCc
Confidence 7 2368899999999999999999999999977643
No 10
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=1.2e-38 Score=324.76 Aligned_cols=176 Identities=22% Similarity=0.365 Sum_probs=165.1
Q ss_pred cccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhhHh
Q 002819 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (876)
Q Consensus 166 FGvpL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslLK~ 240 (876)
||+||..++++. ..||.+|.+|+.||+++|+++|||||++|+..+++++++.|++|......++|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999998763 359999999999999999999999999999999999999999997666667899999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcc
Q 002819 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (876)
Q Consensus 241 fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (876)
|||+||+||||.++|+.|+++....+..+++..++. ++.+||++|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQR-LLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 999999999999999999999988888999999998 5679999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002819 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (876)
Q Consensus 321 ~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (876)
+|+++ ..++..||+||+.||++
T Consensus 160 ~l~~~--------------------------------~~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQIS--------------------------------NRLLYALLTHCQELFGN 181 (182)
T ss_pred cccCc--------------------------------HHHHHHHHHHHHHHcCC
Confidence 99864 36799999999999986
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-38 Score=325.60 Aligned_cols=190 Identities=22% Similarity=0.306 Sum_probs=165.9
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCC----CCCCccchhhhh
Q 002819 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (876)
Q Consensus 164 ~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~----~~~D~h~VAslL 238 (876)
+|||+||..++.+ +..||.+|..|++||+++|+ +|||||++|+..+++++++.+|.|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 46899999999999999999 69999999999999999999999964322 346999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||+++|+.|+.+....+.++++..++. ++.+||++|+.+|+||+.||++|+.+++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHD-VIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 99999999999999999999999998888999999998 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
||+|||++..... ..+-.++.+.....+.||+|||+|
T Consensus 159 ~P~L~~~~~~~~~------------~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------------CFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------------cchHHHHHHHHhhhhhheehhhcC
Confidence 9999998732110 011134455666778899999986
No 12
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-38 Score=329.57 Aligned_cols=192 Identities=18% Similarity=0.330 Sum_probs=168.3
Q ss_pred cccchHHHhhhcC------------CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc--CCCCCCc
Q 002819 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (876)
Q Consensus 166 FGvpL~~ll~~~~------------~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~--~~~~~D~ 231 (876)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998843 3999999999999999999999999999999999999999998532 3456899
Q ss_pred cchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----c
Q 002819 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (876)
Q Consensus 232 h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----~ 306 (876)
|+||++||.|||+||+||||.++|+.|+.+.+..+.++++..++. ++.+||+.|+.+|++|+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHL-VYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999999999988888888888887 5679999999999999999999998775 4
Q ss_pred CCCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 307 NKMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
||||+.|||+||||+|||++.... ..+......+.+|++||+||+.||....
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~------------------~~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNP------------------NTGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCc------------------chHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 999999999999999999874211 0112233466899999999999998754
No 13
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8e-38 Score=322.18 Aligned_cols=190 Identities=20% Similarity=0.366 Sum_probs=168.7
Q ss_pred ccccchHHHhhhc--CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccC----CCCCCccchhhhh
Q 002819 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (876)
Q Consensus 165 VFGvpL~~ll~~~--~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~----~~~~D~h~VAslL 238 (876)
+||+||+..+... ..||.+|.+|+.+|+++|+++|||||++|+..+++++++.+|+|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999887653 569999999999999999999999999999999999999999996432 2346999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||.++|+.|+.+.+..+..+++..++. ++++||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRR-LIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 99999999999999999999999988888999999998 56799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
||+|+|++..+ ...........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~-----------------~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN-----------------METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC-----------------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 11223344556799999999999998
No 14
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.6e-38 Score=322.38 Aligned_cols=190 Identities=26% Similarity=0.432 Sum_probs=168.3
Q ss_pred CCcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCC-CCccchhhh
Q 002819 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGDC 237 (876)
Q Consensus 162 k~~VFGvpL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~-~D~h~VAsl 237 (876)
++.+||+||+.++.+. ..||.+|.+|+.||+++|+++|||||++|+..+++.+++.+|.|....... .|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5679999999998764 579999999999999999999999999999999999999999996433333 499999999
Q ss_pred hHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHh
Q 002819 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (876)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (876)
||.|||+||+||||.++|+.|+.+.+.. ...++..++. ++.+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~-~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQ-LLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 5778899998 5579999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 318 FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
|||+|+|++.. . + .+.....++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~-~--~----------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDA-S--M----------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCc-c--c----------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999998732 1 0 12345567889999999999998
No 15
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=6e-38 Score=321.21 Aligned_cols=184 Identities=21% Similarity=0.401 Sum_probs=164.8
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccC---CCCCCccchhhhhH
Q 002819 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVK 239 (876)
Q Consensus 164 ~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~---~~~~D~h~VAslLK 239 (876)
++||++|+.++++ +..||.+|.+|++||+.+|+.+|||||++|+..+++.+++.|++|...+ ....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999976 4579999999999999999999999999999999999999999987432 34689999999999
Q ss_pred hhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhc
Q 002819 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (876)
Q Consensus 240 ~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~Fa 319 (876)
.|||+||+||||.++|+.|+.+....+..+++..++. ++.+||++|+.+|+||+.||++|++|++.||||+.|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIRE-ILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 9999999999999999999999999888899999998 557999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 320 P~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
|+|+|.+... . .+....+++.|++.||.|
T Consensus 160 P~L~~~p~~~-------------~------~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------D------QVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------c------HHHHHHHHHHHHHHHhcC
Confidence 9999976311 1 133356778899999875
No 16
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.2e-38 Score=319.52 Aligned_cols=183 Identities=27% Similarity=0.415 Sum_probs=162.9
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc-C--CCCCCccchhhhhHhh
Q 002819 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-F--SADEDAHVIGDCVKHV 241 (876)
Q Consensus 166 FGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~-~--~~~~D~h~VAslLK~f 241 (876)
||+||..++++. ..||.+|.+|+.||+.+|+++|||||++|+...+++++..+|.|... + ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 999999999874 56999999999999999999999999999999999999999998632 2 3457999999999999
Q ss_pred hccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhccc
Q 002819 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (876)
Q Consensus 242 LReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~ 321 (876)
||+||+||||+++|+.|+.+.+..+..+++..++. ++.+||++|+.+|+||+.||++|+.+++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKD-LIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 99999999999999999999999888999999998 55799999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 322 Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
|||++... . ..+.....++.+|++||+|
T Consensus 160 ll~~~~~~-------------~-----~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET-------------G-----NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc-------------h-----HHHHHhHHHHHHHHHHhhC
Confidence 99987311 0 1122334678999999985
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-37 Score=320.94 Aligned_cols=186 Identities=21% Similarity=0.351 Sum_probs=163.2
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCCCCccchhhhhHhhhc
Q 002819 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (876)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLR 243 (876)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999877 56799999999999999999999999999999999999999999863 33457899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCc
Q 002819 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (876)
Q Consensus 244 eLPePLLp~~ly~~~l~~~~~~------------~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta 311 (876)
+||+||||+++|+.|+.+.+.. ..++++..++. ++..||++|+.+|+||+.||++|+.+++.|||++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~-li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKE-LLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999886531 23578999998 5579999999999999999999999999999999
Q ss_pred chhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 312 ~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
.|||+||||+|||++.... ..++++......+.+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~---------------~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGD---------------VSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCc---------------hHHHHHhccchHHHHHHHHhhC
Confidence 9999999999999884321 1133445567778999999986
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.9e-37 Score=316.99 Aligned_cols=184 Identities=20% Similarity=0.330 Sum_probs=164.3
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhhHhhhcc
Q 002819 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (876)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLRe 244 (876)
||+||..++..++.||.+|.+|++||+.+|+.+|||||++|+..+|+.+++.||.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877889999999999999999999999999999999999999999875 3445678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccC
Q 002819 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (876)
Q Consensus 245 LPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llr 324 (876)
||+||||+++|+.|+.+....+..+++..++. ++.+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~-li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYS-VIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 99999999999999999988888889999998 56799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 002819 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366 (876)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIe 366 (876)
++... + + ++.++...+...+|++||-
T Consensus 160 ~p~~~-----d--------~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D--------P---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C--------H---HHHHHHHhhccchhhhhcc
Confidence 86321 1 1 2334555667788998873
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-37 Score=320.53 Aligned_cols=195 Identities=24% Similarity=0.332 Sum_probs=167.9
Q ss_pred ccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhhHh
Q 002819 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (876)
Q Consensus 165 VFGvpL~~ll~~----~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslLK~ 240 (876)
|||+||..++.. ...||.+|.+|+.||++ |+.+|||||++|+..+++.+++.+|.|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 46799999999999986 6999999999999999999999999987543 35789999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcc
Q 002819 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (876)
Q Consensus 241 fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (876)
|||+||+||||+++|+.|+.+....+.++++.+++. ++.+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLL-LTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 999999999999999999999988888888888886 5679999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 321 ~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
+||++..... .|.+ . .......++.+|++||+||+.||--+.
T Consensus 158 ~L~~~~~~~~-~~s~---------~----~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-KMSS---------S----TEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-ccch---------h----HHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999863211 0111 0 112234567999999999999997654
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-37 Score=319.83 Aligned_cols=187 Identities=23% Similarity=0.434 Sum_probs=163.7
Q ss_pred cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCCCCccchhhhhHhhhccCCCCCCChhhH
Q 002819 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (876)
Q Consensus 177 ~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLReLPePLLp~~ly 255 (876)
...||.+|.+|+.||+++|+++|||||++|+..+++.+++.||.|.. .+....|+|+||++||.|||+||+||||+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 45799999999999999999999999999999999999999999974 34556899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc-----------cCCCCcchhhHhhcccccC
Q 002819 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (876)
Q Consensus 256 ~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----------~NKMta~NLAi~FaP~Llr 324 (876)
+.|+.+.... .++++..++. ++.+||+.|+.+|+||+.||++|++|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQL-LIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999998765 6788999998 5579999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
++..+...+++ ..+.+.....++.||++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 88543322222 123344556678999999999999999764
No 21
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-37 Score=323.71 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=161.5
Q ss_pred ccccchHHHhhhc----------------CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC----cc
Q 002819 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (876)
Q Consensus 165 VFGvpL~~ll~~~----------------~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~----~~ 224 (876)
||||+|++.+... +.||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999998887652 258999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCccchhhhhHhhhccCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhhCChhHH
Q 002819 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (876)
Q Consensus 225 ~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~-----------------~~~eeri~~lk~lLl~~LP~~N~ 287 (876)
....+++|+||++||.|||+||+||||+++|+.|+.+... .+..+++..++. ++.+||++|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-li~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRD-LITRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHH-HHHHCCHHHH
Confidence 3356899999999999999999999999999999987643 346788999998 5679999999
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 288 ~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
.+|+||+.||++|++|++.|||++.|||+||||+||+++.. .|. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~---~~~----------------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDH---EMD----------------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcc---ccC----------------HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997621 111 11233457899999999
Q ss_pred ccccc
Q 002819 368 YENIF 372 (876)
Q Consensus 368 y~~IF 372 (876)
+++|.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99863
No 22
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=7.1e-37 Score=312.73 Aligned_cols=185 Identities=26% Similarity=0.386 Sum_probs=167.9
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhhHhhhcc
Q 002819 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (876)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLRe 244 (876)
||+||..++.++..||.+|.+|++||+.+|+++|||||++|+..+++.+++.+|.|. ......+|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 3345678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccC
Q 002819 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (876)
Q Consensus 245 LPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llr 324 (876)
||+||||+++|+.|+.+....+..+++..++. ++.+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|+|
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYS-VLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 99999999999999999998888899999998 56799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
++... + -+.++....+...+|++||+.
T Consensus 160 ~~~~~-----~-----------~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA-----D-----------PLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHHHHHHHHHHHHHhhC
Confidence 87221 1 123566677888999999974
No 23
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.7e-37 Score=315.11 Aligned_cols=185 Identities=24% Similarity=0.405 Sum_probs=165.8
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc--cCC----CCCCccchhhhh
Q 002819 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS----ADEDAHVIGDCV 238 (876)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~--~~~----~~~D~h~VAslL 238 (876)
||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.+|+|.. .+. ...|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999999876 45799999999999999999999999999999999999999999853 221 246999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||.++|+.|+.+.+..+..+++..++. ++.+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHG-LINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 99999999999999999999999998888889999998 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
||+|+|++.. . +......+.++++||+||+.||
T Consensus 160 ~P~l~~~~~~---~------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPD---N------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCcc---c------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 9999998731 0 1123445789999999999998
No 24
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.8e-37 Score=314.92 Aligned_cols=177 Identities=21% Similarity=0.374 Sum_probs=161.4
Q ss_pred ccccchHHHhhh------cCCCcHHHHHHHHHHHhcC-CcccCccccCCCHHHHHHHHHHhhcCCc-cC---CCCCCccc
Q 002819 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKT-EF---SADEDAHV 233 (876)
Q Consensus 165 VFGvpL~~ll~~------~~~VP~iL~~~i~~Le~~G-l~tEGIFRisGs~~~I~~L~~~ld~G~~-~~---~~~~D~h~ 233 (876)
|||+||..+++. +..||.+|.+|+.||+++| +.+|||||++|+...++.+++.++.|.. .+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999875 3469999999999999987 7999999999999999999999999852 22 23579999
Q ss_pred hhhhhHhhhccCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcc
Q 002819 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (876)
Q Consensus 234 VAslLK~fLReLPePLLp~~ly~~~l~~~~~~-~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~ 312 (876)
||++||.|||+||+||||.++|+.|+.+.+.. +..+++..++. ++.+||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKD-LVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988776 77889999998 56799999999999999999999999999999999
Q ss_pred hhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002819 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (876)
Q Consensus 313 NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (876)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999874 4689999999999986
No 25
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=7e-37 Score=316.88 Aligned_cols=187 Identities=21% Similarity=0.317 Sum_probs=162.8
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCCCCccchhhhhHhhhc
Q 002819 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (876)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLR 243 (876)
||+||..++.+ .+.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|.. ....++|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 57899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCC
Q 002819 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (876)
Q Consensus 244 eLPePLLp~~ly~~~l~~~~~~--------------~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKM 309 (876)
+||+||||+++|+.|+.+.... +...++..++. ++..||++|+.+|+||+.||++|++|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKD-LLRQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999987531 22457889998 56799999999999999999999999999999
Q ss_pred CcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 310 ta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
++.|||+||||+|||++.... .. .++++......+.||++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~-------------~~-~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA-------------DV-SLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc-------------ch-hHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999984211 01 133445667788999999986
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.2e-37 Score=311.71 Aligned_cols=161 Identities=28% Similarity=0.520 Sum_probs=151.5
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cC-CCCCCccchhhhhHhhhc
Q 002819 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EF-SADEDAHVIGDCVKHVLR 243 (876)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~-~~~~D~h~VAslLK~fLR 243 (876)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|.. .+ ..++|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 9999999999888999999999999999999999999999999999999999999853 33 245799999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhccccc
Q 002819 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (876)
Q Consensus 244 eLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Ll 323 (876)
+||+||||+++|+.|+++....+..+++..++. ++++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~-li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKE-LLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 999999999999999999998888899999998 5679999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 002819 324 RPLL 327 (876)
Q Consensus 324 rp~~ 327 (876)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-36 Score=316.68 Aligned_cols=187 Identities=22% Similarity=0.323 Sum_probs=159.0
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCCCCccchhhhhHhhhc
Q 002819 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (876)
Q Consensus 166 FGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLR 243 (876)
||+||..++.+. ++||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|.. ....++|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 999999998764 6899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHH
Q 002819 244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (876)
Q Consensus 244 eLPePLLp~~ly~~~l~~~~~~---~-------------------~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va 301 (876)
+||+||||+++|+.|+.+.+.. + ...++..++. ++++||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKD-LLRQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886421 0 0124667887 567999999999999999999999
Q ss_pred hccccCCCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 302 ~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
+|++.|+||+.|||+||||+||||...+. ...++.+.....++.||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873211 00122344556778999999975
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=3.8e-36 Score=309.69 Aligned_cols=164 Identities=20% Similarity=0.317 Sum_probs=151.9
Q ss_pred cccchHHHhhhcC-CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc---CCCCCCccchhhhhHhh
Q 002819 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (876)
Q Consensus 166 FGvpL~~ll~~~~-~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~---~~~~~D~h~VAslLK~f 241 (876)
||+||..++.+.. .||.+|.+|++||+++|+.+|||||++|+..+++++++.||.|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 9999999998754 6999999999999999999999999999999999999999998532 24568999999999999
Q ss_pred hccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhccc
Q 002819 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (876)
Q Consensus 242 LReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~ 321 (876)
||+||+||||+++|+.|+.+....+...++.+++. ++.+||++|+.+|.||+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLN-LLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 99999999999999999999998888899999998 56799999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 002819 322 LLRPLLAGE 330 (876)
Q Consensus 322 Llrp~~~~~ 330 (876)
|+|++....
T Consensus 160 Llr~~~~~~ 168 (196)
T cd04387 160 LLRPSEKES 168 (196)
T ss_pred cCCCCcccc
Confidence 999985443
No 29
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.9e-36 Score=311.20 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=161.5
Q ss_pred cccchHHHhhhc---CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc--cCC--CCCCccchhhhh
Q 002819 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS--ADEDAHVIGDCV 238 (876)
Q Consensus 166 FGvpL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~--~~~--~~~D~h~VAslL 238 (876)
||+||..++.+. ..||.+|.+|++||+.+|+.+|||||++|+..+++.+++.|+++.. .+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 4699999999999999999999999999999999999999998742 222 224899999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~---~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (876)
|.|||+||+||||+++|+.|+.+..... ...++..++. ++++||+.|+.+|+||+.||+.|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~-li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLS-IIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876543 2344667777 56799999999999999999999999999999999999
Q ss_pred HhhcccccCCCCCCCC-CcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002819 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYE 369 (876)
Q Consensus 316 i~FaP~Llrp~~~~~~-~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~ 369 (876)
+||||+||+++..+.. ++.....|...++.+ ..+...++.+||+-|.
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 207 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVSTVD-------FKQHIEVLHYLLQIWP 207 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccchhh-------HHHHHHHHHHHHHhcC
Confidence 9999999999865432 122122332233322 3456789999998763
No 30
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=3.4e-36 Score=308.38 Aligned_cols=184 Identities=27% Similarity=0.435 Sum_probs=162.8
Q ss_pred cccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc-CCCCCCccchhhhhH
Q 002819 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVK 239 (876)
Q Consensus 164 ~VFGvpL~~ll~~---~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~-~~~~~D~h~VAslLK 239 (876)
++||+||..++.+ .++||.+|.+|++||+++|+.+|||||++|+...++.+++.++.|... +..+.|||+||++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 357999999999999999999999999999999999999999999744 445689999999999
Q ss_pred hhhccCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 240 ~fLReLPePLLp~~ly~~~l~~~~~~-~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
.|||+||+||||.++|+.|+.+++.. ...+++..++. ++..||+.|+.+|.+|+.||++|++|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~-li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRD-LLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 56778889998 56799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
||+|||.+.. .++ +.....++.+++.||+|
T Consensus 160 ~P~l~~~~~~----~~~---------------~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VED---------------MKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----ccc---------------HHHHHHHHHHHHHHhcC
Confidence 9999998731 111 22345577899999987
No 31
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-36 Score=312.15 Aligned_cols=186 Identities=23% Similarity=0.380 Sum_probs=157.3
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc-CC-CCCCccchhhhhHhhhc
Q 002819 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FS-ADEDAHVIGDCVKHVLR 243 (876)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~-~~-~~~D~h~VAslLK~fLR 243 (876)
||.||.+ ++++ +|.+||+||++ |+.+|||||++|+..+++.+++.++.|... +. .++|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888843 3444 78899999998 999999999999999999999999999643 32 35799999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCc
Q 002819 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (876)
Q Consensus 244 eLPePLLp~~ly~~~l~~~~------------~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta 311 (876)
+||+||||.++|+.|+.+.+ ..+.+.++..++. ++.+||++|+.+|+||+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQL-LLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 2345677889987 5679999999999999999999999999999999
Q ss_pred chhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 312 ~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
.|||+||||+|+|++..+ ...+ ......++.||++||+||+.||+...
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999976211 1111 12334578999999999999999875
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=9.9e-37 Score=358.08 Aligned_cols=335 Identities=18% Similarity=0.262 Sum_probs=247.0
Q ss_pred eEEEEeeEee----ecC----CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCc----------ceeeeeCcEEeCCCcc
Q 002819 19 VFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG----------EVNLTLGGIDLNNSGS 80 (876)
Q Consensus 19 VvKeG~L~l~----KkG----~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~----------ev~i~Lg~I~L~~~~s 80 (876)
.-|+||||+. |+| .....|+.-|.+|.++.|+.|++.....+...+ +-.+.+.+|.+.....
T Consensus 923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~ys 1002 (1973)
T KOG4407|consen 923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYS 1002 (1973)
T ss_pred hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhhh
Confidence 5789999954 443 457889999999999999999988764322211 1222333332221111
Q ss_pred eeeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCchhhhcCc-------------cc---------
Q 002819 81 VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NG--------- 138 (876)
Q Consensus 81 v~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~a~~~g~-------------~~--------- 138 (876)
...++..|.++. .+-..|+|+|++.++|-.|+..+++..........+++. ++
T Consensus 1003 ---etkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~ 1077 (1973)
T KOG4407|consen 1003 ---ETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTV 1077 (1973)
T ss_pred ---hhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCC
Confidence 134555666653 234689999999999999999997765422111111110 00
Q ss_pred ------------cccCCCCc------------cccCcc------ccccCCCCC-----------------------CCcc
Q 002819 139 ------------IFRNDTND------------TIEGSF------HQWRDKRPV-----------------------KSLV 165 (876)
Q Consensus 139 ------------if~~~~~~------------~~~~s~------~~~k~k~~~-----------------------k~~V 165 (876)
.|.-..+. ....+. ..||+-.+. +-.+
T Consensus 1078 ~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~ 1157 (1973)
T KOG4407|consen 1078 PSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPV 1157 (1973)
T ss_pred cchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcc
Confidence 00000000 001122 233321111 1249
Q ss_pred cccchHHHhhh--cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc------cCCCCCCccchhhh
Q 002819 166 VGRPILLALED--IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDC 237 (876)
Q Consensus 166 FGvpL~~ll~~--~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~------~~~~~~D~h~VAsl 237 (876)
|||+|.+.--. .+.||.+|+.|+..++.+||.+.||||++||...|..|++.++.+.+ .++.+.|+++|.+|
T Consensus 1158 ~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSL 1237 (1973)
T KOG4407|consen 1158 LGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSL 1237 (1973)
T ss_pred cccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHH
Confidence 99999654322 35699999999999999999999999999999999999999999842 23456899999999
Q ss_pred hHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHh
Q 002819 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (876)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (876)
||.|||.||+||||..+|..||++-+..+.-+|+..|+. |++.||.++|.+|++|+.||.+|+.|+++|||-+.||||+
T Consensus 1238 LK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~-l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~ 1316 (1973)
T KOG4407|consen 1238 LKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRN-LLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIM 1316 (1973)
T ss_pred HHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEE
Confidence 999999999999999999999999999998999999999 6689999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 318 FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
|||+|+|++. | + |..+..+...++.||+.||.+|+++|.+.-
T Consensus 1317 FGPsiVRts~-------D-------n---m~tmVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1317 FGPSIVRTSD-------D-------N---MATMVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred eccceeccCC-------c-------c---HHHHhhcchhhhhHHHHHHhhhhheeccCC
Confidence 9999999872 1 1 233455667789999999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-35 Score=300.31 Aligned_cols=180 Identities=20% Similarity=0.397 Sum_probs=162.2
Q ss_pred ccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc---CCCCCCccchhhhhHhhhc
Q 002819 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHVLR 243 (876)
Q Consensus 167 GvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~---~~~~~D~h~VAslLK~fLR 243 (876)
|.+|+.......+||.+|.+|+.||+.+|+.+|||||++|+...++++++.|+.+... .....|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7788888777889999999999999999999999999999999999999999886422 2456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhccccc
Q 002819 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (876)
Q Consensus 244 eLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Ll 323 (876)
+||+||||.++|+.|+.+.+..+.++++..++. ++.+||++|+.+|++|+.||++|+.|++.|||++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKE-LIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 999999999999999999998888999999998 5679999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 002819 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (876)
Q Consensus 324 rp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny 368 (876)
|++.. ..........||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 0123446779999999998
No 34
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-35 Score=305.56 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=161.8
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcC--Cccc----CccccCCCHHHHHHHHHHhhcCCccC-----CCCCCccc
Q 002819 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (876)
Q Consensus 166 FGvpL~~ll~~~-~~VP~iL~~~i~~Le~~G--l~tE----GIFRisGs~~~I~~L~~~ld~G~~~~-----~~~~D~h~ 233 (876)
||+||..++... ..||.+|.+|+.||+++| +..+ ||||++|+...+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999874 479999999999999965 3333 99999999999999999999986332 34689999
Q ss_pred hhhhhHhhhccCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccC
Q 002819 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (876)
Q Consensus 234 VAslLK~fLReLPePLLp~~ly~~~l~~~~~------~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~N 307 (876)
||++||.|||+||+||||+++|+.|+.+... .+.++|+.+++. ++.+||++|+.+|++|+.||++|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~-~l~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQS-TLSQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887533 457889999998 567999999999999999999999987666
Q ss_pred ---CCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002819 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (876)
Q Consensus 308 ---KMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (876)
||++.|||+||||+|+|+....... ........+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~~-------------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLLT-------------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccccc-------------------cccHHHHHHHHHHHHhHHHhccc
Confidence 6999999999999999987422110 11245678999999999999986
No 35
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=7.3e-35 Score=299.53 Aligned_cols=178 Identities=20% Similarity=0.314 Sum_probs=158.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCCCCccchhhhhHhhhccCCCCCCChhhH
Q 002819 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (876)
Q Consensus 177 ~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLReLPePLLp~~ly 255 (876)
...||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|.. ......|+|+||++||.|||+||+||||+++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 35699999999999999999999999999999999999999998863 34456799999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCCCCCCCccc
Q 002819 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (876)
Q Consensus 256 ~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led 335 (876)
+.|+++.+..+.+.++..++. ++..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+.+..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQ-AISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 999999999888899999998 5579999999999999999999999 999999999999999999999763211
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002819 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (876)
Q Consensus 336 ~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (876)
..++++..+..++.+|+.||++-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 12345666677889999999987653
No 36
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-34 Score=296.84 Aligned_cols=178 Identities=22% Similarity=0.251 Sum_probs=152.3
Q ss_pred cccchHHHhhhc------CCCcHHHHHHHHHHHh-cCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhh
Q 002819 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (876)
Q Consensus 166 FGvpL~~ll~~~------~~VP~iL~~~i~~Le~-~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (876)
||+||++++.+. ..||.+|..|++||.+ +|+.+|||||++|+...++++++.+|.|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 799999999999999999999999999987666678999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcc--ccCCCCcchhhH
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHA--HENRMTPSAVAA 316 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s--~~NKMta~NLAi 316 (876)
|.|||+||+||||.++|+.|+.+... ...++. ++.+||+.|+.+|.||+.||+.|++++ +.||||+.|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~-li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVE-IVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999886532 234565 457999999999999999999999754 789999999999
Q ss_pred hhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 317 ~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
||||+|+|++..++ ...+....+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDDP-----------------RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCCH-----------------HHHHHccHHHHHHHHHHhcC
Confidence 99999999873211 12234455778999999987
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-34 Score=297.83 Aligned_cols=171 Identities=24% Similarity=0.408 Sum_probs=149.5
Q ss_pred CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHH-hhcC-----CccCCC-CCCccchhhhhHhhhccCCCCCC
Q 002819 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (876)
Q Consensus 178 ~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~-ld~G-----~~~~~~-~~D~h~VAslLK~fLReLPePLL 250 (876)
+..|.||.+|+.||+.+|+.+|||||++|+..+|++++.. ++.+ ...+.. .+|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3456689999999999999999999999999999999875 5654 223332 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCCCCC
Q 002819 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (876)
Q Consensus 251 p~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~ 330 (876)
|+++|+.|+.+.+..+.+.++..++. ++..||++|+.+|++|+.||++|++|++.|||++.|||+||||+|||+...+
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~- 183 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHS-LVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET- 183 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc-
Confidence 99999999999999888999999998 5579999999999999999999999999999999999999999999987210
Q ss_pred CCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 331 ~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
.+++......+.||++||+|
T Consensus 184 -----------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 184 -----------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred -----------------HHHHHHhHHHHHHhhhHhcC
Confidence 12344566778899999997
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=1.1e-33 Score=291.18 Aligned_cols=176 Identities=19% Similarity=0.288 Sum_probs=149.6
Q ss_pred hHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhhHhhhccCCCC
Q 002819 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (876)
Q Consensus 170 L~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLReLPeP 248 (876)
|.+.+...+.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.|+.+. ......+|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 4444444578999999999999999999999999999775 778999999863 33345789999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCC
Q 002819 249 PVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (876)
Q Consensus 249 LLp~~ly~~~l~~~~-~~~~eeri~~lk~lLl~--~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp 325 (876)
|||+++|+.|+++.. ..+.++++..++. +++ .||+.|+.+|+|||.||++|++|+..|+|++.|||+||||+|||+
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~-li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~ 162 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRK-LIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRF 162 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHH-HHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCC
Confidence 999999999999874 5567788999998 444 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 002819 326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (876)
Q Consensus 326 ~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny 368 (876)
+... +. .......+|++||.++
T Consensus 163 ~~~~---~~------------------~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 163 QPAS---SD------------------SPEFHIRIIEVLITSE 184 (200)
T ss_pred Cccc---cc------------------chhhHHHHHHHHHHHH
Confidence 7431 11 1234578999999863
No 39
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=6.6e-31 Score=264.33 Aligned_cols=170 Identities=28% Similarity=0.486 Sum_probs=154.5
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccC--CCCCCccchhhhhHhhhccCCCCCCChhhHH
Q 002819 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (876)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~--~~~~D~h~VAslLK~fLReLPePLLp~~ly~ 256 (876)
.||.+|..|+.||+++|+++|||||++|+..+++++++.++.|.... ...+|+|+||++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999997544 6789999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCCCCCCCcccc
Q 002819 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (876)
Q Consensus 257 ~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led~ 336 (876)
.|+.+....+..+++..++. ++.+||+.|+.+|.+|+.||+.|+.+++.|+|++.|||+||||+|+|++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~------ 154 (174)
T smart00324 82 EFIEAAKVEDETERLRALRE-LISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV------ 154 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH------
Confidence 99999988888899999998 56799999999999999999999999999999999999999999999873210
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 337 ~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
.......+...+|++||+|
T Consensus 155 ------------~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 155 ------------ASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred ------------HHHHHHHHHHHHHHHHHhc
Confidence 1234456788999999997
No 40
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=4.7e-31 Score=303.14 Aligned_cols=323 Identities=18% Similarity=0.321 Sum_probs=234.6
Q ss_pred CceEEEEeeEeeecCC--------CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee--ec--
Q 002819 17 NTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VR-- 84 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~--------~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~--~~-- 84 (876)
+.++..|+||..-... .+..-.++||||-++.|+||.+.+...|.+ .|.+.....+. ..
T Consensus 490 ~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~---------lI~~~Eivclav~~pd~ 560 (1186)
T KOG1117|consen 490 QSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG---------LININEIVCLAVHPPDT 560 (1186)
T ss_pred ccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc---------eeeccceEEEeecCCCC
Confidence 4566679999663321 244468999999999999999998876443 22222211110 01
Q ss_pred -cCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCchh---------------------hhcCccccccC
Q 002819 85 -EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAA---------------------LVMGHNGIFRN 142 (876)
Q Consensus 85 -~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~a---------------------~~~g~~~if~~ 142 (876)
..-.++|++......+|.|+|.+++..++..|..+|.++.. |.-+ +.-.++++|.-
T Consensus 561 ~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhfv--p~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl 638 (1186)
T KOG1117|consen 561 YPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHFV--PLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSL 638 (1186)
T ss_pred CCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhcC--chHHHHhccchhhhhhhhhhcChhhhhhccccceec
Confidence 12233443333334579999999999999999999998853 2111 11123566654
Q ss_pred CCCcc--------ccCc--------------c-ccccCCCCCCCcccccc----------------------------hH
Q 002819 143 DTNDT--------IEGS--------------F-HQWRDKRPVKSLVVGRP----------------------------IL 171 (876)
Q Consensus 143 ~~~~~--------~~~s--------------~-~~~k~k~~~k~~VFGvp----------------------------L~ 171 (876)
+.+.. .+.+ + .+..++...--..=|+. |.
T Consensus 639 ~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~Lq 718 (1186)
T KOG1117|consen 639 DGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTALQ 718 (1186)
T ss_pred CCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchhh
Confidence 43321 1111 1 11111100000001222 22
Q ss_pred HHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccC---CCCCCccchhhhhHhhhccCCCC
Q 002819 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPSS 248 (876)
Q Consensus 172 ~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~---~~~~D~h~VAslLK~fLReLPeP 248 (876)
+..-..+.||.||..||.|+-++|+..|||||++|...++.+|...|-++...+ ..+..+.+|+++||+|||+|++|
T Consensus 719 eqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdlddp 798 (1186)
T KOG1117|consen 719 EQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDP 798 (1186)
T ss_pred hhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcc
Confidence 221124679999999999999999999999999999999999999998775332 24567899999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCCC
Q 002819 249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLA 328 (876)
Q Consensus 249 LLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~ 328 (876)
|+|.++|..|+++....++++++..+.. ++..||.+||.||+.||.||++|..++++|+|+++|||.||||+||...-
T Consensus 799 Lft~~~~~~w~eaae~~d~~Er~~rY~~-lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg- 876 (1186)
T KOG1117|consen 799 LFTKELYPYWIEAAETQDDKERIKRYGA-LIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG- 876 (1186)
T ss_pred ccchhhhhhHHHhhhccchHHHHHHHHH-HHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC-
Confidence 9999999999999999999999999998 55799999999999999999999999999999999999999999998751
Q ss_pred CCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 329 GECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 329 ~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
. ..+..+|++.||.+|..||.-++
T Consensus 877 -------------q-----------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 877 -------------Q-----------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred -------------C-----------chhhhhHHHHHhcCceEEEEecH
Confidence 1 12467899999999999998654
No 41
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-30 Score=299.66 Aligned_cols=318 Identities=19% Similarity=0.325 Sum_probs=231.2
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCC---CcceeeeeCcEEeCCCcce--eeccCCceEEEEecCCCCCceEEEEeC
Q 002819 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSV--VVREDKKLLTVLFPDGRDGRAFTLKAE 108 (876)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~---~~ev~i~Lg~I~L~~~~sv--~~~~~Kk~~fvIt~~~~~gRty~LqAd 108 (876)
...|..-|..+.+..++||.+......-+ ...-........+.+.... .....++ +++......+..|+++-.
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 347 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRK--NTLWLTTNRTSKVLNRSH 347 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCcc--ceeeeeecCCceeeecCC
Confidence 34499999999999999999876554222 0000011111111111110 0011222 233333334578999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCchhhhcCccccccCC--CCc--------------------------cc---cC-------
Q 002819 109 TSEDLYEWKTALELALAQAPSAALVMGHNGIFRND--TND--------------------------TI---EG------- 150 (876)
Q Consensus 109 SeeE~~eWI~AIr~al~~ap~~a~~~g~~~if~~~--~~~--------------------------~~---~~------- 150 (876)
++.....|..++..++...++.+..-.+ |+.+.. ..+ .+ .+
T Consensus 348 net~~~d~~~~~~~~~~~~~~~~s~~s~-g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~ 426 (650)
T KOG1450|consen 348 NETSFEDWSSNLPEVINELPNSASPNSQ-GDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQ 426 (650)
T ss_pred CCccccchhhcchhhhhccCCCCCCCCC-CCCCCCCCCCccccccccCcccccCcccccccccccccceecCCccccccc
Confidence 9999999999999998755553322111 110000 000 00 00
Q ss_pred --------------ccccccCC-CCCCCcccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHH
Q 002819 151 --------------SFHQWRDK-RPVKSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRR 214 (876)
Q Consensus 151 --------------s~~~~k~k-~~~k~~VFGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L 214 (876)
-....+++ .+.+..|||++|+.+|++. +.||.||..|+..|+..|++..||||++|+...|.+|
T Consensus 427 ~~~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnkl 506 (650)
T KOG1450|consen 427 DPQKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKL 506 (650)
T ss_pred chHHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHH
Confidence 00111222 2223789999999999875 5699999999999999999999999999999999999
Q ss_pred HHHhhcCC-ccC--CCCCCccchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 002819 215 VQEYEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQ 291 (876)
Q Consensus 215 ~~~ld~G~-~~~--~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~ 291 (876)
+.++|... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+.. ++..||.+|+.||+
T Consensus 507 r~~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~-li~~lP~~n~~Tlr 585 (650)
T KOG1450|consen 507 REQSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEE-LIGLLPDANYQTLR 585 (650)
T ss_pred HHhcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHH-HHhhCCCcchhHHH
Confidence 99999543 222 344799999999999999999999999999999999999998999999998 45799999999999
Q ss_pred HHHHHHHHHHhccccCCCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002819 292 RILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (876)
Q Consensus 292 ~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (876)
||+.||++|..|++.|||+.+||||||||+|+.+.... + ..+.....+..||+.||+++..+
T Consensus 586 ~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~-----------~-------~~a~~~~~~~~ivq~lle~~~~~ 647 (650)
T KOG1450|consen 586 YLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET-----------S-------SEAIHSTYQSQIVQLLLENVSSA 647 (650)
T ss_pred HHHHHHHHHHhccccccccccceEEEeccccccccccc-----------c-------chhhHHhHHHHHHHHHHHhhHhh
Confidence 99999999999999999999999999999999965210 0 11233456789999999999999
Q ss_pred cC
Q 002819 372 FD 373 (876)
Q Consensus 372 F~ 373 (876)
|+
T Consensus 648 f~ 649 (650)
T KOG1450|consen 648 FG 649 (650)
T ss_pred cc
Confidence 97
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=4.4e-29 Score=287.21 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=175.4
Q ss_pred CCCCCcccccchHHHhhh----cCCCcHHHHHHHH-HHH-hcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCcc
Q 002819 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALR-FLE-KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAH 232 (876)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~----~~~VP~iL~~~i~-~Le-~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h 232 (876)
......||||++..+... .+.||.++.-+.. +|+ +.|++.|||||+.|....++.++++||.|.+......|||
T Consensus 140 ls~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH 219 (577)
T KOG4270|consen 140 LSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVH 219 (577)
T ss_pred ccchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHH
Confidence 334567999999776543 3447999988888 666 4889999999999999999999999999975443378999
Q ss_pred chhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcc
Q 002819 233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (876)
Q Consensus 233 ~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~ 312 (876)
+||++||.|||+||+|++++++|++|+.+++..+.+++...++. ++.+||+.|+.+|+|+|.||+.|++++++||||++
T Consensus 220 ~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~-~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~ 298 (577)
T KOG4270|consen 220 CLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQ-CLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR 298 (577)
T ss_pred HHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHH-HHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 99999999999999999999999999999999999999999998 66899999999999999999999999999999999
Q ss_pred hhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccc
Q 002819 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLH 378 (876)
Q Consensus 313 NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~l~ 378 (876)
||||||||+|+|+.. ....++.+....+.+..+|+..|+++++.|+...-+
T Consensus 299 NlAiV~gPNl~~~~~---------------p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~~ 349 (577)
T KOG4270|consen 299 NLAIVFGPNLLWMKD---------------PLTALMYAVQVSNFLKGLIEKTLEERDTSFPGELEF 349 (577)
T ss_pred hceeEecCCccccCC---------------hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 999999999999872 123344555556667778888888999988887644
No 43
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.96 E-value=9.1e-30 Score=285.66 Aligned_cols=211 Identities=24% Similarity=0.345 Sum_probs=173.6
Q ss_pred CCcccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc---cCCCCCCccchhhh
Q 002819 162 KSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDC 237 (876)
Q Consensus 162 k~~VFGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~---~~~~~~D~h~VAsl 237 (876)
.+.||||||..++++. -.||.+|.+++.||+++|++++||||++|...+|+.|++.++.... ..++....|++|++
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 4689999999999874 4699999999999999999999999999999999999999887432 22345678999999
Q ss_pred hHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHh
Q 002819 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (876)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (876)
||.|||+||+||||.++.+.|+.+++.....+++.+++.+|+ .||.+||.+|+.|+.||.+|+.+.+.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 999999999999999999999999999999999999998777 9999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCC---CcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 318 MAPLLLRPLLAGEC---ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 318 FaP~Llrp~~~~~~---~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
|||+||........ .+-.-..-.|.... ..+..+.-+..++..||.+++.+|....
T Consensus 456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~~---kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 456 MAPSLFHLNALKLDSSPRVRQKKSETGKPDQ---KELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred hcchHHhhccCCCCCCccccccccccCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999986532211 00000000111111 1122333456789999999999998765
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=1.7e-29 Score=264.80 Aligned_cols=142 Identities=18% Similarity=0.288 Sum_probs=128.6
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccccCCCHHH----HHHHHHHhhcCCccCCCCCCccchhhhhHhhhccCCCCCCChhh
Q 002819 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASC 254 (876)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~----I~~L~~~ld~G~~~~~~~~D~h~VAslLK~fLReLPePLLp~~l 254 (876)
.||.+|.+|++||+++|+.+|||||++|+... ++.+++.+|.|.... ...|+|+||++||.|||+||+||||+++
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~ 127 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL 127 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence 48999999999999999999999999999999 999999999996433 6789999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-hCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCC
Q 002819 255 CTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (876)
Q Consensus 255 y~~~l~~~~~~~~eeri~~lk~lLl~-~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~ 327 (876)
|+.|+.+... + . ..++. +++ .||++|+.+|.||+.||++|+.+++.|+|++.|||+||||+|+|++.
T Consensus 128 y~~~~~~~~~-~-~---~~~~~-ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 128 YERLLEAVAN-N-E---EDKRQ-VIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHhcC-c-H---HHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 9999998722 2 1 23444 557 99999999999999999999999999999999999999999999884
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=6.7e-29 Score=246.91 Aligned_cols=168 Identities=32% Similarity=0.540 Sum_probs=151.9
Q ss_pred cHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc-CCCCCCccchhhhhHhhhccCCCCCCChhhHHHHH
Q 002819 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (876)
Q Consensus 181 P~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~-~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~l 259 (876)
|.+|..|+.||+++|+.++||||++|+..+++.+++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999755 56788999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCCCCCCCcccccCC
Q 002819 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (876)
Q Consensus 260 ~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led~~~~ 339 (876)
.+....+...++..++. ++..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|+++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~-~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKE-LLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 99998888999999998 5569999999999999999999999999999999999999999999987321
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (876)
Q Consensus 340 ~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (876)
............+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 11233455677899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=2e-29 Score=291.32 Aligned_cols=185 Identities=21% Similarity=0.382 Sum_probs=163.0
Q ss_pred CCCCCcccccchHHHhh-----hcCCCcHHHHHHHHHHH-hcCCcccCccccCCCHHHHHHHHHHhhcC-CccC---CCC
Q 002819 159 RPVKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF---SAD 228 (876)
Q Consensus 159 ~~~k~~VFGvpL~~ll~-----~~~~VP~iL~~~i~~Le-~~Gl~tEGIFRisGs~~~I~~L~~~ld~G-~~~~---~~~ 228 (876)
...++.|||.||...+. +..++|+||++|++||+ .+|++.|||||++|....|+.|++.||.+ ..++ ..+
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence 34467899987754432 23579999999999999 59999999999999999999999999998 3222 356
Q ss_pred CCccchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCC
Q 002819 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (876)
Q Consensus 229 ~D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NK 308 (876)
.|||+|||+||+|||+||+|||+.++|..|...+...+...+..++..+ +..||++|+.+|.+|+.||.+|+.++.+||
T Consensus 973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~l-i~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen 973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDL-ISSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHH-HHhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence 8999999999999999999999999999999999999999999999985 568999999999999999999999999999
Q ss_pred CCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 309 Mta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
|+.+|||+||+|+|.+|. .+...+|-||+-||.+..
T Consensus 1052 MnlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVM 1087 (1112)
T ss_pred ccccceeeeecccccCcH--------------------------------Hhhhhhccchhhhhccch
Confidence 999999999999999986 234567788999998765
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2.7e-28 Score=239.23 Aligned_cols=145 Identities=31% Similarity=0.540 Sum_probs=136.1
Q ss_pred cHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc--CCCCCCccchhhhhHhhhccCCCCCCChhhHHHH
Q 002819 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (876)
Q Consensus 181 P~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~--~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~ 258 (876)
|.+|..|++||+++|+.++||||++|+..+++++++.++.|... ....+|+|+||++||.||++||+||||.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999765 6778999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCC
Q 002819 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (876)
Q Consensus 259 l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~ 326 (876)
+.+.+..+.++++..++. ++.+||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRS-LLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHH-HHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHH-hhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 998888899999999998 5679999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=2.3e-27 Score=258.62 Aligned_cols=201 Identities=25% Similarity=0.354 Sum_probs=174.1
Q ss_pred CCCCCCCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcC-CcccCccccCCCHHHHHHHHHHhhcCCccCCCCC-Cc
Q 002819 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE-DA 231 (876)
Q Consensus 157 ~k~~~k~~VFGvpL~~ll~~---~~~VP~iL~~~i~~Le~~G-l~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~-D~ 231 (876)
.+.++.+.-||+||..+.+. +..||.+|..|+.||..+| +.+|||||.+++...+.++.+.+++|..+..+.+ |+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 35677899999999887765 4679999999999999999 9999999999999999999999999986555444 59
Q ss_pred cchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCc
Q 002819 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (876)
Q Consensus 232 h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta 311 (876)
|..|.++|.|||+||+||+++++|..+....... ...+...++.++-.+||+.|+.+|++++.||.+|++|+..|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~-~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVD-KSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccch-HHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999999999999999999999999887776554 467788888866656999999999999999999999999999999
Q ss_pred chhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCccc
Q 002819 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (876)
Q Consensus 312 ~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~l 377 (876)
.|||+||||+|+|+.... + .+.+.+.++.++++||+||..||..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s---~----------------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDES---L----------------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeeccccccccccc---c----------------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 999999999999987211 0 1233566889999999999999998763
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=1.6e-26 Score=257.23 Aligned_cols=205 Identities=22% Similarity=0.371 Sum_probs=168.9
Q ss_pred CCCcccccchHHHhhh-------------cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcC-----C
Q 002819 161 VKSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----K 222 (876)
Q Consensus 161 ~k~~VFGvpL~~ll~~-------------~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G-----~ 222 (876)
..+.+||+++...+.. ...||.+|.+|+.||.++|+.+.||||+.|+..+|++|.+.|+.+ +
T Consensus 62 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~ 141 (412)
T KOG2710|consen 62 LDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGID 141 (412)
T ss_pred cceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccccc
Confidence 3455677766554322 234999999999999999999999999999999999999999998 3
Q ss_pred ccCCCCCCccchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHh
Q 002819 223 TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (876)
Q Consensus 223 ~~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~ 302 (876)
...++++++|+||++||.|||+||+||||.++|+.|+..+.....++++..++. ++..||++|+.+|.+|+.||+.|+.
T Consensus 142 ~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l-~~~llp~~nr~~l~~ll~fL~~~a~ 220 (412)
T KOG2710|consen 142 VNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQL-LIYLLPKCNRDTLEVLLGFLSVVAS 220 (412)
T ss_pred ccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHH-HHHhcCccchhHHHHHHhhhhhhhc
Confidence 455677899999999999999999999999999999999999988899999997 5569999999999999999999999
Q ss_pred ccccC-----------CCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002819 303 HAHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (876)
Q Consensus 303 ~s~~N-----------KMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (876)
|++.| +|++.|||.||+|+|+.........+.- ...+..+ ....+..++..||+||+.+
T Consensus 221 ~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~~~~s~--~~~~~~s--------~~~~i~~~~~~~~~N~e~~ 290 (412)
T KOG2710|consen 221 HAEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSHKELSV--TGVANES--------ESEAIVNFAQMMIENLEAL 290 (412)
T ss_pred ccccccccccccccCcccchhhhhhhhcchhhhcccCCCccccc--ccccchh--------hHHHHHHHHHHhhhhHHHh
Confidence 99999 9999999999999999953211111111 1111111 2234668899999999999
Q ss_pred cCCcc
Q 002819 372 FDDES 376 (876)
Q Consensus 372 F~~~~ 376 (876)
|..+.
T Consensus 291 f~ip~ 295 (412)
T KOG2710|consen 291 FQIPP 295 (412)
T ss_pred hcCCc
Confidence 99554
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-27 Score=268.46 Aligned_cols=241 Identities=19% Similarity=0.196 Sum_probs=217.5
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhh
Q 002819 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (876)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (876)
.+.++.+||.||..+|.+.+ +|..+.+++-+|...|.-++||||..++...++.+++.++.|..+..+...+|++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 45668899999999999877 99999999999999999999999999999999999999999987777788999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||.+|..+|..++|+.|+.+....+.+++|.+|++ +..+||..|..+|++|+..| .|..++.+|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r-~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIER-QGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHH-HHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 99999999999999999999999999999999999999 67899999999999999999 99999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccccccCCCCCCCCCCCCCCCCc
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~l~~~s~~~~ss~~~~~sedssd 398 (876)
+|+++++......+++.+++ +++.-+++|||+||-.|||+++. +++.+++.++...++.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~---~~fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIE---GIFRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhccccc---ceeecccccccchhhhhh
Confidence 99999998766655555432 34567899999999999999985 556666777788888999
Q ss_pred cccccccCCCCCCCCCCCCCCCCC
Q 002819 399 EENLDMKNNGYHDAQNEVDPESDD 422 (876)
Q Consensus 399 ~~~~~~~d~syds~e~e~~~~~d~ 422 (876)
-+..++ |+.||+.+++++.+.|.
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 888888 99999999988876654
No 51
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.90 E-value=6.8e-24 Score=191.64 Aligned_cols=87 Identities=61% Similarity=0.747 Sum_probs=84.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 614 ~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~-~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
+||.+.+++|.+|||||.+||+||++|+++|.|||+||++++|++ ++|++||+++++||+|||+||+||++||++|++|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999988 5889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 002819 693 HHQLNQQR 700 (876)
Q Consensus 693 ~~~l~~~~ 700 (876)
|++|++||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 52
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=4.5e-24 Score=262.31 Aligned_cols=162 Identities=27% Similarity=0.439 Sum_probs=150.2
Q ss_pred ccccchHHHhh-hcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhhHhhh
Q 002819 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (876)
Q Consensus 165 VFGvpL~~ll~-~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fL 242 (876)
.||+.|..++. ....||.++.+|+.||+.+|+.+|||||++|...+++.|...|+.|. .+...+.|+|+|++|||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999988 46789999999999999999999999999999999999999999986 55667899999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhH
Q 002819 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (876)
Q Consensus 243 ReLPePLLp~~ly~~~l~~~~~~~~e------eri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi 316 (876)
|+||+|||++..|+.|+.+.+..... +++..+.. ++..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKE-VLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHH-HHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999999883333 48888988 567999999999999999999999999999999999999
Q ss_pred hhcccccCCCC
Q 002819 317 CMAPLLLRPLL 327 (876)
Q Consensus 317 ~FaP~Llrp~~ 327 (876)
||||+|+|++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 53
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.87 E-value=5.9e-22 Score=218.23 Aligned_cols=148 Identities=24% Similarity=0.359 Sum_probs=135.8
Q ss_pred CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCCCCccchhhhhHhhhccCCCCCCChhhHH
Q 002819 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (876)
Q Consensus 178 ~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~ 256 (876)
.-||.+|..|+..|+.+|+..+||||++|....+++|+++|-+|+. ......|+|+||++||+|||.|.+||||+.+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 3599999999999999999999999999999999999999999984 445678999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCC
Q 002819 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (876)
Q Consensus 257 ~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~ 327 (876)
+|+.+....+...-+.++-.++. .||..||.+|.|||-|+++|++ +..|||+..|||.+|||+|+..+.
T Consensus 440 df~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~v 508 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAV 508 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCC
Confidence 99999998887777777776554 8999999999999999999887 779999999999999999998653
No 54
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-17 Score=196.07 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=146.7
Q ss_pred CcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcC-CccC-CCCCCccchhhhhHh
Q 002819 163 SLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVKH 240 (876)
Q Consensus 163 ~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G-~~~~-~~~~D~h~VAslLK~ 240 (876)
...||.||..+......||.++.+|+.||+..|+.+|||||++|+......++.+|.+. .... .-+..+|++|+.+|.
T Consensus 915 s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlks 994 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKS 994 (1100)
T ss_pred hhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchh
Confidence 46899999888887889999999999999999999999999999999999999998873 3222 235679999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcc
Q 002819 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (876)
Q Consensus 241 fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (876)
||..||+||+|+.+...|.+++.+.+...++..++. .+..||+.|+.+|+|++.||.+|+..-.+|.||..||.|||+|
T Consensus 995 ffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~-~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~ 1073 (1100)
T KOG4271|consen 995 FFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLRE-ASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPT 1073 (1100)
T ss_pred hhhhCCCcccCccCCcchhhhhhcccchhhccchhh-HhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 999999999999999999999999999999999998 5579999999999999999999999999999999999999988
Q ss_pred ccc
Q 002819 321 LLL 323 (876)
Q Consensus 321 ~Ll 323 (876)
.|+
T Consensus 1074 ~~~ 1076 (1100)
T KOG4271|consen 1074 LLM 1076 (1100)
T ss_pred hHH
Confidence 776
No 55
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.70 E-value=5.8e-17 Score=171.76 Aligned_cols=163 Identities=21% Similarity=0.273 Sum_probs=137.6
Q ss_pred cccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccC--C--CCCCccchhhhh
Q 002819 164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--S--ADEDAHVIGDCV 238 (876)
Q Consensus 164 ~VFGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~--~--~~~D~h~VAslL 238 (876)
.|||.+|+-++.+. ..-|+++.+|+..|+++|++.-|+|+++|++..-+.|++.|+.....+ . ..-|.++|++++
T Consensus 183 gvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~ 262 (442)
T KOG1452|consen 183 GVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDS 262 (442)
T ss_pred cccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeeccc
Confidence 49999999999874 568889999999999999999999999999999999999998764222 1 125888999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~---~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (876)
|.||||||+|||+...|...+++... .+.+--...+-. |+..||..++.+|..++.||..|..++..|+|++..||
T Consensus 263 kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls 341 (442)
T KOG1452|consen 263 KDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLS 341 (442)
T ss_pred HhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHH
Confidence 99999999999999999888877542 122223334444 66799999999999999999999999999999999999
Q ss_pred HhhcccccCCCC
Q 002819 316 ACMAPLLLRPLL 327 (876)
Q Consensus 316 i~FaP~Llrp~~ 327 (876)
.||||.||-...
T Consensus 342 ~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 342 LIFAPLLFFCLD 353 (442)
T ss_pred HHhhhhHHHhhc
Confidence 999999987653
No 56
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.66 E-value=5.9e-16 Score=143.32 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=71.4
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeecc------CCceEEE
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKLLTV 92 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~------~Kk~~fv 92 (876)
|+|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +++.|+|..+ .+.... .+.++|.
T Consensus 2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~-~v~~~~~~~~~~~~~~~F~ 69 (100)
T cd01233 2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTA-RVEHSEDQAAMVKGPNTFA 69 (100)
T ss_pred cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEeccc-EEEEccchhhhcCCCcEEE
Confidence 78999776 7787889999999999999999999988764 4555666643 221111 2567887
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
|... .|+|+|+|+|++|+.+||.+|+...
T Consensus 70 I~t~---~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 70 VCTK---HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EECC---CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 7543 4999999999999999999998764
No 57
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.64 E-value=1.2e-15 Score=158.73 Aligned_cols=185 Identities=16% Similarity=0.207 Sum_probs=143.1
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHH--HHHHhcCCcc--cCccccCCCHHHHHHHHHHhhcCCcc--CCCCCCcc----
Q 002819 164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAH---- 232 (876)
Q Consensus 164 ~VFGvpL~~ll~~-~~~VP~iL~~~i--~~Le~~Gl~t--EGIFRisGs~~~I~~L~~~ld~G~~~--~~~~~D~h---- 232 (876)
.+||+|+.+-+.+ +...|..+.... +++..+.++. -|+|++++-..-+...++.++..... .......+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899998555544 445677765555 5555544443 79999999888899999988875421 11111222
Q ss_pred -------chhhhhHhhhccCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHh
Q 002819 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (876)
Q Consensus 233 -------~VAslLK~fLReLPePLLp~~ly~~~l~~~~---~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~ 302 (876)
+|+.+++.||++||+||+|..+|+.|+.++. ....+.+++++|-+++ .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998888776 4457889999997555 9999999999999999999999
Q ss_pred cc-------ccCCCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Q 002819 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (876)
Q Consensus 303 ~s-------~~NKMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (876)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+.+||.-+
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 94 25666 999999999999872 11 1235689999999999999865
Q ss_pred c
Q 002819 376 S 376 (876)
Q Consensus 376 ~ 376 (876)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 58
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.63 E-value=1.7e-15 Score=141.19 Aligned_cols=91 Identities=29% Similarity=0.457 Sum_probs=67.0
Q ss_pred EEEeeEeeecCCC-CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcc---ee----e--ccCCceE
Q 002819 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS---VV----V--REDKKLL 90 (876)
Q Consensus 21 KeG~L~l~KkG~~-~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~s---v~----~--~~~Kk~~ 90 (876)
|+|||. |+|+. .++|++|||||+++.|+||+++.+..|. |.|+|..+.. |. . .....++
T Consensus 1 KeG~L~--K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~---------G~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEGFME--KTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAK---------GEVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred CceeEE--ecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcC---------cEEEeeccccceeEeccCCccccccccce
Confidence 689665 77775 6999999999999999999998877533 3444443221 11 0 1122347
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|.|... +|+|+|+|+|++|+.+||.||+.++.
T Consensus 70 F~i~t~---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVTP---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEeC---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 766543 59999999999999999999999985
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.59 E-value=4.4e-15 Score=137.59 Aligned_cols=91 Identities=27% Similarity=0.402 Sum_probs=71.4
Q ss_pred EEEeeEeeecCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccC------CceEE
Q 002819 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (876)
Q Consensus 21 KeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~------Kk~~f 91 (876)
.+| |+.|+|+ .+++|++|||||+++.|+|||+.....| ..+.|+|+.+.+|....+ +.+||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--------~~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--------DDCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCC--------CCceEEcccceEEeeccccccccccCcEE
Confidence 579 5567777 7999999999999999999998866532 125678887777644332 24789
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
.|.... |+|+|+|+|++++++||++|+.|+
T Consensus 72 ei~tp~---rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTAD---KTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcCC---ceEEEEeCCHHHHHHHHHHHHhhC
Confidence 886543 999999999999999999998763
No 60
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.57 E-value=7.6e-15 Score=137.47 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=68.2
Q ss_pred EEEEeeEeeecCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec---c------CC
Q 002819 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK 87 (876)
Q Consensus 20 vKeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~---~------~K 87 (876)
+|+||||+..+|. ++++|++|||||+++.|+||+++.+... -+.|.|+|..+..+... . .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~-------~~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRG-------SKKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccccc-------CcceeEECCcceEEEEecCCcCccccccc
Confidence 5899998554332 3569999999999999999999876411 14455666665443221 1 24
Q ss_pred ceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 88 k~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.++|.|... +++|+|+|+|++|+++||.||+.+
T Consensus 74 ~~~F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 678877654 489999999999999999999864
No 61
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.57 E-value=1.3e-14 Score=132.80 Aligned_cols=92 Identities=27% Similarity=0.370 Sum_probs=67.8
Q ss_pred EEEeeEeeec-CC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-ccCCceEEEEecCC
Q 002819 21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (876)
Q Consensus 21 KeG~L~l~Kk-G~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-~~~Kk~~fvIt~~~ 97 (876)
++|||+++.+ ++ ..+.|++|||||+++.|+||+++.+..+ .+.|+|..+..... ...++++|.|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~---------~~~I~L~~~~v~~~~~~~k~~~F~I~~-- 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKA---------EGLIFLSGFTIESAKEVKKKYAFKVCH-- 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCcc---------ceEEEccCCEEEEchhcCCceEEEECC--
Confidence 6899986543 22 4779999999999999999999987652 23344444322111 245778888863
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 98 ~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.+.++|+|+|+|++++++||.+|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 33599999999999999999999864
No 62
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.56 E-value=1.6e-14 Score=132.62 Aligned_cols=90 Identities=22% Similarity=0.359 Sum_probs=66.9
Q ss_pred EEeeEeeecCCCCCCcEEEEEEEeC--CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCC
Q 002819 22 SGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (876)
Q Consensus 22 eG~L~l~KkG~~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~ 99 (876)
+|||++...++..+.|++|||||++ +.|+||+++.+.. ++|.|+|..+..+.....++++|.|...
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t~--- 69 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHSN--- 69 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEcC---
Confidence 5977744322248999999999984 5899999988765 5666777764433233344667776543
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 002819 100 GRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 100 gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
+|+|+|+|+|++|+++||.+|+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 599999999999999999999875
No 63
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=4e-14 Score=136.13 Aligned_cols=96 Identities=26% Similarity=0.495 Sum_probs=72.6
Q ss_pred EEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee--ccCCceEEEEecCC
Q 002819 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLFPDG 97 (876)
Q Consensus 20 vKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~--~~~Kk~~fvIt~~~ 97 (876)
+|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|.|..+. +.. ...+++||.|....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~ 68 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVS-IREVEDPSKPFCFELFSPS 68 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcE-EEEcccCCCCeeEEEECCc
Confidence 4789777 7777789999999999999999999987664 44556666432 222 23467788665433
Q ss_pred C------------------CCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 98 R------------------DGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 98 ~------------------~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
. ..++|+|+|+|++|+.+||+||+.++...
T Consensus 69 ~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 69 DKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred cccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 2 23789999999999999999999998643
No 64
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.54 E-value=3e-14 Score=130.92 Aligned_cols=90 Identities=27% Similarity=0.490 Sum_probs=66.4
Q ss_pred EEEeeEeeecCCCCCCcEEEEEEEeC--CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec---------cCCce
Q 002819 21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKL 89 (876)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~---------~~Kk~ 89 (876)
.+|||+ |+|...+.|++|||||++ +.|+||+++.+..| .|.|+|..+..+... ..+.+
T Consensus 1 ~~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---------~g~I~L~~~~~v~~~~~~~~~~~~~~~~~ 69 (101)
T cd01235 1 CEGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE---------KGCIDLAEVKSVNLAQPGMGAPKHTSRKG 69 (101)
T ss_pred CeEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCcc---------ceEEEcceeEEEeecCCCCCCCCCCCCce
Confidence 379666 888889999999999994 49999999877653 344555544332211 12445
Q ss_pred EEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 90 ~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
+|.+.. .+|+|+|+|++++++.+||.||+.++
T Consensus 70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 666543 35999999999999999999999864
No 65
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=6.1e-14 Score=130.90 Aligned_cols=90 Identities=30% Similarity=0.531 Sum_probs=66.5
Q ss_pred EEEeeEeeecC-------CCCCCcEEEEEEEe-CCeeeEecCCC-CCCCCCCcceeeeeCcEEeCCCcceeecc---CCc
Q 002819 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (876)
Q Consensus 21 KeG~L~l~KkG-------~~~k~WKKRWFVL~-~~~L~YYKd~~-~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~---~Kk 88 (876)
++|||++..-| ..+++|+||||||+ ++.|+||++.. +.. +.|.|+|+.+..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 47999866544 24899999999998 56888887663 443 45667887766654432 334
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
++|.|... .|+|+|.|+|++|+++|+.+|..
T Consensus 72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILTP---DKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEECC---CceEEEEeCCHHHHHHHHHHHHh
Confidence 67776543 39999999999999999999863
No 66
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.50 E-value=1e-13 Score=142.83 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhcCCcccCc---cccCCCHHHHHHHHH-HhhcCC--ccC-------CCCCCccchhhhhHhhhccCCCC
Q 002819 182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPSS 248 (876)
Q Consensus 182 ~iL~~~i~~Le~~Gl~tEGI---FRisGs~~~I~~L~~-~ld~G~--~~~-------~~~~D~h~VAslLK~fLReLPeP 248 (876)
.+|..|.+.|+.+|+++++| ||..++...++.++. .|+.+. ... ....|||+|+++||.|||.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999 999999999998865 455442 111 23479999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCC
Q 002819 249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (876)
Q Consensus 249 LLp~-~ly~~~l~~~~~~~~eeri~~lk~lLl~~L-P~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~ 326 (876)
+++. +.|..|...-+..+ .-..+++.+|-..+ |+.|+.++..+|.+|..|+.|+..|+|+..+|+.+|||.+|..+
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 9999 99999999644332 22337776444333 78899999999999999999999999999999999999999977
Q ss_pred C
Q 002819 327 L 327 (876)
Q Consensus 327 ~ 327 (876)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 4
No 67
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.49 E-value=1.2e-13 Score=125.92 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=68.3
Q ss_pred EEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCc
Q 002819 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (876)
Q Consensus 22 eG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gR 101 (876)
+|||+ |.|...++|++|||||+++.|.||+++.+.... +.|.|+|..+..+ ....++++|.|... .++
T Consensus 2 ~G~L~--K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~-------~~G~I~L~~~~i~-~~~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NGVLS--KWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHG-------CRGSIFLKKAIIA-AHEFDENRFDISVN--ENV 69 (91)
T ss_pred ceEEE--EeccccCCCceEEEEEECCEEEEEecCccCcCC-------CcEEEECcccEEE-cCCCCCCEEEEEeC--CCe
Confidence 69555 889999999999999999999999998765321 3455777664332 22344577877532 259
Q ss_pred eEEEEeCCHHHHHHHHHHHHH
Q 002819 102 AFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 102 ty~LqAdSeeE~~eWI~AIr~ 122 (876)
+|+|.|++++|+++||.||+.
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999975
No 68
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.48 E-value=1.8e-13 Score=127.14 Aligned_cols=92 Identities=27% Similarity=0.379 Sum_probs=68.3
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeCC------eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec--cCCce
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKL 89 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~------~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~--~~Kk~ 89 (876)
.|+|+|||. |. ++|+||||||+++ .|.||++++.....+ ..+.+.|+|..|..+... ..+++
T Consensus 1 ~v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~ 70 (101)
T cd01257 1 DVRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRH 70 (101)
T ss_pred CccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCe
Confidence 479999776 43 6899999999988 799999987531110 115667888887765443 23347
Q ss_pred EEEEecCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002819 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 90 ~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
+|.|... .++|+|.|+|++|+++|+.+|..
T Consensus 71 ~f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 7777543 38999999999999999999964
No 69
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=3.2e-13 Score=125.62 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=68.4
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEe-CCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~-~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~ 97 (876)
|+|+|||. |+|...+.|++|||||+ ++.|.||++.+..... ..++++++.+..+........+.++|.|...+
T Consensus 1 v~k~G~L~--K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEGWLH--KRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEEEEE--eecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 57999666 88888999999999999 7889999987643321 13456666665543322234566778775211
Q ss_pred ---CCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 98 ---~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.-.| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 45699999999999999876
No 70
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.42 E-value=6.7e-13 Score=124.60 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=62.7
Q ss_pred EEeeEeeecCC----CCCCcEEEEEEEeCCe-------eeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-----c-
Q 002819 22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----R- 84 (876)
Q Consensus 22 eG~L~l~KkG~----~~k~WKKRWFVL~~~~-------L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-----~- 84 (876)
+|||. |+|. ..++|++|||||+++. |.||+++.+.. +.|.|+|..+..+.. .
T Consensus 2 eGwL~--K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~~ 70 (108)
T cd01266 2 EGWLK--KSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTAG 70 (108)
T ss_pred ceeee--eCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEccccccccc
Confidence 79666 5555 3569999999999876 59999987665 445566665433211 1
Q ss_pred -cCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 85 -EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 85 -~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
....+.|.+.. ..|+|+|.|+|++|+++||.+|+++
T Consensus 71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 12234566543 3499999999999999999999865
No 71
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=8.9e-13 Score=118.01 Aligned_cols=91 Identities=27% Similarity=0.433 Sum_probs=65.9
Q ss_pred EEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCC
Q 002819 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (876)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~g 100 (876)
++|||+ |++...+.|++|||||+++.|+||+++...... +.+.|.|..+. +.....+.++|.|.. .++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~-------~~~~i~l~~~~-~~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGK-------PRGTILLSGAV-ISEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCCCC-------ceEEEEeceEE-EEECCCCCcEEEEEc--CCC
Confidence 479776 666667899999999999999999998765101 23344444432 222234467777753 346
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 002819 101 RAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 101 Rty~LqAdSeeE~~eWI~AIr~a 123 (876)
++|+|+|+|.+|+.+||.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 72
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.41 E-value=9e-13 Score=118.68 Aligned_cols=92 Identities=21% Similarity=0.451 Sum_probs=63.5
Q ss_pred EEEeeEeeecCCC-CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCC
Q 002819 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (876)
Q Consensus 21 KeG~L~l~KkG~~-~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~ 99 (876)
|+|||++ ++.. .+.|++|||||+++.|+||+++..... .....+.+..+.+..... ...++++|.|....
T Consensus 1 k~G~L~k--k~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~--~~~~~i~l~~~~v~~~~~---~~~~~~~f~i~~~~-- 71 (94)
T cd01250 1 KQGYLYK--RSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDN--AHVKEIDLRRCTVRHNGK---QPDRRFCFEVISPT-- 71 (94)
T ss_pred CcceEEE--ECCCcCCCceEEEEEEeCCeEEEEcCCccccc--ccceEEeccceEEecCcc---ccCCceEEEEEcCC--
Confidence 5898874 4432 778999999999999999999875311 111223333333322111 11367888886433
Q ss_pred CceEEEEeCCHHHHHHHHHHHHH
Q 002819 100 GRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 100 gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
++|+|+|+|.+++.+||.||+.
T Consensus 72 -~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 -KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred -cEEEEECCCHHHHHHHHHHHhc
Confidence 9999999999999999999975
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=1.9e-12 Score=119.78 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=58.6
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeecc----CCceEEEEecCCCCCceEEEEeCC
Q 002819 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLFPDGRDGRAFTLKAET 109 (876)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~----~Kk~~fvIt~~~~~gRty~LqAdS 109 (876)
.++||+|||+|+++.|+||+++... +.|.|+|..+..+.... .+.++|.|... .++|||+|+|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~~----------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~---~r~~yi~a~s 84 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQCK----------KSALIKLAAIKGTEPLSDKSFVNVDIITIVCE---DDTMQLQFEA 84 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCCc----------eeeeEEccceEEEEEcCCcccCCCceEEEEeC---CCeEEEECCC
Confidence 5789999999999999999987643 56667777765543322 23356655433 3899999999
Q ss_pred HHHHHHHHHHHHHH
Q 002819 110 SEDLYEWKTALELA 123 (876)
Q Consensus 110 eeE~~eWI~AIr~a 123 (876)
+.|+++||.||+++
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 74
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.34 E-value=1.1e-11 Score=111.42 Aligned_cols=101 Identities=22% Similarity=0.396 Sum_probs=72.2
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee--eccCCceEEEEecC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~--~~~~Kk~~fvIt~~ 96 (876)
++++|||++. +...+.|++|||||+++.|+||++..... .......+.+.++.+....... ......++|.|...
T Consensus 1 ~~~~G~L~~~--~~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLLKK--SSSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE--ESSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEEEE--CCCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 6899988844 45678899999999999999999988411 1122334455555444322210 12356678888654
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 97 ~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
. +..|+|+|+|++++..|+.+|+.++
T Consensus 78 ~--~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 N--GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp T--SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred C--CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 3 4699999999999999999999986
No 75
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=3e-12 Score=118.31 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=67.0
Q ss_pred EEEeeEeeecCCC-CCCcEEEEEEEeC----CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee--c--cCCceEE
Q 002819 21 KSGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--R--EDKKLLT 91 (876)
Q Consensus 21 KeG~L~l~KkG~~-~k~WKKRWFVL~~----~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~--~--~~Kk~~f 91 (876)
+.|||. |+|+. .|.||+|||+|.+ +.|+||++..+.. +++.|++..+ .|.. . .++++||
T Consensus 1 ~~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~-~V~~v~ds~~~r~~cF 68 (98)
T cd01245 1 KKGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDA-YLYPVHDSLFGRPNCF 68 (98)
T ss_pred CCCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeecccc-EEEEccccccCCCeEE
Confidence 358665 77777 9999999999987 8999999998876 4555666665 3222 1 2667999
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
.+.... .+.+|+++|++ +|+++||.+|+.
T Consensus 69 el~~~~-~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 69 QIVERA-LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEecCC-CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 886432 12689999999 999999999975
No 76
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=1.1e-11 Score=118.86 Aligned_cols=97 Identities=22% Similarity=0.230 Sum_probs=67.7
Q ss_pred EEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee------ccCCceEEEE
Q 002819 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (876)
Q Consensus 20 vKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~------~~~Kk~~fvI 93 (876)
.-.|||.+....++.++|++|||||+|+.|+||+.+.+.. . ..+++.|+|..+..... .-.+++.|.|
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~-----~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-R-----KGPTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-c-----CCceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 4579999866666799999999999999999999777632 1 12556666666544222 2346666666
Q ss_pred ecCCC----------------CCc-eEEEEeCCHHHHHHHHHHHHH
Q 002819 94 FPDGR----------------DGR-AFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 94 t~~~~----------------~gR-ty~LqAdSeeE~~eWI~AIr~ 122 (876)
...-. ..+ -|+|.|+|.+|+++|+.||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 32100 112 267999999999999999975
No 77
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.28 E-value=1.9e-11 Score=113.44 Aligned_cols=85 Identities=27% Similarity=0.398 Sum_probs=58.3
Q ss_pred CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHHH
Q 002819 33 GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSED 112 (876)
Q Consensus 33 ~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE 112 (876)
..+.|++|||||+++.|+||+++........+...+.+.++.+..+. ....++++|.|.. .++++|+|+|+++++
T Consensus 19 ~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~---~~~k~~~~F~l~~--~~~~~~~f~a~s~e~ 93 (104)
T cd01253 19 SNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS---DYTKKKHVFRLRL--PDGAEFLFQAPDEEE 93 (104)
T ss_pred CCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC---CcccCceEEEEEe--cCCCEEEEECCCHHH
Confidence 37789999999999999999988654222222222333222221111 0125567888763 357999999999999
Q ss_pred HHHHHHHHHH
Q 002819 113 LYEWKTALEL 122 (876)
Q Consensus 113 ~~eWI~AIr~ 122 (876)
+..|+.+|+.
T Consensus 94 ~~~Wi~aL~~ 103 (104)
T cd01253 94 MSSWVRALKS 103 (104)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 78
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.5e-11 Score=126.57 Aligned_cols=103 Identities=27% Similarity=0.479 Sum_probs=74.9
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCC-
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG- 97 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~- 97 (876)
-.++|||++. .|.+.++||||||+|+.++||||.--.+..|.+. ++|..+.+..+. ...|++||.+....
T Consensus 260 pdREGWLlKl-gg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGI----IpLeNlsir~Ve----dP~kP~cfEly~ps~ 330 (395)
T KOG0930|consen 260 PDREGWLLKL-GGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGI----IPLENLSIREVE----DPKKPNCFELYIPSN 330 (395)
T ss_pred ccccceeeee-cCCcccchhheeEEeecceeeeeeeccCCCCCcc----eeccccceeecc----CCCCCCeEEEecCCC
Confidence 3689988844 2336899999999999999999998887765441 234444333322 35677899775322
Q ss_pred -----------CCCc-------eEEEEeCCHHHHHHHHHHHHHHHhhCCch
Q 002819 98 -----------RDGR-------AFTLKAETSEDLYEWKTALELALAQAPSA 130 (876)
Q Consensus 98 -----------~~gR-------ty~LqAdSeeE~~eWI~AIr~al~~ap~~ 130 (876)
.+|| +|.++|.+.+|+.+||.+|+.++.+.|--
T Consensus 331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy 381 (395)
T KOG0930|consen 331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFY 381 (395)
T ss_pred CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence 1333 79999999999999999999999865543
No 79
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.19 E-value=3.4e-11 Score=132.59 Aligned_cols=172 Identities=17% Similarity=0.224 Sum_probs=142.8
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC------------------------------------
Q 002819 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK------------------------------------ 222 (876)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~------------------------------------ 222 (876)
..|.++...+.+.+.+|..++||+|.++.....+.++..-+.|+
T Consensus 70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 36889999999999999999999999987766555554332211
Q ss_pred -----ccCCCCCCccchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 002819 223 -----TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297 (876)
Q Consensus 223 -----~~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L 297 (876)
.....++.|.+||+++|.|||+||++|++.++...|..++.........+.++. ++..||.+||.++.||+-|+
T Consensus 150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~-llk~Lp~cNyll~swl~lH~ 228 (514)
T KOG4370|consen 150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQF-LLKILPKCNYLLYSWLNLHK 228 (514)
T ss_pred HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHH-HHHhccccchHHHHHHHHHH
Confidence 001134678899999999999999999999999999999988888888888987 56899999999999999999
Q ss_pred HHHHhccccCCCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCccc
Q 002819 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (876)
Q Consensus 298 ~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~l 377 (876)
..|....-.|||++.||+|+..|++--. +.++..|.-|+..||++.-+
T Consensus 229 d~vi~~e~~~Kln~q~i~i~lspt~q~s--------------------------------~r~l~al~~h~q~lf~~v~l 276 (514)
T KOG4370|consen 229 DKVIEEEYCLKLNKQQIFINLSPTEQES--------------------------------KRGLQALGLHLQTLFEMVRL 276 (514)
T ss_pred HHHHHHHHHhhcchhheeeecchHHHHH--------------------------------HHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999998876532 35677888899999999887
Q ss_pred ccccCC
Q 002819 378 HRCSIS 383 (876)
Q Consensus 378 ~~~s~~ 383 (876)
..|..+
T Consensus 277 ~~~~~p 282 (514)
T KOG4370|consen 277 MVCFSP 282 (514)
T ss_pred eeeecc
Confidence 766544
No 80
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.17 E-value=1.8e-10 Score=109.95 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=67.9
Q ss_pred EEEeeEee-------ecC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcc-e-eeccCCceE
Q 002819 21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-V-VVREDKKLL 90 (876)
Q Consensus 21 KeG~L~l~-------KkG-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~s-v-~~~~~Kk~~ 90 (876)
|+|+|..+ ||. .+.+.|+++||||+++.|++||++....... .. .-.-..|.|..+.. + ....+|++.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~-~~-~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSL-SE-TELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCccccccc-cc-ccccceEEeccceeEeeccccCCCcE
Confidence 68888744 111 1257899999999999999999997532110 00 00012244444332 1 123466677
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|.|.. .+|+.|+|||.+.+||+.||.+|+.+.+
T Consensus 80 F~L~~--~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 80 FRLRT--ADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 77764 5689999999999999999999999875
No 81
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.10 E-value=4e-10 Score=104.95 Aligned_cols=91 Identities=22% Similarity=0.396 Sum_probs=69.4
Q ss_pred ecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEE-ecCCCCCceEEEEe
Q 002819 29 SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDGRDGRAFTLKA 107 (876)
Q Consensus 29 KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI-t~~~~~gRty~LqA 107 (876)
-+...++.||+|||+|+++.|+|||++.+.. +.+.+.+.+.+|.+.....+ ..+++++.+ +|.....++|+|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEEC
Confidence 3455588899999999999999999987653 45566677778877764332 245566655 44344458999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 002819 108 ETSEDLYEWKTALELAL 124 (876)
Q Consensus 108 dSeeE~~eWI~AIr~al 124 (876)
+|++++.+||+|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999875
No 82
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.10 E-value=3.3e-10 Score=107.35 Aligned_cols=98 Identities=33% Similarity=0.537 Sum_probs=49.5
Q ss_pred EEEeeEeeecCCC-CCCcEEEEEEEe-CCeeeEecCCCCCCCCC--C--cceeeeeCcEEeCCCcc-ee-------eccC
Q 002819 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNNSGS-VV-------VRED 86 (876)
Q Consensus 21 KeG~L~l~KkG~~-~k~WKKRWFVL~-~~~L~YYKd~~~~~p~~--~--~ev~i~Lg~I~L~~~~s-v~-------~~~~ 86 (876)
|+|||+ |++.. .+.|++|||||. ++.|.|||.+.+..... + ....+..+.+....... .. ....
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689777 77766 899999999999 99999999933321000 0 00000001111100000 00 0011
Q ss_pred CceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 87 Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
-...+.|.+. .++|+|.|+|.+|+.+|+.||++|
T Consensus 79 ~~~~~~i~T~---~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP---TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S---S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC---CcEEEEEECCHHHHHHHHHHHHhC
Confidence 1123333322 389999999999999999999875
No 83
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.07 E-value=1.8e-10 Score=136.93 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=128.9
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccc-cCCCHHHHHHHHHHhhcCCccC--CCCCCccchhhhhHhhhccCCCC-CCChhh
Q 002819 179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPASC 254 (876)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~tEGIFR-isGs~~~I~~L~~~ld~G~~~~--~~~~D~h~VAslLK~fLReLPeP-LLp~~l 254 (876)
.||.++..|+.+++.+|+..+|||| +++....+..++.++..|.... ..+.+... |.++|.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 4999999999999999999999999 8899999999999999884222 22334445 99999999999999 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCC
Q 002819 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (876)
Q Consensus 255 y~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~ 326 (876)
|..|+.+....+.-+++..++.+ +..+|..+..++.+|+.|+...++++..|.|++.|+|+||||.++-.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~-L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKL-LKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhh-hhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 99999998887777777888874 459999999999999999999999999999999999999999997654
No 84
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.05 E-value=9.3e-10 Score=105.67 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=57.1
Q ss_pred CcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec--------------cCCceEEEEecCCCCCc
Q 002819 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (876)
Q Consensus 36 ~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~--------------~~Kk~~fvIt~~~~~gR 101 (876)
.|++|||||+++.|.||+++.+.. +++.|.++....+... ..+++.|.|... .|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~---~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNS---NR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcC---Cc
Confidence 699999999999999999988764 3444444443332211 245667777543 49
Q ss_pred eEEEEeCCHHHHHHHHHHHHHH
Q 002819 102 AFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 102 ty~LqAdSeeE~~eWI~AIr~a 123 (876)
+|.|.|+|+.++.+|+++|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 85
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.02 E-value=2.2e-09 Score=99.75 Aligned_cols=95 Identities=14% Similarity=0.282 Sum_probs=67.8
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcc----eeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE----VNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e----v~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
.+|+|||. |.+...+.|+.|||.|-++.|.|++..... .+.. -.+.+.++.+.... ....++.|.|.
T Consensus 2 ~ikeG~L~--K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~---~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~ 72 (101)
T cd01219 2 LLKEGSVL--KISSTTEKTEERYLFLFNDLLLYCVPRKMI---GGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVS 72 (101)
T ss_pred cccceEEE--EEecCCCCceeEEEEEeCCEEEEEEccccc---CCCcEEEEEEEecccEEEEeCC----CCCcCceEEEe
Confidence 58999655 777777899999999999999999964321 1111 11334444333211 23456788886
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
... ++|+|+|+|++|+.+||.||+.++.
T Consensus 73 ~~~---rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 73 GKQ---RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred cCC---cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 443 9999999999999999999999874
No 86
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.96 E-value=6.5e-09 Score=91.65 Aligned_cols=96 Identities=33% Similarity=0.526 Sum_probs=67.3
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec-c----CCceEEEE
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-E----DKKLLTVL 93 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~-~----~Kk~~fvI 93 (876)
++++|||+....+ ....|++|||+|.++.|.||++...... .. ....|.|..+ .+... . ...++|.|
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~-----~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l 72 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YK-----PKGSIDLSGI-TVREAPDPDSAKKPHCFEI 72 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CC-----CceEEECCcC-EEEeCCCCccCCCceEEEE
Confidence 3689988855443 4678999999999999999998876421 11 2223444443 21111 1 35678888
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
.... +..|+|+|+|..++..|+.+|+.++
T Consensus 73 ~~~~--~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 73 KTAD--RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EecC--CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 6543 3599999999999999999999875
No 87
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.96 E-value=3.8e-09 Score=95.86 Aligned_cols=86 Identities=27% Similarity=0.488 Sum_probs=60.9
Q ss_pred EeeEeeecCCCCCCcEEEEEEE--eCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCC
Q 002819 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (876)
Q Consensus 23 G~L~l~KkG~~~k~WKKRWFVL--~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~g 100 (876)
|||.+ |++...+.|++||||| ..+.|.||+++.+.. .-|.|+|..+ .+.. ..+...+.|.. ..
T Consensus 1 G~llK-krr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a-~is~-~~~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLK-KRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLA-VISA-NKKSRRIDIDS---GD 65 (89)
T ss_pred Cccee-eccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccce-EEEe-cCCCCEEEEEc---CC
Confidence 66763 3344588899999999 889999999876652 2344555543 1222 23344455533 35
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 002819 101 RAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 101 Rty~LqAdSeeE~~eWI~AIr~a 123 (876)
.+|.|.|.++++.+.|+.||+.+
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999875
No 88
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=98.92 E-value=2.9e-09 Score=101.89 Aligned_cols=103 Identities=24% Similarity=0.394 Sum_probs=59.7
Q ss_pred EEEEeeEee-------ec-CCCCCCcEEEEEEEeCCeeeEecCCCCCCCCC-----CcceeeeeCcEEeCCCcceee--c
Q 002819 20 FKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVV--R 84 (876)
Q Consensus 20 vKeG~L~l~-------Kk-G~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~-----~~ev~i~Lg~I~L~~~~sv~~--~ 84 (876)
.|+|||+.+ |+ +...+.|+..|+||+++.|++||+........ ..+..-+...|.|..+..... .
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 479988854 11 12467899999999999999999954221111 011111233355554433222 2
Q ss_pred cCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 85 ~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
.+|+++|.+.. .+|..|+|||.|.++|.+||++|..+.
T Consensus 81 ~Kr~~VFrL~~--~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLRT--ADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEEe--CCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 45778888874 468999999999999999999998763
No 89
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.79 E-value=3.1e-08 Score=90.31 Aligned_cols=99 Identities=32% Similarity=0.456 Sum_probs=73.2
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEec-CC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~-~~ 97 (876)
|++.|||-+..-|.....=|+|||||+..+|+|||+..+..+++ .++|.++.+..+..- --.+++||.++- ..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~ky----ilpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKY----MLPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccc----eeeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 68899998876665555569999999999999999998886443 346666666554321 135678998763 22
Q ss_pred ----CCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 98 ----RDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 98 ----~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.+.++.-|.|+|+++++.|...+-.|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 24568999999999999999877544
No 90
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.74 E-value=5.6e-08 Score=90.44 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=61.6
Q ss_pred EEEeeEeeecCCCCCCcEEEEEEEeCC--eeeE--ecCC--CCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLVF--FKND--PSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~--~L~Y--YKd~--~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
|+||||++.++.....|.++||...+. .+.+ +... ++....-.....+.+..|.+... ...+|+|||.|+
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~----~~~dRRFCFei~ 76 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKT----ESIDKRFCFDVE 76 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeecccccc----CCccceeeEeee
Confidence 689999998877777899999998874 3211 2211 11110001112223333333332 336899999987
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHH
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALE 121 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr 121 (876)
..... .+++|||+++.++..||.||.
T Consensus 77 ~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 77 VEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred ecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 65433 479999999999999999985
No 91
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.72 E-value=4.4e-08 Score=85.55 Aligned_cols=93 Identities=30% Similarity=0.522 Sum_probs=62.2
Q ss_pred EEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeecc--CCceEEEEecCCC
Q 002819 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPDGR 98 (876)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~--~Kk~~fvIt~~~~ 98 (876)
++|||+....+. ...|++|||+|.++.|.+|+...... ... ..+.|+|....-..... ...++|.|...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence 468777443332 47899999999999999999876531 011 22234444311111111 24678888753
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHH
Q 002819 99 DGRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 99 ~gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
+++.|+|+|+|..++..|+.+|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 248999999999999999999975
No 92
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.71 E-value=1e-07 Score=83.92 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=64.2
Q ss_pred EEeeEeeecCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCC
Q 002819 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (876)
Q Consensus 22 eG~L~l~KkG~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~ 99 (876)
+|||.+...+. ....|++|||+|.+..|.||+......... ..+++..+.+..... .....++|.+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~---~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPD---GSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCC---CCCCCceEEEECCCCC
Confidence 58666444332 257899999999999999999987664221 123333333222111 1135678877643213
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 002819 100 GRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 100 gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.+.|+|+|+|.+++..|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 689999999999999999999853
No 93
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.64 E-value=3.7e-08 Score=90.55 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=67.7
Q ss_pred EEEEeeEeeecCC-CCCCcEEEEEEEeCCe-----eeEecCCCCCCCCCCcceeeeeCcEEeCCCccee-------eccC
Q 002819 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-------VRED 86 (876)
Q Consensus 20 vKeG~L~l~KkG~-~~k~WKKRWFVL~~~~-----L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-------~~~~ 86 (876)
.++|||| +.|+ .++.||||||||.+-+ +.-|+.++. .+...+.|.|..++-+.... .-..
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence 4899887 6666 6999999999999853 334444332 34455678887777654432 1124
Q ss_pred CceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 87 Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.+++|-..- .|-+..|..+++.|+.-||+||=.|..+
T Consensus 76 g~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgq 112 (117)
T cd01234 76 GRHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQ 112 (117)
T ss_pred chhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence 555554432 3578999999999999999999888654
No 94
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.60 E-value=5.1e-08 Score=105.75 Aligned_cols=107 Identities=18% Similarity=0.300 Sum_probs=78.1
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeC-CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEE
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~-~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI 93 (876)
....|+|+|||+ |+|...++|+.|||+|.. +.|.-|+.++....+. ..+|..+.+..|........+++.|+|
T Consensus 11 ~~~~vvkEgWlh--KrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~----p~pLNnF~v~~cq~m~~erPrPntFii 84 (516)
T KOG0690|consen 11 SQEDVVKEGWLH--KRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPT----PEPLNNFMVRDCQTMKTERPRPNTFII 84 (516)
T ss_pred chhhhHHhhhHh--hcchhhhcccceEEEEeeCCceEeeccCCccCCCC----cccccchhhhhhhhhhccCCCCceEEE
Confidence 445789999666 999999999999999975 7888898876543211 135555556555554455677788877
Q ss_pred ec-CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 94 FP-DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 94 t~-~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
.. ..+.--.-+|.+++++++++|+.||+.+....
T Consensus 85 RcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 85 RCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 42 33333567899999999999999999987643
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.53 E-value=5.6e-08 Score=112.69 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=141.4
Q ss_pred CCCCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHH----HHH-HHhhcCCccCCCCCCc
Q 002819 157 DKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVD----RRV-QEYEQGKTEFSADEDA 231 (876)
Q Consensus 157 ~k~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~----~L~-~~ld~G~~~~~~~~D~ 231 (876)
........-||+||...|.+.+.+|..+......|...+..+++|||..-...-+. ... +....|..+..+...+
T Consensus 408 ~e~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv 487 (741)
T KOG4724|consen 408 LESELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPV 487 (741)
T ss_pred hhhhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCc
Confidence 34555677899999999999999999999888999999999999999854332222 222 2233366666667799
Q ss_pred cchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHHhhCChhHHHHHHHHHHHHHHHHhcc
Q 002819 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHA 304 (876)
Q Consensus 232 h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~-------lLl~~LP~~N~~lL~~Ll~~L~~Va~~s 304 (876)
|.++.++|.|+|.+|..++..+.+.+++++.....++++.++|+. ......|..+..+....+.-.+.+..++
T Consensus 488 ~taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~ns 567 (741)
T KOG4724|consen 488 HTAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENS 567 (741)
T ss_pred hHHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccc
Confidence 999999999999999999999999999999999998999999986 1346788898888888888888899999
Q ss_pred ccCCCCcchhhHhhcccccCCC
Q 002819 305 HENRMTPSAVAACMAPLLLRPL 326 (876)
Q Consensus 305 ~~NKMta~NLAi~FaP~Llrp~ 326 (876)
..+.|+..|++.|..|+++...
T Consensus 568 e~~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 568 EETSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccccCCCCCccccchh
Confidence 9999999999999999998744
No 96
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.49 E-value=1.4e-06 Score=82.73 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=75.0
Q ss_pred EEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcc--eeeee--CcEEeCCCcc--ee--eccCCceEE
Q 002819 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE--VNLTL--GGIDLNNSGS--VV--VREDKKLLT 91 (876)
Q Consensus 20 vKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e--v~i~L--g~I~L~~~~s--v~--~~~~Kk~~f 91 (876)
..+|||.+.+.++..+.|+++|+||.+..|++|..+.+...+...+ ..+++ +.+.+..++. ++ ...+-+++|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 4689999888877778999999999999999999887665443333 33455 2355554433 21 123455677
Q ss_pred EEec----CCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 92 vIt~----~~~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.|+. ....+.+.+|-|+++.|...|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 7754 2234679999999999999999999875
No 97
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.47 E-value=1.5e-06 Score=80.92 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=56.8
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~ 98 (876)
.+|+|+|.+ .+. ...|.|+|| |-++.|.|+........+-...-.+++.++.+..... ....+++|.|...
T Consensus 2 ~ikEG~L~K--~~~-k~~~~R~~F-LFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLLK--LSK-KGLQQRMFF-LFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEEE--EeC-CCCceEEEE-EccceEEEEEeecCCCceEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 589997774 332 235665555 5555555554322110000001123444444332111 1245688988743
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 99 ~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.+.|.|+|.|++|+.+|+.+|+.++.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999874
No 98
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.41 E-value=1e-07 Score=113.49 Aligned_cols=93 Identities=27% Similarity=0.498 Sum_probs=72.8
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeC--CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee----ccCCceEE
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKLLT 91 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~----~~~Kk~~f 91 (876)
+-+.+|||| |+|...|.||.|||||.. ..|+||.+-.+++|+ |.|+|..+.++.. ..+.|-+|
T Consensus 1633 Nr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pk---------G~IdLaevesv~~~~~k~vdekgff 1701 (1732)
T KOG1090|consen 1633 NRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPK---------GCIDLAEVESVALIGPKTVDEKGFF 1701 (1732)
T ss_pred ccCcccchh--hcchhhcccccceeEecCCccceeeeccccccccc---------chhhhhhhhhhcccCccccCcccee
Confidence 345699888 899999999999999986 599999999888744 4456655544433 13455567
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
.+... .|+|.|+|.+...+++|+..|+.++
T Consensus 1702 dlktt---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1702 DLKTT---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeehh---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 66543 4999999999999999999999876
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.35 E-value=1.3e-06 Score=81.86 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=63.5
Q ss_pred EEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEe--CCCcceeeccCCceEEEEecCCC
Q 002819 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL--NNSGSVVVREDKKLLTVLFPDGR 98 (876)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L--~~~~sv~~~~~Kk~~fvIt~~~~ 98 (876)
.+|+||++.-| .++|||+||+|++.-|+|+-..+...+..-. ....+.+.+| .......-+....++|.+.+...
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~-cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLA-CLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHHHHH-HHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 47999987666 5899999999999999988766554322100 0011111111 10001111234457898865332
Q ss_pred ----CCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 99 ----DGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 99 ----~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
..-..+|+|+++..+..||.|||-+.
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 22368999999999999999999764
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.26 E-value=1e-05 Score=75.98 Aligned_cols=103 Identities=13% Similarity=0.282 Sum_probs=71.1
Q ss_pred EEEeeEeeecCCC--CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCc-EEeCCCcc--ee--eccCCceEEEE
Q 002819 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGS--VV--VREDKKLLTVL 93 (876)
Q Consensus 21 KeG~L~l~KkG~~--~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~-I~L~~~~s--v~--~~~~Kk~~fvI 93 (876)
.+|||-+.+.++. .+.|++.|+||.+..|++|..+.+..... +...++++. +.+..++. +. ...+-+++|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 4898877777554 46899999999999999999887763222 222333322 33333333 11 12345567877
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+.. ..+++.+|-|+++.|.+.|+.+|.+.+.
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 653 3469999999999999999999987653
No 101
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.18 E-value=2.3e-06 Score=102.54 Aligned_cols=104 Identities=26% Similarity=0.431 Sum_probs=77.5
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeecc------CCce
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKL 89 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~------~Kk~ 89 (876)
...|.-.|||++-.-+.++..|+||||+|.++.+.|+|-+.+...+ .+++.|+|+.|++-.... .+.+
T Consensus 987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK------~Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRK------VPIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred ccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhccc------CcceeeehhhhhccccccchhhhccCCc
Confidence 3456778999988888888899999999999999999988887533 378889999987732221 2333
Q ss_pred EEEEe---c--CC-----CCCc-eEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 90 LTVLF---P--DG-----RDGR-AFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 90 ~fvIt---~--~~-----~~gR-ty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
-|.|. | ++ -..| ...|.|+|.++++.|+.+|..++.
T Consensus 1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 34433 1 11 0123 678999999999999999999985
No 102
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.06 E-value=7.4e-06 Score=96.14 Aligned_cols=113 Identities=27% Similarity=0.358 Sum_probs=76.6
Q ss_pred ceEEEEeeEeeecCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec----cCCceE
Q 002819 18 TVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----EDKKLL 90 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~----~~Kk~~ 90 (876)
.|.|+|.+....+|. +.+++|||||-|++..|.|.|++... +++.|.|.++..|..- .+.+++
T Consensus 564 ~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~knv 633 (800)
T KOG2059|consen 564 VVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMKNV 633 (800)
T ss_pred ceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCCce
Confidence 355666444333332 24678999999999999999998766 5667777776664322 244455
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCchhhhcCccccccCCC
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~a~~~g~~~if~~~~ 144 (876)
|.|+..+ |+.||||.+..|.++|+++|+++...++.. ...-+.+.|+.+.
T Consensus 634 ~qVV~~d---rtly~Q~~n~vEandWldaL~kvs~~N~~r-Las~HPgaF~s~~ 683 (800)
T KOG2059|consen 634 FQVVHTD---RTLYVQAKNCVEANDWLDALRKVSCCNQNR-LASYHPGAFRSDS 683 (800)
T ss_pred EEEEecC---cceeEecCCchHHHHHHHHHHHHhccCcch-hhhcCCcccccCc
Confidence 5444333 899999999999999999999997643221 1123456666653
No 103
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.05 E-value=1.7e-05 Score=90.78 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=117.2
Q ss_pred cHHHHHHHHHHHhcCCcccCcc---ccCCCHHHHHHHHHHh-hcCCcc----------CCCCCCccchhhhhHhhhccCC
Q 002819 181 PSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLRELP 246 (876)
Q Consensus 181 P~iL~~~i~~Le~~Gl~tEGIF---RisGs~~~I~~L~~~l-d~G~~~----------~~~~~D~h~VAslLK~fLReLP 246 (876)
=.+|..|...|..+|+++++|| |-.-+...++.++..| ..+... .....++|+++++||-.+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478889999999999999997 6667888888877754 333211 1134699999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCC
Q 002819 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (876)
Q Consensus 247 ePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP-~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp 325 (876)
..+|+.+.|..|...-+..+ .-..++..+|-..|| +.|..++..++.+|..|+.|+..|+|+..-|+-.+|+-+|-.
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred CCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999987644332 234556665666675 566789999999999999999999999999999999999987
Q ss_pred CCC
Q 002819 326 LLA 328 (876)
Q Consensus 326 ~~~ 328 (876)
...
T Consensus 167 ~~~ 169 (420)
T PF08101_consen 167 PDF 169 (420)
T ss_pred CCc
Confidence 643
No 104
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.04 E-value=3.4e-05 Score=72.43 Aligned_cols=91 Identities=24% Similarity=0.289 Sum_probs=59.5
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCC-eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~-~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
...++++|+|. |+++.. +++|||+|+++ .|+|+...... .-|.|.++....+.... .+.+++.+
T Consensus 10 ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~~----------~KGeI~~~~~l~v~~k~-~~~F~I~t 74 (104)
T PF14593_consen 10 GELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKMV----------LKGEIPWSKELSVEVKS-FKTFFIHT 74 (104)
T ss_dssp T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTTE----------EEEEE--STT-EEEECS-SSEEEEEE
T ss_pred CCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCCe----------ECcEEecCCceEEEEcc-CCEEEEEC
Confidence 67899999776 433323 89999999998 66666655433 34668888766654433 33456666
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
| +|+|+|... ...+..|+++|+.+...
T Consensus 75 p----~RtY~l~d~-~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P----KRTYYLEDP-EGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T----TEEEEEE-T-TS-HHHHHHHHHHHHHH
T ss_pred C----CcEEEEECC-CCCHHHHHHHHHHHHHH
Confidence 5 499999885 55688899999998753
No 105
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.65 E-value=0.0005 Score=64.68 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=63.8
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCC
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~ 97 (876)
..+++|.|.+.- ++.-+.|||.|-++.|+|=+-..... +-...-.+++.++.+.+... ....++.|.|...
T Consensus 3 ~li~eG~L~K~~----rk~~~~R~ffLFnD~LvY~~~~~~~~-~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLTKMC----RKKPKQRQFFLFNDILVYGNIVISKK-KYNKQHILPLEGVQVESIED---DGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEEEee----cCCCceEEEEEecCEEEEEEeecCCc-eeeEeeEEEccceEEEecCC---cccccceEEEecC-
Confidence 468999776332 44568899999999999954211100 00111234566655543221 1234566766543
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 98 ~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.+.|.++|+|++|..+|+.+|..++..
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999863
No 106
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.65 E-value=0.0001 Score=84.41 Aligned_cols=104 Identities=23% Similarity=0.283 Sum_probs=63.9
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCc--EEeCCCcceeeccCCceEEEEecC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG--IDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~--I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
.-++|+||++..| +|.|||.||||+...|||+...+.+.+....-+. .+.+ |.........-+....++|-|.+.
T Consensus 317 pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~-~~~~snVYt~i~~rKkyksPTd~~f~~K~~ 393 (622)
T KOG3751|consen 317 PEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLA-DLHSSNVYTGIGGRKKYKSPTDYGFCIKPN 393 (622)
T ss_pred ccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhHHHH-hcccCceEEeecchhccCCCCCceEEeeec
Confidence 4678999976655 6899999999999999999877666543311110 1111 111100000001122246666553
Q ss_pred CC-CC--ceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 97 GR-DG--RAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 97 ~~-~g--Rty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.. ++ -.-+|||+++..+..|+.|||-+-.
T Consensus 394 ~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 394 KLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred cccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 22 22 2568999999999999999997753
No 107
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.53 E-value=0.00038 Score=83.50 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=72.5
Q ss_pred CceEEEEeeEeeecC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccC----CceEE
Q 002819 17 NTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLT 91 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~----Kk~~f 91 (876)
..+..+||||.-... .+...-++|||||.+..|.|||.++... .++++...|...+-|..... .+.+|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 457899999966543 3345569999999999999999865442 23555555555444433322 22355
Q ss_pred EEecC--CCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 92 VLFPD--GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 92 vIt~~--~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
++... ....+...|.|-|.+|+..|+.||+.++.+.
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 55442 2345689999999999999999999999864
No 108
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.52 E-value=0.00025 Score=82.96 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=62.7
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecC-CCCCCCCCCcceeeeeCcEEeCCCcceee--ccCCceEEE
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKN-DPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd-~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~--~~~Kk~~fv 92 (876)
...+.+.|||+ +.+... .|++|||.+.++.+..... .+........ .+...++..+..+.. ...+.++|.
T Consensus 374 ~sDv~~~G~l~--k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 374 TSDVTHGGYLY--KYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV 446 (478)
T ss_pred cCCcccceEEe--ccCCCc-chhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence 45688999777 545444 4999999999876655432 2222111101 111122233222211 124567888
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+.. +.++.++|.|++++++++||.+|+.++.
T Consensus 447 i~~--~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LWF--NNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEe--cCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 743 4578999999999999999999999874
No 109
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=4.2e-05 Score=87.80 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=68.3
Q ss_pred CCCCceEEEEeeEee-------ec-CCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCc-EEeCCCcc--ee
Q 002819 14 GASNTVFKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGS--VV 82 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~-------Kk-G~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~-I~L~~~~s--v~ 82 (876)
.+...+.|.|+|-.+ || -.+++.||..|.||+|-.||+-|++-........ -.|.. |.|..+-. ..
T Consensus 501 dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse---~~lknavsvHHALAt~At 577 (774)
T KOG0932|consen 501 DPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSE---SDLKNAVSVHHALATPAT 577 (774)
T ss_pred CCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhh---hhhhhhhhhhhhhcCCCc
Confidence 556678899977633 11 1236779999999999999999976433210000 01111 22222111 11
Q ss_pred eccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 83 ~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...+|.+.|.+. ..+.|+|+|||.+.++|+.||..|.-|.+
T Consensus 578 dY~KKp~Vf~lr--tAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 578 DYSKKPHVFKLR--TADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred ccccCCceEEEE--eccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 224555566553 45689999999999999999999998764
No 110
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.40 E-value=0.00047 Score=65.34 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=60.3
Q ss_pred EEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-------ccCCceEEE
Q 002819 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKLLTV 92 (876)
Q Consensus 20 vKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-------~~~Kk~~fv 92 (876)
+|+||+- --...-+.|||+|++|+...|.+|+++.... ..+.|.|..+..|.. .....+||.
T Consensus 1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4799765 2222236799999999999999999988765 333444444333321 234668998
Q ss_pred EecCCCCCceEEEEeCC--------------------HHHHHHHHHHHHHH
Q 002819 93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA 123 (876)
Q Consensus 93 It~~~~~gRty~LqAdS--------------------eeE~~eWI~AIr~a 123 (876)
|... ..+|+...+. ...++.|-.||+.|
T Consensus 70 i~T~---~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRTT---TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEec---CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 8754 3899997752 34568899999864
No 111
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.38 E-value=0.0013 Score=62.80 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=66.6
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC-C--Ccce----eeeeCcEEeCCCcceeeccCCceE
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ-R--GGEV----NLTLGGIDLNNSGSVVVREDKKLL 90 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~-~--~~ev----~i~Lg~I~L~~~~sv~~~~~Kk~~ 90 (876)
..+++|-|- +-+...+.++.|+|.|-++.|+|=|........ | ++.. .+++..+.|.+... ...-++.
T Consensus 3 elI~EG~L~--ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kna 77 (112)
T cd01261 3 EFIMEGTLT--RVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNA 77 (112)
T ss_pred cccccCcEE--EEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCce
Confidence 468899554 444445678999999999999998865442111 1 1111 13444455543221 1223567
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|.|... +++.|.|+|.|+++..+||++|..++.
T Consensus 78 F~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 78 FEIILK--DGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 877643 257899999999999999999998875
No 112
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.26 E-value=0.00027 Score=87.00 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=72.2
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
..+...|+||++. +...+.|.||||-..++.+.|+..-..... .+...+..|.+..+.. ..++++||.|+..
T Consensus 272 ~~~~~~~~l~~k~-~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS~ 343 (785)
T KOG0521|consen 272 LGYRMEGYLRKKA-SNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIISP 343 (785)
T ss_pred chhhhhhhhhhhc-ccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEecC
Confidence 4456667666322 335889999999999999999887665521 2333455555554332 2378999988753
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 97 ~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
.++|.|||+++.+...||.+|++.+..+
T Consensus 344 ---tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 344 ---TKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred ---CcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999998643
No 113
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.07 E-value=0.0018 Score=61.30 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=62.4
Q ss_pred EEeeEeeecC--CCCCCcEEEEEEEeCCeeeEecCCCCCCCC-CCcceeeeeC-----cEEeCCCcceeeccCCceEEEE
Q 002819 22 SGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQ-RGGEVNLTLG-----GIDLNNSGSVVVREDKKLLTVL 93 (876)
Q Consensus 22 eG~L~l~KkG--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~-~~~ev~i~Lg-----~I~L~~~~sv~~~~~Kk~~fvI 93 (876)
.|||.-+-.| ...+.|+.+|++|++..|++|+..+..... ..+..+.+|. .+........ ..++.+||.+
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~--~~~~~~~F~i 79 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL--NDQRDNCFLI 79 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc--CCCCceEEEE
Confidence 5865522222 246899999999999999999988764310 0112222222 2222211111 2356689988
Q ss_pred ecCCCCC-ceEEEEeCCHHHHHHHHHHHHH
Q 002819 94 FPDGRDG-RAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 94 t~~~~~g-Rty~LqAdSeeE~~eWI~AIr~ 122 (876)
... .+ ..++|..++..|+..|..||..
T Consensus 80 rtg--~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 80 RTG--TQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred EcC--CceeeEEEEecCHHHHHHHHHHHhc
Confidence 654 35 8999999999999999999863
No 114
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.61 E-value=0.02 Score=53.37 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=60.4
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
+..+++|.|...+. =+.|++-|-...|.|-|...+.. .-.-.+.+..+.|.... ..-.++|.|...
T Consensus 2 geLlleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~~-----~~d~~~F~v~~~ 67 (97)
T cd01222 2 GDLLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEHL-----PGEPLCFRVIPF 67 (97)
T ss_pred CceeeeceEEeecC------CCceEEEEecccEEEEEecCCee---EEEEEEEecceEEecCC-----CCCCcEEEEEec
Confidence 34678897753332 24588889899999888644321 00011223333333211 123688988765
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 97 ~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
....+.|.|+|.|.++...|+++|+.++
T Consensus 68 ~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 68 DDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 4445799999999999999999999886
No 115
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.49 E-value=0.0036 Score=58.76 Aligned_cols=94 Identities=19% Similarity=0.273 Sum_probs=62.8
Q ss_pred ceEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee---eccCCceEEEE
Q 002819 18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~---~~~~Kk~~fvI 93 (876)
.++..||+. |-|+ ....|++|||-|-++.|-+|....... .++ |.......|. ..-+...|-++
T Consensus 2 DcIvhGyi~--KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~eL------i~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHGYIK--KLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PEL------ITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEeeehh--hhCCHHHHHHHHHHheeCcceeeecccccccC----CcE------EEeehhhhcchhheeeccCceEEE
Confidence 578899554 6554 467799999999999999986544321 111 2222222221 11133345555
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
... ++..|+|.++++.++.+|..-|+.+..
T Consensus 70 k~k--~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 70 KIR--DEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred EEc--CCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 554 378899999999999999999998865
No 116
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.41 E-value=0.00087 Score=77.81 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=69.3
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEec
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~ 95 (876)
+...-..||||.-.+. .|+.||||||||-.-+-|-|--+.-...+..+...+.|.|..++.......-.+.+.+|--.
T Consensus 461 p~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnav- 538 (1218)
T KOG3543|consen 461 PPNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAV- 538 (1218)
T ss_pred CCccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHh-
Confidence 3445678999965443 38999999999987544443333222222233445677887776543322223444444322
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 96 ~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
..|-+..|..+++.++.-|++|+-.+..++
T Consensus 539 --kegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 539 --KEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred --ccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 235789999999999999999999998764
No 117
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.38 E-value=0.049 Score=52.70 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=54.9
Q ss_pred eeEeeecCC---CCCCcEEEEEEEeC--CeeeEecCCCCCCCCC-CcceeeeeCcEEeCCCcceeecc----CCceEEEE
Q 002819 24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVL 93 (876)
Q Consensus 24 ~L~l~KkG~---~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~-~~ev~i~Lg~I~L~~~~sv~~~~----~Kk~~fvI 93 (876)
|||+-.+++ .....++|||.|+. .+|+++..++...... +..-.+.+..+.--......+.. +..++++|
T Consensus 14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i 93 (123)
T PF12814_consen 14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIII 93 (123)
T ss_pred EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEE
Confidence 666432222 24578999999998 4666666543322111 11111233332211111111111 12334554
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
. ..+|+.-|.|++.++.+-|+.+|+..+.
T Consensus 94 ~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 94 V---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred E---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4 3459999999999999999999998764
No 118
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.33 E-value=0.0023 Score=75.42 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=64.4
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
...-|.| |..+-+...+.|+|||||++.+.+.||+.+.+........ +++...+... .......|-+...
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~-------~d~~s~~~~~-~~~~s~~fqli~~ 316 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASK-------IDIRSVTKLE-QQGAAYAFQLITS 316 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCc-------ccccccceee-ccchhHHhhhhhh
Confidence 5678889 5556667788999999999999999999887765333222 2333222111 1122222322222
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 97 ~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...|+|.++++--..+|+..|+.++.
T Consensus 317 ---t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 ---TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ---ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 36899999999999999999988875
No 119
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.26 E-value=0.013 Score=69.12 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=33.2
Q ss_pred cCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 85 ~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...++.|.+.. .+|+.|.|+|.+.++++.||.+|+.++.
T Consensus 452 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 452 SNAAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 34677787765 4589999999999999999999999975
No 120
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.26 E-value=0.0022 Score=80.83 Aligned_cols=161 Identities=16% Similarity=0.235 Sum_probs=123.2
Q ss_pred ccccchHHH---hhhcCCCcHHHHH-HHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc---cCC----CCCCccc
Q 002819 165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFS----ADEDAHV 233 (876)
Q Consensus 165 VFGvpL~~l---l~~~~~VP~iL~~-~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~---~~~----~~~D~h~ 233 (876)
++|+++..+ ..-....|.++.+ +.......|....|+||.++....+...+..++.... .+. ...++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 788888665 2223457888888 7777778899999999999998888888888876431 111 1235566
Q ss_pred hhhhhHhhhccC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHHh----hCCh
Q 002819 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (876)
Q Consensus 234 VAslLK~fLReL--PePLLp~~ly~~~l----------------~~~~~~~~eeri-------~~lk~lLl~----~LP~ 284 (876)
+.+.++.|+|.+ |.+......|..++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 777999999999 99988888888777 333334445555 56665 456 8999
Q ss_pred hHHHHHHHHHHHHHHHHhccccC-CCCc-chhhHhhcc----cccCCC
Q 002819 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (876)
Q Consensus 285 ~N~~lL~~Ll~~L~~Va~~s~~N-KMta-~NLAi~FaP----~Llrp~ 326 (876)
....+|.++..++.+|.....+| -|+. .||..+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999988888 8888 999999999 555443
No 121
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.22 E-value=0.022 Score=52.07 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=55.5
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCC-CcceeeccCCceEEEEecCC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPDG 97 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~-~~sv~~~~~Kk~~fvIt~~~ 97 (876)
|++.|.++ |+.+ . .+++|=++|+..--.||-|..... .-|.|.++. ...+.... .+.+++.+|
T Consensus 1 Il~~g~v~--Kr~g-l-f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~~-~~~F~I~Tp-- 64 (89)
T cd01262 1 ILKIGAVK--KRKG-L-FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVKN-SSHFFVHTP-- 64 (89)
T ss_pred Cceeeeee--ehhc-c-ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEec-CccEEEECC--
Confidence 46788555 4433 2 579999999987544555444331 345577776 33333332 344556565
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 98 ~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
+|+|+|. |-...+..|+.+|..+.
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 4999995 55688999999998763
No 122
>PLN02866 phospholipase D
Probab=96.18 E-value=0.031 Score=70.02 Aligned_cols=88 Identities=18% Similarity=0.325 Sum_probs=55.2
Q ss_pred CCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCc-EEeCCCcceee------ccCCceEEEEecCCCCCceEEEEe
Q 002819 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGSVVV------REDKKLLTVLFPDGRDGRAFTLKA 107 (876)
Q Consensus 35 k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~-I~L~~~~sv~~------~~~Kk~~fvIt~~~~~gRty~LqA 107 (876)
..|.||||||+.+.|.|.++..+..+. ..+.++..- +.......+.. ...-++.|.|+.. .|.+.|.|
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~--~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~~ 290 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPL--DIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCG---NRSIRLRT 290 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCcee--EEEEEecccccccCCCcceeecccccccCCCcceEEEecC---ceEEEEEE
Confidence 469999999999999999877665411 001111000 00000011111 1123456767643 49999999
Q ss_pred CCHHHHHHHHHHHHHHHhhC
Q 002819 108 ETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 108 dSeeE~~eWI~AIr~al~~a 127 (876)
.+...+..|+.+|+.+..+.
T Consensus 291 ~s~~~~~~w~~ai~~~~~~~ 310 (1068)
T PLN02866 291 KSSAKVKDWVAAINDAGLRP 310 (1068)
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999997543
No 123
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.10 E-value=0.0021 Score=57.66 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=58.2
Q ss_pred EEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCC---------CcceeeccCCceEEE
Q 002819 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN---------SGSVVVREDKKLLTV 92 (876)
Q Consensus 22 eG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~---------~~sv~~~~~Kk~~fv 92 (876)
+||||..++|. -+|||.+|++..|.+|.++.... ++.+.|.. ....... -.-..|-
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~----------L~sF~L~~s~~s~Pm~~~~~A~~N-~Gi~A~G 65 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQY----------LCSFQLSSSVVSHPMVNFSQAVPN-LGINAFG 65 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCce----------eeeeehhhhhhhcccccccccCCC-CCeeEEE
Confidence 69999888775 57899999999999999875542 22222222 1110000 0112333
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
|...+.+++..-+-|++.+.++.|++++.+-
T Consensus 66 ~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 66 FLMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred EEEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 3334567899999999999999999998653
No 124
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.85 E-value=0.0031 Score=75.87 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=63.5
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHHHH
Q 002819 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (876)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~ 113 (876)
...|.|-|.|.++-+|+|||+..+..+ -.+++|-|+.+..-.. .....|-+.|.+.... .+|+|.|++.-..
T Consensus 937 ssgwqkLwvvft~fcl~fyKS~qD~~~----laslPlLgysvs~P~~-~d~i~K~~vfkl~fk~---hvyffraes~yt~ 1008 (1036)
T KOG3531|consen 937 SSGWQKLWVVFTNFCLFFYKSHQDSEP----LASLPLLGYSVSIPAE-PDPIQKDYVFKLKFKS---HVYFFRAESYYTF 1008 (1036)
T ss_pred cccceeeeeeecceeeEeecccccccc----cccccccccccCCCCC-CCCcchhheeeeehhh---hHHHHhhhhhhhh
Confidence 346999999999999999999988763 2344555665554222 2234577788887664 8999999999999
Q ss_pred HHHHHHHHHHHh
Q 002819 114 YEWKTALELALA 125 (876)
Q Consensus 114 ~eWI~AIr~al~ 125 (876)
+.|+..|+.+..
T Consensus 1009 ~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 1009 ERWMEVITDAPS 1020 (1036)
T ss_pred hhHHHHhhcCCc
Confidence 999999987654
No 125
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.76 E-value=0.1 Score=50.79 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=58.0
Q ss_pred eEEEEeeEeeecCC------CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceee----eeCcEEeCCCcceee-----
Q 002819 19 VFKSGPLFISSKGI------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV----- 83 (876)
Q Consensus 19 VvKeG~L~l~KkG~------~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i----~Lg~I~L~~~~sv~~----- 83 (876)
.+|.|.|.....++ .+..-+.+|+.|-++.|.|-|-+. +..+.+ +...+.+..+.....
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeeccccccccccc
Confidence 46888766433221 122346789999999999987432 222322 233444443222100
Q ss_pred --ccCCceEEEEec-CCCCC--ceEEEEeCCHHHHHHHHHHHH
Q 002819 84 --REDKKLLTVLFP-DGRDG--RAFTLKAETSEDLYEWKTALE 121 (876)
Q Consensus 84 --~~~Kk~~fvIt~-~~~~g--Rty~LqAdSeeE~~eWI~AIr 121 (876)
....++.|.++. .+..| +.+.|+|+|+.|+.+||.||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 013456777653 33334 479999999999999999984
No 126
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=95.56 E-value=0.0066 Score=70.45 Aligned_cols=94 Identities=29% Similarity=0.448 Sum_probs=62.2
Q ss_pred EEEEeeEeeecCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee---ccCCc---eEE
Q 002819 20 FKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKK---LLT 91 (876)
Q Consensus 20 vKeG~L~l~KkG~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~---~~~Kk---~~f 91 (876)
+.+|-| +.|||. ..+.|+.|||+|.+-.|.|.|....... .-..|++..+.+|.. +..++ -.|
T Consensus 736 ~iEGQL-KEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKAF 806 (851)
T KOG3723|consen 736 LIEGQL-KEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKAF 806 (851)
T ss_pred hhcchh-hhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchhh
Confidence 667733 223342 3577999999999999999775433321 113466666555431 11111 256
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.|+.-+ .+|.|.|.+++-+++|++.|+=+++
T Consensus 807 EIFTAD---~T~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 807 EIFTAD---KTYILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred heeecC---ceEEeecccccCHHHHHHHHHHHHH
Confidence 666433 7899999999999999999998876
No 127
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=94.57 E-value=0.042 Score=63.13 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=61.0
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~ 98 (876)
+-..| ++.+.......|+-|||+|+.+.|.||+++...... .-|.|.+....- ...+..-+.|.|...
T Consensus 24 ~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hG-------cRgsi~l~ka~i-~ahEfDe~rfdIsvn-- 91 (611)
T KOG1739|consen 24 VERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHG-------CRGSICLSKAVI-TAHEFDECRFDISVN-- 91 (611)
T ss_pred hhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhhcc-------cceeeEeccCCc-ccccchhheeeeEec--
Confidence 34444 333555456689999999999999999998776421 223355544221 011112233444433
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 99 ~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...+++.|.+...++.|+++|.-.-.
T Consensus 92 -~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 92 -DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred -cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 37899999999999999999986643
No 128
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=94.54 E-value=0.051 Score=63.84 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=69.4
Q ss_pred CCCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcc-eeeccCCceEE
Q 002819 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLT 91 (876)
Q Consensus 13 ~~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~s-v~~~~~Kk~~f 91 (876)
..++..++|+|.|+ |-.....+-..||++|-+..+.|-+-.. ..+....++.. .+.+..... ........+.|
T Consensus 266 V~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~~~k~~~r~---~~s~~~~~v~~~~~~~~~~tF 339 (623)
T KOG4424|consen 266 VSPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLPGSKYEVRA---RCSISHMQVQEDDNEELPHTF 339 (623)
T ss_pred cCcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hcccceeccce---eeccCcchhcccccccCCceE
Confidence 35677899999776 5555556789999999998888877655 32221111111 122221111 11223455678
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
+++-. .|..-|+|.|+++..+|+++|+.+|..
T Consensus 340 ~~~G~---~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 340 ILTGK---KRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred EEecc---cceEEeecCchhhHHHHHHHHHHHHHH
Confidence 88743 489999999999999999999999863
No 129
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.20 E-value=0.88 Score=43.71 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=52.6
Q ss_pred cEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCC--CceEEEEeCCHHHHH
Q 002819 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLY 114 (876)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~--gRty~LqAdSeeE~~ 114 (876)
=+.|-+-|-...|+|-|-..... ..+...-+--..|.+....-.....+-.+.|.+...++. ..+|.+||.|.++.+
T Consensus 24 ~~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~ 102 (114)
T cd01232 24 GRERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQ 102 (114)
T ss_pred CceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHH
Confidence 36677778888888888644331 111110111122333222111111234556777665543 479999999999999
Q ss_pred HHHHHHHHHHh
Q 002819 115 EWKTALELALA 125 (876)
Q Consensus 115 eWI~AIr~al~ 125 (876)
.|+..|+.++.
T Consensus 103 ~W~~~I~~il~ 113 (114)
T cd01232 103 EWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 130
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.67 E-value=0.79 Score=43.68 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=57.5
Q ss_pred eEEEEeeEeeecCCCCCCc-EEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee---ccCCceEEEEe
Q 002819 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVLF 94 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~W-KKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~---~~~Kk~~fvIt 94 (876)
.+.+|=|.+... .+.| +.|+|-|-++.|+|=|...-....-.-.-.+.+..+.|.+...-.. ...-++.|.|.
T Consensus 2 li~~Gel~~~s~---~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQ---NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEec---ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 467785553332 1223 5799999999999977543211000001123444444444322000 01124567776
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
.. ..+..|.|+|.|+++...|+.|+..
T Consensus 79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 53 2356799999999999999999975
No 131
>PF15406 PH_6: Pleckstrin homology domain
Probab=93.28 E-value=0.15 Score=48.19 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=47.0
Q ss_pred EEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHH
Q 002819 40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119 (876)
Q Consensus 40 RWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~A 119 (876)
-|-.-+|.-|.||....+.. .+.|.|.|..+..+......+|.|.+ .|...+|+|.+..|++.||.+
T Consensus 42 AwAsqTGKGLLF~~K~~dka--------~P~GiinLadase~~~~g~~kF~f~~-----~G~khtF~A~s~aERD~Wv~~ 108 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKA--------SPSGIINLADASEPEKDGSNKFHFKI-----KGHKHTFEAASAAERDNWVAQ 108 (112)
T ss_pred hhhhccCceEEEEecccccc--------CCcceEehhhccccccCCCceEEEEe-----CCceeeeecCCHHHhccHHHH
Confidence 46666775555555333332 14566888776665555555555444 368999999999999999999
Q ss_pred HH
Q 002819 120 LE 121 (876)
Q Consensus 120 Ir 121 (876)
|.
T Consensus 109 lk 110 (112)
T PF15406_consen 109 LK 110 (112)
T ss_pred hh
Confidence 86
No 132
>PF15404 PH_4: Pleckstrin homology domain
Probab=93.28 E-value=0.49 Score=49.14 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.4
Q ss_pred EEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCC
Q 002819 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS 57 (876)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~ 57 (876)
+.|+||.+.+ ....|+++|+||.+|.|+.|..-..
T Consensus 1 ~sG~LY~K~~--khs~F~~~~vvL~~G~Li~f~~~~R 35 (185)
T PF15404_consen 1 MSGYLYQKPR--KHSTFKKYFVVLIPGFLILFQLFKR 35 (185)
T ss_pred CCceeeecCC--CCCCceEEEEEEeCCEEEEEEEEee
Confidence 4699995433 3567999999999999999987543
No 133
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.15 E-value=0.62 Score=53.59 Aligned_cols=110 Identities=20% Similarity=0.269 Sum_probs=81.1
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 002819 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (876)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~ 664 (876)
..||+.|..+..+|. ||+.=+-.|..++.+|+.+..+-.+|.--|++++++|++|+++...|-..+.--.+ .+
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~------kl 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRG------KL 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------HH
Confidence 478888888887775 67777888999999999999999999999999999999999999999876542222 11
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
-..-..+=+.+-..++.|..|++||.+|-+.|--|..
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhh
Confidence 1222223334556677777777777777666655444
No 134
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.13 E-value=0.36 Score=44.69 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=56.4
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCC---CCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL---PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~---p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
..+++|+|.....|. =|.|=|-|-++.|+|-+-..... .+....-.++|..+.+... .|.+.
T Consensus 2 ~Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------~~~~~ 66 (96)
T cd01228 2 QLVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------PFRIH 66 (96)
T ss_pred cccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------hhhcc
Confidence 357899777444332 47788889999888877542111 0111111244444444332 13332
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
.+++++|+|.|.|..|..+|+.+|+...
T Consensus 67 --~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 67 --NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred --ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 3468999999999999999999998753
No 135
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.44 E-value=0.022 Score=66.61 Aligned_cols=177 Identities=19% Similarity=0.163 Sum_probs=110.6
Q ss_pred CcccccchHHHh-hhcCCCcH-HHHHHHHHHHh---cC--CcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchh
Q 002819 163 SLVVGRPILLAL-EDIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235 (876)
Q Consensus 163 ~~VFGvpL~~ll-~~~~~VP~-iL~~~i~~Le~---~G--l~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VA 235 (876)
...||.-|.... .-+++||. .+.+||.-+.. ++ +.-.|.|++..+.... .+...|....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 344555443322 22567888 77788777665 22 3455677766433211 2224455567899999
Q ss_pred hhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhh
Q 002819 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (876)
Q Consensus 236 slLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (876)
-+++-|.+.+|.|+.. ..|+ +.+...+.+..++ +.+...++.|+.+-+.|..||...+.-. .+++
T Consensus 279 ~d~dp~s~Q~~pp~~~-~~~~------k~Ds~s~sv~~~~-~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~ 343 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK-EAFE------KEDSLSESVESLR-FSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLA 343 (670)
T ss_pred cccChhhhhcCCCCcc-cccc------cccCcccceeeec-cccccCCcccchHhhhhchhhhhhcccc-------ccce
Confidence 9999999999999543 2221 2222334455554 3567899999999999999998877633 8999
Q ss_pred HhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 316 i~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
|++.|+++|+++. ++. ++..+-. ..+....++.+.|++....|..+.
T Consensus 344 I~~~~~~~r~ppt----L~~-~~~h~~~---------~~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 344 IVWSPNLFRPPPT----LNG-ADTHLLS---------GLNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eecCCCCCCCCCC----CCc-hhhhhcc---------cCCcceeecccchhhhhhhhhccc
Confidence 9999999998852 322 1111000 011223456677777777777654
No 136
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.43 E-value=0.031 Score=65.42 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=51.0
Q ss_pred HHHHHHHHhccccCCCCcchhhHhhcccccCCCCCCCCCcccccC--CCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002819 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (876)
Q Consensus 294 l~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~~~~~~led~~~--~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (876)
+.||..|+.+.....|.+.|||+|+||+|+|.+. ++.-.. ..|+ ++..+.....-+++|++.|-+.|
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrske-----ies~lcs~~~Gd------aAf~avq~qsvV~EfilnhvDvl 69 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKE-----IESSLCSHLWGD------AAFSAVQAQSVVSEFILNHVDVL 69 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHH-----HHHhhhcccccc------HHHHHHHhhhhhhhhccccccee
Confidence 3689999999999999999999999999999763 222111 0122 12222333345779999999999
Q ss_pred cCCcc
Q 002819 372 FDDES 376 (876)
Q Consensus 372 F~~~~ 376 (876)
|..-.
T Consensus 70 F~~~a 74 (670)
T KOG1449|consen 70 FLPTA 74 (670)
T ss_pred cCCcC
Confidence 98654
No 137
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=91.90 E-value=0.11 Score=63.40 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=66.5
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
..++|.|||-+-+-+ +...+.|||.-+.+..+.||...++..+++ -|.+...+.|.. -+...|.+..
T Consensus 85 sp~~~~gwldk~~pq-g~~~~qkr~vkf~~~s~~yf~~~k~py~k~---------~i~va~is~v~~--~gd~kfevit- 151 (1186)
T KOG1117|consen 85 SPVIKSGWLDKLSPQ-GEYPFQKRWVKFDGSSLEYFLSPKDPYSKG---------PIPVAAISAVRN--FGDNKFEVIT- 151 (1186)
T ss_pred CchhhcchhhccCcC-cccccCccceecCCCCccccCCCCCCCCCC---------ceeeehhhhhhh--ccCceEEEEe-
Confidence 448999977644333 245589999999999999999999887443 244443333211 1222344432
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 97 ~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+.|+|.|.++.+.++..|+..+++++.
T Consensus 152 --n~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 152 --NQRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred --cceEEEEecCCcccceeeechhhhcch
Confidence 349999999999999999999999874
No 138
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.30 E-value=5.3 Score=43.20 Aligned_cols=70 Identities=33% Similarity=0.388 Sum_probs=54.1
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE---RRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~---~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (876)
.+||.|...+..|.++|...-|.=..+|+-+++-+..+-. .-..|+++|.+++..|++.+.=..-++..|
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999986666666666666665555544 445588999999999999888888888777
No 139
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.90 E-value=1.2 Score=42.48 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=56.9
Q ss_pred cEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHHHHHHH
Q 002819 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (876)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eW 116 (876)
=..||++|-.+.|.+....+... .-.-+-.+++.++.++.... .+..++.|.|. +..--...+.|.+.+|+.+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~--G~li~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEIS--GPLIERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEe--ccCcCcEEEEeCCHHHHHHH
Confidence 46899999999999988755332 00112235777777775322 24556788886 33345788899999999999
Q ss_pred HHHHHHHH
Q 002819 117 KTALELAL 124 (876)
Q Consensus 117 I~AIr~al 124 (876)
+..|+..+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998753
No 140
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.52 E-value=1.9 Score=40.59 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=49.1
Q ss_pred EEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHH
Q 002819 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (876)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI 117 (876)
.+..|-|-+..|+|-.-.... +-.-...++|..+.+.+... ...-+.+|.|... .+.+.+||+|+++..+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D---~~~~kNafki~t~---~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKD---RENAKKVLKLLIF---PESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCC---CcCcCceEEEEeC---CccEEEEeCCHHHHHHHH
Confidence 445477777777776543321 11223344555555544222 2234556655432 278999999999999999
Q ss_pred HHHHHHH
Q 002819 118 TALELAL 124 (876)
Q Consensus 118 ~AIr~al 124 (876)
+.|+++.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999885
No 141
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.11 E-value=2.8 Score=45.67 Aligned_cols=123 Identities=21% Similarity=0.287 Sum_probs=66.7
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhh-----hhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEAR-----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (876)
+-...|+++-..+..|+.+|.+... .....+. +......++.+-..|++.+++++++++..+.--..+...+..
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQ-LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888999999987665 2222211 122233445555667777777777777777766666666643
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 654 SSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 654 ~~~~~~----~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
....+. .-........++..++...+..+..|++.+..-+.++.++-..
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 0011112223334444444444444555555555555555444
No 142
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=90.03 E-value=0.53 Score=52.45 Aligned_cols=108 Identities=17% Similarity=0.307 Sum_probs=70.1
Q ss_pred CCCCceEEEEeeEeeecC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCC-CCcceeeeeCc--EEeCCCcceeeccCCce
Q 002819 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQ-RGGEVNLTLGG--IDLNNSGSVVVREDKKL 89 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~-~~~ev~i~Lg~--I~L~~~~sv~~~~~Kk~ 89 (876)
.++..|+..||..-...+ ..+..++.||..|+|.+++.|..++-.... ..++++..+.. +.+... ....+.+++
T Consensus 276 ~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd--sd~~D~R~~ 353 (505)
T KOG3549|consen 276 AVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD--SDTVDSRQH 353 (505)
T ss_pred CccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc--ccccccccc
Confidence 457789999965533223 236778999999999999999876543210 01111111111 111111 112256888
Q ss_pred EEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 90 ~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
||.+... .|...||..+...|+..|-.+.+.+.-
T Consensus 354 CF~~qs~--~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 354 CFLLQSS--GGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred eEEEEcC--CCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 9998754 478999999999999999999888753
No 143
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.76 E-value=6.5 Score=46.91 Aligned_cols=100 Identities=22% Similarity=0.337 Sum_probs=70.1
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLE------RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~------~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (876)
.--||+.-.+.+-..|+-=-+.|+.|=..+. .|.+.+++++..|+-||-++|.=+.+=..--.+++.
T Consensus 222 lk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~------- 294 (581)
T KOG0995|consen 222 LKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK------- 294 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH-------
Confidence 3445555555555555444444444433333 345578999999999999888766555444444444
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 657 ~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
+...+=.||+..|+++..|.+++.+|+.++--|
T Consensus 295 ----------~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 295 ----------KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445888999999999999999999999998777
No 144
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=8.4 Score=43.34 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=70.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhcCCCCC
Q 002819 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE--------RDLRAALEVGLSMSSGQ 657 (876)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E--------~~l~~~Le~al~~~~~~ 657 (876)
=.++....|+.|..+|+-.+-.+|++|.||++.+.+=...|+.++++|+.|++.= ...+.||+.+=+ .-.
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n--~~~ 288 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN--LEA 288 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc--CcC
Confidence 3566677899999999999999999999999988777666666666666655431 223446666544 111
Q ss_pred CC----CC--CCCChhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 002819 658 FS----SS--RGMDSKTRAELEEIALAEADVARLKQK----VAELHHQLNQQRQ 701 (876)
Q Consensus 658 ~~----~~--~~~p~~~~~ll~eia~~E~~v~~Le~~----v~~l~~~l~~~~~ 701 (876)
++ +- ..|-.+.-+.++.=...|..|-.|++- |.+|-.=|.|-|.
T Consensus 289 ~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~ 342 (365)
T KOG2391|consen 289 LDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRL 342 (365)
T ss_pred CCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHH
Confidence 22 11 223344445555555677777777763 2344444444444
No 145
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=88.08 E-value=1.6 Score=43.17 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.1
Q ss_pred ceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 88 k~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.+.|.|..-|+.|..|+|.|+|..++++|+++|.++
T Consensus 99 ~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 99 LYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 345666666777788999999999999999999864
No 146
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=88.02 E-value=0.45 Score=58.79 Aligned_cols=90 Identities=23% Similarity=0.380 Sum_probs=57.6
Q ss_pred EEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCC
Q 002819 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (876)
Q Consensus 20 vKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~ 99 (876)
--+|||+ |.....+.|.+|||+|.++.|.||++........++ .+.+.. .. ....... -.+...+.
T Consensus 78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~-------~~~~~~--a~-i~~~~~~-~~~~~~~~- 143 (799)
T KOG1737|consen 78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGG-------GINLVT--AW-IQNGERM-DICSVDGS- 143 (799)
T ss_pred cccceee--ccccccCCcccceEEecCcceeeeccCCccccCCCC-------cccccc--cc-cccCCCc-ccchhhcc-
Confidence 3468666 777778899999999999999999987665422222 222211 00 0111111 11111222
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 002819 100 GRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 100 gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
.+.|+..+-+......|+.+++.+
T Consensus 144 ~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhhhhhHHHhhcchhhhhhhc
Confidence 467888999999999999999876
No 147
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.98 E-value=4.6 Score=39.92 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=50.6
Q ss_pred EEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHH
Q 002819 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (876)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI 117 (876)
+.|.+-|-...+.|-|-............-.--..|.+....-.....+..+.|.|..... ...|.|+|.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 5688888888888877553221101110011111233322111001122345677766543 469999999999999999
Q ss_pred HHHHHHHh
Q 002819 118 TALELALA 125 (876)
Q Consensus 118 ~AIr~al~ 125 (876)
..|+..+.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999985
No 148
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=86.48 E-value=3.4 Score=38.86 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=49.4
Q ss_pred CCCcEEEEEEEeC----CeeeEecC--CCCCCCCCCcceeeeeCc-EEeCCCcceeeccCCceEEEEecCCCCCceEEEE
Q 002819 34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLGG-IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLK 106 (876)
Q Consensus 34 ~k~WKKRWFVL~~----~~L~YYKd--~~~~~p~~~~ev~i~Lg~-I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~Lq 106 (876)
...|.|.-.+|+. ..|.||-. ++...|+.+. .... .++..++... -.++.+.|++... ++..|.|.
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v----~C~~I~EvR~tt~LE-mPD~~nTFvLK~~--~~~eyI~E 90 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQV----ACSSISEVRECTRLE-MPDNLYTFVLKVD--DNTDIIFE 90 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCcccc----chhhhhhhhhccccc-ccCcccEEEEEec--CCceEEEE
Confidence 4569887777753 35555555 4444333211 1111 1222222221 2457778888754 46799999
Q ss_pred eCCHHHHHHHHHHHHH
Q 002819 107 AETSEDLYEWKTALEL 122 (876)
Q Consensus 107 AdSeeE~~eWI~AIr~ 122 (876)
|.+..+++.|+..|+.
T Consensus 91 a~d~~q~~SWla~Ir~ 106 (107)
T cd01231 91 VGDEQQLNSWLAELRY 106 (107)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999974
No 149
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=84.08 E-value=2.7 Score=36.76 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
++.-|++-+..|+++|+.|..++..+|+.+..-.. -+. + .-++.+|..+..-.+++.-|+.+|....
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~---~~~------~---~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSD---EKK------K---KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------c---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999998752111 010 1 3456677888888899999999886543
No 150
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.00 E-value=38 Score=43.86 Aligned_cols=88 Identities=27% Similarity=0.367 Sum_probs=44.1
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-HHHHHHHHHHH--
Q 002819 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-IALAEADVARL-- 685 (876)
Q Consensus 609 q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~e-ia~~E~~v~~L-- 685 (876)
+-.++.|-..++++--+|+-..++|.-..+....+..-|++-+-.--.. ..+...+.+...++.+ |+-+|-+|-.|
T Consensus 801 ~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~-~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe 879 (1293)
T KOG0996|consen 801 LHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA-VLKKVVDKKRLKELEEQIEELKKEVEELQE 879 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555544444444444444444444444333322000000 1234456666677766 77777777777
Q ss_pred ----HHHHHHHHHHHH
Q 002819 686 ----KQKVAELHHQLN 697 (876)
Q Consensus 686 ----e~~v~~l~~~l~ 697 (876)
++++..|+..+-
T Consensus 880 ~~~Kk~~i~~lq~~i~ 895 (1293)
T KOG0996|consen 880 KAAKKARIKELQNKID 895 (1293)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 366666666543
No 151
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=83.73 E-value=12 Score=39.38 Aligned_cols=71 Identities=37% Similarity=0.405 Sum_probs=48.4
Q ss_pred hhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH----HHHHHHH
Q 002819 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEAD 681 (876)
Q Consensus 606 ~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~e----ia~~E~~ 681 (876)
+.||+.-++|.+--+.-|..||+|++.|+-|=.. ....+. ..+..=.+..+++|.| |-.||+|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~------------~~~~~~-~~~~~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ------------GNSSGS-SSPSNNASNLKELLREKEERILALEAD 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------CCCCCC-CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999998899999999999988766321 111111 1222333445566655 6778888
Q ss_pred HHHHHHHH
Q 002819 682 VARLKQKV 689 (876)
Q Consensus 682 v~~Le~~v 689 (876)
+++.||+-
T Consensus 80 ~~kWEqkY 87 (205)
T PF12240_consen 80 MTKWEQKY 87 (205)
T ss_pred HHHHHHHH
Confidence 88888876
No 152
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=83.53 E-value=0.34 Score=57.78 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=40.7
Q ss_pred eEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCc
Q 002819 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG 79 (876)
Q Consensus 19 VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~ 79 (876)
-..+||||+.|.-. ....|++.||||.+..|+.|.+..... .+..|.+-...|....
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a~ 619 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVAE 619 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhHH
Confidence 46788999766642 245699999999999999999988775 3444455555554433
No 153
>PF15411 PH_10: Pleckstrin homology domain
Probab=82.15 E-value=16 Score=35.28 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=63.5
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC---------CCcceeeeeCc-EEeCCCcceeecc-CC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTLGG-IDLNNSGSVVVRE-DK 87 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~---------~~~ev~i~Lg~-I~L~~~~sv~~~~-~K 87 (876)
...-|.+.+.+. ..|+.+++-|-...|.++|+.+..... +...-.+.|.| |-+.+...+.... ..
T Consensus 7 Lll~g~~~V~k~----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g 82 (116)
T PF15411_consen 7 LLLHGTLTVGKD----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPG 82 (116)
T ss_pred eEEccEEEEEeC----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCC
Confidence 344455554443 469999999999999999987766532 12233455544 7777776654443 22
Q ss_pred ceEEEEec-CCCCCceEEEEeCCHHHHHHHHHHH
Q 002819 88 KLLTVLFP-DGRDGRAFTLKAETSEDLYEWKTAL 120 (876)
Q Consensus 88 k~~fvIt~-~~~~gRty~LqAdSeeE~~eWI~AI 120 (876)
.+.-.|.- ....--.|+|...|++.++.|-.+|
T Consensus 83 ~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 83 SYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred ceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 23333332 2233458999999999999999875
No 154
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.11 E-value=15 Score=41.20 Aligned_cols=115 Identities=23% Similarity=0.278 Sum_probs=58.4
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 624 LALEQD----VSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM-DSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 624 ~~Leqe----V~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~-p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
-+|||| |-+|++|..+=..=.+.|+.-|..+.+..+.|..+ +..... .-..-+.+-|..|-+.|..|+.+|..
T Consensus 170 n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~--Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 170 NTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEEN--DTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccC--CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 66777776655555566777676543333333211 000000 01223555566666666666666665
Q ss_pred HHhhhcCCccchhhhh--hcccccchhhhhcccccchhhhhhhhh
Q 002819 699 QRQHHYGSLSDACDRY--QNVQNHNSQQRFLQQDFDSTLAFVNHE 741 (876)
Q Consensus 699 ~~~~~~~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (876)
...++...+.-..... .+.-|. .-+.-+++..+-.-|+|.|.
T Consensus 248 sq~e~~~k~~~~~~eek~ireEN~-rLqr~L~~E~erreal~R~l 291 (310)
T PF09755_consen 248 SQQEHSEKMAQYLQEEKEIREENR-RLQRKLQREVERREALCRHL 291 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5554444332111111 111222 23556677888888999885
No 155
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.11 E-value=9.3 Score=36.28 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.8
Q ss_pred eEEEEecCC-CCCceEEEEeCCHHHHHHHHHHHHH
Q 002819 89 LLTVLFPDG-RDGRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 89 ~~fvIt~~~-~~gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
.||.|+... .+-+++.|.|++.++++.|+..|+.
T Consensus 80 ~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 80 RCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 466655422 1257899999999999999999864
No 156
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.65 E-value=8.4 Score=42.68 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=40.6
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~----------r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
..+|..-.+|+..|..-++.||.|+.-+..-+..+.+. |..||.++..|++.|+.+.-.|..|+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 44566666777777777777777777666544444332 445566666666666666666665555
No 157
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.06 E-value=9.1 Score=37.00 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=50.2
Q ss_pred cEEEEEEEeCCeeeEecCCCCCCCCCCccee----eeeCcEEeCCCc--cee-eccCCceEEEEecCCCCCceEEEEeCC
Q 002819 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVN----LTLGGIDLNNSG--SVV-VREDKKLLTVLFPDGRDGRAFTLKAET 109 (876)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~----i~Lg~I~L~~~~--sv~-~~~~Kk~~fvIt~~~~~gRty~LqAdS 109 (876)
=+.||.-|-...+++=|.....- +.++.. +.+..+.|.... ... ....-++.|.+... .....|+|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 35788888777777777544321 122211 222332333221 110 01122346666543 223679999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002819 110 SEDLYEWKTALELALAQ 126 (876)
Q Consensus 110 eeE~~eWI~AIr~al~~ 126 (876)
+++.+.||.||..|+..
T Consensus 97 ee~K~kWm~al~~a~sn 113 (116)
T cd01223 97 EHLRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999863
No 158
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=80.69 E-value=0.88 Score=52.77 Aligned_cols=103 Identities=16% Similarity=-0.006 Sum_probs=59.5
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCC------eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeecc---CC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DK 87 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~------~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~---~K 87 (876)
...+|.|+++......+.+.|.++|++|..+ .|.+|...+... .+.....+ -+.+.+.++.++.... ..
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~-~~~~~~~~-rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRES-VRWPYRCL-RRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcc-cccchhcc-eeeEeeccceeeecccccccC
Confidence 4578999999888888889999999999876 333444332221 11111111 1556777766543321 11
Q ss_pred ceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 88 k~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
.-.|.++..... . +|-|...-+...|+++|....
T Consensus 84 ~~i~~~f~~~a~-e--~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRAE-E--LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecchH-H--HHHHHHHHHhhhhhhhhhhcc
Confidence 112222222111 1 566667778888999998754
No 159
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.56 E-value=55 Score=36.26 Aligned_cols=118 Identities=24% Similarity=0.262 Sum_probs=77.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRAALEVGLS-MSSG 656 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~---r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~-~~~~ 656 (876)
+..+..|...-.+++.|+.++.+.+..|+.-+..-++.+.+- |..||..|..|+++|.--+.+|..=-..|. ...+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~ 153 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQS 153 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 455677777778999999999999999999998888877554 778999999999999988888876223332 2212
Q ss_pred CCCCC--CCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002819 657 QFSSS--RGMDSKTRAELEEI-ALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 657 ~~~~~--~~~p~~~~~ll~ei-a~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
..+.. .+........|.+| +-.|..+.+-.+.+...+..-..
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~ 198 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLE 198 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccc
Confidence 22221 22233455666777 45677777776666666554333
No 160
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.28 E-value=1.8e+02 Score=36.51 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
+-...++|=.||-.|+.|+...|+.+..|..++.+-|.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555543333
No 161
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=78.16 E-value=0.048 Score=70.54 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=68.7
Q ss_pred CCceEEEEeeEeeec------CCCCCCcEEEEEEEeCCeeeEecCCCCCCCC----CCcceeeeeCcEEeCCCcceeecc
Q 002819 16 SNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQ----RGGEVNLTLGGIDLNNSGSVVVRE 85 (876)
Q Consensus 16 ~~~VvKeG~L~l~Kk------G~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~----~~~ev~i~Lg~I~L~~~~sv~~~~ 85 (876)
......+|+||.+.- ....+.|...||++..+.+.||||.+..... ..++..+.+.++.+.. .....
T Consensus 2296 ~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~---a~dy~ 2372 (2473)
T KOG0517|consen 2296 SAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEV---ASDYH 2372 (2473)
T ss_pred cHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHH---HHHHH
Confidence 334577899974311 1235789999999999999999998765421 1122222222221111 11224
Q ss_pred CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+|++.|.+. ..+|..|.|+|..+++|..|+.++.....
T Consensus 2373 kkk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2373 KKKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HHhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 566677765 35689999999999999999998887764
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.38 E-value=24 Score=37.41 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
+-++|-+|++.+..++..|+.+..+++..+..+..
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888888776655554
No 163
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=76.62 E-value=27 Score=47.90 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC---C-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS---S-RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~---~-~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (876)
.+...+..||++|..|+..|.+|...|.=+|++...-.|.+.. + .-+-.+..+|-.+++..|.++..|..++.++.
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3455577899999999999999999999999655433343321 1 11233344444555555555555555555554
Q ss_pred HHH
Q 002819 694 HQL 696 (876)
Q Consensus 694 ~~l 696 (876)
..+
T Consensus 1090 ~~~ 1092 (1930)
T KOG0161|consen 1090 AEV 1092 (1930)
T ss_pred HHH
Confidence 433
No 164
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=75.23 E-value=1.3 Score=53.32 Aligned_cols=83 Identities=5% Similarity=-0.129 Sum_probs=53.7
Q ss_pred EeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee--ccCCceEEEEecCCCCCceE
Q 002819 26 FISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLFPDGRDGRAF 103 (876)
Q Consensus 26 ~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~--~~~Kk~~fvIt~~~~~gRty 103 (876)
++.++-+.+++|+.+||++.++.+.||+.+-+.. .+ .+.+...++... ...++...... .+|
T Consensus 264 ~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s~---------~~~~~~~~s~~fqli~~t~~~~~~~------~s~ 327 (936)
T KOG0248|consen 264 SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-SV---------TKLEQQGAAYAFQLITSTDKMNFMT------ESE 327 (936)
T ss_pred HHHhHheeeccceEEEEEcCCCccccccCccccc-cc---------ceeeccchhHHhhhhhhceeEEEec------cCh
Confidence 3445566789999999999999999999987652 21 111211111000 01122222221 579
Q ss_pred EEEeCCHHHHHHHHHHHHHHH
Q 002819 104 TLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 104 ~LqAdSeeE~~eWI~AIr~al 124 (876)
++-++....+..||.++....
T Consensus 328 ~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 328 RTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred hhhhhhHHHHHHHHHHHhccc
Confidence 999999999999999988765
No 165
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.03 E-value=37 Score=41.96 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=70.1
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~---~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~ 660 (876)
+++|...-.++..+-.++...+..+ ..++ ++-..+......|+++.+.|+.++..-..=...|+..+....|
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~-~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG---- 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSIL-SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG---- 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 5566666666666777766654433 3333 3333445556667777777777777666666666666654444
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002819 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (876)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (876)
.++++...+|.++..++++....+.+|.+.....
T Consensus 259 ---------~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 259 ---------DLFEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6777788888888888888888888888776543
No 166
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.82 E-value=22 Score=37.44 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=16.6
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~ 619 (876)
|-+|.+.=.|||.+|..=.++|-.|..--.|..+++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL 49 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKAL 49 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555554555554444333333333
No 167
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=72.14 E-value=1e+02 Score=32.68 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=79.2
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHh---------------HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQ---------------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q---------------~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~ 646 (876)
++-+|=|.+..-|+.|+-+|++.=..-| ..|.++.+.-.++-++||-||.+.+++--+|-.||.+
T Consensus 17 aa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~ 96 (205)
T PF12240_consen 17 AACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQF 96 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888999988885322211 1245555666778999999999999999999999865
Q ss_pred HHHhhcCCCC-----CCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 647 LEVGLSMSSG-----QFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 647 Le~al~~~~~-----~~~-~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
=-.|...+.. .+. .|..=+..-....++|.+...-+..||..|..||.+|-+-
T Consensus 97 a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~EK 155 (205)
T PF12240_consen 97 AMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAEK 155 (205)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4333222211 111 1211111111557899999999999999999999988653
No 168
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.84 E-value=0.7 Score=54.44 Aligned_cols=88 Identities=17% Similarity=0.364 Sum_probs=52.4
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHHHH
Q 002819 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (876)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~ 113 (876)
+|..+|+||..+.-.+.+|++..+.. +.+-..+.+.+|.++.+-.+ ...+...|.+.+....-..++|.|+++...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~--~~~k~~i~l~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNL--SQQKYAIKLLVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCcccc--ccccceEEEEeecCCccceeEEecCCHHHH
Confidence 55667777766554444444333221 11223345566666654332 223333454444333467899999999999
Q ss_pred HHHHHHHHHHHh
Q 002819 114 YEWKTALELALA 125 (876)
Q Consensus 114 ~eWI~AIr~al~ 125 (876)
..||.|.+-|..
T Consensus 448 A~WMAaCrLASK 459 (664)
T KOG3727|consen 448 ARWMAACRLASK 459 (664)
T ss_pred HHHHHHhhHhhc
Confidence 999999998854
No 169
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.72 E-value=19 Score=36.64 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
--.+|..++..|+++|..-..-...|+.-|..-.. . | .+.+|..+|+.|+.++..|+.++..|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~------~-~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSS------E-P-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666655556554431111 1 1 2458999999999999999999988873
No 170
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=70.29 E-value=1.8 Score=52.96 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=35.2
Q ss_pred CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
.+.+.|++.+.....-.|.|.|++.+++.+|+++|+.+...+
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 455788888776667789999999999999999999987643
No 171
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.10 E-value=65 Score=36.39 Aligned_cols=100 Identities=25% Similarity=0.290 Sum_probs=56.0
Q ss_pred hhhhhhHhHh----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcCCCCCCC-CCCC
Q 002819 602 ARGNAILQAS----------LERRKQALHERRLALEQDVSRLQEQLQAER-------DLRAALEVGLSMSSGQFS-SSRG 663 (876)
Q Consensus 602 ~~~n~~~q~~----------~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~-------~l~~~Le~al~~~~~~~~-~~~~ 663 (876)
+|.+|.|||. ++.=+..|.+....|++|.+.|.+.++.=. ..+..|+.-+..-..... +..+
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~ 206 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC 206 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 5777777764 223333455555555555555555444333 233333333321111111 2244
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
=+.+..++=++|+.++++|..+.+++.+|+.+|.+-..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888888777787777777766555
No 172
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.85 E-value=92 Score=33.92 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=19.9
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 609 q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
+..|++......+++.+|+-++..|...+++=.+....|.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666665555554444333333333
No 173
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.42 E-value=1.2e+02 Score=33.14 Aligned_cols=112 Identities=23% Similarity=0.356 Sum_probs=64.4
Q ss_pred HhhhhhHHHHHHHH----HHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 002819 586 RLEITKNDLRHRIA----KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (876)
Q Consensus 586 ~~~~~~~~~~~~~~----~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~ 661 (876)
+.|..+.+|..|+. +=.+.+..|+.+ +.+-..|.+.+..+|.+-..|+..-.+=......|+.--.+.. .-=
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~-e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~---eEk 77 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEES-EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQE---EEK 77 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34555666666652 112344445444 3344455555555555555555544333333333333221110 011
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
..|..++.+.-.+|+.|+.++...+..+..|+.+|...|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788999999999999999999999999999988776
No 174
>PRK11637 AmiB activator; Provisional
Probab=69.40 E-value=32 Score=40.17 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
++=.+|+.++.+|..++.++..++..|.+...
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544433
No 175
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.54 E-value=66 Score=40.36 Aligned_cols=109 Identities=19% Similarity=0.373 Sum_probs=65.8
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCC
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEV----GLSMSS 655 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~---~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~----al~~~~ 655 (876)
-|+|++.++.++|.|+. .|+...+++-+ .+.++|..|.+.-++|.+++++=.+.+..|.. .|+...
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777764 23333333322 23444555655555555555544444444442 222211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 656 ~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.. .|. +-..-++.-.|+..+...+-.|..-+..++.++..|+.
T Consensus 625 ~~--~P~-LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQ--LPV-LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred cc--CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222 44555888899999999999999999999999977654
No 176
>PRK11519 tyrosine kinase; Provisional
Probab=68.00 E-value=91 Score=39.08 Aligned_cols=87 Identities=20% Similarity=0.296 Sum_probs=57.0
Q ss_pred HHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHH
Q 002819 597 RIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEI 675 (876)
Q Consensus 597 ~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~ei 675 (876)
+|+.++ .++-++..+++|.+....-..-|++.+.+|+++|++ |..|...-. ..+.+. ++..++.+|..+
T Consensus 244 ~iaN~l-~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~-----~~~~vd----~~~ea~~~l~~~ 313 (719)
T PRK11519 244 DILNSI-TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ-----DKDSVD----LPLEAKAVLDSM 313 (719)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCC----chHHHHHHHHHH
Confidence 444333 455566677777777777777889999999888875 333333222 122222 457788888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002819 676 ALAEADVARLKQKVAELH 693 (876)
Q Consensus 676 a~~E~~v~~Le~~v~~l~ 693 (876)
+-++..+..|+.+..+|.
T Consensus 314 ~~l~~ql~~l~~~~~~l~ 331 (719)
T PRK11519 314 VNIDAQLNELTFKEAEIS 331 (719)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777766653
No 177
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.39 E-value=87 Score=35.76 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 673 EEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
.+++.++.++..++.++..++.++.+
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444443
No 178
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=66.94 E-value=50 Score=38.27 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=61.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----------CC---CCCChhHHHHHHHHHHH
Q 002819 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-----------SS---RGMDSKTRAELEEIALA 678 (876)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~-----------~~---~~~p~~~~~ll~eia~~ 678 (876)
.+|=..+.+.+..||....+..+++..-...-..|+.|+....|++. =| -+-++.-..|+.||..|
T Consensus 250 ~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l 329 (384)
T PF03148_consen 250 RKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKEL 329 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHH
Confidence 34444555666666666666666666666666667777655555432 12 34556667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 679 EADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 679 E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
+..|..|.+++...+..+..-...
T Consensus 330 ~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 330 RESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888877665553
No 179
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.93 E-value=1.3e+02 Score=32.60 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~Le 627 (876)
.|+.++..-..|+.+|.+--+.....+..++.++..++.+|..|.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555544
No 180
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.50 E-value=80 Score=33.33 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=69.6
Q ss_pred cccCcccCCCCcccCCCCh--hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHh----HHHHHHHHHHHHHHHHHH
Q 002819 560 WGRSNARKTSSVESIDSSG--EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR----KQALHERRLALEQDVSRL 633 (876)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~r----k~~~~~~r~~LeqeV~~L 633 (876)
.|++.. +......||+. +.+-++-||+.-=.+|-.+|++- |...++| .....--|-+|||=..=-
T Consensus 74 lG~~~~--s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~-------~~~~~~~~~~~~~~~~lvk~e~EqLL~YK 144 (195)
T PF12761_consen 74 LGRGGK--SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKV-------EQAAESRRSDTDSKPALVKREFEQLLDYK 144 (195)
T ss_pred hccccC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-------HHHHHhcccCCcchHHHHHHHHHHHHHHH
Confidence 555443 45556677765 45667888988888888888642 2222322 112223344666655555
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 634 QEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 634 q~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
++||++ .-+ ++ ...+...+.+=++|..+|..|.-||.++..=+..|.+-+
T Consensus 145 ~~ql~~------~~~---~~--------~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 145 ERQLRE------LEE---GR--------SKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHh------hhc---cC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555543 222 21 223456677778888888888888888877777776543
No 181
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=66.44 E-value=29 Score=40.05 Aligned_cols=68 Identities=29% Similarity=0.324 Sum_probs=42.9
Q ss_pred HhHhhhhhHHHHHHHHHHhh------------------------hhhhHhHhHHHhHHHHHH-----------HHH---H
Q 002819 584 IQRLEITKNDLRHRIAKEAR------------------------GNAILQASLERRKQALHE-----------RRL---A 625 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~------------------------~n~~~q~~~~~rk~~~~~-----------~r~---~ 625 (876)
|++||..|.-||.++..+|- -=-+||+-++|-|..+.. ||. .
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999988743321 123588888887765532 221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGL 651 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (876)
.+.+-++||+.|+.|..-|.||=+-|
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~l 315 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRML 315 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667777777777776665544
No 182
>PRK11637 AmiB activator; Provisional
Probab=66.36 E-value=1.2e+02 Score=35.36 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=47.0
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 002819 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~ 659 (876)
|-..|+.+...+.+|... ++.|+..+..+.....+++++..+|+.+..+-..+...|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~-----------k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~---------- 226 (428)
T PRK11637 168 RQETIAELKQTREELAAQ-----------KAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES---------- 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 455566666666555433 33344444444455555555555555555444444444443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
..++.-++|+.|+.+..+|+..+..|..+.
T Consensus 227 -------~~~~~~~~l~~l~~~~~~L~~~I~~l~~~~ 256 (428)
T PRK11637 227 -------SLQKDQQQLSELRANESRLRDSIARAEREA 256 (428)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444556666667777777776665543
No 183
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=65.91 E-value=75 Score=38.46 Aligned_cols=98 Identities=29% Similarity=0.423 Sum_probs=59.9
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhh--------------HhH---hHHHhHHHHHHH-------HHHHHHHHHHHH
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAI--------------LQA---SLERRKQALHER-------RLALEQDVSRLQ 634 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~--------------~q~---~~~~rk~~~~~~-------r~~LeqeV~~Lq 634 (876)
.=+..|-||+.-=.+|+.+..|-.|+=+. ||| .+.+|.+.+.+- =..|..++.+++
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34667778887777888777554332211 222 234444444333 223666677778
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 635 EQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 635 ~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
++|+.|+.+|.-++. ++|.||+||+-+... =++.|.+++...
T Consensus 190 ~~ld~Etllr~d~~n-----------------~~q~Lleel~f~~~~---h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQN-----------------RVQTLLEELAFLKRI---HKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHhc---cHHHHHHHHHHH
Confidence 888888888887776 456899998887644 344444444443
No 184
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.57 E-value=82 Score=39.52 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=80.7
Q ss_pred hhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 002819 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVAR 684 (876)
Q Consensus 606 ~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~ 684 (876)
+-++.+++.|......-..-|++++.+|+++|.. |..|..--.. .+.+ .+...++.+|.+|+-||..+..
T Consensus 252 ~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~-----~~~~----d~~~ea~~~l~~~~~l~~ql~~ 322 (726)
T PRK09841 252 NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ-----RDSV----DLNLEAKAVLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCC----CCCHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666667788888888888864 3333332221 1222 2356788888888888888877
Q ss_pred HHHHHHHHHH----------HHHHHHhhhcCCccchhhhhhcccccchhhhhcccccchhhhhhhhhhhhhhh----hhc
Q 002819 685 LKQKVAELHH----------QLNQQRQHHYGSLSDACDRYQNVQNHNSQQRFLQQDFDSTLAFVNHERKQRTE----ENL 750 (876)
Q Consensus 685 Le~~v~~l~~----------~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 750 (876)
|+.+..+|.. .|..++..-...+.....+....|..+.....++.+.++.-..-+..-+++.| ...
T Consensus 323 l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~ 402 (726)
T PRK09841 323 LTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSS 402 (726)
T ss_pred HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7766665543 11111111000111112223344555555556666666666666555444444 344
Q ss_pred ccccchhhcccc
Q 002819 751 LGADWRNIKGQG 762 (876)
Q Consensus 751 ~~~~~~~~~~~~ 762 (876)
...+||.|-...
T Consensus 403 ~~~~~rIid~A~ 414 (726)
T PRK09841 403 AIGNVRIIDPAV 414 (726)
T ss_pred CCCceeeccCCC
Confidence 456777776643
No 185
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=65.45 E-value=87 Score=37.00 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=35.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
..-|.+...|=.||...|++|.-|..+.++||+||..|+.
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 3457788899999999999999999999999999987765
No 186
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=65.22 E-value=29 Score=47.00 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=64.5
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLK 686 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~-~~~~~~p~~~~~ll~eia~~E~~v~~Le 686 (876)
++-+...+|..+..+-..|+.++.+|++.|+++..=..-|..-+....-.. ..=-.+=.....++++|+.++.++..||
T Consensus 792 ~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 792 LEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556667777888999999999999999876666665554221100 0112233456788999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 002819 687 QKVAELHHQLNQQRQ 701 (876)
Q Consensus 687 ~~v~~l~~~l~~~~~ 701 (876)
.++.+|-.+|--.-.
T Consensus 872 ~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 872 IKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHhHH
Confidence 999999887765443
No 187
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.95 E-value=70 Score=33.35 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=52.2
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 002819 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (876)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~---~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~ 662 (876)
.+--.+.+|+.++...--.+..|++.+..... .+...+..|+..+..|...|.+-......|..-+.
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~---------- 154 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ---------- 154 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34456778888886655555556655554444 44556777888999999988888888877776554
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
.|-.+..++|+.+.+|+++=.+|=.++-+..
T Consensus 155 -------~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 155 -------ALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999999888888766665443
No 188
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=64.10 E-value=0.16 Score=57.04 Aligned_cols=121 Identities=25% Similarity=0.352 Sum_probs=79.2
Q ss_pred HHhHhhhhhHHHHH---HHHHHhhhhhhHhHhHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002819 583 AIQRLEITKNDLRH---RIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (876)
Q Consensus 583 ~~~~~~~~~~~~~~---~~~~~~~~n~~~q~~~~~rk~~~~~~r~~---LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (876)
..+-|++.+.+|+- +.....-+||.|--.+|.++++|+.|..+ |-.--.+|..+|-.|+.--+.|-.+=++-.|
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 34556777777764 44667789999988899999999988644 5556678889999998755544443332222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCC
Q 002819 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ-QRQHHYGS 706 (876)
Q Consensus 657 ~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~-~~~~~~~s 706 (876)
-+....-+..-.+.| +-+-|.+|-+|+|+|..|+..|.- +|..++.|
T Consensus 499 -splaqgkdayELEVL--LRVKEsEiQYLKqEissLkDELQtalrDKkyaS 546 (593)
T KOG4807|consen 499 -SPLAQGKDAYELEVL--LRVKESEIQYLKQEISSLKDELQTALRDKKYAS 546 (593)
T ss_pred -CccccCcchhhHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 111122222222322 456799999999999999998864 34434433
No 189
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=63.90 E-value=5.4 Score=45.47 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=63.4
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCC-----CCCcceeeeeCcEEeCCCcceeeccCCceEEE
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-----QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p-----~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
.|-+-|||-.+-.+.+...|+..+++|+...|.+|.+-+.... .... ..+.-+.+.-.+... .+...-...|.
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~y-pLvaTRLvhsg~~~~-s~~~g~~lsFa 368 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTY-PLVATRLVHSGSGKG-SVIKGLTLSFA 368 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhh-hhhhhhheecCCCCC-CCcCCceEEEE
Confidence 5667797765555667888999999999999999998766531 1000 001111111111111 01111223455
Q ss_pred EecCCCCC-ceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 93 LFPDGRDG-RAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 93 It~~~~~g-Rty~LqAdSeeE~~eWI~AIr~al 124 (876)
+...++.| .+|+|.++|..|+-.|..+|-.-.
T Consensus 369 ~RtGTrqGV~thlfrvEThrdLa~WtRslVqGc 401 (506)
T KOG3551|consen 369 TRTGTRQGVETHLFRVETHRELAAWTRSLVQGC 401 (506)
T ss_pred EecccccceEEEEEEeccHHHHHHHHHHHHHHH
Confidence 54444444 599999999999999998875543
No 190
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=63.76 E-value=13 Score=44.79 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceee----eeCcEEeCCCcc-------eeeccCCceEEEEec-CCCCCc
Q 002819 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGS-------VVVREDKKLLTVLFP-DGRDGR 101 (876)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i----~Lg~I~L~~~~s-------v~~~~~Kk~~fvIt~-~~~~gR 101 (876)
+...+..|+.|-+..|.+-|-+.... +.+ +...+.+..+.. .......++.|.++. .+.+++
T Consensus 496 k~~~~~vylfLFnD~Llitk~k~~~~------f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~ 569 (695)
T KOG3523|consen 496 KRLSKTVYLFLFNDLLLITKKKSEGS------FQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGR 569 (695)
T ss_pred ccccceeeeeeecceeeEeeecCCCc------eEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCC
Confidence 34456788888888888877543321 111 111122222221 000123456777765 233343
Q ss_pred --eEEEEeCCHHHHHHHHHHHH
Q 002819 102 --AFTLKAETSEDLYEWKTALE 121 (876)
Q Consensus 102 --ty~LqAdSeeE~~eWI~AIr 121 (876)
.|+|+|+++.|+.+||.|+.
T Consensus 570 ~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 570 QTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ceeeeecCCchHHHHHHHHhcC
Confidence 89999999999999999986
No 191
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.45 E-value=35 Score=30.04 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=39.6
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 002819 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~----------~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
++||+.+..||.++.-=.+.|++-|..+..=.. ..++.=..|..+|+.|+++|++
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998778888887765443221 1233344588999999998765
No 192
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.57 E-value=82 Score=41.90 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=54.4
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 002819 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVS-RLQEQLQAERDLRAALEVGLSMSSGQF 658 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~-~Lq~qL~~E~~l~~~Le~al~~~~~~~ 658 (876)
-+..+++|+......+.++.++ .+.++....+++...++.-.+|++++. +++.++++=..-+..|..++..-...+
T Consensus 382 y~~~~~~l~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 458 (1201)
T PF12128_consen 382 YNKLKQKLEEAFNRQQERLQAQ---QDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQL 458 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777666655555544 333344444444444444444444443 222222221222222222222111122
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 659 SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 659 ~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
.. |..+.++..+++.++.++....+++.....++.+.+
T Consensus 459 ~~----~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 496 (1201)
T PF12128_consen 459 KN----PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQ 496 (1201)
T ss_pred hC----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 333457888888888887776666665555544443
No 193
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.45 E-value=62 Score=40.84 Aligned_cols=100 Identities=23% Similarity=0.328 Sum_probs=60.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~ 660 (876)
+...++|+..|.+|...+++--.. ++ .++-+=.++|+.+..||.+|.-=.....++|..|.....
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~-------lE----~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e---- 659 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQ-------LE----SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKE---- 659 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 345566666666666655532222 22 222233578999999999999999999999998863311
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.-+.+-.-+..+|+++..|-.+|..|..+|-.+|.
T Consensus 660 ------~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~ 694 (769)
T PF05911_consen 660 ------SYESLETRLKDLEAEAEELQSKISSLEEELEKERA 694 (769)
T ss_pred ------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122222334566666666666666666666655
No 194
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.99 E-value=43 Score=40.42 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 594 ~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
||.++-+--|++.-|+.. ...|.+....|+.+|.+|+.+|+.++.-..-|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~----~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKE----NEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554434444444432 223333334555555555555555444444333
No 195
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.96 E-value=44 Score=28.80 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
+++|=++...+..+|+++|.+|++++.+
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667788899999999999999875
No 196
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.39 E-value=76 Score=29.66 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=51.0
Q ss_pred HhHhHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRK--QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARL 685 (876)
Q Consensus 608 ~q~~~~~rk--~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~L 685 (876)
+..++.+|. ...-+.=.+|-++...|+.+++.=+.-|..+...+......- ..+.+|++++..+=.++..|
T Consensus 14 v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-------~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 14 VRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-------EDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-------CCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-------ccHHHHHHHHHHHHHHHHHH
Confidence 344455552 233344445555555555555555555666666553221100 45678888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 002819 686 KQKVAELHHQLNQQ 699 (876)
Q Consensus 686 e~~v~~l~~~l~~~ 699 (876)
|.++..+..+|...
T Consensus 87 e~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 87 EEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777654
No 197
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.39 E-value=1.9e+02 Score=34.74 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
|.....|-.+|+-++.++..|+..+.++..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666664433
No 198
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.15 E-value=1.8e+02 Score=30.99 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=26.1
Q ss_pred ccccCcccCCCCc-ccCCCChhHHHHHhHhhhhhHHHHHHHHHHhhhhhhH
Q 002819 559 FWGRSNARKTSSV-ESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAIL 608 (876)
Q Consensus 559 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 608 (876)
++|....++..+. |.|+---|-| +=|+-...-|..||..|+..||.-
T Consensus 7 ~FG~~k~~~~~t~~eaI~kLrEte---emL~KKqe~Le~ki~~e~e~~A~k 54 (221)
T KOG1656|consen 7 LFGGMKQEAKPTPQEAIQKLRETE---EMLEKKQEFLEKKIEQEVENNARK 54 (221)
T ss_pred HhCcccccCCCChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665554 3333222211 112334456888999998877653
No 199
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=58.76 E-value=7.5 Score=46.37 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=30.1
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+||+|+.. .|.++.|.|.+.+|++.||+||+.-+-
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 48888753 489999999999999999999998763
No 200
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=58.73 E-value=2.1e+02 Score=33.17 Aligned_cols=82 Identities=27% Similarity=0.462 Sum_probs=59.1
Q ss_pred CCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-ccCCceEEEEecCCCCCceEEEEeCCHHHH
Q 002819 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (876)
Q Consensus 35 k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~ 113 (876)
..|++-|||+....+-||.+........ --+.|+|..|+.+.. ...+.+-|.|... +.+|+|.|-+.-..
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~------L~~~~~LR~C~~v~e~a~q~nY~~~i~~~---~~~~tL~~~~s~Ir 103 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEADE------LDGEIDLRSCTDVTEYAVQRNYGFQIHTK---DAVYTLSAMTSGIR 103 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccc------CCccccHHHHHHHHHHHHHhccceeeccc---chhhhhHHHHHHHH
Confidence 3499999999999999999876543111 224477777766422 2345555666433 48999999999999
Q ss_pred HHHHHHHHHHHh
Q 002819 114 YEWKTALELALA 125 (876)
Q Consensus 114 ~eWI~AIr~al~ 125 (876)
..|+.|+++...
T Consensus 104 ~~~~~A~~kT~~ 115 (593)
T KOG4807|consen 104 RNWIEALRKTVR 115 (593)
T ss_pred HHHHHHHHhccC
Confidence 999999997653
No 201
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=58.23 E-value=1.6e+02 Score=34.72 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=28.3
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (876)
Q Consensus 609 q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (876)
++.+..|...++.....+++.+..++.+++.=..+..+++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555666777777777777777777777666666666643
No 202
>PLN02372 violaxanthin de-epoxidase
Probab=57.61 E-value=32 Score=39.90 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.0
Q ss_pred CChhHHHHHhHhhhhhHHHHHHHHHHh
Q 002819 576 SSGEEELAIQRLEITKNDLRHRIAKEA 602 (876)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (876)
.|+-+--+++|||.+-.+....|.|||
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e~ 381 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKEA 381 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 455566679999999999999999883
No 203
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.81 E-value=2e+02 Score=28.13 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHHHHhHhhhhhHHH--HHHHHHHhhhh----hhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 580 EELAIQRLEITKNDL--RHRIAKEARGN----AILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~--~~~~~~~~~~n----~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.+....++...+.|| |.+|+++|..| -+++|..-..=..+++.-..++.++..|+..++
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665 34567777766 233333322222333333334444444444443
No 204
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=56.70 E-value=73 Score=32.05 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=53.3
Q ss_pred EEEEEEEeCCeeeEecCCCCCCCCCCc--------c-------eeeeeCcEEeCCCcceeeccCCceEEEEec-----CC
Q 002819 38 KKRWFILTRTSLVFFKNDPSALPQRGG--------E-------VNLTLGGIDLNNSGSVVVREDKKLLTVLFP-----DG 97 (876)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p~~~~--------e-------v~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~-----~~ 97 (876)
.---||.+.--..+||+....+.+-++ + ..++.....+..... ...+..+.+.|+. .+
T Consensus 50 e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~--ad~e~~~vwEliH~kSe~eg 127 (160)
T cd01255 50 ELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSA--ADMESNFLWELIHLKSELEG 127 (160)
T ss_pred eEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCC--cCcccceEEEEEeecccccC
Confidence 346788888888888876554432211 0 012222222222111 2234556666543 33
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 98 ~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+..++|.||+.+.+..+..+..|+..+.
T Consensus 128 RpE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 128 RPEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred CCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999885
No 205
>PRK09039 hypothetical protein; Validated
Probab=55.65 E-value=1.8e+02 Score=33.29 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=11.4
Q ss_pred HHhHhhhhhHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRIAK 600 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~ 600 (876)
.|..++..=.+|+.+|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 455666666667777754
No 206
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.62 E-value=1.5e+02 Score=31.22 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~ 661 (876)
..|..|-.--.+++.+...--|.=+.+++- -+.|.+==..++++|..|+++|..-..-..+|..+-.+-
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl------- 95 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL------- 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345555555555555544333332333332 233334444688999999999998888888777643311
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
..+-.+.+.|=-|-.+|+.-+.+|+++-.+|+.
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233334444444444444444444444443
No 207
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=55.61 E-value=73 Score=35.76 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=50.9
Q ss_pred hHhhhhhHHHHHHHH-----------HHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002819 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (876)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (876)
.+||..+..|++||. .-|+||..|++.+.= =..|..|+.+|.++|.+-...-..
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L--------~~~L~~eI~~f~~~l~~~~~~~e~------- 109 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL--------TKDLRREIDSFDERLEEAAEKEEL------- 109 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 899999999999992 568999999999762 224555666666655543321111
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (876)
Q Consensus 654 ~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (876)
+..-+.--++|..+|.++..|=..+++
T Consensus 110 -----------~~~~~~~~~~i~~V~~~ik~LL~rId~ 136 (302)
T PF05508_consen 110 -----------SKSSENQKESIKKVERYIKDLLARIDD 136 (302)
T ss_pred -----------ccCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 111123345666677776666555554
No 208
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.02 E-value=1.7e+02 Score=37.33 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=54.6
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~ 658 (876)
+=|..|++||..+.+++.+..+ =+.+...+++.+..+.+.+..|+++-.++.+++++| .+.+|+.|-.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~----~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--a~~~l~~a~~------ 584 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEE----AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE--AQQAIKEAKK------ 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------
Confidence 5677889999888888776542 233555667777777778888888888777777766 4466666543
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 002819 659 SSSRGMDSKTRAELEEIAL 677 (876)
Q Consensus 659 ~~~~~~p~~~~~ll~eia~ 677 (876)
.++++|.++-.
T Consensus 585 --------~~~~~i~~lk~ 595 (782)
T PRK00409 585 --------EADEIIKELRQ 595 (782)
T ss_pred --------HHHHHHHHHHH
Confidence 45677777753
No 209
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.00 E-value=1.2e+02 Score=39.90 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
+..-..+..+|.+||.+|+.|++-|..+.+-|. . ++-..+--++|.....++.++..++.++..+
T Consensus 748 ~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-s--------------q~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~ 812 (1317)
T KOG0612|consen 748 RRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-S--------------QEQEVNTKMLEKQLKKLLDELAELKKQLEEE 812 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-h--------------HHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445888999999999999999999998775 1 2323333788899888888888888999888
Q ss_pred HhhhcCCccc
Q 002819 700 RQHHYGSLSD 709 (876)
Q Consensus 700 ~~~~~~s~~~ 709 (876)
...-.|.-.+
T Consensus 813 ~~q~~~~~~~ 822 (1317)
T KOG0612|consen 813 NAQLRGLNRS 822 (1317)
T ss_pred HHHhhccccc
Confidence 8766665543
No 210
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=54.65 E-value=13 Score=44.47 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCCCCCCCceEEEEeeEee-ecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcc--------
Q 002819 10 RPRPGASNTVFKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-------- 80 (876)
Q Consensus 10 ~~~~~~~~~VvKeG~L~l~-KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~s-------- 80 (876)
++..+.+++..|+||+.-- .+-. --||.|..|+..++..|.+..... -...|.|..+.+
T Consensus 404 khtkRksst~~kEGWmvHyt~~d~---lRkrHYWrldsk~itlfqn~s~~r---------yYkeIPLsEIl~v~~~~~~~ 471 (888)
T KOG4236|consen 404 KHTKRKSSTKLKEGWMVHYTSKDN---LRKRHYWRLDSKCITLFQNESTNR---------YYKEIPLSEILSVSSNNGFS 471 (888)
T ss_pred ccccccchhhhhcceEEEEechhh---hhhhhhheeccceeEeeecCCCce---------eEEeecHHHhheeeccCCcc
Confidence 3444567788999976411 1111 125556678888888887766542 112233322222
Q ss_pred eeeccCCceEEEEecCCCCCceEEEEeCC------------HHHHHHHHHHHHHHHh
Q 002819 81 VVVREDKKLLTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELALA 125 (876)
Q Consensus 81 v~~~~~Kk~~fvIt~~~~~gRty~LqAdS------------eeE~~eWI~AIr~al~ 125 (876)
.+......+||.|... .+.||..++ ...+..|-.||+.++.
T Consensus 472 ~vp~~~~phcFEI~T~----~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 472 LVPAGTNPHCFEIRTA----TTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred cCCCCCCCceEEEEee----eEEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 2233456689998753 355555555 4558899999999986
No 211
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.56 E-value=91 Score=38.93 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 673 EEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
++|..+-+-...|++++..|..++.|
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555554433
No 212
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=53.45 E-value=38 Score=29.40 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 628 QDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 628 qeV~~Lq~qL~~E~~l~~~Le~al~~-~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
|-++.|+++|+.|..++...|+.+.. ... + .. =++.++..+..-+++|..|+.+|..-..
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~----------~--~~--~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTD----------K--KK--VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------H--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccC----------c--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999887752 110 0 00 2345566666677777777777765444
No 213
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.70 E-value=1.9e+02 Score=34.64 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
+..+..|+....+|+.++.+--..=+.++...++ ...+..+-.+|++.+..++..|..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666766665433333333333332 333344444455555555555443
No 214
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=52.34 E-value=1.7e+02 Score=33.85 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=36.7
Q ss_pred HHHHHhHhhhhhH-----HHHHHHHHHhhhh-hhHhHhHHHhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 002819 580 EELAIQRLEITKN-----DLRHRIAKEARGN-AILQASLERRK-------QALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 580 ~~~~~~~~~~~~~-----~~~~~~~~~~~~n-~~~q~~~~~rk-------~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
.++..|+||..+. +...+..|||-+- |.|||---|+- .+|+..|-.|+.+.++.+++|+.
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777665 5556666666543 35776544443 45666677777777766665543
No 215
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=52.25 E-value=2.1e+02 Score=37.18 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 672 LEEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 672 l~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
-.++.-++.++..++.++..+..+|.
T Consensus 914 ~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 914 RRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 216
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.94 E-value=35 Score=40.92 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
++-.+..++..++.-+|.++..|++++..|+.+|..-.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456677778888888888888888888888876553
No 217
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=50.83 E-value=2.4e+02 Score=36.70 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=10.4
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 002819 835 TRLDFFKERRSQLMEQLH 852 (876)
Q Consensus 835 ~rl~f~kerrsq~~~~~~ 852 (876)
.|++|+++++.-|.+.+.
T Consensus 993 er~~~l~~q~~dL~~~~~ 1010 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKE 1010 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666655555443
No 218
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.61 E-value=1.5e+02 Score=29.18 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 002819 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (876)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~ 664 (876)
+.|..+|.+|..||. .|..+=.+..+.-.+.+.||..++.-+.
T Consensus 57 ~~l~~tKkhLsqRId-----------~vd~klDe~~ei~~~i~~eV~~v~~dv~-------------------------- 99 (126)
T PF07889_consen 57 ESLSSTKKHLSQRID-----------RVDDKLDEQKEISKQIKDEVTEVREDVS-------------------------- 99 (126)
T ss_pred HHHHHHHHHHHHHHH-----------HHHhhHHHHHHHHHHHHHHHHHHHhhHH--------------------------
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELH 693 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (876)
..=.+|..+...|..||.|+.+|.
T Consensus 100 -----~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 100 -----QIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHh
No 219
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.59 E-value=3.5e+02 Score=30.62 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 616 KQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 616 k~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
...+.++..+|+.++.+|+....+
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777788888877776553
No 220
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=49.31 E-value=1.3e+02 Score=33.04 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
++|.-+|++|..|+..|..|+.+...-|.
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 45666677777777777766666553333
No 221
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.91 E-value=2.7e+02 Score=28.61 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=23.1
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (876)
+|..-+..-..++..+..|+.||++|+.+|.+|+.
T Consensus 67 l~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 67 LQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333445666677788888888888888765
No 222
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.65 E-value=6.6e+02 Score=31.71 Aligned_cols=10 Identities=50% Similarity=0.454 Sum_probs=5.3
Q ss_pred HHHHhHhhhh
Q 002819 581 ELAIQRLEIT 590 (876)
Q Consensus 581 ~~~~~~~~~~ 590 (876)
..+|.|||+.
T Consensus 417 ~~a~~rLE~d 426 (697)
T PF09726_consen 417 PDAISRLEAD 426 (697)
T ss_pred hHHHHHHHHH
Confidence 3455566644
No 223
>PRK09039 hypothetical protein; Validated
Probab=48.36 E-value=2.9e+02 Score=31.65 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE 613 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~ 613 (876)
+.++.+|+.-=.+|-.-+.-|-..++-||..+.
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555555555555555555554
No 224
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.30 E-value=2.1e+02 Score=32.36 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (876)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~ 645 (876)
++.+..+.....+||.+.++|+++-.+-...+.
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666655544443333333
No 225
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=48.23 E-value=3.7e+02 Score=29.55 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 002819 666 SKTRAELEEIALAE----------ADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 666 ~~~~~ll~eia~~E----------~~v~~Le~~v~~l~~~l~~ 698 (876)
.+...-|+-+|.|| +.|-+|+.+..+|++.|.-
T Consensus 140 qrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 140 QRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555 4577888888888887753
No 226
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=47.74 E-value=3.7e+02 Score=32.82 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~ 619 (876)
+..+++.+--+.+|......=-+.+..||..+++-+..|
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666444333333444444444444444
No 227
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=47.53 E-value=40 Score=33.89 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC-CC---CCCCCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 629 DVSRLQEQLQAERDLRAALEVGLSMSSG-QF---SSSRGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 629 eV~~Lq~qL~~E~~l~~~Le~al~~~~~-~~---~~~~~~p~~~~~ll~eia--~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
||+-|-+||+.|... .|.||..-.. .+ +-.-.|-.|--+.=++|+ .-|.-|.-=|.++.+|+..|.+|+..
T Consensus 39 eieiL~kQl~rek~a---fe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~c~kqed~LngKe~~I~eLk~~l~sQK~~ 115 (153)
T PF15175_consen 39 EIEILSKQLEREKLA---FEKALGSVKSKVLQESSKKDQLITKCNEIESEIICHKQEDILNGKENEIKELKQRLASQKQN 115 (153)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchHHHHhhhHHHHHH
Confidence 788899999998753 3444431100 00 000112222222223455 44555555578899999999999997
Q ss_pred -hcCCccchh
Q 002819 703 -HYGSLSDAC 711 (876)
Q Consensus 703 -~~~s~~~~~ 711 (876)
+...+.|..
T Consensus 116 ~Hk~qlsdl~ 125 (153)
T PF15175_consen 116 FHKRQLSDLR 125 (153)
T ss_pred HhhccchhhH
Confidence 677776654
No 228
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=47.51 E-value=2.9e+02 Score=36.10 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=7.5
Q ss_pred cHHHHHHHHHHHhcCC
Q 002819 181 PSFLEKALRFLEKFGT 196 (876)
Q Consensus 181 P~iL~~~i~~Le~~Gl 196 (876)
|.-+.++..++...|+
T Consensus 116 ~~~~~~~~~~l~~~~~ 131 (1164)
T TIGR02169 116 RVRLSEIHDFLAAAGI 131 (1164)
T ss_pred cccHHHHHHHHHHcCC
Confidence 3334444555555544
No 229
>PRK02224 chromosome segregation protein; Provisional
Probab=47.30 E-value=2.6e+02 Score=35.76 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHhHhhhhhHHHHHHH---HHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
.|..++..+..|+..| .+++...+...+.++.++..+..+...|++....++.+|.+
T Consensus 280 ~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~ 339 (880)
T PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444332 22222223334455555556666666666666555544443
No 230
>PF14992 TMCO5: TMCO5 family
Probab=47.25 E-value=1e+02 Score=34.26 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
...-.+.+-+++++|-+|.+++++|......+.
T Consensus 112 q~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 112 QFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467788888888888888888875555433
No 231
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.11 E-value=1e+02 Score=32.16 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (876)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (876)
..-.++|+++..|+.++..|+.++..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999998888888888877443
No 232
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=46.66 E-value=3.1e+02 Score=30.53 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=20.8
Q ss_pred hHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (876)
Q Consensus 607 ~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (876)
.|+...+...+.+.+....+|..+..|+++|+.|+.
T Consensus 222 ~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 222 KLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555566666666666666666654
No 233
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.65 E-value=5.3e+02 Score=32.47 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=58.4
Q ss_pred CChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhcCCcc------------------chh
Q 002819 664 MDSKTRAELEEIALAEAD--------------VARLKQKVAELHHQLNQQRQHHYGSLS------------------DAC 711 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~--------------v~~Le~~v~~l~~~l~~~~~~~~~s~~------------------~~~ 711 (876)
+.+..++|..+++.+|.+ |..|+.++.+|+.++.++...-..+.. +..
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~ 365 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLK 365 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888864 566777888888888776664333221 111
Q ss_pred hhhhcccccchhhhhcccccchhhhhhhhhhhhhhh----hhcccccchhhccccccCCCCCC
Q 002819 712 DRYQNVQNHNSQQRFLQQDFDSTLAFVNHERKQRTE----ENLLGADWRNIKGQGLATGSSNR 770 (876)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 770 (876)
.+-...+..+.+...++.+.++.-..-.-.-.+..+ ......+||.|-....+..+++|
T Consensus 366 ~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~~~~~~~vi~~A~~P~~P~~P 428 (754)
T TIGR01005 366 AASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQNYVPVDARVASPASVPSEPYFP 428 (754)
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEeccCcCCCCCCCC
Confidence 111223333444445555555544333332222222 45667788887765555544444
No 234
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.48 E-value=4.7e+02 Score=29.60 Aligned_cols=48 Identities=27% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ 636 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~q 636 (876)
+.+.+.+|.++.|.+.-..++.+-|.++ ..++++..+|+.+|..|++.
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~--------~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIK--------PKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555444444444443 34555666666666665543
No 235
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.47 E-value=2.1e+02 Score=30.40 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
+|-+|-+.|.+++..+.+++..|..++...+
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655554443
No 236
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.21 E-value=3.5e+02 Score=35.41 Aligned_cols=115 Identities=13% Similarity=0.181 Sum_probs=70.7
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 002819 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~ 659 (876)
||-+++.|-..|..|...|.+=.+. ..-=++++..-..+..++.-+.-|+..++..|.....=-.-++..+.
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~-~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~------- 721 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKR-RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID------- 721 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 6888999999999999999754431 11122333334444444444555555555444322211111222222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002819 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (876)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~ 705 (876)
.++++.-++..+|-..|.+.-.|+.++..+...+|..=-.+-|
T Consensus 722 ---~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig 764 (1141)
T KOG0018|consen 722 ---EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIG 764 (1141)
T ss_pred ---hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3556666888899999999999999999988888876554444
No 237
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=46.17 E-value=3.3e+02 Score=36.29 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=13.3
Q ss_pred HHHhhhhhhHHHHHHHHHHH
Q 002819 831 VELTTRLDFFKERRSQLMEQ 850 (876)
Q Consensus 831 ~~lt~rl~f~kerrsq~~~~ 850 (876)
-++.-|++||+..+..|.+.
T Consensus 973 e~~~~r~~~l~~~~~dl~~a 992 (1163)
T COG1196 973 EEVEERYEELKSQREDLEEA 992 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776665544
No 238
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.11 E-value=2.7e+02 Score=38.95 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
.++-++++.+.-.|..|+.++.+|...|-.+|+.
T Consensus 1086 e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1086 EDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555443
No 239
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.82 E-value=3.1e+02 Score=27.23 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002819 677 LAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 677 ~~E~~v~~Le~~v~~l~~~l~ 697 (876)
..+.|+-+.|.++..|+.+|.
T Consensus 130 q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666654
No 240
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=45.31 E-value=29 Score=41.77 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCCcEEEEEEEeC---CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCH
Q 002819 34 WKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (876)
Q Consensus 34 ~k~WKKRWFVL~~---~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSe 110 (876)
.+.|+..|++.-. ..++.|....+... ...+++.++.+..-+.+ ...+..+.|.++.. ...|+|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a----~~~iPl~~~~v~~pe~~-~~~D~~~~~k~~~s---~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRA----QATIPLPGVEVTIPEFV-RREDLFHVFKLVQS---HLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCcccccc----ccccccCccccCCCccc-ccchhcchhhhhhh---cceeeeccCCH
Confidence 4679999998743 47888888777542 23456666666543322 12344455666543 46899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 002819 111 EDLYEWKTALELALA 125 (876)
Q Consensus 111 eE~~eWI~AIr~al~ 125 (876)
+-.+.|+..+..|..
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988764
No 241
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.17 E-value=2.7e+02 Score=33.80 Aligned_cols=122 Identities=18% Similarity=0.253 Sum_probs=76.7
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002819 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~---~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (876)
-|--|+|-.-.|.++|+-|. .||-..+.+-+ ..+|.|..+++--.+|.++.++=+.-+..|++.+++-
T Consensus 572 rEqYi~~~dlV~~e~qrH~~-------~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L-- 642 (741)
T KOG4460|consen 572 REQYILKQDLVKEEIQRHVK-------LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL-- 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--
Confidence 34556666666666666553 23333333333 3355566777777888888888888888888766521
Q ss_pred CCCCC-CCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchh
Q 002819 657 QFSSS-RGMDSKTRAEL---EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDAC 711 (876)
Q Consensus 657 ~~~~~-~~~p~~~~~ll---~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~~~ 711 (876)
+..+ +++|+-+.+.+ .|+-.+-.++--|-.-+..++.....||.+...+..+..
T Consensus 643 -~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~ 700 (741)
T KOG4460|consen 643 -LHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALP 700 (741)
T ss_pred -HhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1222 56676666555 466666666777777777777788888876666555443
No 242
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.10 E-value=2.9e+02 Score=33.95 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=59.1
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~ 660 (876)
+-.|.+|+.+=..|+ .+|..|++.++.-|......+..|++=-.+....++..+
T Consensus 421 ~~~i~~~~~~ve~l~-------~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~r------------------- 474 (652)
T COG2433 421 EKRIKKLEETVERLE-------EENSELKRELEELKREIEKLESELERFRREVRDKVRKDR------------------- 474 (652)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------------
Confidence 334455555444444 467788888887776665555554444443333333333
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002819 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (876)
Q Consensus 661 ~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (876)
+.+++-.+|..||-++.+=+..|..|...|.+-+.-+
T Consensus 475 ------ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 475 ------EIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888999998888888999999998888543
No 243
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=45.10 E-value=3.6e+02 Score=27.62 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~ 619 (876)
..+..++..-+.|+..+..+-+.++.++..++.-+...
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555444433
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.83 E-value=1.2e+02 Score=36.98 Aligned_cols=104 Identities=23% Similarity=0.341 Sum_probs=70.4
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002819 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER------RLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~------r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (876)
-+.-++||+.--.+|+..|-.-=+.+..|-+.|++=+...+.. =.+++.++.+|++.|+++......|++=|..
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556889999999999998777788888888887665544322 2348899999999999999999888876643
Q ss_pred CC--CCC-CCCCCCChhHHHHHH--HHHHHHHHHH
Q 002819 654 SS--GQF-SSSRGMDSKTRAELE--EIALAEADVA 683 (876)
Q Consensus 654 ~~--~~~-~~~~~~p~~~~~ll~--eia~~E~~v~ 683 (876)
-. -.+ .+.-..|-++-+.+. .|+.+|++..
T Consensus 507 l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~g 541 (652)
T COG2433 507 LRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYG 541 (652)
T ss_pred HHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhc
Confidence 21 111 122445555544433 5555555533
No 245
>PLN02678 seryl-tRNA synthetase
Probab=44.49 E-value=65 Score=38.18 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 621 ~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
++-.+|.++-.+|+.+++.=+.-|..+...+.... .-...+.+|++++..|-++|..||.++..+..+|.+..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-------~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-------IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555553200 00134567888888888888888888888888888765
Q ss_pred h
Q 002819 701 Q 701 (876)
Q Consensus 701 ~ 701 (876)
.
T Consensus 106 ~ 106 (448)
T PLN02678 106 K 106 (448)
T ss_pred H
Confidence 4
No 246
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=44.43 E-value=3.1e+02 Score=29.60 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=28.5
Q ss_pred hhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 603 RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (876)
Q Consensus 603 ~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~ 644 (876)
|-...||+-..+|-...+.-+..+|+.+..++..++.+..-+
T Consensus 45 ~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~ 86 (247)
T PF06705_consen 45 KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEK 86 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777777777777777777666544
No 247
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=44.29 E-value=4.7e+02 Score=30.46 Aligned_cols=94 Identities=27% Similarity=0.302 Sum_probs=61.5
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 002819 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (876)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~---~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~ 662 (876)
|.|..-..|+..|..=+++|+-||..-..-.+.+ .+-+..-++|-..-..|||.|-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec--------------------- 340 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC--------------------- 340 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4555566788999999999999986532222222 2222222222222222333332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
..+++-.|+|=|.|..+--.|++++.+.+.+|-|.+..
T Consensus 341 --~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 341 --ARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567889999999999999999999999999888763
No 248
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.23 E-value=2.6e+02 Score=34.63 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=53.9
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~ 661 (876)
..|+.|+....+++.+|++--..=..++.. -..+.+....|+.++.+++++..+...+..+++.|
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 485 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQ----LETLKEAIEALRKTLDEKTKQKINAFELERAITIA----------- 485 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------
Confidence 367777777777777776322221222222 22334444455555555655555555555554442
Q ss_pred CCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 002819 662 RGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 662 ~~~p~~~~~ll~eia--~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
.+++++|.++. +.+.-+..||..+.+...+|.+.
T Consensus 486 ----~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 486 ----DKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23456666543 34444666777777777777654
No 249
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=44.19 E-value=2.3e+02 Score=28.00 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=40.3
Q ss_pred hhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002819 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARL 685 (876)
Q Consensus 606 ~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~L 685 (876)
..+++.++...++.......+++++..++++|+.+.. .++ +...++.-.|+...+.+ |
T Consensus 35 k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--------------~ls-----~~~~~~~~~~l~~~~~~---l 92 (158)
T PF03938_consen 35 KDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--------------TLS-----EEERQKRQQELQQKEQE---L 92 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------S-----SHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccc-----hhHHHHHHHHHHHHHHH---H
Confidence 3455556666666666666666666666666666533 011 33334444444444444 5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002819 686 KQKVAELHHQLNQQRQH 702 (876)
Q Consensus 686 e~~v~~l~~~l~~~~~~ 702 (876)
.+....+..+|.++++.
T Consensus 93 ~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 93 QQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666666654
No 250
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.64 E-value=2.8e+02 Score=31.65 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=52.7
Q ss_pred hhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 002819 603 RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADV 682 (876)
Q Consensus 603 ~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v 682 (876)
-+|+-||..|+.-++. .-+-|.|...|-..|.+++....+|..--+ .++..++.+=.+-| +-|
T Consensus 141 EEn~~lqlqL~~l~~e----~~Ekeeesq~LnrELaE~layqq~L~~eyQ---atf~eq~~ml~kRQ----------~yI 203 (401)
T PF06785_consen 141 EENQCLQLQLDALQQE----CGEKEEESQTLNRELAEALAYQQELNDEYQ---ATFVEQHSMLDKRQ----------AYI 203 (401)
T ss_pred HHHHHHHHhHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccchhhhHHHH----------HHH
Confidence 5688888888743332 334577788888888888887777765433 44554544333333 457
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002819 683 ARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 683 ~~Le~~v~~l~~~l~~~~~ 701 (876)
.+||.||.||-+++..--+
T Consensus 204 ~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 204 GKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888888776655444
No 251
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=43.49 E-value=1.5e+02 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=22.7
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
+.++.|..-+.+++..|++.+++|+++|..
T Consensus 81 ~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 81 NISSVDFEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888888888877653
No 252
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=43.42 E-value=1e+02 Score=29.14 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=43.2
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHh----HhHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHER----------RLALEQDVSRLQEQLQAERD 642 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q----~~~~~rk~~~~~~----------r~~LeqeV~~Lq~qL~~E~~ 642 (876)
|.-++.+=+++|.|||.==|-=++|= ...+.||-+..+. =-++|.|+..||.||..+.+
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~ld 73 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLD 73 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999986555555555 5678787776665 33589999999999877654
No 253
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.40 E-value=1.3e+02 Score=35.40 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.-.+|.++-.+|+.+++.=+.-|..+.+.+..... -...+.+|++++..|-+++..||+++..+..++.+...
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKR-------KGEDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555532100 01245689999999999999999999999998888765
No 254
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=43.30 E-value=1.6e+02 Score=28.18 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=4.5
Q ss_pred HhHhhhhhHHHHHHHH
Q 002819 584 IQRLEITKNDLRHRIA 599 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~ 599 (876)
-++||+.+++||++.+
T Consensus 4 ~~~l~as~~el~n~La 19 (107)
T PF09304_consen 4 KEALEASQNELQNRLA 19 (107)
T ss_dssp ----------HHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3578888888888873
No 255
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.74 E-value=3.2e+02 Score=36.09 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=43.8
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHh-----HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQ-----ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q-----~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~ 654 (876)
..++.|+.+-.+..|+ +++|.+ ..+ ..++++....++.+--|-+..++|.+++++.+.=...++.+...+
T Consensus 364 ~~~k~e~~~~~~~e~~-~~~kn~-~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 364 EVEKNEAVKKEIKERA-KELKNK-FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 3445555555555443 334422 222 234555556667777788888899999998888888888776544
No 256
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.11 E-value=2.8e+02 Score=37.42 Aligned_cols=122 Identities=11% Similarity=0.204 Sum_probs=65.9
Q ss_pred CcccCCCChhHHHHHhHhhhhhHHHHHHHHH---Hhhhh------hhHhHhHHHhHHHH----------HHHHHHHHHHH
Q 002819 570 SVESIDSSGEEELAIQRLEITKNDLRHRIAK---EARGN------AILQASLERRKQAL----------HERRLALEQDV 630 (876)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n------~~~q~~~~~rk~~~----------~~~r~~LeqeV 630 (876)
.+++++....+...|.|+...-.+|+.+|.. ++.+. .-||..+..-+..+ .+.+..++.++
T Consensus 780 ~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI 859 (1311)
T TIGR00606 780 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666777777777777777742 22211 22444433333322 44455677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 631 SRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 631 ~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
.+||.++.+-.+.+..|..++... ..|=+...+|-.+|+.+.++|..+++++..|...+..
T Consensus 860 ~~Lq~ki~el~~~klkl~~~l~~r-------~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~ 920 (1311)
T TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRR-------QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 777776666666666666655421 1233344455566666655555555555555544433
No 257
>PRK02224 chromosome segregation protein; Provisional
Probab=41.83 E-value=3.1e+02 Score=35.04 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=14.3
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHhhhc
Q 002819 829 ALVELTTRLDFFKERRSQLMEQLHNL 854 (876)
Q Consensus 829 ~l~~lt~rl~f~kerrsq~~~~~~~~ 854 (876)
-|-+-|+.||. .+|..+++-|+.+
T Consensus 816 ilDEp~~~lD~--~~~~~~~~~l~~~ 839 (880)
T PRK02224 816 ILDEPTVFLDS--GHVSQLVDLVESM 839 (880)
T ss_pred EecCCcccCCH--HHHHHHHHHHHHH
Confidence 35556666664 4566666666555
No 258
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=41.81 E-value=3.1e+02 Score=34.17 Aligned_cols=105 Identities=24% Similarity=0.224 Sum_probs=67.8
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ--ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~--~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (876)
++--+-+||--..+-|+.-.-.| .|- -|--|--|=+ .+.-.-.-|++|-.+|+++|.+|++--+-++.-+.
T Consensus 663 eE~~l~~rL~dSQtllr~~v~~e-qge--kqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~---- 735 (961)
T KOG4673|consen 663 EERSLNERLSDSQTLLRINVLEE-QGE--KQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYL---- 735 (961)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH-hhh--HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----
Confidence 34456677776666665554444 111 0111100000 01111234889999999999999987766655433
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002819 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (876)
Q Consensus 657 ~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (876)
.+=+||..++..++.||+.+..++..+.|+-+.-
T Consensus 736 -------------~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ 769 (961)
T KOG4673|consen 736 -------------AAQEEADTLEGRANQLEVEIRELKRKHKQELQEV 769 (961)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5567899999999999999999999988887743
No 259
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.59 E-value=92 Score=31.61 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=45.2
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----ALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~-----~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
..+..|+..-.+|+.++..--+.+..|++.|..-.. .+...-.+|+++++.|+.+|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888888888888888887776555 5577778899999999988875
No 260
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=41.53 E-value=3.2e+02 Score=33.41 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=64.5
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLSMSSGQ 657 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV-~~Lq~qL~~E~~l~~~Le~al~~~~~~ 657 (876)
+=+..|.||+....+++.+|..-+..|..==...-.+-+.+.++-.+|..|+ .-|+... +..+...|..+..
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~--~~~i~~~l~~a~~----- 83 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEI--ENEIQPQLRDAAE----- 83 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHH-----
Confidence 3467899999999999998887777776522223345567788888888888 4344333 3334555555443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 658 ~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
+.+.|-.|++..+.-+.-|| ++..++.+|.+-+
T Consensus 84 ---------e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 84 ---------ELQELKRELEENEQLLEVLE-QLQEIDELLEEVE 116 (593)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34455556665555555454 5666666664443
No 261
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.28 E-value=3.2e+02 Score=27.43 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=58.4
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 002819 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDL-RAALEVG 650 (876)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~---~~~r~~LeqeV~~Lq~qL~~E~~l-~~~Le~a 650 (876)
-++...++.|=..+..|...++-+.++-+-||+.+++-...+ .++-..||+.+..++.++.++..= |-+|.-+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 456677888888888999999999999999999887665544 566778999999999998877655 7777654
No 262
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=40.93 E-value=5.1e+02 Score=32.01 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 667 KTRAELEEIALAEADVARLKQKVA 690 (876)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~v~ 690 (876)
.++..+.+|..+..++-.++..+.
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555555553
No 263
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.55 E-value=1.8e+02 Score=29.99 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=57.2
Q ss_pred HHhHhhhhhHHHHHHHHHHh-hhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCC
Q 002819 583 AIQRLEITKNDLRHRIAKEA-RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA----LEVGLSMSSGQ 657 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~-~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~----Le~al~~~~~~ 657 (876)
....+++.=.+|+.-|..-- ..=+.|++..++=+..+..-+..|.+|+.+|+.-++-+.+++.. ....+...
T Consensus 52 ~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--- 128 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--- 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---
Confidence 34444444444444442111 11145667777777777788888888898888877777665542 11222211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (876)
Q Consensus 658 ~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~ 690 (876)
|-.=-..+-.||+-|..+|..++.++.
T Consensus 129 ------i~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 129 ------IQELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123456778889999888766643
No 264
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.47 E-value=3.7e+02 Score=35.96 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.5
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHhh
Q 002819 829 ALVELTTRLDFFKERRSQLMEQLH 852 (876)
Q Consensus 829 ~l~~lt~rl~f~kerrsq~~~~~~ 852 (876)
.+.++...+.-++.+|.+++++|+
T Consensus 896 ~~~~~~~~~~~~~~~~~~l~~~l~ 919 (1201)
T PF12128_consen 896 SVDERLRDLEDLLQRRKRLREELK 919 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888889999988888886
No 265
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.35 E-value=6.2e+02 Score=31.71 Aligned_cols=122 Identities=23% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHhHhhhhhHHHHHHHHHHh------hhhhhHhHhHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002819 582 LAIQRLEITKNDLRHRIAKEA------RGNAILQASLERRKQ------ALHERRLALEQDVSRLQEQLQAERDLRAA--- 646 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~------~~n~~~q~~~~~rk~------~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~--- 646 (876)
..||.||-.+..+-.++.+=+ .-+.+||.-+++=.. .+..+-+-||-++..|+.+|+....++.-
T Consensus 248 dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~ 327 (716)
T KOG4593|consen 248 DQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGS 327 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhc
Q ss_pred ----------------HHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002819 647 ----------------LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (876)
Q Consensus 647 ----------------Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (876)
=...|+....++..|..+|..+..+|.|.-.==+.+.-.+.++..|+-.|..--..+
T Consensus 328 ~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~ 400 (716)
T KOG4593|consen 328 LRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKR 400 (716)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
No 266
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=40.33 E-value=2.8e+02 Score=35.04 Aligned_cols=59 Identities=27% Similarity=0.356 Sum_probs=37.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 002819 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL-RAALE 648 (876)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l-~~~Le 648 (876)
+|-..|.++|.-+ +|+|-||. .+...+..|...|..++.||.+||+.+..++.+ +..|+
T Consensus 327 kltrqkadirc~L-lEarrk~e---gfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~ 386 (1265)
T KOG0976|consen 327 KLTRQKADIRCAL-LEARRKAE---GFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLE 386 (1265)
T ss_pred HHHHHHHHHHHHH-HHHHHhhc---chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444332 45555553 455566688888999999999999999876554 44333
No 267
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=40.21 E-value=6.9e+02 Score=29.49 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhcCCccchhhhhhcccccchhhhhcccccchhhhhhhhhhh
Q 002819 668 TRAELEEIALAEADVARLKQKVAELHHQLN----QQRQHHYGSLSDACDRYQNVQNHNSQQRFLQQDFDSTLAFVNHERK 743 (876)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (876)
+-.+-.-|-.|-+||.+|..++..-+.+-. |-|.+-. ..+ .....-|+-+++..+..-|+|-|.-.
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~---------~~r-een~rlQrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV---------DHR-EENERLQRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555667777777777777665443221 1121110 011 11122366677778888899999654
Q ss_pred hh
Q 002819 744 QR 745 (876)
Q Consensus 744 ~~ 745 (876)
.+
T Consensus 318 se 319 (552)
T KOG2129|consen 318 SE 319 (552)
T ss_pred hh
Confidence 44
No 268
>PRK03918 chromosome segregation protein; Provisional
Probab=40.18 E-value=4.8e+02 Score=33.20 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=10.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHH
Q 002819 830 LVELTTRLDFFKERRSQLMEQ 850 (876)
Q Consensus 830 l~~lt~rl~f~kerrsq~~~~ 850 (876)
+.+|..++.-+++....+-++
T Consensus 461 i~~l~~~~~~l~~~~~~l~~~ 481 (880)
T PRK03918 461 LKRIEKELKEIEEKERKLRKE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444433
No 269
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=40.17 E-value=67 Score=38.68 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=45.6
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHH---HHHHHHHHHHHHHHHHHHHHH
Q 002819 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~---~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
-|-+.|+||-.++.+=--+|-|||-.|+.+|++ |.++-.+||.|+++++..+..
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999988888999999999999884 678888899998888877644
No 270
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=39.64 E-value=4.4e+02 Score=27.05 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=55.5
Q ss_pred hhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--ChhHHHHHHHHHHHH
Q 002819 602 ARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM--DSKTRAELEEIALAE 679 (876)
Q Consensus 602 ~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~--p~~~~~ll~eia~~E 679 (876)
.+-+..||+.|.-.+.++.+.=.+|.+-..+.+...+.-...+..|..-+. ..++|++-.++ -...=.+..+++.+|
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~-gg~~f~i~~~~~~~~~r~~l~~~~~~~e 92 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT-GGAPFSIDEYLALRRYRDVLEERVRAAE 92 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777776666555555555554444444444444444444444333 12233322222 222335667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002819 680 ADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 680 ~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.++..|++.|..-+.+|...+.
T Consensus 93 ~~~a~l~~~l~~~~~~ia~~~r 114 (158)
T PF09486_consen 93 AELAALRQALRAAEDEIAATRR 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777765544
No 271
>PRK12704 phosphodiesterase; Provisional
Probab=39.55 E-value=5.4e+02 Score=31.24 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 002819 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLS 708 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~ 708 (876)
.+|.-.+.++..+++++..+..+..++-....|-+.
T Consensus 117 ~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~ 152 (520)
T PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLTA 152 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 345555566666666666666666665555555443
No 272
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.25 E-value=2.2e+02 Score=33.92 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
+++-.|+..|..++..|...+.+|..||.
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777888899999999999999988885
No 273
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.11 E-value=2.9e+02 Score=31.45 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 619 LHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
..+.+.-|+++|.+++++|.+ |..|...- ...|.+. +...+...+.-|+.|+.+++.+|.++..|
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr-----~~~~~~d----~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQ-----IKNKVFD----PKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788899988888865 33333221 1223222 11234455555555555555555554444
No 274
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.01 E-value=4.7e+02 Score=33.76 Aligned_cols=136 Identities=23% Similarity=0.330 Sum_probs=74.6
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHH------HHHHHH-----HHHHHHHHHHhhc
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRL------QEQLQA-----ERDLRAALEVGLS 652 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~L------q~qL~~-----E~~l~~~Le~al~ 652 (876)
|.-+|.+-.|||.+|.-- =|-...=..|--++=.|.+|-..||.+|..| ++||++ |.+||.-|+-+=+
T Consensus 426 ~d~aEs~iadlkEQVDAA-lGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g 504 (1243)
T KOG0971|consen 426 LDQAESTIADLKEQVDAA-LGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKG 504 (1243)
T ss_pred HHHHHHHHHHHHHHHHHh-hcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666321 1222222345556667777777788777654 566654 7788887776532
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhcccccchhhh
Q 002819 653 MSSGQFSSSRGMDSKTRAELEEIALAE-------ADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQQR 725 (876)
Q Consensus 653 ~~~~~~~~~~~~p~~~~~ll~eia~~E-------~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 725 (876)
-.++|..+|...- .+|.+.-+-|..|+.||..++....+|. ++++..|+-.+-.-
T Consensus 505 --------------~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sse----ees~q~~s~~~et~ 566 (1243)
T KOG0971|consen 505 --------------ARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSE----EESQQPPSVDPETF 566 (1243)
T ss_pred --------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHhcCCCCCchhhh
Confidence 1245555554444 4555555566667777777776555443 33444444433334
Q ss_pred hcccccchhhhhh
Q 002819 726 FLQQDFDSTLAFV 738 (876)
Q Consensus 726 ~~~~~~~~~~~~~ 738 (876)
..|+-|-.+-||.
T Consensus 567 dyk~~fa~skaya 579 (1243)
T KOG0971|consen 567 DYKIKFAESKAYA 579 (1243)
T ss_pred HHHHHHHHhHHHH
Confidence 4444455555554
No 275
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.87 E-value=5e+02 Score=32.90 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=48.0
Q ss_pred HHHHhhhhhhHhHhHHHhHHHHH----HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChh
Q 002819 598 IAKEARGNAILQASLERRKQALH----ERRLAL------EQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSK 667 (876)
Q Consensus 598 ~~~~~~~n~~~q~~~~~rk~~~~----~~r~~L------eqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~ 667 (876)
--+|-|.--.||..|||++.--+ +||.++ .+|.+ -|.||+=|+.-|.-|-+-.++-.-- =-++-.+
T Consensus 363 qEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE-kqRqlewErar~qem~~Qk~reqe~---iv~~nak 438 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE-KQRQLEWERARRQEMLNQKNREQEW---IVYLNAK 438 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHH
Confidence 34455555566777766554221 122221 12221 2445555555554443333221100 0113344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
-+.|=.|+..|-..+--|+++|.+.+..+.-++.+
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ 473 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTE 473 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence 45555666666666666777766666655555443
No 276
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=38.79 E-value=2.4e+02 Score=34.38 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG-------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~-------~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
...|..||+|+.+|+.++.+ ++.-++.+.....| .+...+.+-.+..=+...|+.+|.++..|..+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45688899999999888864 33333333221111 123345555666666677777777777777766666
Q ss_pred HHHHHHHH
Q 002819 693 HHQLNQQR 700 (876)
Q Consensus 693 ~~~l~~~~ 700 (876)
+.+|..-|
T Consensus 182 ~~~l~~~r 189 (546)
T KOG0977|consen 182 REELARAR 189 (546)
T ss_pred HHHHHHHH
Confidence 66665555
No 277
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.64 E-value=4.8e+02 Score=35.80 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
++-+++..+|.++..|++++.++...
T Consensus 380 eleeEleelEeeLeeLqeqLaelqqe 405 (1486)
T PRK04863 380 ENEARAEAAEEEVDELKSQLADYQQA 405 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554444444433
No 278
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.55 E-value=1.5e+02 Score=26.88 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 588 ~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
...+.++.++|+--+-+...++-.|-.=-.+-..-+..-|.||.+|+.+|+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477788888888888888888877766666666677788888888888753
No 279
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.45 E-value=1.9e+02 Score=33.74 Aligned_cols=53 Identities=36% Similarity=0.490 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
|-.++.-||.||++|+-.+.-||--|. -.+++-...++-++.|+-++.-+|+|
T Consensus 439 l~~ei~~L~eqle~e~~~~~~le~ql~-----------------~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 439 LVKEIQSLQEQLEKERQSEQELEWQLD-----------------DDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 666788899999999999999997664 55666666677777777777766643
No 280
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=38.32 E-value=4.3e+02 Score=30.06 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 673 EEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
.+++.+++++..++.++..++.+|
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444
No 281
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.15 E-value=4.3e+02 Score=31.44 Aligned_cols=128 Identities=19% Similarity=0.291 Sum_probs=79.2
Q ss_pred cCCCChhHHHHHhHhhhhhHHHHHHHHHHhhh-----hhhHhHhHHHhHH-------HHH-HHHHHHHHHHHHHHHHHHH
Q 002819 573 SIDSSGEEELAIQRLEITKNDLRHRIAKEARG-----NAILQASLERRKQ-------ALH-ERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~q~~~~~rk~-------~~~-~~r~~LeqeV~~Lq~qL~~ 639 (876)
-|+--.+-|+-.++|+..-..++.+|-.=.+- =+.||..+.=|+. +.+ .+-.+|||||.-+-++.+.
T Consensus 284 l~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~ 363 (521)
T KOG1937|consen 284 LIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIES 363 (521)
T ss_pred HHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566777888887777777666221110 1223333222222 011 2335699999998888888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 640 ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 640 E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
-..+++-|-++|+.-+-.++ --..-.-.+|+..+|--.++||.+.=..-.+|+.|++..-.
T Consensus 364 ~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 364 NEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred hHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888763211111 01122346788999999999999988888888888775543
No 282
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.08 E-value=87 Score=37.27 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=41.5
Q ss_pred ccCCCChhHHHHHhHhhhhh---HHHHHHHHHHhhhhhhHhHhHH---HhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~n~~~q~~~~---~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
.-||-..++-...-+|+... .+|+.+|+++ +..++ ++++.+.++=.+||.|+.+|+.|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665544 7888888876 34444 556666666778999999999998
No 283
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=37.84 E-value=24 Score=42.85 Aligned_cols=154 Identities=14% Similarity=-0.015 Sum_probs=93.0
Q ss_pred CCCCCCCcccccchHHHhhhcC-----CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHH-hhcC-CccCCCCC
Q 002819 157 DKRPVKSLVVGRPILLALEDID-----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-KTEFSADE 229 (876)
Q Consensus 157 ~k~~~k~~VFGvpL~~ll~~~~-----~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~-ld~G-~~~~~~~~ 229 (876)
...+.+..+|+ .|..+..... -.+.-..+|..+....+....|.|+.+|.. +..++.. .+.+ ++.+..+.
T Consensus 31 ~~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~e~e~~~~kie~~~d~ 107 (577)
T KOG4270|consen 31 VVFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPGAK--IDTLKEEEEECGMKIEQPTDQ 107 (577)
T ss_pred ccCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCcch--hhhhhchHHhhcCccccCcch
Confidence 34555566777 5544443311 135556788888888889999999999943 3344433 3333 36667778
Q ss_pred CccchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc
Q 002819 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH 305 (876)
Q Consensus 230 D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~ee----ri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~ 305 (876)
..+++.++++.+++.+ +|.++.-|+..+.......... ...+++. ...|..|+ +-+++.||... .
T Consensus 108 ~~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~ 176 (577)
T KOG4270|consen 108 RHADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----R 176 (577)
T ss_pred hhhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----h
Confidence 8899999999999998 6776665554443322221111 2334442 45677777 66666666554 3
Q ss_pred cCCCCcchhhHhhcccccC
Q 002819 306 ENRMTPSAVAACMAPLLLR 324 (876)
Q Consensus 306 ~NKMta~NLAi~FaP~Llr 324 (876)
.+.|.--+..-+|.++.-.
T Consensus 177 l~~e~Gl~eEGlFRi~~~~ 195 (577)
T KOG4270|consen 177 LLLEGGLKEEGLFRINGEA 195 (577)
T ss_pred hhhhcCccccceeccCCCc
Confidence 4445555555555555443
No 284
>PLN02320 seryl-tRNA synthetase
Probab=37.77 E-value=1.7e+02 Score=35.23 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
..+.+|++|+..|-.++..||+++..+..+|.+.-..
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQS 166 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888888888888776553
No 285
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.70 E-value=6.5e+02 Score=30.50 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002819 617 QALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL 637 (876)
+.+.++|.++|+++...+.+|
T Consensus 58 eE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667778877766655555
No 286
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.51 E-value=1.5e+02 Score=35.09 Aligned_cols=62 Identities=34% Similarity=0.404 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhHhHh---HHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 002819 587 LEITKNDLRHRIAKEARGNAILQAS---LERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLS 652 (876)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~q~~---~~~rk~~~~~~r~~LeqeV-~~Lq~qL~~E~~l~~~Le~al~ 652 (876)
.|..+++.|.-+ |-|-.||-+|.. +| |.+|.--++. |+|| +.|++||+.|+.+|.+++.-|.
T Consensus 501 ~eTll~niq~ll-kva~dnar~qekQiq~E--k~ELkmd~lr-erelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 501 IETLLTNIQGLL-KVAIDNARAQEKQIQLE--KTELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666544 445678877642 22 2222211111 2233 4577888888888888776553
No 287
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.49 E-value=2.6e+02 Score=38.18 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
-.+|++....|+..|+.++...+.|..+-......+..+..+..-..+.=++|.-|++.+..+=+.-..|+.++.|-
T Consensus 515 ~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588999999999999999999999875533222222222333333333334444444444434444455544443
No 288
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.45 E-value=7.6e+02 Score=29.22 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
-++|...++.++.++.-|+.++..|..++.+.+.
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999998887766
No 289
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=37.30 E-value=51 Score=42.91 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=37.0
Q ss_pred cCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002819 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (876)
Q Consensus 85 ~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~ 129 (876)
.+++-+|+|......-..|-|.|.|..|++-|++.|+.++...|.
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 567778888765444578999999999999999999999986544
No 290
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.86 E-value=5.2e+02 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
+.-.||+-++.++..+++.+.+...+-
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444888889999988988888877653
No 291
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=36.85 E-value=1.1e+02 Score=28.64 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhc
Q 002819 623 RLALEQDVSRLQEQLQA------ERDLRAALEVGLS 652 (876)
Q Consensus 623 r~~LeqeV~~Lq~qL~~------E~~l~~~Le~al~ 652 (876)
...|++++++||+||.. |+==|.||+.+|.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 46788899999998864 6777888888774
No 292
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=36.76 E-value=2.6e+02 Score=27.06 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002819 674 EIALAEADVARLKQKVAELH 693 (876)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~ 693 (876)
||..|+..|..||.++..|.
T Consensus 97 ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666777777777777664
No 293
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=36.24 E-value=1.5e+02 Score=30.21 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
.|..|+.+|..|.+.|+.+|...|.-+..- --.+-..+++|..-|+.||+++-.|+.++..+..+.
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 466678888888888888887766432100 011234556777777777777777776666655543
No 294
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=36.07 E-value=90 Score=28.70 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=41.9
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL--------------HERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~--------------~~~r~~LeqeV~~Lq~qL~ 638 (876)
....||..-..||.++.+|..-+++|...+.+....+ -.--..||.||.+|++++.
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888889999999999999999999998875533 2224456777777666653
No 295
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=35.92 E-value=6.2e+02 Score=33.07 Aligned_cols=19 Identities=0% Similarity=-0.193 Sum_probs=10.5
Q ss_pred ccccCCCHHHHHHHHHHhh
Q 002819 201 ILRQAADVEEVDRRVQEYE 219 (876)
Q Consensus 201 IFRisGs~~~I~~L~~~ld 219 (876)
.|++.|.......+...+.
T Consensus 109 ~~~~n~~~~~~~~~~~~l~ 127 (1164)
T TIGR02169 109 YYYLNGQRVRLSEIHDFLA 127 (1164)
T ss_pred eEEECCccccHHHHHHHHH
Confidence 4666666555555555443
No 296
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=35.85 E-value=6.8e+02 Score=33.34 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=64.3
Q ss_pred HHHHhHhhhhhHHHHHHH---HHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCC
Q 002819 581 ELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAER--DLRAALEVGLSMSS 655 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~---~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~--~l~~~Le~al~~~~ 655 (876)
++....|++-..-|..++ ..|.-+|..+|.-+..|..-+..+-..||++|..||.++..-+ .-..+++.+-...
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~- 250 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLA- 250 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 344445555444444444 3466788888888888887777788889999999998886522 2233444443210
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 656 ~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
.-...+|+..+++++.-..|=.++...-++++.|..
T Consensus 251 ---~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~ 286 (1109)
T PRK10929 251 ---EQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIAS 286 (1109)
T ss_pred ---HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234555666665555555555555555544433
No 297
>PF14282 FlxA: FlxA-like protein
Probab=35.75 E-value=2.2e+02 Score=26.99 Aligned_cols=62 Identities=31% Similarity=0.538 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002819 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (876)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~ 704 (876)
.|++.+..|+++|++ |.-...+|++++. .-+.+|...|.-|+.++..|+.+..++.....
T Consensus 23 ~L~~Qi~~Lq~ql~~------------------l~~~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~ 82 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQE------------------LSQDSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQ 82 (106)
T ss_pred HHHHHHHHHHHHHHH------------------HHcccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CC
Q 002819 705 GS 706 (876)
Q Consensus 705 ~s 706 (876)
.+
T Consensus 83 ~~ 84 (106)
T PF14282_consen 83 SS 84 (106)
T ss_pred cc
No 298
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.62 E-value=5.4e+02 Score=26.92 Aligned_cols=67 Identities=27% Similarity=0.286 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 615 rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
.+..+..+-..|+.+...|+.++.+=+.-...++.... ...-.+......+|.+|++.-..|..
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~----------------e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE----------------ELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777888888888888777777676666443 23445567778888888888777777
Q ss_pred HHH
Q 002819 695 QLN 697 (876)
Q Consensus 695 ~l~ 697 (876)
+|-
T Consensus 185 ~l~ 187 (189)
T PF10211_consen 185 QLE 187 (189)
T ss_pred HHh
Confidence 663
No 299
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.38 E-value=4.4e+02 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQ-LNQ 698 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~-l~~ 698 (876)
.....|..+.+++..|+.+|++++.. |+.
T Consensus 78 ~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 78 KRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666777777777777777777666 443
No 300
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.23 E-value=4.4e+02 Score=25.77 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=24.9
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
.|.+|+..|..|...|.+=.+.|..+++. ..+-..|++++..|+.+.
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~~--------~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRAL--------KKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555555554333 223345666666665554
No 301
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.91 E-value=6.3e+02 Score=33.69 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=30.7
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhh-------HhHhHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAI-------LQASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRA 645 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~-------~q~~~~~rk~~~~~~---r~~LeqeV~~Lq~qL~~E~~l~~ 645 (876)
.|++||.....++.++..-.+.... ++..++.++..+..+ ..+|++.+..+.++..+....+.
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666444333333 334444444444443 44444444444444444444444
No 302
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.84 E-value=4.6e+02 Score=31.63 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=51.0
Q ss_pred HhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCChhHHHHHHHHHHHH
Q 002819 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS-SRGMDSKTRAELEEIALAE 679 (876)
Q Consensus 601 ~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~-~~~~p~~~~~ll~eia~~E 679 (876)
+.+..-.+|-.++--+..++..+.+|.+==.+-++-||.-..+..-|..+... +.+.. +.. ..--+|=.|...+.
T Consensus 212 ~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~--~el~~l~~E~~~~~ 287 (511)
T PF09787_consen 212 YLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNS--IELEELKQERDHLQ 287 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccch--hcchhhHHHHHHHH
Confidence 33333334444444444444444444444444555555555555556552211 11110 000 12235667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002819 680 ADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 680 ~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
+++..|+.++..|+.++.+....
T Consensus 288 ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 288 EEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777555553
No 303
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=34.73 E-value=3.4e+02 Score=37.64 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=72.1
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA-----------LEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~-----------LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
+..|.+|+...++|+..|.+...++..|+...++=|+...+-+.. |.-++.+|.+.|..=.++-.=|+.
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888999999999999999988877765444433 667999999999876666666666
Q ss_pred hhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 650 GLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 650 al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
-+++.. ..+-.+..++-.+++.+...|..|+..-..|-.
T Consensus 1336 ~~~~~q------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~ 1374 (1822)
T KOG4674|consen 1336 ELNRLQ------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAA 1374 (1822)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665332 222233445555566665555554444433333
No 304
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.65 E-value=5.9e+02 Score=27.48 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (876)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~L 647 (876)
..|...+.+.+..|++++..|+++++.=..-..-|
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666667777666666665444433333
No 305
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=34.52 E-value=6.7e+02 Score=27.72 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=52.8
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQ 687 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~ 687 (876)
+|+....+.+.+...+.+|+.++..+++++..-...-..=..+- .-+-....-+..++.-+.+..+++++..+..
T Consensus 129 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~ 203 (301)
T PF14362_consen 129 VQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQA 203 (301)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666666666666555443322222211 1111233446778888888888888888888
Q ss_pred HHHHHHHHHHHHHh
Q 002819 688 KVAELHHQLNQQRQ 701 (876)
Q Consensus 688 ~v~~l~~~l~~~~~ 701 (876)
+......+|.+.+.
T Consensus 204 ~~~~~~~~l~~~~~ 217 (301)
T PF14362_consen 204 QIDAAIAALDAQIA 217 (301)
T ss_pred hHHHHHHHHHhhHH
Confidence 88888888874444
No 306
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.45 E-value=5.7e+02 Score=27.70 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 671 ELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 671 ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
|=-|.+.||+..-+|+.+|.+|+.++
T Consensus 175 le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 175 LEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 33344445555555555555555444
No 307
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.38 E-value=2.6e+02 Score=32.84 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSK-TRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~-~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
.-.+|.++-.+|+.++++=+.-|..+-+.+...... ... +.+|++++..|-++|..||+++..+..++.+..
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQ-------KKDKIEEIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555544321110 112 678899999999999999999999998888866
Q ss_pred hh
Q 002819 701 QH 702 (876)
Q Consensus 701 ~~ 702 (876)
..
T Consensus 104 ~~ 105 (418)
T TIGR00414 104 LS 105 (418)
T ss_pred Hh
Confidence 53
No 308
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.14 E-value=3.2e+02 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.=|.++..+-.+|..+|..+..++.++......+..|..
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~ 180 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELK 180 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999988888888777766
No 309
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=34.11 E-value=4.5e+02 Score=34.96 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.3
Q ss_pred CchhhHHHHhhhhhhHHHHHHHHHHHhh
Q 002819 825 TASSALVELTTRLDFFKERRSQLMEQLH 852 (876)
Q Consensus 825 ~~~s~l~~lt~rl~f~kerrsq~~~~~~ 852 (876)
...+...+|+.+|.=+...|.-+.++|-
T Consensus 753 ~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 753 QLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 3446677888888888777777777764
No 310
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.03 E-value=62 Score=33.35 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
..|.|-..|.++|-+|+.++.||+.+|
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999
No 311
>PRK11281 hypothetical protein; Provisional
Probab=33.94 E-value=4.5e+02 Score=34.97 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=36.2
Q ss_pred HHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 599 ~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
..|..+|..+|.-+..|..-+..+-..+|+.|..||.++.+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999988888888888899999999998876
No 312
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.87 E-value=2.1e+02 Score=33.35 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=44.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCCCChhHHH----HHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQA---ERDLRAALEVGLSMSSGQFSSSRGMDSKTRA----ELEEIALAEADVAR 684 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~---E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~----ll~eia~~E~~v~~ 684 (876)
|+.-+.++.+++..+|.||+.|.+.|.. +.+|-.-++.|-. .-.|.++ .+.||+-|-...++
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~E-----------d~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKE-----------DEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----------hHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555667778888888888888877654 3333333333322 1122222 24566666677777
Q ss_pred HHHHHHHHHHHHHH
Q 002819 685 LKQKVAELHHQLNQ 698 (876)
Q Consensus 685 Le~~v~~l~~~l~~ 698 (876)
-|+++.+|...+++
T Consensus 174 aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 174 AEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHHHhhhcc
Confidence 77777777644443
No 313
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=33.75 E-value=7.6e+02 Score=28.12 Aligned_cols=118 Identities=26% Similarity=0.251 Sum_probs=77.0
Q ss_pred cccCCCChhHHHHHhHhhhhh--HHHHHHHHHHhhhhhh--HhHhHHHhHHHHHHHHHHHH---HHHHHHHHHHHH--HH
Q 002819 571 VESIDSSGEEELAIQRLEITK--NDLRHRIAKEARGNAI--LQASLERRKQALHERRLALE---QDVSRLQEQLQA--ER 641 (876)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~n~~--~q~~~~~rk~~~~~~r~~Le---qeV~~Lq~qL~~--E~ 641 (876)
-|.-|.|.---++|+-=|+++ .++|..++.+||.|=+ ||..-..-=++++..|.-|| ++-.-+.++-++ |.
T Consensus 97 keLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~dE 176 (366)
T KOG1118|consen 97 KELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKDE 176 (366)
T ss_pred HhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCChH
Confidence 355566777778888888877 5889999999999965 77763333334443333333 234455555666 89
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 642 DLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 642 ~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
+||.|||.-=+ ++-.+.-.=++++|.||...+|=+.=+..||.=.|+
T Consensus 177 elrqA~eKfEE-------------SkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrq 223 (366)
T KOG1118|consen 177 ELRQALEKFEE-------------SKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQ 223 (366)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999997322 111222223678888888888877777777765555
No 314
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=33.70 E-value=43 Score=41.90 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~----~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
+.++.+|+..|..|.+.|..-+.....++..+........ ....+..+...|-.+|..||.++.+|++++..|..+
T Consensus 453 ~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 453 DEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666665555555555554432211111 112334556678889999999999999999999999
Q ss_pred HHH
Q 002819 696 LNQ 698 (876)
Q Consensus 696 l~~ 698 (876)
|.+
T Consensus 533 l~~ 535 (722)
T PF05557_consen 533 LEK 535 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 315
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=33.52 E-value=4.4e+02 Score=32.92 Aligned_cols=120 Identities=22% Similarity=0.359 Sum_probs=71.2
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHH---------------------HHHHHHHHHHHH------
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERR---------------------LALEQDVSRLQE------ 635 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r---------------------~~LeqeV~~Lq~------ 635 (876)
.|+.|..--.-|.-+|++|-|-=..++..+.+-+..+.... ..|..+|.+++.
T Consensus 609 ~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAv 688 (786)
T PF05483_consen 609 NIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAV 688 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666665544444444443333332211 225556666654
Q ss_pred HHHHHHHHHHHHH----Hhh-cCCCCCCC------CC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 636 QLQAERDLRAALE----VGL-SMSSGQFS------SS--RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 636 qL~~E~~l~~~Le----~al-~~~~~~~~------~~--~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
.+|+|++||+-=. .|| ....+++- .+ ..--.+-++.++=-+.||.++++|+-.+..|+.||-.+|.+
T Consensus 689 K~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~e~~e 768 (786)
T PF05483_consen 689 KLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLKTERTE 768 (786)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5788888876322 233 33333331 01 12234556777778899999999999999999999999985
No 316
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.33 E-value=1.3e+02 Score=26.66 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (876)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (876)
.+++.++.-|++|..+|..|+++...|.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4778999999999999999999855555
No 317
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=33.15 E-value=1.5e+02 Score=25.51 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
++.|+.||+++|.+=..--..++.-|++..-.-.-|..+ +...-+-++-++.++..|++.+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eV---ve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEV---VEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCH---HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777765555555555554321111123222 2333444556677777787777766
No 318
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=33.12 E-value=2.4e+02 Score=26.02 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=31.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 002819 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLS 708 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~ 708 (876)
..|++..++.|+ .|..-|..++.....+|.+-|.+++-++-
T Consensus 31 ~eLs~e~R~~lE------~E~~~l~~~l~~~E~eL~~LrkENrK~~~ 71 (85)
T PF15188_consen 31 RELSPEARRSLE------KELNELKEKLENNEKELKLLRKENRKSML 71 (85)
T ss_pred cCCChHHHHHHH------HHHHHHHHHhhccHHHHHHHHHhhhhhHH
Confidence 567888887765 67777788888888888888888877763
No 319
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=32.71 E-value=6.5e+02 Score=32.13 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=42.3
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHH--H---HHHHHHHHHHHHHHHH
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--R---LALEQDVSRLQEQLQA 639 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~--r---~~LeqeV~~Lq~qL~~ 639 (876)
+-|--|+-|-+-|..|+.+.-.++-.|.-.|-.-.++..-...+ | ..||.|...++.||..
T Consensus 45 ~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiri 110 (1265)
T KOG0976|consen 45 DAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRI 110 (1265)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667899999999999999999999988887655444332222 2 2366666666666543
No 320
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=32.70 E-value=1.3e+02 Score=29.82 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
-|+-|.+||.|||. ||.-++.+..-...|-.-|+-|+..|..|+.--.-|..
T Consensus 23 WeiERaEmkarIa~-----------LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 23 WEIERAEMKARIAF-----------LEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred hHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35668899999973 33334444444555666677777777777766544433
No 321
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=32.69 E-value=4.1e+02 Score=30.84 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=67.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC------------C-C-CCCChhHHHHHHHHH
Q 002819 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------------S-S-RGMDSKTRAELEEIA 676 (876)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~------------~-~-~~~p~~~~~ll~eia 676 (876)
.|..|-...+-.|..|+....++......=...+..||.||..-.+++. . + -.-+.--.+|+.|+.
T Consensus 47 ~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~ 126 (384)
T PF03148_consen 47 RLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVE 126 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHH
Confidence 3445555666667777777777776666666677788888765444442 1 1 345666789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002819 677 LAEADVARLKQKVAELHHQLNQQRQHHYG 705 (876)
Q Consensus 677 ~~E~~v~~Le~~v~~l~~~l~~~~~~~~~ 705 (876)
+++.--..|++.+.....||..-+.-++.
T Consensus 127 li~~~~~lL~~~l~~~~eQl~~lr~ar~~ 155 (384)
T PF03148_consen 127 LIENIKRLLQRTLEQAEEQLRLLRAARYR 155 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888776664433
No 322
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=32.63 E-value=1.2e+02 Score=28.96 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002819 675 IALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 675 ia~~E~~v~~Le~~v~~l~~~l 696 (876)
...+.++|-.||++|.+|..++
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 85 MDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777888887777665
No 323
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.32 E-value=6.8e+02 Score=27.08 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=18.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
..=+++.|++++.||..+.-+++.+..++.++-+
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~ 117 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEK 117 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666655555555544444433
No 324
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=32.17 E-value=4.1e+02 Score=31.48 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=47.3
Q ss_pred hhhhHhHhHHH----hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHH
Q 002819 604 GNAILQASLER----RKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (876)
Q Consensus 604 ~n~~~q~~~~~----rk~~~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~ 678 (876)
.|++.++.++. |......-+.-|++++.+++++|.+ |..+...... .|.+ +|.....+..+|+.+
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~-----~~~~-----~~~~~~~~~~~l~~l 209 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE-----NGGI-----LPDQEGDYYSEISEA 209 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----Cccc-----CccchhhHHHHHHHH
Confidence 46666666554 4455566677799999999999874 4445444321 1211 233333444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002819 679 EADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 679 E~~v~~Le~~v~~l~~~l~~~ 699 (876)
+..+..++.++..+..++..-
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444433
No 325
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.17 E-value=7.3e+02 Score=33.60 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=14.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 664 MDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
.|.+..++-.++..++.++..|+.++..+..
T Consensus 968 ~~~qL~~~e~el~~~~~~ie~le~e~~~l~~ 998 (1311)
T TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINE 998 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554555545444444444444444443333
No 326
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=31.98 E-value=7e+02 Score=29.68 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhh-----HhHhHHHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAI-----LQASLERRKQALHERRLA------------LEQDVSRLQEQLQAERDL 643 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~-----~q~~~~~rk~~~~~~r~~------------LeqeV~~Lq~qL~~E~~l 643 (876)
++.+..=|..=|+|-+|+++++=.-|. .+..+..-+.+|.++|.. +=+-|.+||.||-+.+.=
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777555433322 122222233344444422 446788999999887776
Q ss_pred HHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 644 RAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 644 ~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
..+|...+.... + .|..|+..|.-||++|..++.+|.
T Consensus 302 L~~L~~~~~p~s----------P-------qV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 302 YAQLMVNGLDQN----------P-------LIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHhhcCCCC----------C-------chhHHHHHHHHHHHHHHHHHHHhh
Confidence 666665543211 1 245555566666666666665553
No 327
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=31.81 E-value=1.9e+02 Score=29.04 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHHHHH
Q 002819 662 RGMDSKTRAELEEIAL-AEADVARLKQ 687 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~-~E~~v~~Le~ 687 (876)
..-++.-.++|.||.+ +|.|++||++
T Consensus 111 ~s~DP~L~~vL~EIElRa~VELAKl~~ 137 (138)
T PRK12787 111 ASGDPGLDAVLDEIELRVEVELAKLGQ 137 (138)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcc
Confidence 4557888999999987 7999999975
No 328
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.75 E-value=3.8e+02 Score=25.32 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (876)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (876)
..+.+.++++-..|.+...+|+.++.+=..+...|+..-
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666677777777778777777777777777764
No 329
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=31.69 E-value=2.9e+02 Score=30.52 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (876)
Q Consensus 614 ~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (876)
|+|.+...+|.-+=+-+++|+++- +.|..+..-|+.++.+|..+|.+++
T Consensus 213 rnreaa~Kcr~rkLdrisrLEdkv-------------------------------~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 213 RNREAASKCRKRKLDRISRLEDKV-------------------------------KTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-------------------------------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445566666666666666665542 3455556667778888888888888
Q ss_pred HHHHHHHh
Q 002819 694 HQLNQQRQ 701 (876)
Q Consensus 694 ~~l~~~~~ 701 (876)
+++-+...
T Consensus 262 ~~V~~hi~ 269 (279)
T KOG0837|consen 262 QKVMEHIH 269 (279)
T ss_pred HHHHHHHh
Confidence 77766544
No 330
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.68 E-value=2e+02 Score=31.06 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=32.9
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (876)
|.++...+.+|..+|..=-+.-+.|++ ..+.+..+-..+++++++|++|+..-...+.-|.--|.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEV----YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333 23334444555677777777777776666665555443
No 331
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.48 E-value=2.5e+02 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 675 IALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 675 ia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
++.||+++.++++++..|+.++..-+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555555444
No 332
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=31.44 E-value=6.5e+02 Score=32.20 Aligned_cols=60 Identities=30% Similarity=0.276 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
+.+|+.+-++||.+|+....-=--+|+|+. |+||.++|+++..+-.+--+++..--++|.
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R-------------------~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri 731 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKR-------------------LEEIPLIEKAYDERQEEDRELYEAREKQRI 731 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------------------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455777777777777765555555666654 556666666665555555555554444444
No 333
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=3.5e+02 Score=29.32 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
++.+=+|+.+++.-+-.|+.+..+++.=|.++|+
T Consensus 95 ik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 95 IKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455557777777888888888888888888886
No 334
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.18 E-value=6.3e+02 Score=26.66 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=46.8
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~--r~-~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
+|+..+..+.+|+...+.=-+--|-|+-+.|.||...++. |. +|+++..-|+++ +..||.-|..
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~---~e~lr~el~k 141 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI---LESLRWELAK 141 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6777888888888888766666678888999999877544 55 888888888883 3445554444
No 335
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.97 E-value=5.7e+02 Score=33.38 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
..|-.||..|++.|...|..+..+..+|..+
T Consensus 846 ~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 846 SSLKSELGNLEAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3555555555555555555555555555443
No 336
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.68 E-value=5e+02 Score=32.79 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
..||.+.+-||+|-.-|.++|..|+.
T Consensus 93 ~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46888888899988888888888875
No 337
>PRK12705 hypothetical protein; Provisional
Probab=30.63 E-value=5e+02 Score=31.50 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 617 QALHERRLALEQDVSRLQEQLQAE 640 (876)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~~E 640 (876)
...+.+|.++|+|+...+..++..
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777544
No 338
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=30.59 E-value=5.3e+02 Score=28.58 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=48.8
Q ss_pred HHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHH
Q 002819 596 HRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE---QLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAEL 672 (876)
Q Consensus 596 ~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~---qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll 672 (876)
..|+++.+.++- .+|.+.++.+-..|+.++.+|+. .+|...+++.. .+++.
T Consensus 155 ~~i~~~~~~~e~-----d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~---------------------~~e~~ 208 (264)
T PF07246_consen 155 QLIKEKTQEREN-----DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKIL---------------------HEELE 208 (264)
T ss_pred HHHHHHhhchhh-----hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHH---------------------HHHHH
Confidence 344444444443 55666666555666666666665 33433333221 24566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002819 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~ 705 (876)
+.++-+..+..+|+.+..+.+.....+|+...-
T Consensus 209 ~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 209 ARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666667777777777777777777777665433
No 339
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.50 E-value=1.4e+02 Score=25.66 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~a 650 (876)
.|.+|...|+.|++|++..+..=...|.|=+.-
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888889999999999998888777776543
No 340
>PF13514 AAA_27: AAA domain
Probab=30.47 E-value=7.4e+02 Score=32.89 Aligned_cols=131 Identities=21% Similarity=0.221 Sum_probs=77.2
Q ss_pred cccCCCChhHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHH------------HhHHHHHHHHHH---HHHHHHHHHH
Q 002819 571 VESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLE------------RRKQALHERRLA---LEQDVSRLQE 635 (876)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~------------~rk~~~~~~r~~---LeqeV~~Lq~ 635 (876)
.+.++++.+....+++++.....++.+|..-...-+.|+..++ .+=.+|++.+.. .++|+.+++.
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~ 310 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEA 310 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777777666433333333333221 111244444433 4556666666
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 636 QLQAERDLRAALEVGLSMSSGQF------SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 636 qL~~E~~l~~~Le~al~~~~~~~------~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
++..-..--..|..-|+ +.... .++......+++|+.+-..++..+..++.++.+...++.+-+..
T Consensus 311 e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 311 ELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554433334444466 22111 13333445778888888888888888888888888888766654
No 341
>PRK14127 cell division protein GpsB; Provisional
Probab=30.19 E-value=82 Score=30.29 Aligned_cols=28 Identities=39% Similarity=0.426 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
++..|++-|++++.+|++++.+++.++.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555677777777777777776665
No 342
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.18 E-value=1.8e+02 Score=32.91 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQ 687 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~ 687 (876)
++..||+.+|++...|++
T Consensus 75 ~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 75 ELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555543
No 343
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.88 E-value=6.2e+02 Score=32.32 Aligned_cols=18 Identities=17% Similarity=0.016 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 002819 108 ETSEDLYEWKTALELALA 125 (876)
Q Consensus 108 dSeeE~~eWI~AIr~al~ 125 (876)
.+..+...|++.+..+..
T Consensus 38 ~~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 38 KSVEESKEIIIKLTALGS 55 (771)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 467788888888887764
No 344
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=29.86 E-value=5.6e+02 Score=28.48 Aligned_cols=109 Identities=22% Similarity=0.177 Sum_probs=68.2
Q ss_pred HHhHhhhhhHH---HHHHHHHHhhhhhhHhHhHHHhHHHH----------------------------------------
Q 002819 583 AIQRLEITKND---LRHRIAKEARGNAILQASLERRKQAL---------------------------------------- 619 (876)
Q Consensus 583 ~~~~~~~~~~~---~~~~~~~~~~~n~~~q~~~~~rk~~~---------------------------------------- 619 (876)
+|.+|...-.+ .|..|..|++.|+.|.+.|+..=++.
T Consensus 94 Li~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~ 173 (264)
T PF08687_consen 94 LIESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSL 173 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444443333 35678999999999998887654422
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHH
Q 002819 620 -----HERRLALEQDVSRLQEQLQAER-----------DLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADV 682 (876)
Q Consensus 620 -----~~~r~~LeqeV~~Lq~qL~~E~-----------~l~~~Le~al~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v 682 (876)
++-|..|++--..|+.|+.+=+ .++.+|.+.|..- ++. .-.|+-.| -+||.|---||+-|
T Consensus 174 ~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~e--q~~dy~~fv~mK-a~Ll~eqreLddki 250 (264)
T PF08687_consen 174 DEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEE--QLADYRHFVKMK-AALLIEQRELDDKI 250 (264)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHH--HHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 3447788888899999987644 4555555554310 110 11222223 26888888888888
Q ss_pred HHHHHHHHHHHH
Q 002819 683 ARLKQKVAELHH 694 (876)
Q Consensus 683 ~~Le~~v~~l~~ 694 (876)
--.|+|+..|+-
T Consensus 251 klgeEQL~~L~e 262 (264)
T PF08687_consen 251 KLGEEQLEALRE 262 (264)
T ss_dssp HHHHHHHHHHCC
T ss_pred HhhHHHHHHHHh
Confidence 888888877653
No 345
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=29.71 E-value=73 Score=37.83 Aligned_cols=58 Identities=29% Similarity=0.370 Sum_probs=40.9
Q ss_pred HHHHhhhhh--hHhH-hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002819 598 IAKEARGNA--ILQA-SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSS 655 (876)
Q Consensus 598 ~~~~~~~n~--~~q~-~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~ 655 (876)
|-+|+++|- +||. ++---=-++...-.+|+||-++++++|.+|+..|+-||.-|-...
T Consensus 597 ~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l 657 (661)
T KOG2070|consen 597 LMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKML 657 (661)
T ss_pred HHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677663 2332 111122366777788999999999999999999999998775443
No 346
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=29.55 E-value=6.2e+02 Score=25.76 Aligned_cols=96 Identities=25% Similarity=0.261 Sum_probs=67.9
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~ 662 (876)
.|.++...+.+.+-+-.+-.= ....+.++.....+..||.-..++..+|=..++.-.-...-|+.
T Consensus 7 ~IK~~R~drAe~a~~~q~~~l--~~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~------------- 71 (152)
T PF07321_consen 7 RIKHLREDRAERALRRQERRL--QEARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK------------- 71 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH-------------
Confidence 344454444444433332211 12334556677788999999999998888888877666666654
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
...+|+.|-+-+..||+.+.+...++.+++.
T Consensus 72 --------~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~ 102 (152)
T PF07321_consen 72 --------WQQQVASLREREAELEQQLAEAEEQLEQERQ 102 (152)
T ss_pred --------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5578999999999999999999999998887
No 347
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=29.12 E-value=2.9e+02 Score=32.98 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHhhhhh-hHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002819 599 AKEARGNA-ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (876)
Q Consensus 599 ~~~~~~n~-~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (876)
|.+-|+|. .+|+.+++| ++|+|+..++.|||.|+.-+.-+.+-.+
T Consensus 274 A~~~~~~~~~~~~~~~~r---------~~~~~~~~~~~Q~Q~~~~~~~~~~~~~~ 319 (659)
T KOG4140|consen 274 APEDNNNRKFLNKRLSER---------EFDPDIHCGVIQLQTKKPCTRSLTCKTH 319 (659)
T ss_pred chhhhhhHHHHHHHHHHh---------hhhhhhhhhhHhhccCCCcchhHHHhhh
Confidence 34445554 366666643 7899999999999999988888776554
No 348
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.92 E-value=4.3e+02 Score=25.79 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=43.3
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
.|+.|..--.+++..|+.=-..-...++.|+.-+....++|..|+.++..++.++.+=..=..+|-.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666543344445666677777777888888999999988888766555555543
No 349
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.67 E-value=1.3e+02 Score=27.81 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=28.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (876)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l 643 (876)
+.-++|-..++..-.+|.+||++|+.+|..|+.=
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888889999999999999988753
No 350
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=28.49 E-value=7.5e+02 Score=26.39 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
-.+-++++.-...+|.++..||++|..|+.+..++.
T Consensus 181 e~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 181 EQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346678999999999999999999999988765543
No 351
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.36 E-value=3.9e+02 Score=23.58 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 625 ALEQDVSRLQEQL---QAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 625 ~LeqeV~~Lq~qL---~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
.||.+|..||.+| ......+-+.-+.|..- --..+.-|..+=.++.+|..++..|+.+|-..|
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~E-------------Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRE-------------RDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4777777777766 23333333333333210 012233344455555666666666666654433
No 352
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.30 E-value=1.3e+03 Score=30.37 Aligned_cols=125 Identities=22% Similarity=0.195 Sum_probs=73.9
Q ss_pred ChhHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhH------H-HhHHHH--HHHHHHHHHHHHHH--HH--HHHHHHHH
Q 002819 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAILQASL------E-RRKQAL--HERRLALEQDVSRL--QE--QLQAERDL 643 (876)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~------~-~rk~~~--~~~r~~LeqeV~~L--q~--qL~~E~~l 643 (876)
|-.-|+.|+|+-..--+-+++|..+.+.+.--|..+ | -.+... |.+++--+.++.-| =+ |+.-|..+
T Consensus 59 cp~kelfi~riq~ldlete~a~~~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~ 138 (1195)
T KOG4643|consen 59 CPTKELFIQRIQILDLETEMAQMRTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIA 138 (1195)
T ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899998888888888876666554433322 1 122233 66665544444333 22 34445554
Q ss_pred HHHHH-HhhcCCCC-------CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 644 RAALE-VGLSMSSG-------QFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 644 ~~~Le-~al~~~~~-------~~~~~-~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
-.-|+ +||+...- ....| ...-.+-.+|=.|||.+|+-|..|++++.+=--+|.+-|+
T Consensus 139 e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~ 205 (1195)
T KOG4643|consen 139 EKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRN 205 (1195)
T ss_pred HHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454 66655321 22233 3344567788899999999999999888765544444444
No 353
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=28.01 E-value=5.4e+02 Score=24.64 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
...-...|-..|...+..|..++..|...+..|-+.+.+
T Consensus 66 ~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~ 104 (141)
T TIGR02473 66 YQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRE 104 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777777777777777777777665553
No 354
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=27.88 E-value=6.2e+02 Score=32.58 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=59.9
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HhhcCCCCCC
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ---LQAERDLRAALE--VGLSMSSGQF 658 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~q---L~~E~~l~~~Le--~al~~~~~~~ 658 (876)
-|-||..| +++..|....|.+|.+.--|+.|.. .|+|-.+|+++...+... |+....++.+|. +.|+.-....
T Consensus 184 Nq~l~klk-q~~~ei~e~eke~a~yh~lLe~r~~-~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~k~Leqel~~~ 261 (984)
T COG4717 184 NQLLEKLK-QERNEIDEAEKEYATYHKLLESRRA-EHARLAELRSELRADRDHIRALRDAVELWPRLQEWKQLEQELTRR 261 (984)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 35556666 9999999999999999888876543 333333344443333322 222333333332 1121111111
Q ss_pred -CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002819 659 -SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (876)
Q Consensus 659 -~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~ 707 (876)
--+..+|... +-.+...|+.....|-.+..|..+|-+--.+..-..
T Consensus 262 ~~e~~~fP~DG---vlrlEk~~ahL~~~ea~i~~~~vrlae~~d~~~~Li 308 (984)
T COG4717 262 REELATFPRDG---VLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLI 308 (984)
T ss_pred hhhhccCCchh---HHHHHHHHHhhhhhhhhhHHHHHHHHhhhHHHHhcc
Confidence 1235556552 222223555555666666666666644444443333
No 355
>PRK11239 hypothetical protein; Provisional
Probab=27.85 E-value=88 Score=33.41 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
-+|-++|+.||++|+.|+..+..|..|+
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555555555444
No 356
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=27.60 E-value=2.4e+02 Score=29.77 Aligned_cols=47 Identities=30% Similarity=0.370 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
||+|-.+|+++|..|+.-+..+|.-. =.-++.|++|..++++=|.-|
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~--------------------~K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEH--------------------KKLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988744 345677888888888776654
No 357
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.53 E-value=1.8e+02 Score=30.45 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002819 621 ERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 621 ~~r~~LeqeV~~Lq~qL~ 638 (876)
++..+|++++++|+.+|+
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666666665
No 358
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.29 E-value=3.7e+02 Score=32.20 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhhhhHhHhHHH
Q 002819 592 NDLRHRIAKEARGNAILQASLER 614 (876)
Q Consensus 592 ~~~~~~~~~~~~~n~~~q~~~~~ 614 (876)
.+|+.++++=.+.|..|++.-++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~ 91 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENER 91 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454455667666665443
No 359
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.26 E-value=3.1e+02 Score=36.33 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQ 687 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~ 687 (876)
+.....|-+|.+.++..+..||+
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~ 194 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELEL 194 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677776666554443
No 360
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.21 E-value=6.1e+02 Score=33.36 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHhHhhhhhHHHHHHHHH---HhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 582 LAIQRLEITKNDLRHRIAK---EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~---~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (876)
..|+.||.--.+||..|-. +-..=..-+..++++-+.+...+.+++.....+...+.+.++
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666664421 001111123444555555555555555555555555444443
No 361
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.08 E-value=1.2e+03 Score=28.20 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHHHhhhc-CCCC
Q 002819 835 TRLDFFKERRSQLMEQLHNL-DLNY 858 (876)
Q Consensus 835 ~rl~f~kerrsq~~~~~~~~-d~~~ 858 (876)
.|-.++|+-...+-+-|..| .|.|
T Consensus 275 ~r~~~Lk~H~~svr~HI~~Ls~K~Y 299 (475)
T PRK10361 275 TRESALQEHIASVRNHIRLLGRKDY 299 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 46667777777777666655 4555
No 362
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.99 E-value=4.8e+02 Score=33.77 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hcCCccchhhhhhccccc
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH--------HYGSLSDACDRYQNVQNH 720 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~--------~~~s~~~~~~~~~~~~~~ 720 (876)
.....++..+++.++.++..++..+..+..++.+.+.. ..+-.|.+|. +.++.+
T Consensus 409 ~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg--~~l~~~ 470 (908)
T COG0419 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG--QELPEE 470 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCCcH
Confidence 34445555566777777777777777777777775431 1356788886 444443
No 363
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=26.71 E-value=27 Score=28.88 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=18.7
Q ss_pred CCCcEEEEEEEeCCeeeEecC
Q 002819 34 WKSWKKRWFILTRTSLVFFKN 54 (876)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd 54 (876)
.+.|.+.|+++.+++|.+||=
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 567999999999999999983
No 364
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=26.34 E-value=9.5e+02 Score=32.75 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHh
Q 002819 838 DFFKERRSQLMEQL 851 (876)
Q Consensus 838 ~f~kerrsq~~~~~ 851 (876)
+.|.||=-+|.+++
T Consensus 1100 ~ll~e~er~l~E~~ 1113 (1353)
T TIGR02680 1100 ELLTARERELLENH 1113 (1353)
T ss_pred HHhhHHHHHHHHHH
Confidence 45555555555443
No 365
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.21 E-value=1.2e+02 Score=32.37 Aligned_cols=59 Identities=31% Similarity=0.443 Sum_probs=0.0
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH---------HHHHHHHHHHHHHHHHHHHHH
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---------ALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~---------~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
|.|-.+--||..|+.|++.|.+ +..-+.|+-+|||-+. ..+|-=..+++||..|+.||.
T Consensus 124 e~EklkndlEk~ks~lr~ei~~-~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~lk~qi~ 191 (220)
T KOG3156|consen 124 ENEKLKNDLEKLKSSLRHEISK-TTAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTNLKTQIE 191 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cchhceeecchhhccccchhhhcchhHhHHHHHHHHHHHHHHHHHH
No 366
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=26.17 E-value=3.9e+02 Score=27.18 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=49.5
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQLQAERDL 643 (876)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~---~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l 643 (876)
.++|+...-||.-..++..++.-=|+-=..++|.++ ...+.|.+++.++|.-+.+|+.-|......
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788999888888888544444444555544 445688999999999999999998876654
No 367
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=26.12 E-value=8.9e+02 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 672 LEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 672 l~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
..++..++.++..++..+...+.+|
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 368
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=26.08 E-value=5.6e+02 Score=31.72 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=10.1
Q ss_pred HHhHhhhhhHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRI 598 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~ 598 (876)
-..|||..|.-||-++
T Consensus 112 rLaRLe~dkesL~LQv 127 (861)
T KOG1899|consen 112 RLARLEMDKESLQLQV 127 (861)
T ss_pred HHHHHhcchhhheehH
Confidence 4556777777666544
No 369
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.03 E-value=8.5e+02 Score=26.23 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=47.4
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEI-ALAEADVARLK 686 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~ei-a~~E~~v~~Le 686 (876)
++.-...|..........|..+|..|+..+..|+.-|..-|.-+-. +..++..-| ..++.+....|
T Consensus 108 i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k-------------rl~e~~~~l~~~i~~Ek~~Re 174 (247)
T PF06705_consen 108 IQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILK-------------RLEEEENRLQEKIEKEKNTRE 174 (247)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555556677778888888888888777766654421 111222111 24566666667
Q ss_pred HHHHHHHHHHHHHHhh
Q 002819 687 QKVAELHHQLNQQRQH 702 (876)
Q Consensus 687 ~~v~~l~~~l~~~~~~ 702 (876)
+.+.+|+..|.+-+..
T Consensus 175 ~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 175 SKLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766655553
No 370
>PRK00106 hypothetical protein; Provisional
Probab=26.03 E-value=1.2e+03 Score=28.67 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002819 674 EIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (876)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~ 707 (876)
+|...+.++..+++++..+..+..++-....|-+
T Consensus 133 eLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt 166 (535)
T PRK00106 133 SLTDKSKHIDEREEQVEKLEEQKKAELERVAALS 166 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4444455555555555555555555555444433
No 371
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=25.95 E-value=1.1e+03 Score=27.71 Aligned_cols=112 Identities=24% Similarity=0.294 Sum_probs=68.8
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCCC-
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL-QAERDLRAALEVGLSMSSGQFS- 659 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL-~~E~~l~~~Le~al~~~~~~~~- 659 (876)
+.-.=|+.+.++|+.+-. ..| ..+.+|=....+-|..|+-.+.+--+.. +.|-++ .+||.||.-..|+|.
T Consensus 253 ~l~~~l~~tan~lr~Q~~---~ve----~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I-~~le~airdK~~pLKV 324 (421)
T KOG2685|consen 253 ALDQTLRETANDLRTQAD---AVE----LAFKKRIRETQDARNKLEWQLAKTLEEIADAENNI-EALERAIRDKEGPLKV 324 (421)
T ss_pred HHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhcccccHHH
Confidence 333445566666665432 222 3345666667777777776665533333 334443 457777766666553
Q ss_pred ----------CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 660 ----------SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 660 ----------~~---~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
=| -+-+.--..|+.||-.|...|..|++++.+-+..|.--.+
T Consensus 325 AqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 325 AQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred HHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2344455689999999999999999999887766554443
No 372
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=25.88 E-value=1.3e+02 Score=35.43 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 629 DVSRLQEQLQAERDLRAALEVGLSMSSGQ---FSSS--RGMDSKTRAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 629 eV~~Lq~qL~~E~~l~~~Le~al~~~~~~---~~~~--~~~p~~~~~ll~eia~~E~~v~~Le~~v 689 (876)
|..-|-.+|-.|+.|..+||.||-+..-. ...| ...+.-..++=..|+.|.-||.+|+-++
T Consensus 308 dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E~ 373 (418)
T TIGR03755 308 DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTEL 373 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999998543222 2233 2234334444445555555555555443
No 373
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.84 E-value=2e+02 Score=28.93 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=36.5
Q ss_pred hhhhHHHHHHH-HHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 002819 588 EITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD-LRAALEV 649 (876)
Q Consensus 588 ~~~~~~~~~~~-~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~-l~~~Le~ 649 (876)
-..-.+||.+| +|..-=||.+++. .+=.++-.+|-+|+..|+.+|.+++. ++..++.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~-----~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTAN-----PPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566555 6666666666554 22344567899999999999998875 3444444
No 374
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.76 E-value=1.1e+03 Score=27.37 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhh
Q 002819 666 SKTRAELEEIALAEADVARL--------------KQKVAELHHQLNQQRQH 702 (876)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~L--------------e~~v~~l~~~l~~~~~~ 702 (876)
+-.+.|..+++.+|.++..| +.++..|+.+|.++...
T Consensus 254 ~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~ 304 (444)
T TIGR03017 254 PIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKK 304 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888876665 44677777777665543
No 375
>PF13514 AAA_27: AAA domain
Probab=25.66 E-value=9.1e+02 Score=32.06 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=27.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 660 ~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
+|.........+..+++.++..+..++.++..|..++..
T Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 236 FPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666777777888888877777777777665543
No 376
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.58 E-value=2.6e+02 Score=29.58 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 674 EIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
.+..+.+||..+|+||.-|..-|..-.
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999998885433
No 377
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=25.58 E-value=1.7e+02 Score=37.11 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=3.3
Q ss_pred HHHHHhHh
Q 002819 580 EELAIQRL 587 (876)
Q Consensus 580 ~~~~~~~~ 587 (876)
|+.+..+|
T Consensus 730 dDe~m~~l 737 (784)
T PF04931_consen 730 DDEQMMAL 737 (784)
T ss_pred CHHHHHHH
Confidence 33344444
No 378
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=25.52 E-value=1.4e+02 Score=35.02 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002819 628 QDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 628 qeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
.|+++|.+.|.+|+.||.-||-
T Consensus 594 kel~kl~~dleeek~mr~~lem 615 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRSNLEM 615 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhhHh
Confidence 4677788888888888876653
No 379
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=25.44 E-value=1.6e+02 Score=31.60 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCCCC
Q 002819 625 ALEQDVSRLQEQLQ--AERDLRAALEVGLSMSSGQF 658 (876)
Q Consensus 625 ~LeqeV~~Lq~qL~--~E~~l~~~Le~al~~~~~~~ 658 (876)
.|-|.|.+||.||. +|+++|++.-+-.......+
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~l 109 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLL 109 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 48899999999996 79999999988776655433
No 380
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.26 E-value=1.1e+03 Score=28.03 Aligned_cols=110 Identities=27% Similarity=0.329 Sum_probs=68.4
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhH---hHhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 002819 580 EELAIQRLEITKNDLRHRIAKEARGNAIL---QASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVG--- 650 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~---q~~~~~rk~---~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~a--- 650 (876)
|=...||.|..--|||.|+.|+--+|..+ -..||++-. .|.+-|.-+|.+-.+ + +=..||.+|++|
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--k---elE~lR~~L~kAEke 324 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--K---ELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--H---HHHHHHHHHHHHHHH
Confidence 44567889999999999997765554433 233444433 345555556655544 2 334688888887
Q ss_pred hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 651 LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 651 l~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
|...+ +-+-|...|..|.= .-|.||.+++.|-.+...||-..+.
T Consensus 325 le~nS-----~wsaP~aLQ~wLq~--T~E~E~q~~~kkrqnaekql~~Ake 368 (575)
T KOG4403|consen 325 LEANS-----SWSAPLALQKWLQL--THEVEVQYYNKKRQNAEKQLKEAKE 368 (575)
T ss_pred HHhcc-----CCCCcHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33222 35567778888863 4566777777776666666654443
No 381
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=25.06 E-value=2.3e+02 Score=34.79 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 616 k~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
++.--++-+.||.||.+||++= ..||.|=..+..++-.+.+++.+|++.
T Consensus 506 RKRKLd~I~nLE~ev~~l~~eK-------------------------------eqLl~Er~~~d~~L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 506 RKRKLDCILNLEDEVEKLQKEK-------------------------------EQLLRERDELDSTLGVMKQQLSELYQE 554 (604)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467788999999998752 256677777777888899999999999
Q ss_pred HHHHHhhhc
Q 002819 696 LNQQRQHHY 704 (876)
Q Consensus 696 l~~~~~~~~ 704 (876)
++++-...-
T Consensus 555 Vf~~lrd~e 563 (604)
T KOG3863|consen 555 VFQQLRDEE 563 (604)
T ss_pred HHHHHhccc
Confidence 999876433
No 382
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.83 E-value=1.6e+02 Score=26.81 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=29.0
Q ss_pred HHhHhhhhhHHHHHHH---HHHhhhhh----hHhHhHHHhHHHHHHH
Q 002819 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~n~----~~q~~~~~rk~~~~~~ 622 (876)
-|+|||.-|.++...| -.||||+- ++-.-+.-||..-.+|
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56899884 4555556666655444
No 383
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.70 E-value=4.9e+02 Score=28.98 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
++++|++..|.+|..+.++|.+++.+|.+--.
T Consensus 211 ~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 211 ELEEELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666555443
No 384
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.51 E-value=8.4e+02 Score=25.86 Aligned_cols=74 Identities=26% Similarity=0.245 Sum_probs=45.7
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~----------~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
+.|.---+||+-|.-+...|+.--..=+-||+-|..+.... +.-=.+|+.+-..+|.||.+=..==..|+
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778999999999999765555556888877665532 22223355555555555554333333455
Q ss_pred Hhhc
Q 002819 649 VGLS 652 (876)
Q Consensus 649 ~al~ 652 (876)
...+
T Consensus 182 ~q~~ 185 (192)
T PF11180_consen 182 RQAN 185 (192)
T ss_pred HHhc
Confidence 5554
No 385
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.45 E-value=5.6e+02 Score=23.90 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
..|=..+..+|.+|.+|+.++..+..++...+.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777777777777777665543
No 386
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.41 E-value=5.7e+02 Score=23.69 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=47.8
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~----------~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
.+|.++|....+++..+.+-++.=++++..+-|-.. +.....-+|..|+..|..++.+...+-.-|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 368889999999999988888887777655433222 22333556888888888888877666655544
No 387
>KOG0689 consensus Guanine nucleotide exchange factor for Rho and Rac GTPases [Signal transduction mechanisms]
Probab=24.35 E-value=60 Score=38.41 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=32.2
Q ss_pred CCceEEEEecCCCCCc-eEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 86 DKKLLTVLFPDGRDGR-AFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gR-ty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.....|.++......+ +|.++|-+.++.+.|+.+|...+-
T Consensus 321 ~s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~ 361 (448)
T KOG0689|consen 321 NSASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLW 361 (448)
T ss_pred CCCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHH
Confidence 4455688877665444 799999999999999999988763
No 388
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.17 E-value=79 Score=32.56 Aligned_cols=38 Identities=26% Similarity=0.587 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 592 ~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
.|+..|....+..||.|..-|. -|..|..+|.||+..|
T Consensus 3 eD~EsklN~AIERnalLE~ELd--------EKE~L~~~~QRLkDE~ 40 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELD--------EKENLREEVQRLKDEL 40 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHCH-------
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 3677888888888999988883 3555666666666654
No 389
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.80 E-value=4.6e+02 Score=32.77 Aligned_cols=88 Identities=23% Similarity=0.221 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhhhhHhHhHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHH--------HH-------HHHHH
Q 002819 593 DLRHRIAKEARGNAILQASLERRKQAL-----------HERRLALEQDVSRLQEQLQA--------ER-------DLRAA 646 (876)
Q Consensus 593 ~~~~~~~~~~~~n~~~q~~~~~rk~~~-----------~~~r~~LeqeV~~Lq~qL~~--------E~-------~l~~~ 646 (876)
.+|.+|+.----|+.+||++..-+..+ +++...|=|.|..|+..|+. |- +|.+-
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR 620 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666544445778888887666644 44455577777777776653 21 23333
Q ss_pred HHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 002819 647 LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (876)
Q Consensus 647 Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~ 683 (876)
|+.|=.+. -.+...+|.-|+-||--|..|-++..
T Consensus 621 lqaaE~R~---eel~q~v~~TTrPLlRQIE~lQ~tl~ 654 (961)
T KOG4673|consen 621 LQAAERRC---EELIQQVPETTRPLLRQIEALQETLS 654 (961)
T ss_pred HHHHHHHH---HHHHhhccccccHHHHHHHHHHHHHh
Confidence 44443222 12345677788889999988877653
No 390
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=23.70 E-value=5e+02 Score=25.09 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
+|+.=-.|.++|.+|++-+. +...++=. +-+++-..+-||...|+-||..+..|+..|.+++-
T Consensus 6 ~~~q~~~l~~~v~~lRed~r------~SEdrsa~-------SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIR------RSEDRSAA-------SRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 45555667778887776655 22222110 11334456679999999999999999999988764
No 391
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.69 E-value=1.9e+02 Score=35.96 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=26.6
Q ss_pred HHHhhhhhhHhHhHHHh-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 599 AKEARGNAILQASLERR-----KQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 599 ~~~~~~n~~~q~~~~~r-----k~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
-+-+|||-.+-...+.. +...-.+|.+|+++|++|+..+++
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~ 97 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQE 97 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578887654443332 223334788999999999877654
No 392
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=23.65 E-value=5 Score=49.38 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=54.5
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCe-eeEecCCCCCCCCCCcceeeeeCcEEeCCCcce--eeccCCceEEEEec
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTS-LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--VVREDKKLLTVLFP 95 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~-L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv--~~~~~Kk~~fvIt~ 95 (876)
+++.| ...+....+..|+.|++.+++.. ++|-+..... ....+++...... ........|.+|++
T Consensus 2 ~~~rg--l~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g~----------~~~~~d~t~a~~~eSs~~n~~~sf~vi~~ 69 (1099)
T KOG1170|consen 2 VVTRG--LDNDVDNEREAWKQSILRAKDRMPEKVAKTASGP----------LFALLDLTSAHVAESSTNNPRPSFCVITP 69 (1099)
T ss_pred ccccc--cccccccHHHHHHHHHHHHHHHHHHHHHhccCCc----------cHHHHhcccccccccccCCCCCCeeEecc
Confidence 45556 22233334667999999998875 6666654432 2223334332210 01112222335555
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 96 ~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
. +...++|++-.+|..|+.+++..-.
T Consensus 70 ~----rk~r~~adn~ke~e~wi~~~kt~q~ 95 (1099)
T KOG1170|consen 70 V----RKHRLCADNRKEMEKWINQSKTPQH 95 (1099)
T ss_pred c----HHhhhhccchhHHHHhhccccchhh
Confidence 3 8899999999999999999987754
No 393
>PRK03918 chromosome segregation protein; Provisional
Probab=23.61 E-value=1.4e+03 Score=29.12 Aligned_cols=9 Identities=0% Similarity=-0.237 Sum_probs=4.6
Q ss_pred hhhHhhccc
Q 002819 313 AVAACMAPL 321 (876)
Q Consensus 313 NLAi~FaP~ 321 (876)
+..+.|.|-
T Consensus 16 ~~~i~f~~g 24 (880)
T PRK03918 16 SSVVEFDDG 24 (880)
T ss_pred CceEecCCC
Confidence 344566553
No 394
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.60 E-value=2.5e+02 Score=25.31 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=25.7
Q ss_pred HHhHhhhhhHHHHHHHH---HHhhhhh----hHhHhHHHhHHH
Q 002819 583 AIQRLEITKNDLRHRIA---KEARGNA----ILQASLERRKQA 618 (876)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~n~----~~q~~~~~rk~~ 618 (876)
-|+|||.-|..+...|. .|||+|- +|-.-+.-||..
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d 54 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKD 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCC
Confidence 48999999999998884 5888874 444444545544
No 395
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.47 E-value=1e+02 Score=33.77 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002819 617 QALHERRLALEQDVSRLQE 635 (876)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~ 635 (876)
+.|.+||.+|+.+|++|..
T Consensus 7 ~eL~qrk~~Lq~eIe~Ler 25 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLER 25 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998864
No 396
>PRK11020 hypothetical protein; Provisional
Probab=23.39 E-value=2.9e+02 Score=26.78 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.|.+|+.+|..+|.. +|.=|..|..+. =+..+.++..||+.|+.+|.+|..+-. +.|+.|++
T Consensus 2 ~~K~Eiq~L~drLD~---~~~Klaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~~~---~~lske~~ 63 (118)
T PRK11020 2 VEKNEIKRLSDRLDA---IRHKLAAASLRG---------DAEKYAQFEKEKATLEAEIARLKEVQS---QKLSKEAQ 63 (118)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 367888889888875 444444444321 123344555555555555555544321 34444444
No 397
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.27 E-value=3.1e+02 Score=30.47 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 002819 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-------IALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 624 ~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~e-------ia~~E~~v~~Le~~v~~l~~~l 696 (876)
++|-+-=+.|-..|.+|..+|.+...|+.++.-.-.+-..|=.-++++..+ |.-|+.|.++||.|+.--+..|
T Consensus 127 seit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666778888888888888888888875532222223333334444444 4455555566666666666666
Q ss_pred HHHHhhhcCCcc
Q 002819 697 NQQRQHHYGSLS 708 (876)
Q Consensus 697 ~~~~~~~~~s~~ 708 (876)
-+.+. |.-+++
T Consensus 207 ER~qK-RL~sLq 217 (267)
T PF10234_consen 207 ERNQK-RLQSLQ 217 (267)
T ss_pred HHHHH-HHHHHH
Confidence 54444 444554
No 398
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=23.22 E-value=3.4e+02 Score=32.46 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
+++|-.+||++++.++++|.+-.. .....++..+++.++..+..|++++.-|+.-|.+
T Consensus 168 ~~~Rl~~L~~qi~~~~~~l~~~~~----------------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 168 IQERLDELEEQIEKHEEKLGELEL----------------------NPDDPELKSDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc----------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777776654221 2233455566666666666666666666665555
Q ss_pred HHhh
Q 002819 699 QRQH 702 (876)
Q Consensus 699 ~~~~ 702 (876)
-...
T Consensus 226 l~~~ 229 (475)
T PF10359_consen 226 LEDS 229 (475)
T ss_pred Hhhh
Confidence 4444
No 399
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.17 E-value=1.8e+02 Score=34.68 Aligned_cols=19 Identities=5% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~ 638 (876)
..+..+||++++.|+.+++
T Consensus 75 Q~kasELEKqLaaLrqElq 93 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455667777777755444
No 400
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.16 E-value=9.7e+02 Score=30.13 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=31.7
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhh----hhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEAR----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~----~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~ 646 (876)
+..|+.|.....+|+.+++.... .+-.+|+- +.++.+-+.++++++.++...++.|...-.+
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l----~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~ 352 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLSTTMLANHPRVVAA----KSSLADLDAQIRSELQKITKSLLMQADAAQA 352 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888877778777764322 12223222 2333334444555555555544444443333
No 401
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=22.76 E-value=2.9e+02 Score=27.78 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=20.8
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHHHHH
Q 002819 662 RGMDSKTRAELEEIAL-AEADVARLKQ 687 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~-~E~~v~~Le~ 687 (876)
..-++...++|.||.+ +|.|++||++
T Consensus 113 ~s~Dp~L~~vL~eIELRa~VELAKl~~ 139 (139)
T PF10768_consen 113 SSGDPRLDAVLDEIELRAEVELAKLGR 139 (139)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhccC
Confidence 3347788899999987 7888888874
No 402
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=22.76 E-value=2.4e+02 Score=26.37 Aligned_cols=29 Identities=45% Similarity=0.640 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhhc
Q 002819 624 LALEQDVSRLQEQLQ------AERDLRAALEVGLS 652 (876)
Q Consensus 624 ~~LeqeV~~Lq~qL~------~E~~l~~~Le~al~ 652 (876)
..+..++++||+||. .|+=-|.||..+|.
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLg 40 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIALKAGLG 40 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 346667778888775 47778888888875
No 403
>PRK11239 hypothetical protein; Provisional
Probab=22.57 E-value=1.1e+02 Score=32.62 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
..++.||++|..||++|.+|+.+|.+-+.
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999887655
No 404
>PRK11281 hypothetical protein; Provisional
Probab=22.55 E-value=9.5e+02 Score=32.08 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 664 MDSKTRAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~v 689 (876)
-|.....|-+|.+++++.+..+++..
T Consensus 190 ~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 190 RPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888999988777776654
No 405
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.52 E-value=4.9e+02 Score=30.88 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=57.3
Q ss_pred hHhHhHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 002819 607 ILQASLERRK--QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVAR 684 (876)
Q Consensus 607 ~~q~~~~~rk--~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~ 684 (876)
+++.+|.+|+ ...-+.=.+|+.+..+|+.+++.=+..|..|-..+++... .... .+.+|++|+..+=.++..
T Consensus 13 ~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~-----~~~~-~~~~l~~e~~~l~~~l~~ 86 (429)
T COG0172 13 AVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALK-----RGED-DAEELIAEVKELKEKLKE 86 (429)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccch-hHHHHHHHHHHHHHHHHh
Confidence 4566666664 3334455556666666666666666666666666652211 1122 677899999988888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002819 685 LKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 685 Le~~v~~l~~~l~~~~~ 701 (876)
||.++.++..+|..-.-
T Consensus 87 ~e~~~~~~~~~l~~~ll 103 (429)
T COG0172 87 LEAALDELEAELDTLLL 103 (429)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 98888888888766554
No 406
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=22.32 E-value=7.2e+02 Score=24.07 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=31.0
Q ss_pred CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
+..+.|.+... .+..-|.|++..+-+.|++.|+..|..
T Consensus 68 ~~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 68 EERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred ceEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 35567777543 478999999999999999999999864
No 407
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.03 E-value=5.3e+02 Score=25.49 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--cC-CCCCCCCC-----C-------CCChhHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG-L--SM-SSGQFSSS-----R-------GMDSKTRAELEEIALAEAD 681 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~a-l--~~-~~~~~~~~-----~-------~~p~~~~~ll~eia~~E~~ 681 (876)
.++.|..+|++||+..+.+++. |..|..-. | .- ..-++.+. . .|-.....+..+|+.||.+
T Consensus 27 rl~~R~~~lk~dik~~k~~~en---ledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIEN---LEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999875 33332221 2 11 11122211 1 1222333455667777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002819 682 VARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 682 v~~Le~~v~~l~~~l~~~ 699 (876)
+-..+..+.+|+..||.-
T Consensus 104 ~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 104 LESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777753
No 408
>PRK11820 hypothetical protein; Provisional
Probab=21.98 E-value=6.1e+02 Score=28.42 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=54.2
Q ss_pred hhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChh
Q 002819 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSK 667 (876)
Q Consensus 588 ~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~ 667 (876)
++.+.-|..-+..-.++=+.|++-+..|-..+...-..++.......++.++ .|+.=|+..+. .+++
T Consensus 133 ~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~--rL~~rl~el~~----------~~d~- 199 (288)
T PRK11820 133 AALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRE--RLRERLEELLG----------ELDE- 199 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH--HHHHHHHHHHh----------hcCH-
Confidence 4445555665666667777788888877777666544444333222222211 11111111110 0222
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 002819 668 TRAELEEIAL------AEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 668 ~~~ll~eia~------~E~~v~~Le~~v~~l~~~l~~ 698 (876)
..++.|+|+ +-+||.+|..|+..++.-|..
T Consensus 200 -~Rl~qEval~adK~DI~EEi~RL~sHl~~f~~~L~~ 235 (288)
T PRK11820 200 -NRLEQEVALLAQKADIAEELDRLKSHLKEFREILKK 235 (288)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhc
Confidence 356666666 578999999999988887744
No 409
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.87 E-value=7.8e+02 Score=24.32 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
++-.|++.+++....|+.++..+...+..++.
T Consensus 84 ~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 84 ELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666666655
No 410
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.68 E-value=5.9e+02 Score=22.81 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=38.1
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (876)
|-|..|.+|..--=+|.-||-- -...||......-+++...=.+|.-+|..|++.|++-+.+=.-+++|+.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~f---Lee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYF---LEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH---HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777666677777721 0011222222223334444455777777777777766666555555553
No 411
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.67 E-value=5.2e+02 Score=23.58 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
++.|.+|.+++..||..|+ +|+..|..+..+..+|+++=.-|+.=+..-
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~-------------------------------~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLE-------------------------------ALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888774 677777777888777777766666555443
No 412
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.58 E-value=8.5e+02 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLER 614 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~ 614 (876)
+..++.++....+-...-.|=+|...+||-.|..
T Consensus 151 ~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 151 QLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 3444444444444444444455555555555544
No 413
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=21.58 E-value=33 Score=34.43 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=19.6
Q ss_pred CCCcEEEEEEEeCCeeeEecCCC
Q 002819 34 WKSWKKRWFILTRTSLVFFKNDP 56 (876)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~ 56 (876)
.+.|-|+|+++....|.+||=-+
T Consensus 28 VRrWEKKwVtvgDTslRIyKWVP 50 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWVP 50 (165)
T ss_pred HHHHhhheEeecccceEEEEeee
Confidence 56799999999999999999543
No 414
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=21.51 E-value=2.1e+02 Score=31.19 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 616 k~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
++.++-+-..|--.|-.||-||+..-..|+-|..+++ -+.-+-..|-.|.-||...--.+.-+|+=|+.|| .--.+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~d---Ea~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~-AslV~ 86 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRD---EATRLQDELQGKLEELQKKQHEANLAVTPLKAKL-ASLVQ 86 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHH-HHHHH
Q ss_pred HHHHHh
Q 002819 696 LNQQRQ 701 (876)
Q Consensus 696 l~~~~~ 701 (876)
=+++||
T Consensus 87 kc~eRn 92 (277)
T PF15030_consen 87 KCRERN 92 (277)
T ss_pred HHHHHH
No 415
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.22 E-value=97 Score=39.39 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.8
Q ss_pred cCccccCCC
Q 002819 199 EGILRQAAD 207 (876)
Q Consensus 199 EGIFRisGs 207 (876)
-|.|.-+|+
T Consensus 1271 ~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1271 GGGFHPSGN 1279 (1516)
T ss_pred cccccCCCc
Confidence 344444443
No 416
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=21.05 E-value=1.5e+02 Score=35.46 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=56.1
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
+.|+..|...+.-+|. .-+-|||+|-...|.|+.-.+... ....+-.+++.|+.++.-.. .+..+..|.|.-
T Consensus 308 G~iiymg~v~Vqy~~a---d~~dRy~~LF~~~llflsvs~rMs-~fIyegKlp~tG~iV~klEd---te~~~nafeis~- 379 (661)
T KOG2070|consen 308 GNIIYMGQVLVQYAGA---DEKDRYLLLFPNVLLFLSVSPRMS-GFIYEGKLPTTGMIVTKLED---TENHRNAFEISG- 379 (661)
T ss_pred cceEeeeehhhhhcCc---chhhheeeeccceeeeeEeccccc-hhhhccccccceeEEeehhh---hhcccccccccc-
Confidence 4466666444333332 235899999999999888765542 00111134555555543221 123334455531
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHH
Q 002819 97 GRDGRAFTLKAETSEDLYEWKTALEL 122 (876)
Q Consensus 97 ~~~gRty~LqAdSeeE~~eWI~AIr~ 122 (876)
..-......|.++.++++|+.++..
T Consensus 380 -~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 380 -STIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred -cchhheeeccCChHHHHHHHHHhhh
Confidence 1112356678999999999999996
No 417
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.00 E-value=6.3e+02 Score=22.91 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CC-CC-CCCCChhH----HHHHHHHHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG--QF-SS-SRGMDSKT----RAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~--~~-~~-~~~~p~~~----~~ll~eia~~E~~v~~Le~~v 689 (876)
.++.....+.+....|..++++=......|+.. ... .+ .+ +.++.... ..|=..++.++.+|.+|+.+.
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l---~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKL---DDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---STT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777775433333334332 222 11 12 23443333 334455677888888888888
Q ss_pred HHHHHHHHHHHhh
Q 002819 690 AELHHQLNQQRQH 702 (876)
Q Consensus 690 ~~l~~~l~~~~~~ 702 (876)
..+..++......
T Consensus 86 ~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 86 KYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777665543
No 418
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.79 E-value=9e+02 Score=24.60 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGL---SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al---~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
.+..+.+++++|.....-|..+.... ....|.+..|.-+-. --...+++..++..|..|+.++..|...+.
T Consensus 103 ~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~D-y~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 103 REEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRD-YDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666666666666666665544 334455555544422 234567788888888888888888876654
No 419
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=20.44 E-value=5.3e+02 Score=32.20 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhcCCccchhhhh
Q 002819 679 EADVARLKQKVAELHHQLNQQR-QHHYGSLSDACDRY 714 (876)
Q Consensus 679 E~~v~~Le~~v~~l~~~l~~~~-~~~~~s~~~~~~~~ 714 (876)
+..+..|++.+..+...++++. -.++||.+.+..+.
T Consensus 606 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (657)
T PTZ00186 606 AAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQ 642 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHH
Confidence 3334445555555555554433 34556665555433
No 420
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=20.42 E-value=4.7e+02 Score=24.86 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=23.9
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhH
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRK 616 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk 616 (876)
|.+|.+....+..-|......|..|++.+..=+
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r 59 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNR 59 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777766777778878888888888766433
No 421
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.40 E-value=4.6e+02 Score=27.25 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=0.0
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHH
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~ 619 (876)
|+-++..-..||.-++.=-|.++.|+..|-.-...+
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDEL 104 (194)
T ss_dssp ------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 444455555555555555566666665554433333
No 422
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.37 E-value=4.2e+02 Score=29.55 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=39.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~Le~~v 689 (876)
.|++-|+....|.++||---+-||+|=|+..+-+.-. .+|.+-...|. ....+...-+.|--|+.+=|.-|..||-++
T Consensus 26 QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~-s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl 104 (307)
T PF10481_consen 26 QLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY-SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQL 104 (307)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 3455555555555555555555555544433222100 11111111111 122333444555666666666666666666
Q ss_pred HHHHHHHH
Q 002819 690 AELHHQLN 697 (876)
Q Consensus 690 ~~l~~~l~ 697 (876)
...+.+|.
T Consensus 105 ~s~Kkqie 112 (307)
T PF10481_consen 105 NSCKKQIE 112 (307)
T ss_pred HHHHHHHH
Confidence 66555543
No 423
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.32 E-value=8.7e+02 Score=24.25 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
.|..+-..||.+|.+|+.+|..=...-..-+.... .+-.|=.-|.+||+++...+..+...-..|.
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~--------------~~E~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS--------------NAEQLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666543322222221111 1124445567777777777777766665554
Q ss_pred H
Q 002819 698 Q 698 (876)
Q Consensus 698 ~ 698 (876)
+
T Consensus 105 e 105 (143)
T PF12718_consen 105 E 105 (143)
T ss_pred H
Confidence 3
No 424
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=20.05 E-value=1.6e+03 Score=27.35 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002819 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (876)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~ 657 (876)
.+++..-..|+..+.++.....++......-+.. +...+.+.+++.+..+|++..+++......-.....
T Consensus 273 ~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~-----~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~----- 342 (582)
T PF09731_consen 273 EEEEELERALEEQREELLSKLREELEQELEEKRA-----ELEEELREEFEREREELEEKYEEELRQELKRQEEAH----- 342 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002819 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (876)
Q Consensus 658 ~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~ 705 (876)
.+.|-.+|...+.+..+- ....+...+.+||+.+.+
T Consensus 343 ----------~~~l~~~l~~~~~e~~~~--~~~~i~~~v~~Er~~~~~ 378 (582)
T PF09731_consen 343 ----------EEHLKNELREQAIELQRE--FEKEIKEKVEQERNGRLA 378 (582)
T ss_pred ----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Done!