Query 002819
Match_columns 876
No_of_seqs 484 out of 2467
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 02:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 1.1E-40 3.6E-45 346.0 17.0 205 152-375 6-214 (214)
2 3msx_B RHO GTPase-activating p 100.0 1.2E-40 4.2E-45 342.0 16.5 196 159-372 6-201 (201)
3 2ee4_A RHO GTPase activating p 100.0 2.3E-40 7.8E-45 342.3 16.4 197 161-376 8-206 (209)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 5.4E-40 1.8E-44 344.2 16.7 209 154-376 10-223 (229)
5 2osa_A N-chimaerin; RHO-GAP, G 100.0 3.9E-39 1.3E-43 331.4 18.6 192 163-372 6-202 (202)
6 1tx4_A P50-rhogap; complex (GT 100.0 1.9E-39 6.7E-44 332.7 16.3 193 159-372 2-198 (198)
7 3fk2_A Glucocorticoid receptor 100.0 1.6E-39 5.3E-44 344.4 15.8 196 160-374 48-245 (246)
8 1f7c_A Rhogap protein; GTPase 100.0 2.3E-39 7.8E-44 340.0 15.7 194 164-376 17-220 (231)
9 1ow3_A RHO-GTPase-activating p 100.0 1.9E-38 6.4E-43 335.3 16.3 197 159-376 38-238 (242)
10 1pbw_A Rhogap domain, phosphat 100.0 4.5E-38 1.5E-42 326.9 12.9 191 163-376 5-202 (216)
11 3kuq_A RHO GTPase-activating p 100.0 1.9E-37 6.4E-42 324.9 17.5 209 161-371 16-228 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.2E-36 4.1E-41 312.9 17.0 191 168-375 4-197 (201)
13 3eap_A RHO GTPase-activating p 100.0 2.7E-36 9.4E-41 323.8 14.9 200 159-376 58-261 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 7.4E-35 2.5E-39 334.4 16.6 192 163-372 267-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 6.2E-36 2.1E-40 310.7 3.4 192 162-376 19-213 (214)
16 3qis_A Inositol polyphosphate 100.0 4.3E-31 1.5E-35 294.7 16.3 141 179-327 198-338 (366)
17 1wi1_A Calcium-dependent activ 99.7 1E-16 3.4E-21 152.6 12.4 103 16-127 5-112 (126)
18 1v88_A Oxysterol binding prote 99.7 1.2E-16 4E-21 153.4 12.8 103 14-128 3-127 (130)
19 1x1f_A Signal-transducing adap 99.7 2.6E-16 8.7E-21 154.6 14.4 95 17-125 16-113 (149)
20 1dyn_A Dynamin; signal transdu 99.6 6.4E-16 2.2E-20 145.9 12.0 99 18-123 11-115 (125)
21 2da0_A 130-kDa phosphatidylino 99.6 8.9E-16 3.1E-20 142.6 12.3 100 12-127 3-103 (114)
22 1pls_A Pleckstrin homology dom 99.6 1.1E-15 3.6E-20 141.1 12.6 98 17-127 3-103 (113)
23 1wgq_A FYVE, rhogef and PH dom 99.6 9.2E-16 3.1E-20 140.8 12.0 100 15-127 4-105 (109)
24 2rsg_A Collagen type IV alpha- 99.6 3.3E-16 1.1E-20 140.2 8.7 92 19-123 1-92 (94)
25 2d9v_A Pleckstrin homology dom 99.6 2E-15 6.9E-20 143.8 14.4 107 14-126 3-115 (130)
26 1v5u_A SBF1, SET binding facto 99.6 7.4E-16 2.5E-20 142.4 10.8 102 14-129 3-115 (117)
27 1v89_A Hypothetical protein KI 99.6 1.7E-15 5.7E-20 139.8 13.0 108 15-129 4-116 (118)
28 2dn6_A KIAA0640 protein; PH do 99.6 2.2E-15 7.6E-20 138.8 13.2 99 14-126 3-104 (115)
29 2cod_A Centaurin-delta 1; ARF 99.6 1.8E-15 6.2E-20 140.1 12.6 97 14-126 3-100 (115)
30 2dhk_A TBC1 domain family memb 99.6 1.6E-15 5.5E-20 142.1 11.7 97 15-125 4-104 (119)
31 1v5p_A Pleckstrin homology dom 99.6 2.2E-15 7.7E-20 143.7 12.5 102 15-126 11-121 (126)
32 2i5f_A Pleckstrin; PH domain, 99.6 3.6E-15 1.2E-19 136.1 13.4 97 15-124 3-108 (109)
33 1fgy_A GRP1; PH domain, signal 99.6 2.8E-15 9.7E-20 140.3 13.0 101 17-128 3-123 (127)
34 1eaz_A Tandem PH domain contai 99.6 2E-15 6.7E-20 141.2 11.6 99 14-126 9-112 (125)
35 1fao_A Dual adaptor of phospho 99.6 2.6E-15 8.9E-20 141.1 12.2 99 14-126 13-113 (126)
36 1wjm_A Beta-spectrin III; PH d 99.6 1.6E-15 5.6E-20 142.4 10.2 110 14-128 3-120 (123)
37 2lul_A Tyrosine-protein kinase 99.6 5.9E-15 2E-19 146.7 14.7 117 14-142 10-137 (164)
38 2w2x_D 1-phosphatidylinositol- 99.6 3.7E-16 1.3E-20 148.1 5.2 107 15-127 8-121 (124)
39 2p0d_A RHO GTPase-activating p 99.6 2.3E-15 7.8E-20 143.7 10.7 115 11-127 4-126 (129)
40 1x1g_A Pleckstrin 2; PH domain 99.6 7.2E-15 2.5E-19 138.5 13.9 103 10-125 9-124 (129)
41 2yry_A Pleckstrin homology dom 99.6 1.4E-14 4.7E-19 135.0 15.5 99 14-125 17-120 (122)
42 3cxb_B Pleckstrin homology dom 99.6 4.7E-15 1.6E-19 138.1 12.3 95 20-126 1-102 (112)
43 1x05_A Pleckstrin; PH domain, 99.6 5.9E-15 2E-19 139.2 13.0 100 14-126 13-121 (129)
44 1unq_A RAC-alpha serine/threon 99.6 2.5E-15 8.7E-20 141.2 9.8 106 16-127 5-112 (125)
45 4a6h_A Phosphatidylinositol 4, 99.6 3.6E-15 1.2E-19 141.3 10.8 100 19-124 6-117 (120)
46 2dkp_A Pleckstrin homology dom 99.6 1.3E-14 4.3E-19 136.4 14.0 99 14-125 16-119 (128)
47 1u5d_A SKAP55, SRC kinase-asso 99.6 7.3E-15 2.5E-19 133.2 12.0 97 18-125 2-105 (108)
48 1upq_A PEPP1; PH domain, phosp 99.6 1E-14 3.4E-19 136.1 13.1 103 14-125 6-109 (123)
49 1btk_A Bruton'S tyrosine kinas 99.6 3.8E-15 1.3E-19 149.0 10.6 104 18-129 2-136 (169)
50 2cof_A Protein KIAA1914; PH do 99.6 4.1E-15 1.4E-19 136.5 9.2 98 15-125 4-101 (107)
51 2d9x_A Oxysterol binding prote 99.6 3.8E-15 1.3E-19 139.4 9.2 100 15-126 4-105 (120)
52 2j59_M RHO-GTPase activating p 99.6 9.1E-15 3.1E-19 144.7 12.1 104 18-127 2-113 (168)
53 2d9y_A Pleckstrin homology dom 99.6 1.4E-14 4.7E-19 133.9 12.4 102 15-125 7-109 (117)
54 3aj4_A Pleckstrin homology dom 99.6 1E-14 3.4E-19 134.3 11.4 103 17-125 3-111 (112)
55 3pp2_A RHO GTPase-activating p 99.6 1.3E-14 4.6E-19 137.5 12.5 107 15-125 4-123 (124)
56 2y7b_A Actin-binding protein a 99.6 3.9E-15 1.3E-19 141.2 8.5 101 16-125 2-128 (134)
57 1wg7_A Dedicator of cytokinesi 99.6 6.4E-15 2.2E-19 142.9 9.8 101 15-126 14-125 (150)
58 2coc_A FYVE, rhogef and PH dom 99.6 1.7E-14 5.7E-19 135.2 11.9 99 16-125 5-106 (112)
59 1u5f_A SRC-associated adaptor 99.6 2.3E-14 7.9E-19 138.9 13.0 100 15-125 13-119 (148)
60 2rlo_A Centaurin-gamma 1; spli 99.5 2.8E-14 9.6E-19 135.3 11.5 104 18-125 3-124 (128)
61 1dro_A Beta-spectrin; cytoskel 99.5 2E-14 6.9E-19 135.2 10.0 110 14-126 3-120 (122)
62 3rcp_A Pleckstrin homology dom 99.5 2.7E-14 9.1E-19 129.5 10.2 94 21-126 1-94 (103)
63 1btn_A Beta-spectrin; signal t 99.5 4E-14 1.4E-18 128.4 10.2 98 21-123 1-106 (106)
64 1u5e_A SRC-associated adaptor 99.5 4.7E-14 1.6E-18 146.0 12.0 98 17-125 104-208 (211)
65 3a8p_A T-lymphoma invasion and 99.5 1.1E-13 3.9E-18 147.7 12.1 109 15-128 7-127 (263)
66 4h8s_A DCC-interacting protein 99.5 7.6E-14 2.6E-18 157.3 11.3 104 14-127 296-400 (407)
67 3tfm_A Myosin X; split PH doma 99.5 1.2E-13 4.1E-18 144.3 11.9 98 16-127 55-157 (228)
68 2q13_A DCC-interacting protein 99.4 3.6E-13 1.2E-17 150.7 11.3 98 17-126 276-376 (385)
69 2r09_A Cytohesin-3; autoinhibi 99.4 4.9E-13 1.7E-17 148.1 12.0 102 18-130 212-333 (347)
70 2dtc_A RAL guanine nucleotide 99.4 1.3E-12 4.3E-17 124.8 12.8 103 20-127 2-114 (126)
71 3lju_X ARF-GAP with dual PH do 99.4 7.2E-13 2.5E-17 148.8 12.9 98 15-126 265-373 (386)
72 1qqg_A IRS-1, insulin receptor 99.4 3.6E-13 1.2E-17 143.9 8.5 96 13-126 4-113 (264)
73 3tca_A Amyloid beta A4 precurs 99.4 1.6E-12 5.6E-17 138.9 11.0 103 19-124 168-275 (291)
74 2rov_A RHO-associated protein 99.3 5.3E-12 1.8E-16 119.0 7.9 99 21-125 3-115 (117)
75 3lju_X ARF-GAP with dual PH do 99.3 4.8E-12 1.6E-16 142.1 8.8 95 19-124 146-245 (386)
76 2fjl_A 1-phosphatidylinositol- 99.2 3.1E-11 1.1E-15 117.8 12.0 104 20-125 2-148 (150)
77 3a8n_A TIAM-1, T-lymphoma inva 99.2 3.2E-11 1.1E-15 129.5 9.4 107 14-125 6-124 (279)
78 4ejn_A RAC-alpha serine/threon 99.2 6E-11 2.1E-15 134.1 10.3 103 17-125 4-108 (446)
79 2ys3_A UNC-112-related protein 99.1 1.5E-10 5E-15 111.3 9.9 101 20-125 10-112 (137)
80 2d9w_A Docking protein 2; PH d 99.1 7.5E-10 2.6E-14 104.5 12.3 101 15-124 8-120 (127)
81 3hk0_A Growth factor receptor- 99.0 1.1E-09 3.8E-14 116.3 12.0 105 18-125 131-240 (256)
82 4gmv_A RAS-associated and plec 98.9 1.6E-09 5.4E-14 116.5 9.6 104 19-125 158-266 (281)
83 1w1g_A HPDK1, 3-phosphoinositi 98.8 9.1E-09 3.1E-13 100.4 9.7 94 14-126 47-140 (151)
84 4bbk_A Kindlin-1, fermitin fam 98.8 1.1E-08 3.9E-13 99.6 10.1 100 21-125 28-129 (165)
85 4f7h_A Fermitin family homolog 98.8 2.2E-08 7.4E-13 98.6 11.3 100 21-125 49-150 (173)
86 2coa_A Protein kinase C, D2 ty 98.5 2.6E-07 9.1E-12 87.2 10.0 98 14-125 3-119 (125)
87 2d9z_A Protein kinase C, NU ty 98.5 1E-06 3.6E-11 83.4 12.1 98 14-125 3-123 (129)
88 1v5m_A SH2 and PH domain-conta 97.6 0.00081 2.8E-08 64.0 13.8 106 14-126 13-131 (136)
89 3ml4_A Protein DOK-7; tyrosine 97.4 0.00048 1.6E-08 71.1 9.5 99 17-125 7-113 (224)
90 3tfm_A Myosin X; split PH doma 97.3 0.00018 6.2E-09 74.8 6.0 40 17-58 19-58 (228)
91 2lg1_A A-kinase anchor protein 97.2 0.0012 4.1E-08 66.7 10.3 104 17-128 69-175 (185)
92 1v61_A RAC/CDC42 guanine nucle 97.1 0.0036 1.2E-07 60.0 11.5 104 17-128 26-129 (132)
93 3p6a_A RHO guanine nucleotide 97.0 0.0033 1.1E-07 69.3 11.9 104 16-127 256-373 (377)
94 3odw_A RHO guanine nucleotide 96.8 0.0045 1.5E-07 72.2 11.1 107 16-130 409-529 (536)
95 1zc3_B Exocyst complex protein 96.7 0.012 4.2E-07 54.6 11.4 104 15-125 4-107 (113)
96 3t06_A PDZ-rhogef, RHO guanine 96.6 0.0098 3.4E-07 66.6 11.7 104 16-127 292-410 (418)
97 3mpx_A FYVE, rhogef and PH dom 96.3 0.012 4.2E-07 66.1 10.8 100 14-126 239-338 (434)
98 1xcg_A PDZ-rhogef, RHO guanine 96.2 0.029 9.8E-07 61.7 12.8 103 16-126 250-367 (368)
99 3qwm_A Iqsec1, IQ motif and SE 95.9 0.073 2.5E-06 51.4 12.4 104 18-125 12-122 (140)
100 1txd_A RHO guanine nucleotide 95.9 0.022 7.5E-07 63.1 10.0 104 16-127 254-371 (385)
101 1nty_A Triple functional domai 95.8 0.057 1.9E-06 58.1 12.4 103 17-126 201-309 (311)
102 1dbh_A Protein (human SOS 1); 95.7 0.07 2.4E-06 58.3 12.8 102 15-125 243-349 (354)
103 1mai_A Phospholipase C delta-1 95.7 0.056 1.9E-06 51.2 10.5 39 87-126 84-122 (131)
104 2rgn_B RHOA/RAC/CDC42 exchange 95.6 0.058 2E-06 59.2 11.8 106 16-126 204-319 (354)
105 1kz7_A Guanine nucleotide exch 95.5 0.11 3.9E-06 56.9 13.5 104 17-126 208-326 (353)
106 3zvr_A Dynamin-1; hydrolase, D 95.5 0.068 2.3E-06 64.8 12.5 99 19-123 540-643 (772)
107 2dfk_A Collybistin II; DH doma 95.2 0.14 4.9E-06 57.1 13.5 109 15-126 253-364 (402)
108 2pz1_A RHO guanine nucleotide 95.1 0.14 4.7E-06 58.3 13.0 108 16-126 331-441 (466)
109 2vrw_B P95VAV, VAV1, proto-onc 94.2 0.25 8.6E-06 55.0 12.0 105 17-127 232-337 (406)
110 2dfs_A Myosin-5A; myosin-V, in 94.0 0.2 6.7E-06 63.1 11.8 103 584-699 923-1049(1080)
111 3jzy_A Intersectin 2; C2 domai 94.0 0.0098 3.4E-07 68.0 0.0 98 17-126 251-363 (510)
112 3ol1_A Vimentin; structural ge 93.5 0.49 1.7E-05 44.3 10.8 37 587-623 18-54 (119)
113 3o0z_A RHO-associated protein 93.4 2.2 7.4E-05 42.3 15.5 86 618-703 59-159 (168)
114 2z0q_A XPLN, RHO guanine nucle 93.4 0.33 1.1E-05 52.8 10.9 99 16-124 229-345 (346)
115 3ky9_A Proto-oncogene VAV; cal 93.2 0.27 9.3E-06 57.7 10.5 105 17-127 404-509 (587)
116 2fxo_A Myosin heavy chain, car 92.1 1.9 6.6E-05 40.7 12.9 33 613-645 68-100 (129)
117 3ksy_A SOS-1, SON of sevenless 91.7 0.4 1.4E-05 60.2 9.9 100 16-126 441-547 (1049)
118 1foe_A T-lymphoma invasion and 91.7 1.5 5E-05 48.2 13.4 107 17-125 236-366 (377)
119 3v5w_A G-protein coupled recep 91.3 0.71 2.4E-05 55.3 10.9 97 14-125 554-652 (689)
120 2ke4_A CDC42-interacting prote 90.3 0.9 3.1E-05 41.2 8.1 75 620-694 14-90 (98)
121 3swk_A Vimentin; cytoskeleton, 89.9 2.7 9.3E-05 37.1 10.7 79 592-698 3-81 (86)
122 3oja_B Anopheles plasmodium-re 88.1 3.4 0.00011 47.9 13.2 34 669-702 533-566 (597)
123 2eqb_B RAB guanine nucleotide 83.1 9.1 0.00031 34.6 10.3 53 619-702 17-69 (97)
124 3mq9_A Bone marrow stromal ant 82.8 6.5 0.00022 44.3 11.8 70 618-700 394-470 (471)
125 2fxo_A Myosin heavy chain, car 80.1 32 0.0011 32.2 13.7 37 612-648 32-68 (129)
126 2v71_A Nuclear distribution pr 78.0 4.1 0.00014 41.1 7.0 19 665-683 136-154 (189)
127 3na7_A HP0958; flagellar bioge 77.1 45 0.0015 34.7 15.1 35 665-699 89-123 (256)
128 3he4_A Synzip6; heterodimeric 76.3 1.6 5.5E-05 33.8 2.7 20 593-612 7-26 (56)
129 3oja_B Anopheles plasmodium-re 71.9 22 0.00076 41.0 12.3 25 673-697 530-554 (597)
130 1z87_A Alpha-1-syntrophin; pro 71.6 5.9 0.0002 41.9 6.7 56 66-125 206-262 (263)
131 3na7_A HP0958; flagellar bioge 69.9 50 0.0017 34.3 13.3 69 581-649 59-139 (256)
132 1m1j_C Fibrinogen gamma chain; 69.1 38 0.0013 38.0 12.8 87 608-696 25-114 (409)
133 3ol1_A Vimentin; structural ge 68.6 47 0.0016 30.8 11.4 28 622-649 63-90 (119)
134 1gmj_A ATPase inhibitor; coile 67.7 37 0.0013 29.8 9.6 56 612-694 22-79 (84)
135 2ocy_A RAB guanine nucleotide 67.2 48 0.0016 32.3 11.4 53 619-702 49-101 (154)
136 2adz_A Alpha-1-syntrophin; pro 64.3 9 0.00031 38.3 5.8 38 87-125 140-177 (178)
137 1i84_S Smooth muscle myosin he 64.2 9.9 0.00034 48.3 7.7 34 618-651 917-950 (1184)
138 1kd8_B GABH BLL, GCN4 acid bas 61.7 13 0.00043 27.5 4.6 28 612-639 6-33 (36)
139 3c3f_A Alpha/beta peptide with 61.5 10 0.00035 27.6 4.0 28 611-638 5-32 (34)
140 1kd8_A GABH AIV, GCN4 acid bas 60.5 14 0.00047 27.3 4.6 27 612-638 6-32 (36)
141 2dfs_A Myosin-5A; myosin-V, in 60.4 77 0.0026 39.9 14.5 26 667-692 1024-1049(1080)
142 3c3g_A Alpha/beta peptide with 60.1 11 0.00038 27.3 4.0 28 611-638 4-31 (33)
143 3o0z_A RHO-associated protein 59.8 32 0.0011 34.0 8.7 33 669-701 51-83 (168)
144 3ghg_A Fibrinogen alpha chain; 59.7 13 0.00045 42.6 6.7 43 624-683 113-155 (562)
145 1m1j_B Fibrinogen beta chain; 59.5 1.2E+02 0.0042 34.5 14.7 31 607-637 125-155 (464)
146 3m48_A General control protein 59.5 11 0.00037 27.4 3.8 28 611-638 4-31 (33)
147 2e7s_A RAB guanine nucleotide 58.7 18 0.00063 34.5 6.5 49 624-703 42-90 (135)
148 2oxj_A Hybrid alpha/beta pepti 58.3 16 0.00055 26.6 4.6 28 611-638 5-32 (34)
149 2w6b_A RHO guanine nucleotide 58.1 20 0.00069 28.9 5.6 35 618-652 14-48 (56)
150 3he5_A Synzip1; heterodimeric 57.6 32 0.0011 26.1 6.3 16 675-690 33-48 (49)
151 3v6i_B V-type ATP synthase, su 56.1 45 0.0015 30.3 8.2 58 580-637 15-73 (105)
152 1uo4_A General control protein 55.9 15 0.00051 26.8 4.0 28 611-638 5-32 (34)
153 2p22_A Suppressor protein STP2 55.7 1.6E+02 0.0056 29.1 14.1 110 580-689 10-138 (174)
154 1fho_A UNC-89; pleckstrin homo 55.5 23 0.0008 32.9 6.7 100 17-124 8-111 (119)
155 1c1g_A Tropomyosin; contractIl 55.3 1.6E+02 0.0055 28.9 15.5 10 626-635 95-104 (284)
156 3tnu_A Keratin, type I cytoske 55.2 67 0.0023 30.1 9.9 62 626-700 43-104 (131)
157 2hy6_A General control protein 54.6 20 0.00069 26.1 4.6 26 612-637 6-31 (34)
158 1ses_A Seryl-tRNA synthetase; 54.5 53 0.0018 36.8 10.7 85 608-701 14-99 (421)
159 3ra3_B P2F; coiled coil domain 54.0 9.4 0.00032 25.9 2.6 21 667-687 8-28 (28)
160 1wt6_A Myotonin-protein kinase 53.6 39 0.0013 29.5 7.1 50 590-639 11-70 (81)
161 4dzn_A Coiled-coil peptide CC- 53.3 25 0.00086 24.6 4.7 25 674-698 3-27 (33)
162 1cxz_B Protein (PKN); protein- 52.2 78 0.0027 27.9 9.0 56 625-698 22-81 (86)
163 2wq1_A General control protein 51.8 24 0.00083 25.5 4.6 26 612-637 5-30 (33)
164 1x79_B RAB GTPase binding effe 51.6 1.4E+02 0.0049 27.5 11.1 69 620-701 5-73 (112)
165 1kd8_A GABH AIV, GCN4 acid bas 50.4 23 0.00078 26.1 4.3 27 665-691 7-33 (36)
166 3thf_A Protein shroom; coiled- 50.3 1.3E+02 0.0043 30.3 11.3 113 583-698 20-187 (190)
167 3a7p_A Autophagy protein 16; c 50.2 1.6E+02 0.0054 28.6 11.6 68 617-701 71-138 (152)
168 3mq9_A Bone marrow stromal ant 49.3 1.5E+02 0.0052 33.0 13.5 69 605-693 399-470 (471)
169 1g6u_A Domain swapped dimer; d 49.1 23 0.00077 26.8 4.3 25 673-697 20-44 (48)
170 1i84_S Smooth muscle myosin he 49.0 55 0.0019 41.6 10.8 24 619-642 883-906 (1184)
171 3k29_A Putative uncharacterize 48.6 2.1E+02 0.007 28.2 12.2 76 613-701 19-106 (169)
172 1c1g_A Tropomyosin; contractIl 47.9 2.1E+02 0.0072 28.0 14.9 8 625-632 199-206 (284)
173 2bni_A General control protein 47.3 22 0.00074 26.0 3.8 27 612-638 6-32 (34)
174 1cxz_B Protein (PKN); protein- 46.8 41 0.0014 29.7 6.3 26 578-603 14-39 (86)
175 2dq3_A Seryl-tRNA synthetase; 46.6 80 0.0027 35.4 10.6 83 608-692 14-101 (425)
176 1kd8_B GABH BLL, GCN4 acid bas 45.7 35 0.0012 25.2 4.7 27 665-691 7-33 (36)
177 3tnu_B Keratin, type II cytosk 45.6 1.1E+02 0.0039 28.4 9.8 61 626-699 41-101 (129)
178 3qr0_A Phospholipase C-beta (P 45.6 43 0.0015 40.9 8.6 37 89-125 104-142 (816)
179 3ghg_C Fibrinogen gamma chain; 45.2 1.4E+02 0.0048 33.5 12.0 90 608-697 25-115 (411)
180 1f5n_A Interferon-induced guan 43.4 1.1E+02 0.0036 36.0 11.3 51 599-649 467-522 (592)
181 2dq0_A Seryl-tRNA synthetase; 43.4 96 0.0033 35.2 10.6 35 667-701 70-104 (455)
182 3lay_A Zinc resistance-associa 43.3 1.3E+02 0.0046 29.7 10.3 32 665-699 112-143 (175)
183 2pnv_A Small conductance calci 42.8 41 0.0014 26.0 5.0 31 608-638 10-40 (43)
184 3ghg_A Fibrinogen alpha chain; 42.7 93 0.0032 35.8 10.0 67 663-729 121-187 (562)
185 2wq1_A General control protein 42.7 32 0.0011 25.0 4.0 24 665-688 6-29 (33)
186 1fmh_A General control protein 42.2 41 0.0014 23.6 4.4 13 623-635 17-29 (33)
187 2l5g_B Putative uncharacterize 41.9 45 0.0015 25.5 5.0 30 670-699 6-35 (42)
188 3bas_A Myosin heavy chain, str 41.8 61 0.0021 28.5 6.9 26 612-637 61-86 (89)
189 3s4r_A Vimentin; alpha-helix, 41.7 1.3E+02 0.0046 26.6 9.1 26 670-695 67-92 (93)
190 3qne_A Seryl-tRNA synthetase, 40.7 53 0.0018 37.7 7.9 34 668-701 73-106 (485)
191 3ibp_A Chromosome partition pr 40.3 1.2E+02 0.0042 32.4 10.0 65 609-673 12-76 (302)
192 3m48_A General control protein 39.9 31 0.0011 25.0 3.6 23 665-687 6-28 (33)
193 4etp_A Kinesin-like protein KA 39.7 26 0.0009 39.1 5.1 42 612-653 15-56 (403)
194 1quu_A Human skeletal muscle a 39.3 3.1E+02 0.011 27.5 14.4 121 578-698 48-197 (250)
195 2v71_A Nuclear distribution pr 38.7 1.9E+02 0.0066 29.0 10.7 22 675-696 90-111 (189)
196 3lbx_B Beta-I spectrin, spectr 37.7 1.7E+02 0.0058 28.2 10.2 113 581-694 40-171 (185)
197 3edu_A Beta-I spectrin, spectr 37.7 2E+02 0.0068 28.3 10.9 119 580-698 36-172 (218)
198 1fmh_A General control protein 37.1 66 0.0022 22.6 4.8 26 669-694 4-29 (33)
199 1uii_A Geminin; human, DNA rep 36.4 86 0.0029 27.5 6.6 28 669-696 49-76 (83)
200 1uo4_A General control protein 36.4 38 0.0013 24.7 3.6 24 664-687 6-29 (34)
201 3u1c_A Tropomyosin alpha-1 cha 35.7 2.4E+02 0.0082 25.2 11.2 33 613-645 29-62 (101)
202 3c3f_A Alpha/beta peptide with 35.4 41 0.0014 24.5 3.6 24 665-688 7-30 (34)
203 1l8d_A DNA double-strand break 34.1 2.4E+02 0.0081 25.1 9.8 24 615-638 18-41 (112)
204 2w83_C C-JUN-amino-terminal ki 34.0 50 0.0017 28.5 4.7 49 586-638 27-75 (77)
205 3ulb_A Target of rapamycin com 33.9 2E+02 0.0069 26.9 9.2 83 38-125 28-114 (121)
206 1fxk_A Prefoldin; archaeal pro 33.0 1.7E+02 0.0058 25.7 8.5 84 618-701 12-100 (107)
207 3lss_A Seryl-tRNA synthetase; 32.8 1E+02 0.0035 35.3 8.6 35 667-701 100-139 (484)
208 3hnw_A Uncharacterized protein 32.8 2.5E+02 0.0085 26.6 10.0 20 670-689 114-133 (138)
209 3oja_A Leucine-rich immune mol 30.6 1.9E+02 0.0064 32.4 10.4 95 609-703 355-451 (487)
210 3ra3_A P1C; coiled coil domain 30.6 23 0.00079 24.0 1.6 20 674-693 8-27 (28)
211 3swy_A Cyclic nucleotide-gated 30.6 1.1E+02 0.0037 23.9 5.7 37 579-615 2-38 (46)
212 2v4h_A NF-kappa-B essential mo 30.0 1.5E+02 0.005 27.3 7.4 47 592-638 48-107 (110)
213 2zqm_A Prefoldin beta subunit 29.9 1.8E+02 0.0062 25.9 8.3 31 618-648 17-47 (117)
214 1jnm_A Proto-oncogene C-JUN; B 29.7 1E+02 0.0034 25.1 5.8 51 610-691 11-61 (62)
215 3he5_B Synzip2; heterodimeric 29.7 1.6E+02 0.0056 22.5 6.3 16 671-686 36-51 (52)
216 2lw1_A ABC transporter ATP-bin 29.6 1.9E+02 0.0064 25.1 8.0 28 665-692 55-82 (89)
217 1urf_A Protein kinase C-like 1 29.4 1.2E+02 0.0043 26.3 6.4 65 627-702 7-72 (81)
218 3pk1_B Apoptosis regulator BAX 29.0 25 0.00085 25.6 1.7 15 596-610 17-31 (34)
219 1wle_A Seryl-tRNA synthetase; 28.3 2.7E+02 0.0094 31.9 11.2 36 666-701 116-151 (501)
220 2zkm_X 1-phosphatidylinositol- 28.2 73 0.0025 38.8 6.8 37 89-125 97-135 (799)
221 1joc_A EEA1, early endosomal a 27.9 74 0.0025 29.7 5.3 34 668-701 6-39 (125)
222 3u59_A Tropomyosin beta chain; 27.6 3.2E+02 0.011 24.2 11.2 36 603-638 18-54 (101)
223 2lf0_A Uncharacterized protein 27.1 2E+02 0.0068 26.8 7.7 52 625-688 7-58 (123)
224 2xus_A Breast cancer metastasi 27.1 57 0.002 25.8 3.6 21 681-701 14-34 (49)
225 3c3g_A Alpha/beta peptide with 26.9 70 0.0024 23.2 3.6 24 665-688 6-29 (33)
226 4f61_I Stathmin-like domain R4 26.8 1.3E+02 0.0045 31.2 7.3 50 599-648 127-187 (240)
227 3he4_A Synzip6; heterodimeric 26.8 60 0.0021 25.2 3.6 13 675-687 40-52 (56)
228 3ra3_A P1C; coiled coil domain 26.4 75 0.0026 21.6 3.5 25 674-698 1-25 (28)
229 3u06_A Protein claret segregat 26.4 70 0.0024 35.8 5.7 45 612-656 15-59 (412)
230 2r2v_A GCN4 leucine zipper; co 26.3 97 0.0033 22.6 4.3 26 612-637 6-31 (34)
231 3m0d_C TNF receptor-associated 26.2 1.8E+02 0.0061 24.0 6.8 56 581-636 5-63 (65)
232 2z5i_A TM, general control pro 26.2 92 0.0031 24.8 4.8 31 672-702 4-34 (52)
233 3ni0_A Bone marrow stromal ant 26.2 93 0.0032 27.9 5.2 32 608-639 51-85 (99)
234 2wvr_A Geminin; DNA replicatio 25.9 1.2E+02 0.0042 30.7 6.6 27 669-695 118-144 (209)
235 2yy0_A C-MYC-binding protein; 25.6 91 0.0031 24.9 4.7 35 664-698 17-51 (53)
236 4dzn_A Coiled-coil peptide CC- 25.3 1.4E+02 0.0046 21.0 4.7 27 668-694 4-30 (33)
237 3kbt_A Beta-I spectrin, spectr 25.2 4.3E+02 0.015 27.3 11.5 116 580-695 145-278 (326)
238 2jee_A YIIU; FTSZ, septum, coi 25.2 1.4E+02 0.0049 26.0 6.1 38 664-701 11-48 (81)
239 2lw1_A ABC transporter ATP-bin 24.8 66 0.0022 28.1 4.1 34 662-698 14-47 (89)
240 2oqq_A Transcription factor HY 24.6 1E+02 0.0035 23.6 4.4 27 610-636 6-32 (42)
241 3a98_B Engulfment and cell mot 24.6 2.9E+02 0.01 27.8 9.4 35 89-125 116-150 (203)
242 3u06_A Protein claret segregat 24.4 2E+02 0.0068 32.1 8.9 57 623-707 5-61 (412)
243 1ci6_A Transcription factor AT 24.1 1.5E+02 0.0053 24.2 6.0 22 617-638 12-33 (63)
244 2pnv_A Small conductance calci 23.9 69 0.0023 24.7 3.4 22 676-697 19-40 (43)
245 1ik9_A DNA repair protein XRCC 23.8 1.8E+02 0.006 29.7 7.6 55 586-640 150-212 (213)
246 1t2k_D Cyclic-AMP-dependent tr 23.5 1.2E+02 0.0042 24.5 5.2 31 666-696 29-59 (61)
247 3mq7_A Bone marrow stromal ant 23.2 3.1E+02 0.011 25.4 8.3 31 608-638 58-88 (121)
248 3mq7_A Bone marrow stromal ant 23.2 4.5E+02 0.016 24.3 11.2 35 608-642 30-67 (121)
249 3fse_A Two-domain protein cont 22.7 4.4E+02 0.015 28.8 11.2 31 662-695 316-346 (365)
250 3hie_A Protein PSL1, exocyst c 21.9 5.8E+02 0.02 25.1 11.0 81 37-126 64-149 (171)
251 1wlq_A Geminin; coiled-coil; 2 21.5 1.9E+02 0.0064 25.3 6.1 29 669-697 41-69 (83)
252 2jee_A YIIU; FTSZ, septum, coi 21.5 3.3E+02 0.011 23.7 7.6 63 582-648 13-76 (81)
253 2oxj_A Hybrid alpha/beta pepti 21.3 1E+02 0.0035 22.5 3.6 22 666-687 8-29 (34)
254 2bni_A General control protein 21.2 1E+02 0.0035 22.5 3.6 24 665-688 7-30 (34)
255 1s1c_X RHO-associated, coiled- 21.1 3.3E+02 0.011 23.1 7.4 13 632-644 43-55 (71)
256 4emc_A Monopolin complex subun 21.0 2.5E+02 0.0085 28.2 7.7 16 623-638 22-37 (190)
257 2hy6_A General control protein 20.8 1.2E+02 0.0043 22.1 4.0 25 665-689 7-31 (34)
258 4dyl_A Tyrosine-protein kinase 20.4 3.6E+02 0.012 29.6 10.1 63 626-699 328-392 (406)
259 3a58_A Exocyst complex compone 20.2 4.6E+02 0.016 28.2 10.0 83 34-125 131-218 (320)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=345.97 Aligned_cols=205 Identities=25% Similarity=0.396 Sum_probs=177.7
Q ss_pred cccccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCcc-CCC--
Q 002819 152 FHQWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSA-- 227 (876)
Q Consensus 152 ~~~~k~k~~~k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~-~~~-- 227 (876)
.+.++.+...+..+||+||..++.+ +..||.+|.+|+.||+++|+.+|||||++|+...|+.++..++.|... +..
T Consensus 6 ~~~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~ 85 (214)
T 3byi_A 6 LKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQ 85 (214)
T ss_dssp HHHHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGG
T ss_pred hhhHHhcCCCcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCccc
Confidence 3344556667789999999999875 567999999999999999999999999999999999999999998633 322
Q ss_pred CCCccchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccC
Q 002819 228 DEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (876)
Q Consensus 228 ~~D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~N 307 (876)
..|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++. ++.+||++|+.+|+||+.||++|+.|++.|
T Consensus 86 ~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~s~~N 164 (214)
T 3byi_A 86 WEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKS-LVQKLPPPNRDTMKVLFGHLTKIVAKASKN 164 (214)
T ss_dssp GCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHcccCC
Confidence 2599999999999999999999999999999999999899999999998 557999999999999999999999999999
Q ss_pred CCCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Q 002819 308 RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (876)
Q Consensus 308 KMta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (876)
||++.|||+||||+|+|+..... +. +......+.+|++||+||+.||+++
T Consensus 165 kM~~~NLa~vf~P~Ll~~~~~~~-------------~~-----~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 165 LMSTQSLGIVFGPTLLRAENETG-------------NM-----AIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp CCCHHHHHHHHHHHHHCCTTSSS-------------CH-----HHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CCCHHHhHHHhccccCCCCCccH-------------HH-----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999873210 00 1123456789999999999999874
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=342.00 Aligned_cols=196 Identities=25% Similarity=0.408 Sum_probs=173.0
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhh
Q 002819 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (876)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (876)
.+.++.+||++|..++++ ++||.+|.+|+.||+++|+.+|||||++|+...++.+++.++.|........|+|+||++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHH
Confidence 455678999999999875 5799999999999999999999999999999999999999999976556678999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||.++|+.|+.+....+.++++..++. ++.+||+.|+.+|+||+.||++|++|++.||||+.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQR-LLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhh
Confidence 99999999999999999999999999999999999998 56899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
||+|+|++..... .+ .......+..+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~--------------~~--~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSP--------------EL--ENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCH--------------HH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCCCCCh--------------HH--HHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999998742111 11 11223456678999999999998
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=2.3e-40 Score=342.31 Aligned_cols=197 Identities=23% Similarity=0.384 Sum_probs=174.7
Q ss_pred CCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCC--CCCCccchhhhh
Q 002819 161 VKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGDCV 238 (876)
Q Consensus 161 ~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~--~~~D~h~VAslL 238 (876)
.++.+||+||..++.....||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|..... .+.|+|+||++|
T Consensus 8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHH
T ss_pred CCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHH
Confidence 346799999999998878899999999999999999999999999999999999999999863221 247999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||.++|+.|+.+.+..+.++++..++. ++.+||++|+.+|+||+.||++|+++++.|||++.|||+||
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf 166 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE-IVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF 166 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHH-HTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 99999999999999999999999999998999999998 56799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
||+|+|+...+...+.+ +...+.+|++||+||+.||+++.
T Consensus 167 ~P~L~~~~~~~~~~l~~------------------~~~~~~vve~LI~~~~~iF~~~~ 206 (209)
T 2ee4_A 167 WPTLMRPDFENREFLST------------------TKIHQSVVETFIQQCQFFFYNGE 206 (209)
T ss_dssp HHHHSCCCCCSSCCSCC------------------CTTHHHHHHHHHHTHHHHTTCCC
T ss_pred cccccCCCCccHHHHHH------------------hHHHHHHHHHHHHhhHHHcCCCC
Confidence 99999987432211111 12356899999999999999765
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=344.16 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=167.4
Q ss_pred cccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCC----
Q 002819 154 QWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD---- 228 (876)
Q Consensus 154 ~~k~k~~~k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~---- 228 (876)
.|+.+...++.|||++|..++.+ +..||.+|.+|+.||+++|+ +|||||++|+...|+.|++.|+.|.......
T Consensus 10 ~~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~ 88 (229)
T 3iug_A 10 GRENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYV 88 (229)
T ss_dssp --------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTT
T ss_pred ccCCCCCCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccc
Confidence 45666677789999999998875 46799999999999999999 8999999999999999999999986433222
Q ss_pred CCccchhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCC
Q 002819 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (876)
Q Consensus 229 ~D~h~VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NK 308 (876)
.|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++. ++.+||++|+.+|+||+.||++|+++++.||
T Consensus 89 ~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 167 (229)
T 3iug_A 89 QDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHD-VIQQLPPPHYRTLEFLMRHLSLLADYCSITN 167 (229)
T ss_dssp TCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred cchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCccC
Confidence 599999999999999999999999999999999999999999999998 5679999999999999999999999999999
Q ss_pred CCcchhhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 309 Mta~NLAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
|++.|||+||||+|||++...... . ...+........+.+|++||+||+.||+++.
T Consensus 168 M~~~NLAivf~P~Ll~~~~~~~~~------~------~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~ 223 (229)
T 3iug_A 168 MHAKNLAIVWAPNLLRSKQIESAC------F------SGTAAFMEVRIQSVVVEFILNHVDVLFSGRI 223 (229)
T ss_dssp CCHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC---
T ss_pred CChHHHHHHHhccccCCCcccccc------c------chHHHHHHHHHHHHHHHHHHHhHHHhCCCcH
Confidence 999999999999999987321100 0 0011223344567899999999999999876
No 5
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=331.41 Aligned_cols=192 Identities=18% Similarity=0.330 Sum_probs=170.3
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcC-C-ccCC--CCCCccchhhh
Q 002819 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (876)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G-~-~~~~--~~~D~h~VAsl 237 (876)
..|||+||..++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|+.| . ..+. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHH
Confidence 46999999999976 467999999999999999999999999999999999999999985 3 3333 23699999999
Q ss_pred hHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHh
Q 002819 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (876)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (876)
||.|||+||+||||.++|+.|+.+.+..+.++++..++. ++.+||++|+.+|+||+.||++|+.|++.||||+.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHE-ALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999998 5579999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 318 FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
|||+|+|++..+ . .+.+......+.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HccccCCCCCcc--------------H---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999987311 1 1223445667899999999999998
No 6
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=1.9e-39 Score=332.67 Aligned_cols=193 Identities=24% Similarity=0.343 Sum_probs=169.4
Q ss_pred CCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCC-CCCCccch
Q 002819 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS-ADEDAHVI 234 (876)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~---~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~-~~~D~h~V 234 (876)
.+.+..+||+||..++.+.. .||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|+.|..... ...|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 35567899999999998743 799999999999999999999999999999999999999999974333 34689999
Q ss_pred hhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchh
Q 002819 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (876)
Q Consensus 235 AslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NL 314 (876)
|++||.|||+||+||||.++|+.|+.+... +.++++..++. ++.+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQ-VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999999999999998765 45788999998 5689999999999999999999999999999999999
Q ss_pred hHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 315 Ai~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HhhhcccccCCCCc---------------c----ccHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999998621 0 112334567789999999999998
No 7
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=344.38 Aligned_cols=196 Identities=24% Similarity=0.439 Sum_probs=174.5
Q ss_pred CCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCC--CCCCccchhhh
Q 002819 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGDC 237 (876)
Q Consensus 160 ~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~--~~~D~h~VAsl 237 (876)
..++.|||+||..++...+.||.+|.+|+.||+++|+.+|||||++|+...|+.|++.|+.|..... .++|||+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred ccCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHH
Confidence 3456899999999998878999999999999999999999999999999999999999999864332 34699999999
Q ss_pred hHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHh
Q 002819 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (876)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (876)
||.|||+||+||||+++|+.|+.+....+.++++..++. ++.+||++|+.+|+||+.||++|+.+++.|+||+.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKE-VLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHH
Confidence 999999999999999999999999999999999999998 5579999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002819 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (876)
Q Consensus 318 FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (876)
|||+|||+...+ + .++.....++.||++||+||+.||.+
T Consensus 207 f~P~Llrp~~~~---~---------------~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 207 FWPTLMRPDFST---M---------------DALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHCCCSSS---S---------------CHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred hcccccCCCCcc---H---------------HHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 999999976321 1 11233456779999999999999985
No 8
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=2.3e-39 Score=339.99 Aligned_cols=194 Identities=23% Similarity=0.329 Sum_probs=154.9
Q ss_pred cccccchHHHhhhcC----CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHH-HhhcCC---ccCC--CCCCccc
Q 002819 164 LVVGRPILLALEDID----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHV 233 (876)
Q Consensus 164 ~VFGvpL~~ll~~~~----~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~-~ld~G~---~~~~--~~~D~h~ 233 (876)
+|||+||...+++.. .+|.+|.+|+.||+++|+.+|||||++|+..+|+++++ .+|.|. ..+. ..+|+|+
T Consensus 17 pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~ 96 (231)
T 1f7c_A 17 PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKT 96 (231)
T ss_dssp --------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHH
T ss_pred CccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHH
Confidence 489999988887633 36899999999999999999999999999999999987 578763 2222 2479999
Q ss_pred hhhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcch
Q 002819 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (876)
Q Consensus 234 VAslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~N 313 (876)
||++||.|||+||+||||+++|+.|+.+....+.++++..++. ++.+||++|+.+|+||+.||++|++|++.|||++.|
T Consensus 97 va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 175 (231)
T 1f7c_A 97 ITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHS-LVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVAN 175 (231)
T ss_dssp HHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999998 568999999999999999999999999999999999
Q ss_pred hhHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 314 LAi~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
||+||||+|+|++..+... +......+.+|++||+||+.||++..
T Consensus 176 LAivf~P~Ll~~~~~~~~~------------------~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 176 LGVVFGPTLLRPQEETVAA------------------IMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHHHSCC---CCSG------------------GGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHhccccCCCCcccHHH------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999987422111 11234567899999999999999875
No 9
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=1.9e-38 Score=335.34 Aligned_cols=197 Identities=24% Similarity=0.341 Sum_probs=169.5
Q ss_pred CCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCC-CCCccch
Q 002819 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA-DEDAHVI 234 (876)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~---~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~-~~D~h~V 234 (876)
.+.+..+||++|..++.+.. .||.+|.+|+.||+++|+.+|||||++|+...|+.+++.||.|...... ..|+|++
T Consensus 38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v 117 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP 117 (242)
T ss_dssp -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence 45567899999999997643 7999999999999999999999999999999999999999999743333 3599999
Q ss_pred hhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchh
Q 002819 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (876)
Q Consensus 235 AslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NL 314 (876)
|++||.|||+||+||||.++|+.|+.+... +.++++..++. ++.+||++|+.+|+||+.||++|++|++.||||+.||
T Consensus 118 a~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 195 (242)
T 1ow3_A 118 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQ-VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195 (242)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHh
Confidence 999999999999999999999999998765 45788999998 5689999999999999999999999999999999999
Q ss_pred hHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 315 Ai~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||++..
T Consensus 196 Aivf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 196 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHhhcchhCCCCCc---------------c----ccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999998621 0 1123345567899999999999998764
No 10
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=4.5e-38 Score=326.92 Aligned_cols=191 Identities=20% Similarity=0.262 Sum_probs=158.6
Q ss_pred CcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhh
Q 002819 163 SLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (876)
Q Consensus 163 ~~VFGvpL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslL 238 (876)
..+||+||..++.+. ..||.+|.+|+.||+++|+.+|||||++|+... +.+++.|+.|. ......+|+|+||++|
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lL 83 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAF 83 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHH
Confidence 458999999999863 579999999999999999999999999999999 99999999985 3333568999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHhccccCCCCcchhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~-~~~~eeri~~lk~lLl~--~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (876)
|.|||+||+||||+++|+.|+.+.+ ..+.++++..++. ++. +||+.|+.+|+||+.||++|++|++.|||++.|||
T Consensus 84 K~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~-ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKK-LIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHH-HHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999986 6777899999998 567 89999999999999999999999999999999999
Q ss_pred HhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 316 i~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
+||||+|||++..+ .. . ....+.||++||+||+.||+..+
T Consensus 163 ivf~P~Ll~~~~~~--------------~~------~-~~~~~~vve~LI~~~~~iF~~~P 202 (216)
T 1pbw_A 163 EIFSPMLFRFSAAS--------------SD------N-TENLIKVIEILISTEWNERQPAP 202 (216)
T ss_dssp HHHHHHHHTCSSCC--------------HH------H-HHHHHHHHHHHHHTTC-------
T ss_pred HHHhhhcCCCCCCc--------------hh------h-hHHHHHHHHHHHhhhHHhcCCCC
Confidence 99999999987321 00 1 15678999999999999999874
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=324.86 Aligned_cols=209 Identities=21% Similarity=0.326 Sum_probs=168.1
Q ss_pred CCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC-ccCCCCCCccchhhhh
Q 002819 161 VKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (876)
Q Consensus 161 ~k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~-~~~~~~~D~h~VAslL 238 (876)
..+.|||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+...|+.|++.++.+. .......|+|+||++|
T Consensus 16 ~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 95 (228)
T 3kuq_A 16 FQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADML 95 (228)
T ss_dssp CTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHH
T ss_pred CCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHH
Confidence 3467999999999875 5679999999999999999999999999999999999999998753 4445678999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||.++|+.|+.+.+..+.++++..++. ++.+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 96 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 174 (228)
T 3kuq_A 96 KQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKA-AIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174 (228)
T ss_dssp HHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHH
Confidence 99999999999999999999999998888899999998 55699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCC--CCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002819 319 APLLLRPLLAGECELEDDFDM--NGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~--~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (876)
||+|||+...+... .++..+ +..........+.....+..+|.+||+||+.|
T Consensus 175 ~P~Ll~~~~~~~~s-~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 175 APSLFHLNTLKREN-SSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHTCCCC--------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhcCCCCCCCCC-CCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999987543211 111100 00001111223344455678999999999875
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=312.91 Aligned_cols=191 Identities=17% Similarity=0.237 Sum_probs=166.1
Q ss_pred cchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCc-cCCCC-CCccchhhhhHhhhcc
Q 002819 168 RPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSAD-EDAHVIGDCVKHVLRE 244 (876)
Q Consensus 168 vpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~-~~~~~-~D~h~VAslLK~fLRe 244 (876)
..|.+++.. ...||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|++|.. ..... .|+|+||++||.|||+
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flre 83 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRN 83 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHh
Confidence 456666654 46799999999999999999999999999999999999999999963 33334 4999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccC
Q 002819 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (876)
Q Consensus 245 LPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llr 324 (876)
||+||||.++|+.|+.+.+..+.++++..++. ++.+||++|+.+|+||+.||++|+++ +.|||++.|||+||||+|+|
T Consensus 84 LpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~ 161 (201)
T 2ovj_A 84 LKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQ-AVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVA 161 (201)
T ss_dssp SSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999998 55799999999999999999999996 68999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Q 002819 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (876)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (876)
++..+. . ..+.+......+.||++||+||+.||+.-
T Consensus 162 ~~~~~~------------~---~~~~~~~~~~~~~vv~~LI~~~~~if~~f 197 (201)
T 2ovj_A 162 HAVPNP------------D---PVTMLQDIKRQPKVVERLLSLPLEYWSQF 197 (201)
T ss_dssp CSSSSC------------C---HHHHHHHHHHHHHHHHHHHHSCHHHHHGG
T ss_pred CCCCCC------------C---HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 763211 0 12234456677899999999999999864
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=323.84 Aligned_cols=200 Identities=22% Similarity=0.300 Sum_probs=157.8
Q ss_pred CCCCCcccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccch
Q 002819 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVI 234 (876)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~----~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~V 234 (876)
.+.++.+||+||..++.. .+.||.+|.+|+.||++ |+.+|||||++|+...|+.+++.||.|... ....|+|+|
T Consensus 58 ~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~v 135 (271)
T 3eap_A 58 TEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSAPPCDI 135 (271)
T ss_dssp ---CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC-cccccHHHH
Confidence 445678999999998753 34699999999999975 799999999999999999999999999754 346899999
Q ss_pred hhhhHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchh
Q 002819 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (876)
Q Consensus 235 AslLK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NL 314 (876)
|++||.|||+||+||||+++|+.|+.+.+.. .++++..++. ++..||++|+.+|+||+.||++|+++++.|+||+.||
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~-~~~~~~~~~~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 213 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLL-LSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSC-HHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHh-HHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 9999999999999999999999999998875 4668888886 6679999999999999999999999999999999999
Q ss_pred hHhhcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 315 Ai~FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
|+||||+|||++.... .+. .. ........+.+|++||+||+.||....
T Consensus 214 Aivf~P~Ll~~~~~~~-~~~----------~~---~~~~~~~~~~vve~LI~~~~~IF~vp~ 261 (271)
T 3eap_A 214 AVIFAPNLLQTSEGHE-KMS----------SN---TEKKLRLQAAVVQTLIDYASDIGRVPD 261 (271)
T ss_dssp HHHHHHHHHTCCCCCT-TCC----------HH---HHHHHHHHHHHHHHHHHTGGGTTCCCH
T ss_pred HHHHHhHhccCCCCcc-chh----------hh---HHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 9999999999873211 111 11 112234567899999999999997654
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=7.4e-35 Score=334.36 Aligned_cols=192 Identities=18% Similarity=0.318 Sum_probs=169.8
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCC--ccCC--CCCCccchhhh
Q 002819 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (876)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~--~~~~--~~~D~h~VAsl 237 (876)
..+||++|..++.. ...||.+|.+|+.||+.+|+.+|||||++|+...|+.|++.||.+. ..+. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 57999999999876 5679999999999999999999999999999999999999999853 2332 23699999999
Q ss_pred hHhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHh
Q 002819 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (876)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (876)
||.|||+||+||||.++|+.|+.+....+.++++..++. ++..||++|+.+|+||+.||++|+.+++.|+|++.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHE-ALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 999999999999999999999999999999999999998 4579999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002819 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (876)
Q Consensus 318 FaP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (876)
|||+||+++..+.. +.+......+.||++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~~-----------------~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDAM-----------------AALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCTT-----------------GGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred hhccccCCCCccHH-----------------HHHHHHHHHHHHHHHHHhchhhcC
Confidence 99999998743211 011223456789999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=6.2e-36 Score=310.71 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=141.7
Q ss_pred CCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhh
Q 002819 162 KSLVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (876)
Q Consensus 162 k~~VFGvpL~~ll~~---~~~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (876)
...+||+||..++++ .+.||.+|.+|+.||+++|+.+|||||++|+. +++ .+........|+|+||++|
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~lL 90 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALADGI 90 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHHHH
Confidence 356999999999883 35799999999999999999999999999998 333 2222333468999999999
Q ss_pred HhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhh
Q 002819 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (876)
Q Consensus 239 K~fLReLPePLLp~~ly~~~l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (876)
|.|||+||+||||+++|+.|+.+.+..+..+++. . ++.+||++|+.+|+||+.||++|+++++.|||++.|||+||
T Consensus 91 K~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 166 (214)
T 2xs6_A 91 KSFLLALPAPLVTPEASAEARRALREAAGPVGPA---L-EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATF 166 (214)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---G-STTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---H-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHH
Confidence 9999999999999999999999998766554444 3 66899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q 002819 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (876)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (876)
||+|||++..... . .......+.+......+.+|++||+| .||+.+.
T Consensus 167 ~P~Ll~~~~~~~~---~------~~~~~~~~~~~d~~~~~~vve~LI~n--~ife~d~ 213 (214)
T 2xs6_A 167 GPLLLRAPPPPSS---P------PPGGAPDGSEPSPDFPALLVEKLLQE--HLEEQEV 213 (214)
T ss_dssp HHHHHC---------------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred hhhhcCCcccccc---c------ccccchhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence 9999998842100 0 00000011223345678999999976 4777653
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=4.3e-31 Score=294.69 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=129.8
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHhhcCCccCCCCCCccchhhhhHhhhccCCCCCCChhhHHHH
Q 002819 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (876)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~tEGIFRisGs~~~I~~L~~~ld~G~~~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~ 258 (876)
.||.+|.+|+.||+++|+.+|||||++|+..+++.|++.||.|..... ..|+|+||++||.|||+||+||||+++|+.|
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~-~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI-PGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC-CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999975433 3499999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccccCCCCcchhhHhhcccccCCCC
Q 002819 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (876)
Q Consensus 259 l~~~~~~~~eeri~~lk~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~Llrp~~ 327 (876)
+.+.... ..++. ++.+||++|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||++.
T Consensus 277 ~~~~~~~------~~~~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~ 338 (366)
T 3qis_A 277 LDSAYDP------RICRQ-VISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338 (366)
T ss_dssp HHHTTCH------HHHHH-HHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred HHHhhhH------HHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence 9997642 34666 55799999999999999999999999999999999999999999999984
No 17
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.69 E-value=1e-16 Score=152.64 Aligned_cols=103 Identities=27% Similarity=0.432 Sum_probs=75.1
Q ss_pred CCceEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEec----CCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceE
Q 002819 16 SNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFK----NDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYK----d~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~ 90 (876)
+..+.++|||| |+|. .+|+||||||||+++.|+||+ ++.+..|.+ .|.|.++.|..+........++++
T Consensus 5 p~n~~~~G~L~--KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G----~I~L~g~tV~~~~~~~~~~~~k~~ 78 (126)
T 1wi1_A 5 SSGMKHSGYLW--AIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQE----LLQLDGYTVDYTDPQPGLEGGRAF 78 (126)
T ss_dssp CCCEEEEEEEE--EECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSE----EEECSSCEEEECCCCSSCCSCSSE
T ss_pred CCCCceeEEEE--EeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCce----EEECCCcEEEEecCCcccccCceE
Confidence 44689999888 6665 579999999999999999999 777665322 234454444322111112357788
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
|.+... +++|+|+|++++||..||.||..|+..+
T Consensus 79 F~~v~~---~~ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 79 FNAVKE---GDTVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred EEEecC---CceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 876543 4789999999999999999999998643
No 18
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.69 E-value=1.2e-16 Score=153.44 Aligned_cols=103 Identities=25% Similarity=0.382 Sum_probs=75.0
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-ccCCceEEE
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTV 92 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-~~~Kk~~fv 92 (876)
..+..|+|+|||+ |+| ..+.|++|||||+++.|+|||++.+.. +++.|.|..+.-+.. ...+++||.
T Consensus 3 ~~~~~v~k~GwL~--K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~ 70 (130)
T 1v88_A 3 SGSSGIVMADWLK--IRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQ---------WVGTVLLNACEIIERPSKKDGFCFK 70 (130)
T ss_dssp CSSSSCCEEEEEE--ECC-SSSSCEEEEEEEETTEEEEESCSSSCC---------CCEEEECSSCEECCCCTTTSSCEEE
T ss_pred CCCCceEEEeEEE--EeC-CCCCceEEEEEEECCEEEEECCCCCCC---------ceEEEEcCCCEEEECCCCCCCeEEE
Confidence 3456789999877 567 789999999999999999999998764 334444444322111 124458998
Q ss_pred EecCCCC---------------------CceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002819 93 LFPDGRD---------------------GRAFTLKAETSEDLYEWKTALELALAQAP 128 (876)
Q Consensus 93 It~~~~~---------------------gRty~LqAdSeeE~~eWI~AIr~al~~ap 128 (876)
|...... .++|+|+|+|++|+++||.||+.++...|
T Consensus 71 i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~ 127 (130)
T 1v88_A 71 LFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP 127 (130)
T ss_dssp EECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred EEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 8632211 24599999999999999999999987443
No 19
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.68 E-value=2.6e-16 Score=154.64 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=74.1
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee---ccCCceEEEE
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVL 93 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~---~~~Kk~~fvI 93 (876)
..++|+|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+.. ...+.++|.|
T Consensus 16 ~pv~keG~L~--Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~---------~~g~I~L~~~~~~~~~~~~~~~~~~F~I 84 (149)
T 1x1f_A 16 LPLYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSII---------YVDKLDIVDLTCLTEQNSTEKNCAKFTL 84 (149)
T ss_dssp SCEEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSS---------CSEECCCSSCCEEEECCCTTSCCCEEEE
T ss_pred CCccEEEEEE--EeCCCCCCceeEEEEEcCCEEEEEeCCCccc---------cCcEEECCCceEEeeccCCCCcCcEEEE
Confidence 3399999777 7777889999999999999999999998875 334455555433211 1234578877
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
... .++|+|+|+|.+|+++||.||+.++.
T Consensus 85 ~t~---~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 85 VLP---KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp ECS---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EcC---CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 643 48999999999999999999999876
No 20
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.65 E-value=6.4e-16 Score=145.95 Aligned_cols=99 Identities=30% Similarity=0.465 Sum_probs=75.7
Q ss_pred ceEEEEeeEeeecCCCCC-CcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecC
Q 002819 18 TVFKSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k-~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
.|+|+|||++...|. .+ .|++|||||++.+|+|||+..+..+. -.++|.++.|..+..- ...+++||.+++.
T Consensus 11 ~VirkGWL~k~~~g~-~k~~wk~rWFVLt~~~L~yyKd~~eke~~----G~IpL~~~~vr~v~~~--~~~rk~~F~l~~~ 83 (125)
T 1dyn_A 11 LVIRKGWLTINNIGI-MKGGSKEYWFVLTAENLSWYKDDEEKEKK----YMLSVDNLKLRDVEKG--FMSSKHIFALFNT 83 (125)
T ss_dssp CEEEEEEEEESCCCG-GGTSSEEEEEEEESSEEEEESSTTCSCEE----EEEECTTEEEEECCSC--SSSSCEEEEEEET
T ss_pred ceEEEEEEEEecCcc-ccCCceeeEEEEeccceeeecCCcccccc----eEEECCCceEeccCCC--CCCCceEEEEECC
Confidence 499999888543344 55 59999999999999999999887633 3467777777654431 1268899988753
Q ss_pred C-C----CCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 97 G-R----DGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 97 ~-~----~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
+ + +.++|.|.|+|.+|+++|+++|.+|
T Consensus 84 d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 84 EQRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp TSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred CCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 2 2 4579999999999999999999665
No 21
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.9e-16 Score=142.62 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCCCCceEEEEeeEeeecCCCC-CCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceE
Q 002819 12 RPGASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (876)
Q Consensus 12 ~~~~~~~VvKeG~L~l~KkG~~~-k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~ 90 (876)
.+.....++++|||+ |+|... +.|++|||||+++.|+||+++... +.++|.+..+. +....++++|
T Consensus 3 ~~~~~~~~~~~G~L~--K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~----------~~~~i~l~~~~-v~~~~~~~~~ 69 (114)
T 2da0_A 3 SGSSGYGSEKKGYLL--KKSDGIRKVWQRRKCSVKNGILTISHATSNR----------QPAKLNLLTCQ-VKPNAEDKKS 69 (114)
T ss_dssp CSCCCCCSCEEEEEE--EECSSSCCCEEEEEEEEETTEEEECCSSCCS----------CCEEEETTTSE-EEECSSSSSC
T ss_pred CCCCCCCccEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEEcCCCCC----------CCCEEEeeeeE-EEECCCCCCE
Confidence 345556789999887 555444 899999999999999999997654 22333333322 2233456788
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
|.|... +++|+|+|+|++|+.+||.+|+.++..+
T Consensus 70 F~I~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 103 (114)
T 2da0_A 70 FDLISH---NRTYHFQAEDEQDYVAWISVLTNSKEEA 103 (114)
T ss_dssp EEEEET---TEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcC---CcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 988643 5999999999999999999999998754
No 22
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.64 E-value=1.1e-15 Score=141.08 Aligned_cols=98 Identities=18% Similarity=0.311 Sum_probs=76.1
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee---eccCCceEEEE
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~---~~~~Kk~~fvI 93 (876)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+. ....++++|.|
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~~~~~~~~~~~~~~F~i 71 (113)
T 1pls_A 3 PKRIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---------PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71 (113)
T ss_dssp CCCSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCSS---------CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred CCCcEEEEEE--EeCCCCCCceEEEEEEECCEEEEEeCCCCCC---------cceEEEcCCCEEEEecCCCCCCccEEEE
Confidence 4578999777 7777789999999999999999999987654 33445555544321 22456678988
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
... ++++|+|+|+|++|+.+||.+|+.++...
T Consensus 72 ~~~--~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 72 TTT--KQQDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EET--TTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EcC--CCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 642 36999999999999999999999998743
No 23
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.64 E-value=9.2e-16 Score=140.77 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=74.5
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee--ccCCceEEE
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~--~~~Kk~~fv 92 (876)
.+..++++|||+ |+|...+.|++|||||+++.|+||+++.+..+ .+.|+|..+..+.. ...++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~---------~~~i~L~~~~~~~~~~~~~~~~~F~ 72 (109)
T 1wgq_A 4 GSSGSTMSGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---------LESQPLLGFTVTLVKDENSESKVFQ 72 (109)
T ss_dssp CCCSCSCEEEEE--EESSTTSCCEEEEEEEETTEEEEESCTTCSSC---------SEEEECSSEEEEECCCSSCSSSEEE
T ss_pred CCCCCeEEEEEE--eCCCCCCCceeEEEEEeCCEEEEECCCCcCcc---------CceEECCCCEEEECCCCCCCCcEEE
Confidence 345678999887 66777899999999999999999999877642 23344443322211 123558888
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
|.. .++++|+|+|+|++++..||.+|+.++...
T Consensus 73 i~~--~~~~~~~~~a~s~~e~~~Wi~al~~a~~~~ 105 (109)
T 1wgq_A 73 LLH--KGMVFYVFKADDAHSTQRWIDAFQEGTVSG 105 (109)
T ss_dssp EEE--TTEEEEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred EEe--CCCeEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 863 235899999999999999999999998643
No 24
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=140.18 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=71.0
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~ 98 (876)
|.|+|||+ |+|...++|++|||||+++.|+||+++.+.... +.+.|+|..+. +......+++|.|...
T Consensus 1 V~k~G~L~--K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~-------~~~~i~l~~~~-~~~~~~~~~~F~i~~~-- 68 (94)
T 2rsg_A 1 VERCGVLS--KWTNYIHGWQDRWVVLKNNALSYYKSEDETEYG-------CRGSICLSKAV-ITPHDFDECRFDISVN-- 68 (94)
T ss_dssp CCEEEEEE--EESSSTTCEEEEEEEEETTEEEEESSTTGGGTC-------CSEEEETTTCE-EEECSSCSSEEEEEET--
T ss_pred CCEEEEEE--EeCCCCCCceEEEEEEECCEEEEEEeccccccc-------ceeeEecceee-eecCcccceeEEEEeC--
Confidence 67999777 778889999999999999999999987665322 23344554432 2233456678877654
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 99 DGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 99 ~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
+|+|+|+|+|++|+++||.||+.|
T Consensus 69 -~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 69 -DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp -TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred -CeEEEEECCCHHHHHHHHHHHHhh
Confidence 599999999999999999999986
No 25
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2e-15 Score=143.83 Aligned_cols=107 Identities=24% Similarity=0.419 Sum_probs=73.9
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEE-eCCeeeEecCCCCCCCCCCcceeeee--CcEEeCC-Cccee--eccCC
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTL--GGIDLNN-SGSVV--VREDK 87 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL-~~~~L~YYKd~~~~~p~~~~ev~i~L--g~I~L~~-~~sv~--~~~~K 87 (876)
.....|+++|||+ |+|...+.|++||||| +++.|+||+++.+..+.+ .+.+.+ ..|.+.. +..+. ....+
T Consensus 3 ~~~~~v~~~G~L~--K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g--~i~l~~~~~~i~~~~~~~~v~~~~~~~~ 78 (130)
T 2d9v_A 3 SGSSGLVRGGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEED--RVVIHFNVRDIKVGQECQDVQPPEGRSR 78 (130)
T ss_dssp TSCCCEEEEEEEE--EECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEE--EEECTTTEEEEEEGGGCSSCCCCSSCCT
T ss_pred CCCCceeEEEEEE--eecCccCCceeeEEEEccCCEEEEEeCCCCCCcCc--eEecccceeEEeccccccccCCCCCCCc
Confidence 3567799999777 6677789999999999 899999999987654221 111111 1111110 00111 12346
Q ss_pred ceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 88 k~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
+++|.|.. .++|+|+|+|+|++|+++||.||+.++..
T Consensus 79 ~~~F~I~~--~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 79 DGLLTVNL--REGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp TTEEEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 68888764 24689999999999999999999999863
No 26
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.63 E-value=7.4e-16 Score=142.42 Aligned_cols=102 Identities=25% Similarity=0.446 Sum_probs=75.9
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEe--CCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee--------
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------- 83 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~--~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-------- 83 (876)
.....++++|||+ |+|...+.|++|||||+ ++.|+||++..+..+. +.|+|..+..+..
T Consensus 3 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~---------g~i~L~~~~~v~~~~~~~~~~ 71 (117)
T 1v5u_A 3 SGSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECK---------GVIDLAEVEAVAPGTPTIGAP 71 (117)
T ss_dssp SSCCSSSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCC---------CEEEGGGEEEEECCCCCTTSC
T ss_pred CCcCCccEEEEEE--ecCCCCCCceeeEEEEECCCCEEEEeecCCCCccc---------eEEEccCcEEEeecCcccccc
Confidence 3456689999777 67777899999999999 8899999998776532 3344433322211
Q ss_pred -ccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002819 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (876)
Q Consensus 84 -~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~ 129 (876)
...++++|.|... +++|+|+|+|++++.+||.+|+.++...|.
T Consensus 72 ~~~~~~~~F~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 115 (117)
T 1v5u_A 72 KTVDEKAFFDVKTT---RRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115 (117)
T ss_dssp SSSCTTTCEEEEES---SCEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCCCCeEEEEECC---CceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 1345578888643 599999999999999999999999875543
No 27
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.63 E-value=1.7e-15 Score=139.84 Aligned_cols=108 Identities=23% Similarity=0.414 Sum_probs=77.2
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
....++++|||+ |+|...+.|++|||||+++.|+||+++.+..+.+ .+.|.++.+..... .....++++|.|.
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g----~i~L~~~~v~~~~~-~~~~~~~~~f~i~ 76 (118)
T 1v89_A 4 GSSGPIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQG----CMYLPGCTIKEIAT-NPEEAGKFVFEII 76 (118)
T ss_dssp SSSCEEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCSCSE----EECSTTEEEEEECC-CSSCCCCCEEEEE
T ss_pred CCCCCcEEEEEE--ecCCCCCCccEEEEEEECCEEEEEeCCCCCCceE----EEECCCCEEEEcCc-CcccCCcceEEEE
Confidence 345789999777 6677789999999999999999999987754221 23333333221110 0123457888876
Q ss_pred cCC-----CCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002819 95 PDG-----RDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (876)
Q Consensus 95 ~~~-----~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~ 129 (876)
... ..+++|+|+|+|++|+.+||.+|+.++...|+
T Consensus 77 ~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 116 (118)
T 1v89_A 77 PASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp ESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred CCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCCC
Confidence 521 25699999999999999999999999975543
No 28
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=138.76 Aligned_cols=99 Identities=24% Similarity=0.446 Sum_probs=78.4
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee---ccCCceE
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLL 90 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~---~~~Kk~~ 90 (876)
.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..++.+.. ...++++
T Consensus 3 s~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~~ 71 (115)
T 2dn6_A 3 SGSSGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKD---------KKGDILLDENCCVESLPDKDGKKCL 71 (115)
T ss_dssp CCCCSCSEEEEEE--EECTTSSCEEEEEEEECSSCEEEESSTTCSS---------EEEEECCCTTCEEEEECCCTTCCSE
T ss_pred CCCCCceEEEEEE--ecCCCCCCcEEeEEEEECCEEEEeCCCCCcc---------cCcEEEecCcEEEEECCCCCCCeeE
Confidence 3456789999777 6777789999999999999999999887654 455566666544322 2346678
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
|.|... +++|+|+|+|++|+.+||.+|+.++..
T Consensus 72 F~i~~~---~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 72 FLVKCF---DKTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 988654 599999999999999999999999864
No 29
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.63 E-value=1.8e-15 Score=140.12 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=76.6
Q ss_pred CCCCceEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEE
Q 002819 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
.....++++|||+ |+|. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.... +++|.
T Consensus 3 ~~~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~--~~~F~ 69 (115)
T 2cod_A 3 SGSSGKVKSGWLD--KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---------SKGIIPLSAISTVRVQG--DNKFE 69 (115)
T ss_dssp CCCSCCCEEEEEE--ECCSSSSSCCEEEEEEECSSEEEEEESSCCSS---------CCCEEETTTEEEEEEET--TTEEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCCCceEEEEEECCEEEEEcCCCCcc---------cCCEEECCcceEEEeCC--CCEEE
Confidence 4556789999777 6665 678999999999999999999988754 44556666654443332 57887
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
|.. .+|+|+|+|++.+|+.+||.+|+.++..
T Consensus 70 i~~---~~r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 70 VVT---TQRTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp EEE---SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEe---CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 763 3599999999999999999999999853
No 30
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=142.09 Aligned_cols=97 Identities=24% Similarity=0.328 Sum_probs=76.3
Q ss_pred CCCceEEEEeeEeeecCC--CCCCcEEEEEEEeCC--eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceE
Q 002819 15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~--~~k~WKKRWFVL~~~--~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~ 90 (876)
....++++|||+ |+|. ..+.|++|||||+++ .|+||++..+.. +.+.|+|..+..+.....++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~---------~~g~I~L~~~~~~~~~~~~~~~ 72 (119)
T 2dhk_A 4 GSSGKKLCGYLS--KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN---------PLDSIDLSSAVFDCKADAEEGI 72 (119)
T ss_dssp SCSCCCCEEEEE--ECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCS---------CSEEEEGGGCEEEECTTGGGCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCCCceeEEEEEECCccEEEEECCCCCcc---------cccEEECCCCEEEecCCCCCCE
Confidence 345678999777 5554 688999999999998 999999988754 4455666665544333456678
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|.|... +|+|+|+|+|++|+++||.+|+.++.
T Consensus 73 F~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 73 FEIKTP---SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp EEEECS---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 887643 59999999999999999999999975
No 31
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.62 E-value=2.2e-15 Score=143.70 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=71.8
Q ss_pred CCCceEEEEeeEeeecC-CCCCCcEEEEEEEe---CCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-----cc
Q 002819 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILT---RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG-~~~k~WKKRWFVL~---~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-----~~ 85 (876)
......++|||+ |+| ...+.|+||||||+ +..|+||+++.+. +.. ..++|.|.|..+..|.. ..
T Consensus 11 ~~~~~~~~G~L~--K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~-~~~----~~~~G~I~L~~~~~V~~~~~~~~~ 83 (126)
T 1v5p_A 11 VDRQNRICGFLD--IEDNENSGKFLRRYFILDTQANCLLWYMDNPQNL-AVG----AGAVGSLQLTYISKVSIATPKQKP 83 (126)
T ss_dssp CCCCCCEECCEE--EECTTCSSCEEEEEEEEETTTTEEEEESSCTTTS-CTT----CCCSEEEETTTCCEEEECCTTTSC
T ss_pred ecCCCceEEEEE--EeCCCCCCCccceEEEEecCCCCEEEEECCCCCC-CCC----ceeeEEEECCCccEEecCCcccCC
Confidence 344456899777 665 46899999999999 6678888884321 011 01455666665444332 23
Q ss_pred CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.+++||+|... .|+|+|+|+|++|+++||.+|+.++.-
T Consensus 84 ~~~~~F~i~t~---~r~y~l~A~s~~e~~~Wi~al~~a~~~ 121 (126)
T 1v5p_A 84 KTPFCFVINAL---SQRYFLQANDQKDLKDWVEALNQASKS 121 (126)
T ss_dssp SCSSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred CCCEEEEEECC---CEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 45689977543 499999999999999999999998763
No 32
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.62 E-value=3.6e-15 Score=136.06 Aligned_cols=97 Identities=27% Similarity=0.435 Sum_probs=72.0
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCC--eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec-------c
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------E 85 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~--~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~-------~ 85 (876)
....++++|||+ |+|...+.|++|||||+++ .|+||+++.+.. +.+.|+|..+...... .
T Consensus 3 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 71 (109)
T 2i5f_A 3 FTGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRKS 71 (109)
T ss_dssp CCCCEEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCSS---------CSEEEECTTCEEEEECC-------
T ss_pred ccCceeEEEEEE--EcCCCCCCceEEEEEEeCCCcEEEEECCCCCCC---------ccEEEECCCCEEEEccCCcccccC
Confidence 356799999777 6777789999999999986 999999886654 2333444443211111 1
Q ss_pred CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
.+.++|.|... ++++|+|+|+|++|+.+|+.+|+.++
T Consensus 72 ~~~~~F~i~~~--~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 72 EEENLFEIITA--DEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp -CCSEEEEECT--TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeC--CCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 36688888643 46889999999999999999999886
No 33
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.62 E-value=2.8e-15 Score=140.26 Aligned_cols=101 Identities=25% Similarity=0.416 Sum_probs=75.7
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee-eccCCceEEEEec
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFP 95 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-~~~~Kk~~fvIt~ 95 (876)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+. ....+++||.|..
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~f~i~~ 71 (127)
T 1fgy_A 3 FNPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVLDPRKPNCFELYN 71 (127)
T ss_dssp SSCSEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred CCCceEeEEE--EECCCCCCeEEEEEEEECCEEEEeCCCCCCC---------cceEEECCceEEEEccCCCCCceEEEec
Confidence 4578999777 6677789999999999999999999887654 33345555442211 1235678887764
Q ss_pred CCC-------------------CCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002819 96 DGR-------------------DGRAFTLKAETSEDLYEWKTALELALAQAP 128 (876)
Q Consensus 96 ~~~-------------------~gRty~LqAdSeeE~~eWI~AIr~al~~ap 128 (876)
... ..|+|+|+|+|++|+.+||.+|+.++...|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~ 123 (127)
T 1fgy_A 72 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP 123 (127)
T ss_dssp SSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred CCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence 321 247999999999999999999999997554
No 34
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=2e-15 Score=141.16 Aligned_cols=99 Identities=24% Similarity=0.403 Sum_probs=76.4
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-----ccCCc
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKK 88 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-----~~~Kk 88 (876)
.....++++|||+ |+|...+.|++|||||+++.|+||++..+.. +.+.|.|..+..+.. ...+.
T Consensus 9 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~~~~~~~~~ 77 (125)
T 1eaz_A 9 PQDSAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE---------PLRVIPLKEVHKVQECKQSDIMMRD 77 (125)
T ss_dssp ---CCCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS---------CSEEEEGGGCCEEEECTTHHHHTCS
T ss_pred CCCCCccEEEEEE--EeCCCCCCcceEEEEEeCCEEEEEcCCCCCc---------ceeEEEcccceEEeeccccccCCcC
Confidence 4457789999877 6677789999999999999999999987654 334456655443322 13567
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
++|.|... +++|+|+|+|++|+.+|+.+|+.++..
T Consensus 78 ~~F~i~~~---~r~~~l~a~s~~e~~~W~~al~~~i~~ 112 (125)
T 1eaz_A 78 NLFEIVTT---SRTFYVQADSPEEMHSWIKAVSGAIVA 112 (125)
T ss_dssp SEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeC---CcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 88988753 599999999999999999999999874
No 35
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.61 E-value=2.6e-15 Score=141.09 Aligned_cols=99 Identities=31% Similarity=0.417 Sum_probs=77.7
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec--cCCceEE
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLT 91 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~--~~Kk~~f 91 (876)
.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+... ..++++|
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~F 81 (126)
T 1fao_A 13 TAPSLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---------PIRILDLTECSAVQFDYSQERVNCF 81 (126)
T ss_dssp --CCTTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEEGGGCCEEEEECSSSSSSEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCcccEEEEEECCEEEEeCCCCCCC---------ceeEEEccceEEEEecccCCCCCEE
Confidence 4456789999777 6677789999999999999999999887654 3445666665543332 4566889
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.|... +++|+|+|+|++++.+|+.+|+.++..
T Consensus 82 ~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 82 CLVFP---FRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp EEEET---TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 88653 599999999999999999999999874
No 36
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=1.6e-15 Score=142.42 Aligned_cols=110 Identities=24% Similarity=0.367 Sum_probs=75.8
Q ss_pred CCCCceEEEEeeEeeec----C--CCCCCcEEEEEEEeCCeeeEecCCCCCCCC--CCcceeeeeCcEEeCCCcceeecc
Q 002819 14 GASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTLGGIDLNNSGSVVVRE 85 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~Kk----G--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~--~~~ev~i~Lg~I~L~~~~sv~~~~ 85 (876)
.+...|+|+|||+++.. | ...+.|++|||||+++.|+||+++.+.... ..+...+.+.++.+.... ...
T Consensus 3 ~~~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~ 79 (123)
T 1wjm_A 3 SGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAF---DYR 79 (123)
T ss_dssp SCCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECT---TCS
T ss_pred CCCCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecc---ccc
Confidence 34567899998885421 1 127899999999999999999998765321 012222333332221110 124
Q ss_pred CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap 128 (876)
.++++|.|.. .++++|+|+|+|++||++||.+|+.++...+
T Consensus 80 ~r~~~F~i~~--~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~ 120 (123)
T 1wjm_A 80 KRKHVFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGP 120 (123)
T ss_dssp SCSSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEEE--cCCcEEEEECCCHHHHHHHHHHHHHHHhccC
Confidence 5778998864 3469999999999999999999999987544
No 37
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.60 E-value=5.9e-15 Score=146.70 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=80.5
Q ss_pred CCCCceEEEEeeEeeecCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee--------
Q 002819 14 GASNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-------- 82 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-------- 82 (876)
.-...++++|||+++.++. ..++||+|||||+++.|+||+++.+.... .|.|+|..+..+.
T Consensus 10 ~m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~--------~G~I~L~~~~~v~~~~~~~~~ 81 (164)
T 2lul_A 10 HMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYR--------KGFIDVSKIKCVEIVKNDDGV 81 (164)
T ss_dssp CCCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCC--------CCEEEGGGCCEEEECCCCSSS
T ss_pred cCCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccccc--------ccEEEEeeeEEEEeccccccC
Confidence 4567899999988654332 35689999999999999999987654321 2234443332221
Q ss_pred eccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCchhhhcCccccccC
Q 002819 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRN 142 (876)
Q Consensus 83 ~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~a~~~g~~~if~~ 142 (876)
.....+++|.|... .|+|+|+|+|++|+++||.||++++...++.. ..-|.|.|..
T Consensus 82 ~~~~~~~~f~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~~~-~~yHpg~~~~ 137 (164)
T 2lul_A 82 IPCQNKYPFQVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIM-IKYHPKFWTD 137 (164)
T ss_dssp CCSSSCSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTTCSCCC-SEECCSCCCT
T ss_pred cccccceeEEEecC---CcEEEEECCCHHHHHHHHHHHHHHHHHChhhh-hhcCCCcccC
Confidence 11345577877644 49999999999999999999999998655432 2234555543
No 38
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.60 E-value=3.7e-16 Score=148.11 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=71.2
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCC----CCCCCCcceeeeeCcEEeCCCcceeec---cCC
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS----ALPQRGGEVNLTLGGIDLNNSGSVVVR---EDK 87 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~----~~p~~~~ev~i~Lg~I~L~~~~sv~~~---~~K 87 (876)
....++|+|||+ |+|...++|++|||||+++.|+||++... ..|.+. ...|.|+|..+...... ..+
T Consensus 8 ~~~~~~k~G~L~--K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~----~~~G~I~L~~~~v~~~~~~~~~k 81 (124)
T 2w2x_D 8 KKDEHKQQGELY--MWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGS----LCRGILDLNTYNVVKAPQGKNQK 81 (124)
T ss_dssp -----CCEEEEE--EEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCC----SCSEEEEGGGEEEEECTTCBTTB
T ss_pred hhhhcceeEEEE--EECCCCCCceEeEEEEECCEEEEEcccccccccccccCC----ccccEEECCCCEEEEccCCcCCC
Confidence 345689999887 66777899999999999999999998532 112111 12233444443221111 357
Q ss_pred ceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 88 k~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
+++|.|.......++|+|+|+|.+|+.+||.||+.++..+
T Consensus 82 ~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 82 SFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp SEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred CEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 7899887644345789999999999999999999998643
No 39
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.60 E-value=2.3e-15 Score=143.73 Aligned_cols=115 Identities=24% Similarity=0.415 Sum_probs=73.2
Q ss_pred CCCCCCCceEEEEeeEeee---cCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCC--CcceeeeeCcEEeCCCccee--
Q 002819 11 PRPGASNTVFKSGPLFISS---KGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGIDLNNSGSVV-- 82 (876)
Q Consensus 11 ~~~~~~~~VvKeG~L~l~K---kG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~--~~ev~i~Lg~I~L~~~~sv~-- 82 (876)
+....+..+.|+|||++++ .|. .+++|++|||||+++.|+|||+........ +.....+.+.|+|..+....
T Consensus 4 ~~s~~~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~ 83 (129)
T 2p0d_A 4 RASVGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGR 83 (129)
T ss_dssp -----CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECT
T ss_pred ccCCCCcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECC
Confidence 3344566899999998642 242 248999999999999999999985331100 00001133334444432211
Q ss_pred eccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 83 ~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
....++++|.|.. .++++|+|+|++++||++||.+|+.++.+.
T Consensus 84 ~~~kr~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 84 HLSSRRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp TSCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 1235678898863 357899999999999999999999998743
No 40
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.60 E-value=7.2e-15 Score=138.46 Aligned_cols=103 Identities=23% Similarity=0.382 Sum_probs=75.0
Q ss_pred CCCCCCCCceEEEEeeEeeecCCCCCCcEEEEEEEe--CCeeeEecCC-CCCCCCCCcceeeeeCcEEeCCCcceeeccC
Q 002819 10 RPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKND-PSALPQRGGEVNLTLGGIDLNNSGSVVVRED 86 (876)
Q Consensus 10 ~~~~~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~--~~~L~YYKd~-~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~ 86 (876)
.+.......++++|||+ |+|...+.|++|||||+ ++.|+||+++ .+.. +.+.|+|..+........
T Consensus 9 ~~~~~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~---------~~g~i~L~~~~v~~~~~~ 77 (129)
T 1x1g_A 9 LSTVELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR---------PVGGFSLRGSLVSALEDN 77 (129)
T ss_dssp SCCCTTCSEEEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCSS---------CSCCEESTTCCCEECCSS
T ss_pred ccccccCCCEEEEEEEE--EECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCc---------cceEEECcCCEEEEeCCC
Confidence 33345667899999777 66777899999999999 4799999986 3333 334455554322111111
Q ss_pred ----------CceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 87 ----------KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 87 ----------Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+.++|.|.. .++++|+|+|+|++|+.+||.+|+.++.
T Consensus 78 ~~p~~~~~~~~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 78 GVPTGVKGNVQGNLFKVIT--KDDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp SSCSSCSSCCCSSCEEECC--TTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred CCcccccCCCCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 567888864 3458899999999999999999999975
No 41
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=135.03 Aligned_cols=99 Identities=27% Similarity=0.430 Sum_probs=74.2
Q ss_pred CCCCceEEEEeeEeeecC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee----eccCCc
Q 002819 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV----VREDKK 88 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~----~~~~Kk 88 (876)
.+...++++|||+ |+| ...+.|++|||||+++.|+||+++.+.. +.+.|+|..+.-.. ....++
T Consensus 17 ~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 85 (122)
T 2yry_A 17 NPNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEES---------ILGSIPLLSFRVAAVQPSDNISRK 85 (122)
T ss_dssp CTTCCEEEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------CCEEEESTTCCCEECCTTCSCSSS
T ss_pred CCCCCccEEEEEE--EECCCCCCCcEEEEEEEeCCEEEEECCCCCCC---------cccEEEcCCCEEEEcCccccCCcc
Confidence 4456799999888 444 3578999999999999999999987764 23344444432111 123567
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
++|.|.. .++++|+|+|+|++++.+||.+|+.++.
T Consensus 86 ~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 86 HTFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp SEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 8898853 2469999999999999999999999874
No 42
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.60 E-value=4.7e-15 Score=138.11 Aligned_cols=95 Identities=21% Similarity=0.378 Sum_probs=70.3
Q ss_pred EEEEeeEeeecCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcc----eeeccCCceEEE
Q 002819 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS----VVVREDKKLLTV 92 (876)
Q Consensus 20 vKeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~s----v~~~~~Kk~~fv 92 (876)
.|+|||+++ .|+ ..+.|++|||||+++.|+||+++.+..| .+.|+|..... ......+++||.
T Consensus 1 tkeG~L~kK-~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p---------~~~i~l~~~~~~~~~~~~~~~r~~~F~ 70 (112)
T 3cxb_B 1 TKEGMLHYK-AGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIP---------LLSVNMGGEQCGGCRRANTTDRPHAFQ 70 (112)
T ss_dssp CEEEEEEEC-CSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSC---------SEEEETTC-CEEEEEECCCSSCTTEEE
T ss_pred CceEEEEEe-CCCCCCCCCCceEEEEEEECCEEEEECCCCCCCc---------cceEEecCCEEEeeeccCCCCCCeEEE
Confidence 389988743 232 5789999999999999999999877642 23344443211 112346778998
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
|.. .++++|+|+|+|+++|++||.+|+.++..
T Consensus 71 l~~--~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 71 VIL--SDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp EEE--TTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEc--CCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 863 23689999999999999999999999863
No 43
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.60 E-value=5.9e-15 Score=139.22 Aligned_cols=100 Identities=26% Similarity=0.420 Sum_probs=74.9
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCC--eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-------c
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------R 84 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~--~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-------~ 84 (876)
.....++++|||+ |+|...+.|++|||||+++ .|+||++..+.. +.+.|+|..+..+.. .
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~ 81 (129)
T 1x05_A 13 EFRGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRK 81 (129)
T ss_dssp TTCSEEEEEEEEE--ECCSSCCCCEEEEEEEEETTTEEEEECSSCCSS---------CSEEEECTTCEEEECCCCCCSSS
T ss_pred cccCCceEEEEEE--ecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCc---------ceeEEEccCCEEEEccCCccccc
Confidence 4467899999777 6777789999999999976 899999886654 233344444322111 1
Q ss_pred cCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 85 ~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
..++++|.|... ++++|+|+|+|++++.+||.+|+.++..
T Consensus 82 ~~~~~~F~i~~~--~~~~~~l~a~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 82 SEEENLFEIITA--DEVHYFLQAATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp CSSCSEEEEECT--TCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred cCCCeEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 136788988643 3588999999999999999999999863
No 44
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.59 E-value=2.5e-15 Score=141.16 Aligned_cols=106 Identities=21% Similarity=0.331 Sum_probs=77.5
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeC-CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~-~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
...++++|||+ |+|...+.|++|||||++ +.|+||++..+..+.+ .++|..+.+..+........++++|.|.
T Consensus 5 ~~~~~~~G~L~--K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g----~i~L~~~~~~~~~~~~~~~~~~~~F~I~ 78 (125)
T 1unq_A 5 DVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIR 78 (125)
T ss_dssp GGCEEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHH----TSCSEEEECTTCEEEEECSSSTTEEEEE
T ss_pred CCCeeEEeeEE--eccCCccCccCcEEEEecCCEEEEEeCCCCCCCCc----eeEccceeEEeeeecccccCCCCEEEEE
Confidence 46789999777 677778999999999995 6999999987653221 1344455544332222234677888875
Q ss_pred c-CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 95 P-DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 95 ~-~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
. .....++|+|+|+|.+|+.+||.+|+.++...
T Consensus 79 ~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~ 112 (125)
T 1unq_A 79 CLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 112 (125)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3 22456899999999999999999999998743
No 45
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.59 E-value=3.6e-15 Score=141.27 Aligned_cols=100 Identities=22% Similarity=0.294 Sum_probs=71.4
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccC--------CceE
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--------KKLL 90 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~--------Kk~~ 90 (876)
++++|||+ |+|...++|++|||||+++.|+|||++..... ..+...+.|.+|.+..... ... +.++
T Consensus 6 ~~k~G~L~--Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d-~~P~gsI~L~~c~v~~~~~---~~~~~~~~~~~~~~~ 79 (120)
T 4a6h_A 6 EIKSGFLE--RRSKFLKSYSKGYYVLTPNFLHEFKTADRKKD-LVPVMSLALSECTVTEHSR---KNSTSSPNSTGSDAK 79 (120)
T ss_dssp CSEEEEEE--EEETTTTEEEEEEEEECSSEEEEESSCCTTTC-CSCSEEEEGGGEEEEEECC---CCC---------CCE
T ss_pred ccEEEEEE--EcCCCCCCCccEEEEEeCCEEEEEcCCCcCcC-CCceEEEECCCCEEEEccc---ccccccccccCCCcE
Confidence 89999777 66767899999999999999999998763310 1122344555555543211 111 5677
Q ss_pred EEEecCCC----CCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 91 TVLFPDGR----DGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 91 fvIt~~~~----~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
|.|..... .+++|+|+|+|.+||++||.+|+.++
T Consensus 80 F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 80 FVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 88865432 14799999999999999999999885
No 46
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=136.42 Aligned_cols=99 Identities=23% Similarity=0.433 Sum_probs=73.8
Q ss_pred CCCCceEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee----ccCCc
Q 002819 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKK 88 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~----~~~Kk 88 (876)
.+...++++|||+ |+|. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++
T Consensus 16 ~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 84 (128)
T 2dkp_A 16 NPNAPVVRRGWLY--KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG---------ILGSILLPSFQIALLTSEDHINRK 84 (128)
T ss_dssp CTTSCCCEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------EEEEECGGGSEEEECCGGGCCSSC
T ss_pred CCCCCcEEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEECCCCCcc---------cceEEEcCceEEEEcCCcccCCCC
Confidence 3456789999887 5554 588999999999999999999887664 333444433221111 12567
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
++|.|.. .++++|+|+|+|++|+++||.+|+.++.
T Consensus 85 ~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 85 YAFKAAH--PNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp SEEEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred eEEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 8898864 2369999999999999999999999874
No 47
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=7.3e-15 Score=133.18 Aligned_cols=97 Identities=23% Similarity=0.404 Sum_probs=72.5
Q ss_pred ceEEEEeeEeeecCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee-----eccCCceE
Q 002819 18 TVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-----VREDKKLL 90 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-----~~~~Kk~~ 90 (876)
.++++|||++...+. ..+.|++|||||+++.|+||+++.+..| .+.|.|..+.... ....++++
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~~~~ 72 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP---------KGTFLIKGYSVRMAPHLRRDSKKESC 72 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSC---------SEEEECTTCEEEECGGGCSSGGGGGE
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCC---------CEEEEecceEEEeCCccccccCCcce
Confidence 589999888654432 2389999999999999999999876542 3334444433211 12345688
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|.|.. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 73 F~i~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 73 FELTS--QDRRTYEFTATSPAEARDWVDQISFLLK 105 (108)
T ss_dssp EEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEc--CCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 98864 3469999999999999999999999986
No 48
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.58 E-value=1e-14 Score=136.14 Aligned_cols=103 Identities=24% Similarity=0.412 Sum_probs=74.4
Q ss_pred CCCCceEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEE
Q 002819 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
.+...++++|||+ |+|. ..+.|++|||||+++.|+||+++.+..+.+ .+.|.++.+...... ....++++|.
T Consensus 6 ~p~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g----~i~l~~~~v~~~~~~-~~~~~~~~f~ 78 (123)
T 1upq_A 6 DPNLPVHIRGWLH--KQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLG----SVLLPSYNIRPDGPG-APRGRRFTFT 78 (123)
T ss_dssp CTTSCEEEEEEEE--EECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCE----EEEGGGCEEEECCSS-CTTSSSSEEE
T ss_pred CCCCCceEEEEEE--eeCCCCCCCceeEEEEEeCCEEEEECCCCCcccce----EEECCCCEEEECCCC-ccCCCcEEEE
Confidence 3455689999888 4443 578999999999999999999987764221 223333333322110 1234678888
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|.. .++++|+|+|+|++|+..||.+|+.++.
T Consensus 79 i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 79 AEH--PGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp EEC--TTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EEC--CCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 753 3459999999999999999999999986
No 49
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.58 E-value=3.8e-15 Score=148.95 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=70.8
Q ss_pred ceEEEEeeEeeecCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec---c----CC
Q 002819 18 TVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E----DK 87 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~---~----~K 87 (876)
.|+|+|||+++.++. .+++||+|||||+++.|+||+++.+.. .-.-+.|.|+|..+..+... . .+
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~-----~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~ 76 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG-----RRGSKKGSIDVEKITCVETVVPEKNPPPER 76 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT-----EEEEEEEEEEGGGEEEEEECCCCSSCCGGG
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC-----CCCceeeEEECcceEEEEeccCCCCcchhc
Confidence 479999888543332 368899999999999999999842210 00114455555543322111 1 11
Q ss_pred c---------------------eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002819 88 K---------------------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (876)
Q Consensus 88 k---------------------~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~ 129 (876)
+ ++|.|... .++|+|+|+|++|+++||.+|+.++...|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i~~n~~ 136 (169)
T 1btk_A 77 QIPRRGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRYNSD 136 (169)
T ss_dssp CC---------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccccccCcccccccccccccccccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHHHCcc
Confidence 1 77866543 389999999999999999999999975443
No 50
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.57 E-value=4.1e-15 Score=136.47 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
+...++++|||++. ..+.|++|||||+++.|+||+++.+. ..+...+.+.++.+... ....++++|.|.
T Consensus 4 ~~~~~~~~G~L~K~----~~k~Wk~RwfvL~~~~L~yyk~~~~~---~~~~~~i~l~~~~v~~~----~~~~~~~~F~i~ 72 (107)
T 2cof_A 4 GSSGLETSSYLNVL----VNSQWKSRWCSVRDNHLHFYQDRNRS---KVAQQPLSLVGCEVVPD----PSPDHLYSFRIL 72 (107)
T ss_dssp CCCCCTTCCEEEEE----ETTEEEEEEEEECSSCEEEECSSTTC---SEEEEEECTTTCEEECC----CBTTBSCEEEEE
T ss_pred CCCCCcEeEEEEEe----cCCCcceEEEEEECCEEEEEeCCccc---CCCeeEEeccceEEEEC----CCCCCCeEEEEE
Confidence 44567899988854 57889999999999999999988652 12223334444333221 124567889886
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.. +.++|+|+|+|++|+.+||.+|+.++.
T Consensus 73 ~~--~~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 73 HK--GEELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp ET--TEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred eC--CCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 53 268999999999999999999999875
No 51
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=139.43 Aligned_cols=100 Identities=18% Similarity=0.319 Sum_probs=74.9
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEe--CCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEE
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~--~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
....++++|||+ |+|...+.|++|||||+ ++.|+||+++.+.... +.+.|+|..+. +.....++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~-------~~g~I~L~~~~-v~~~~~~~~~F~ 73 (120)
T 2d9x_A 4 GSSGENVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQK-------PRGTLQLAGAV-ISPSDEDSHTFT 73 (120)
T ss_dssp CCSCCCCEEEEE--EEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSC-------CSEEEECTTCC-EECCSSSSSCEE
T ss_pred CCCCCcEEEEEE--ecCCCCCCceEEEEEEECCCCEEEEEecCcccCCC-------ccceEEcceEE-EEecCCCCCEEE
Confidence 345678999877 56667889999999999 4799999988764111 34446665543 333345668888
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
|.. .++++|+|+|+|++|+++||.+|+.++..
T Consensus 74 i~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 74 VNA--ASGEQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp ECC--SSSCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred EEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 864 23699999999999999999999999864
No 52
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.57 E-value=9.1e-15 Score=144.75 Aligned_cols=104 Identities=16% Similarity=0.267 Sum_probs=66.3
Q ss_pred ceEEEEeeEee--------ecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCce
Q 002819 18 TVFKSGPLFIS--------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (876)
Q Consensus 18 ~VvKeG~L~l~--------KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~ 89 (876)
.|+++|||+++ |+|...+.|++|||||+++.|+||+++.+......+.+.+.+.++.+.. ......+++
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~---~~~~~~~~~ 78 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDI---SYSETKRKN 78 (168)
T ss_dssp -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEE---CSSSCSCSS
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEe---ccccCCCCC
Confidence 57899999965 5666789999999999999999999986532111222222222111110 001235678
Q ss_pred EEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 90 ~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
+|.|... +++|+|+|++++|+.+||.+|+.++...
T Consensus 79 ~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~~~ 113 (168)
T 2j59_M 79 VFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNLN 113 (168)
T ss_dssp EEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCCC
T ss_pred EEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 9988754 3899999999999999999999998643
No 53
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=133.86 Aligned_cols=102 Identities=24% Similarity=0.374 Sum_probs=73.2
Q ss_pred CCCceEEEEeeEeeecC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEE
Q 002819 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI 93 (876)
+...++++|||+ |+| ...+.|++|||||+++.|+||+++.+..+.+ .+.|..+.+..+.. .....++++|.|
T Consensus 7 p~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g----~i~L~~~~v~~~~~-~~~~~~~~~F~i 79 (117)
T 2d9y_A 7 GNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILG----SIPLLSFRVAAVQP-SDNISRKHTFKA 79 (117)
T ss_dssp SSCCCCEEEEEE--EECTTSSSCEEEEEEEEETTEEEEESSTTCCSCCE----EEECSSCEEEECCT-TTTCCCSSEEEE
T ss_pred CCCCeeEEEEEE--EeCCCCCCCceEEEEEECCCEEEEECCCCCCCcCC----EEEeCCeEEEEcCc-cccCCCccEEEE
Confidence 456789999888 444 3578999999999999999999987764221 23333333211100 012356778988
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.. .++++|+|+|+|++|+.+||.+|+.++.
T Consensus 80 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 80 EH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp EC--SSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred Ec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 53 2469999999999999999999999875
No 54
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.57 E-value=1e-14 Score=134.29 Aligned_cols=103 Identities=24% Similarity=0.462 Sum_probs=72.4
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEE-eCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee---ec--cCCceE
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VR--EDKKLL 90 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL-~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~---~~--~~Kk~~ 90 (876)
..++++|||+ |+|...+.|++||||| .++.|+||+++.+..+. +.+.+..+.|+|..+..+. .. ..++++
T Consensus 3 ~~~~~~G~L~--K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~--g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~ 78 (112)
T 3aj4_A 3 MAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIE--DKVHMPMDCINIRTGQECRDTQPPDGKSKDCM 78 (112)
T ss_dssp CSCSEEEEEE--EECSSSCCEEEEEEEECTTSEEEEESSTTCCSEE--EEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred cceeEEEEEE--eeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCC--ccccccccceeecccccccccCCCCCCCcCcE
Confidence 4578999777 6677789999999999 88999999998765422 1222222234443222211 11 223578
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|.|.. .++++|+|+|+|++|+.+||.+|+.+..
T Consensus 79 F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 79 LQIVC--RDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEe--cCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 88863 2369999999999999999999998863
No 55
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=137.48 Aligned_cols=107 Identities=22% Similarity=0.402 Sum_probs=71.6
Q ss_pred CCCceEEEEeeEeeec---CC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCC--------CcceeeeeCcEEeCCCcce
Q 002819 15 ASNTVFKSGPLFISSK---GI--GWKSWKKRWFILTRTSLVFFKNDPSALPQR--------GGEVNLTLGGIDLNNSGSV 81 (876)
Q Consensus 15 ~~~~VvKeG~L~l~Kk---G~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~--------~~ev~i~Lg~I~L~~~~sv 81 (876)
...+|.|+|||+.++- |. ..++|++|||||+++.|+|||+.+...+.+ .+...+.|.++.+....
T Consensus 4 ~~~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~-- 81 (124)
T 3pp2_A 4 RTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAP-- 81 (124)
T ss_dssp -----CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECC--
T ss_pred cCCcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecc--
Confidence 3567999999996521 32 346899999999999999999987654221 12233344333322211
Q ss_pred eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.....++++|.|.. .++++|+|+|+++++|.+|+.+|+.+++
T Consensus 82 ~d~~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 82 KDKSSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp GGGCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred cccCCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 02345788898864 4579999999999999999999999985
No 56
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=141.22 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=73.0
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCC---CCCCCCcceeeeeCcEEeCCCcc--eeec----cC
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---ALPQRGGEVNLTLGGIDLNNSGS--VVVR----ED 86 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~---~~p~~~~ev~i~Lg~I~L~~~~s--v~~~----~~ 86 (876)
...|+++|||++...|...+.|++|||||+++.|+||+++.+ .. +.+.|+|..+.. +... ..
T Consensus 2 ~~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~---------p~g~I~L~~~~~~~v~~~~~~~~~ 72 (134)
T 2y7b_A 2 NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKN---------PIGRINLANCTSRQIEPANREFCA 72 (134)
T ss_dssp CCCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSC---------CSEEEEGGGBCSSSCEECCTTTCC
T ss_pred CCCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccC---------ceEEEEhhhCccccccccchhhcc
Confidence 356899998885544667889999999999999999996543 32 344455555432 2222 24
Q ss_pred CceEEEEecC--CC---------------CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 87 KKLLTVLFPD--GR---------------DGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 87 Kk~~fvIt~~--~~---------------~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
++++|.|... .. ..++|+|+|+|++|+.+||.+|+.++.
T Consensus 73 ~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 73 RRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp CTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6788877531 11 125899999999999999999999986
No 57
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.56 E-value=6.4e-15 Score=142.87 Aligned_cols=101 Identities=26% Similarity=0.399 Sum_probs=75.2
Q ss_pred CCCceEEEEeeEeeecC----CCCCCcEEEEEEEeCC-----eeeEecCCC-CCCCCCCcceeeeeCcEEeCCCcceeec
Q 002819 15 ASNTVFKSGPLFISSKG----IGWKSWKKRWFILTRT-----SLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVR 84 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG----~~~k~WKKRWFVL~~~-----~L~YYKd~~-~~~p~~~~ev~i~Lg~I~L~~~~sv~~~ 84 (876)
....++++|||++...+ ...+.|++|||||+++ .|+||++.. +.. +.+.|+|..+..+...
T Consensus 14 ~~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~---------~~g~I~L~~~~~~~~~ 84 (150)
T 1wg7_A 14 QKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE---------PKGSIFLDSCMGVVQN 84 (150)
T ss_dssp CSCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSC---------CSEEECTTTCCEECCC
T ss_pred CCCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCC---------cCcEEecccCEEEecC
Confidence 45678999988843321 3467999999999997 999999987 443 3344555554433222
Q ss_pred -cCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 85 -EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 85 -~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
..++++|.|... ++++|+|+|++.+|+.+||.+|+.++..
T Consensus 85 ~~~~~~~F~i~~~--~~r~~~l~A~s~~e~~~Wi~al~~ai~~ 125 (150)
T 1wg7_A 85 NKVRRFAFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQL 125 (150)
T ss_dssp CSSCTTEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 357788988643 3589999999999999999999999874
No 58
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.56 E-value=1.7e-14 Score=135.16 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=74.0
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCC---eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEE
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~---~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
+..+++.|||++. +. .+.|+||||||+++ .|+||++..+..|.+ .|+|.++.+..... ....+++++|.
T Consensus 5 ~~~~~~~G~L~k~--~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g----~I~L~g~~V~~~~~-~~~~~~~~~Fk 76 (112)
T 2coc_A 5 SSGSLLCGPLRLS--ES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPR----TIPLPSCKLSVPDP-EERLDSGHVWK 76 (112)
T ss_dssp CSSSSSEEEEEEE--SS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCS----EECGGGCEEECCCS-SSCCSSSEEEE
T ss_pred cCCceEEEEEEec--CC-CCCceEEEEEEECCCccEEEEECCCCccCcce----EEEcCCCEEEecCc-ccccCCCCEEE
Confidence 3456677988863 33 78899999999985 799999998875432 34666665553111 12245788998
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
|... +++|+|+|+|+++|++||.+|+.|..
T Consensus 77 i~~~---~~~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 77 LQWA---KQSWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp EEET---TEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred EecC---CeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 8743 58999999999999999999999875
No 59
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.55 E-value=2.3e-14 Score=138.94 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=73.7
Q ss_pred CCCceEEEEeeEeeecC--CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee-----eccCC
Q 002819 15 ASNTVFKSGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-----VREDK 87 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-----~~~~K 87 (876)
....++|+|||+++..+ ...+.|++|||||+++.|+||++..+.. +.+.|.|..+..+. ....+
T Consensus 13 ~~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 83 (148)
T 1u5f_A 13 DLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKK 83 (148)
T ss_dssp GCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECTTSCSSTTG
T ss_pred hCCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcc---------cceEEEcCCcEEEECCCcccCCCC
Confidence 34689999988854322 1357999999999999999999987754 23334444432211 12345
Q ss_pred ceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 88 k~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.++|.|.. .++|+|+|+|+|.+++.+||.+|+.++.
T Consensus 84 ~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 84 DCCFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp GGEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred ccEEEEEC--CCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 58898864 2369999999999999999999999986
No 60
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=135.30 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=67.6
Q ss_pred ceEEEEeeEeeec-CC-CCCCcEEEEEEEeC-CeeeEecCCCCCC-CCCCc-------ceeeeeCcEEeCCCcce-----
Q 002819 18 TVFKSGPLFISSK-GI-GWKSWKKRWFILTR-TSLVFFKNDPSAL-PQRGG-------EVNLTLGGIDLNNSGSV----- 81 (876)
Q Consensus 18 ~VvKeG~L~l~Kk-G~-~~k~WKKRWFVL~~-~~L~YYKd~~~~~-p~~~~-------ev~i~Lg~I~L~~~~sv----- 81 (876)
.++|+|||+ |+ |. .+++|++|||||++ +.|+||++..+.. ...+. .+.++.+.|.|..+...
T Consensus 3 ~~~k~G~L~--K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~ 80 (128)
T 2rlo_A 3 IPIKQSFLL--KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASG 80 (128)
T ss_dssp CEEEEEEEE--EECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCC
T ss_pred cceeEEEEE--EecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccc
Confidence 468999887 55 42 57999999999996 7888887632200 00011 12222233333332211
Q ss_pred --eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 82 --VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 82 --~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...+.+++||.|.. .++++|+|+|+|++|+++||.||+.++.
T Consensus 81 ~~~~~~~~~~~F~I~t--~~~r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 81 SAGQAEEENFEFLIVS--STGQTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CCSSCCCCCCCEEEEC--TTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 01125678888753 2469999999999999999999999986
No 61
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.53 E-value=2e-14 Score=135.18 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCCCceEEEEeeEeeec----C--CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee--ecc
Q 002819 14 GASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VRE 85 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~Kk----G--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~--~~~ 85 (876)
+.+..|.|+|||+++.. | ...+.|++|||||+++.|+||+++.+..+.+...+ ...+.|+|..+.... ...
T Consensus 3 ~~~~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~-~~~~~i~L~~~~v~~~~d~~ 81 (122)
T 1dro_A 3 GTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF-RGEPSYDLQNAAIEIASDYT 81 (122)
T ss_dssp SCCSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCS-SCCCBCCCSSCCCEECCSSS
T ss_pred CCCCceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCccc-CCCceEECCCCEEEeCCCCC
Confidence 34567899999985432 1 14789999999999999999999886643211110 011234443322111 123
Q ss_pred CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.++++|.|.. .++++|+|+|++++||++||.+|+.++..
T Consensus 82 kr~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 82 KKKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp SSTTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 5778998873 34699999999999999999999999864
No 62
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.53 E-value=2.7e-14 Score=129.49 Aligned_cols=94 Identities=20% Similarity=0.364 Sum_probs=68.2
Q ss_pred EEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCC
Q 002819 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (876)
Q Consensus 21 KeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~g 100 (876)
.+|||+ |+|...+.|++|||||+++.|+||+++.+.... +.|.|+|..+ .+.....+.++|.|.. .++
T Consensus 1 ~eG~L~--K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~-------~~g~i~L~~~-~v~~~~~~~~~F~i~~--~~~ 68 (103)
T 3rcp_A 1 MEGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKG-------SKGSIKMAVC-EIKVHSADNTRMELII--PGE 68 (103)
T ss_dssp CEEEEE--EECCTTTCEEEEEEEEETTEEEEESSCC---CC-------CSCEEEGGGC-EEECCTTCSSEEEEEE--TTT
T ss_pred CceEEE--EccCCCCCeeceEEEEECCEEEEEecCCcccCC-------cccEEEeeee-EEEEcCCCCceEEEEe--CCC
Confidence 479777 778778999999999999999999998764211 2344555432 2222234566777654 236
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 101 RAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 101 Rty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
++|+|+|+|++|+++||.+|+.++..
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998753
No 63
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.51 E-value=4e-14 Score=128.43 Aligned_cols=98 Identities=21% Similarity=0.330 Sum_probs=65.8
Q ss_pred EEEeeEeeec----C--CCCCCcEEEEEEEeCCeeeEecCCCCCCC--CCCcceeeeeCcEEeCCCcceeeccCCceEEE
Q 002819 21 KSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 21 KeG~L~l~Kk----G--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p--~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
++|||+++.. | ...+.|++|||||+++.|+||+++.+... ...+...+.+.++.+... .....++++|.
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~---~~~~~~~~~F~ 77 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVA---LDYKKKKHVFK 77 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEEC---SSCCSSSSEEE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEc---ccccCCccEEE
Confidence 4798885431 1 45789999999999999999998763210 011222233333221110 11245678898
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
|.. .++++|+|+|+|++|+.+||.+|+.|
T Consensus 78 i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 78 LRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 863 34699999999999999999999864
No 64
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.51 E-value=4.7e-14 Score=145.96 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=74.7
Q ss_pred CceEEEEeeEeeecCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee-----ccCCce
Q 002819 17 NTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKL 89 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~-----~~~Kk~ 89 (876)
..++|+|||+++..+. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...+.+
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~---------p~g~I~L~~~~~v~~~~~~~~~~k~~ 174 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKKDC 174 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSTTGGG
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCcc---------ceEEEEeCCcEEEEcCCccccCCCCC
Confidence 4699999888554321 468999999999999999999988764 334455555443321 234568
Q ss_pred EEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 90 ~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+|.|.. .++|+|+|+|+|.+++..||.+|+.++.
T Consensus 175 ~F~I~t--~~~r~~~l~A~s~~e~~~Wi~aL~~ai~ 208 (211)
T 1u5e_A 175 CFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQ 208 (211)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 998864 2369999999999999999999999986
No 65
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.48 E-value=1.1e-13 Score=147.69 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCCceEEEEeeEee------ecCCC----CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee--
Q 002819 15 ASNTVFKSGPLFIS------SKGIG----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-- 82 (876)
Q Consensus 15 ~~~~VvKeG~L~l~------KkG~~----~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-- 82 (876)
....|+|+|||+++ |+|.. +++|++|||||+++.|+|||++....... ...+.+.|+|..+....
T Consensus 7 ~~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~---~~~p~g~I~L~~~~v~~~~ 83 (263)
T 3a8p_A 7 EQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQ---NSAPRCALFAEDSIVQSVP 83 (263)
T ss_dssp ---CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC---------CCCSEEEECTTCEEEECT
T ss_pred cCCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCccccccc---ccCccceEEcCCcEEEECC
Confidence 34679999999832 45555 78999999999999999999864221000 00123335554322111
Q ss_pred eccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002819 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (876)
Q Consensus 83 ~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap 128 (876)
....+++||.|.. .++++|+|+|+|++|+++||.+|+.++...+
T Consensus 84 ~~~kk~~~F~I~t--~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 84 EHPKKEHVFCLSN--SCGDVYLFQATSQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp TCSSCSSEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 1234678998864 2469999999999999999999999987543
No 66
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.48 E-value=7.6e-14 Score=157.35 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=76.6
Q ss_pred CCCCceEEEEeeEeee-cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEE
Q 002819 14 GASNTVFKSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~K-kG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
.....+.|+||||++. .|+.++.|+||||||+++.|+||+...... ...+.|.+|.+.. ....+++|||.
T Consensus 296 ~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~-----~~~~~l~~~~v~~----~~~~~r~~cF~ 366 (407)
T 4h8s_A 296 INRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAG-----GLIQDLDNCSVMA----VDCEDRRYCFQ 366 (407)
T ss_dssp CCCSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSC-----CCCBCSSCCEEEE----ECCTTCSSEEE
T ss_pred ccCCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCC-----CeEEECCceEEEE----CCCCCCCceEE
Confidence 3456789999999764 466688999999999999999998654431 1123344444332 22357889998
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
|.... ..++|+|+|+|++|+.+||.||+.++.++
T Consensus 367 i~~~~-~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 367 ITTPN-GKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp EECTT-SSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred EEecC-CCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 86421 24799999999999999999999998743
No 67
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.48 E-value=1.2e-13 Score=144.32 Aligned_cols=98 Identities=28% Similarity=0.551 Sum_probs=80.4
Q ss_pred CCceEEEEeeEeeecCCC-----CCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceE
Q 002819 16 SNTVFKSGPLFISSKGIG-----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~-----~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~ 90 (876)
...++++|||+ |+|.. .+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+.....++++
T Consensus 55 ~~~~~k~G~L~--K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~---------~~g~I~L~~~~~v~~~~~k~~~ 123 (228)
T 3tfm_A 55 KQEALKQGWLH--NNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEK---------LKGTVEVRSAKEIIDNTNKENG 123 (228)
T ss_dssp CCCSSEEEEEE--ECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCS---------EEEEEEGGGCSEEEEETTTTSE
T ss_pred CCCcceEEEEE--EECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcc---------eeEEEEcCCCEEeccCCCCCcE
Confidence 45689999887 55543 38999999999999999999987753 6677888877665555677889
Q ss_pred EEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 91 fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
|.|... +++|+|+|+|++|+.+||.+|+.++...
T Consensus 124 F~I~t~---~r~~~l~A~s~~e~~~Wv~aL~~~i~~~ 157 (228)
T 3tfm_A 124 IDIIMA---DRTFHLIAESPEDASQWFSVLSQVHSST 157 (228)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred EEEEcC---CcEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 988653 5999999999999999999999999743
No 68
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.42 E-value=3.6e-13 Score=150.73 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=68.4
Q ss_pred CceEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcce-eeccCCceEEEEe
Q 002819 17 NTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTVLF 94 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv-~~~~~Kk~~fvIt 94 (876)
+.++|+|||+++.+++ .++.|++|||||+++.|+||++ .+.. +.+.|+|..+... ....++++||.|.
T Consensus 276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~---------~~~~i~l~~~~v~~~~~~~r~~~F~i~ 345 (385)
T 2q13_A 276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVA---------GGLAMDIDNCSVMAVDCEDRRYCFQIT 345 (385)
T ss_dssp CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCSS---------CEEEEECTTCEEEEECCTTCSSEEEEE
T ss_pred CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCcC---------CCceEEccceEEEeccccCCCceEEEE
Confidence 5789999998543322 2357999999999999999998 3332 1223444443221 1225678999886
Q ss_pred cCCCCC-ceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 95 PDGRDG-RAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 95 ~~~~~g-Rty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.. ++ ++|+|+|+|++|+.+||.||+.++..
T Consensus 346 t~--~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 346 SF--DGKKSSILQAESKKDHEEWICTINNISKQ 376 (385)
T ss_dssp CT--TSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred eC--CCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 43 24 89999999999999999999999863
No 69
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.42 E-value=4.9e-13 Score=148.11 Aligned_cols=102 Identities=25% Similarity=0.406 Sum_probs=76.2
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcce-eeccCCceEEEEecC
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTVLFPD 96 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv-~~~~~Kk~~fvIt~~ 96 (876)
.++++|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.|.|+|..+... .....+++||.|...
T Consensus 212 ~~~k~G~L~--K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~I~~~ 280 (347)
T 2r09_A 212 NPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVEDPRKPNCFELYNP 280 (347)
T ss_dssp CCCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEECS
T ss_pred ccccCCeeE--ecCCCcccceeEEEEEcCCEEEEEcCCCccC---------CcEEEEcCCeEEEEccCCCCCCEEEEEeC
Confidence 368999887 6777789999999999999999999987654 2334555443321 112467788888643
Q ss_pred C-------------------CCCceEEEEeCCHHHHHHHHHHHHHHHhhCCch
Q 002819 97 G-------------------RDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (876)
Q Consensus 97 ~-------------------~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~ 130 (876)
. ..+|+|+|+|+|++|+.+||.+|+.++...|..
T Consensus 281 ~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~~ 333 (347)
T 2r09_A 281 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFY 333 (347)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHHH
T ss_pred CccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCCH
Confidence 1 124899999999999999999999999855443
No 70
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.41 E-value=1.3e-12 Score=124.81 Aligned_cols=103 Identities=15% Similarity=0.274 Sum_probs=72.3
Q ss_pred EEEEeeEee---ecCCC--CCCcEEEEEEEeCCeeeEecCCCCCCC-----CCCcceeeeeCcEEeCCCcceeeccCCce
Q 002819 20 FKSGPLFIS---SKGIG--WKSWKKRWFILTRTSLVFFKNDPSALP-----QRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (876)
Q Consensus 20 vKeG~L~l~---KkG~~--~k~WKKRWFVL~~~~L~YYKd~~~~~p-----~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~ 89 (876)
..+|+|..+ |.|+. +++|++|||||.++.|+||+....... ...+.-.|+|.++.+... ....+++
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~----e~~~~~~ 77 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLP----DDPEHPD 77 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECC----CCTTSTT
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEec----CCCCCCC
Confidence 467887754 55553 789999999999999999996631110 011122345555444321 1235778
Q ss_pred EEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 90 ~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
||.|.. ...|.+|+|+|++++++..|++||+.++...
T Consensus 78 ~F~L~~-~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 78 IFQLNN-PDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp EEEEEC-TTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred EEEEee-CCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 998873 2358999999999999999999999999743
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.41 E-value=7.2e-13 Score=148.81 Aligned_cols=98 Identities=23% Similarity=0.387 Sum_probs=74.8
Q ss_pred CCCceEEEEeeEeeecCCCC-CCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcce------eecc-C
Q 002819 15 ASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV------VVRE-D 86 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~-k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv------~~~~-~ 86 (876)
....++|+|||+ |+|... +.|++|||||+++.|+||+++.+.. +.|.|.|..+..+ .... .
T Consensus 265 l~~~~~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~---------~~G~I~L~~~~~~~~v~~~~~~~~~ 333 (386)
T 3lju_X 265 LSRNYLKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF---------ARGEVFIGSKESGYTVLHGFPPSTQ 333 (386)
T ss_dssp SSCCCSEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSB---------CSEEEECCCGGGTCEEEESCCTTCC
T ss_pred cccccceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCcc---------cceEEEeecceeeeeecccCCcccc
Confidence 356789999776 777766 9999999999999999999988764 3445555443321 1111 1
Q ss_pred ---CceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 87 ---KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 87 ---Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.+++|.|... +|+|+|+|+|++|+++||.||+.++.+
T Consensus 334 ~~~~~~~F~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 334 GHHWPHGITIVTP---DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp SCCSCEEEEEECS---SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ccCCCcEEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1578877643 499999999999999999999999974
No 72
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.39 E-value=3.6e-13 Score=143.94 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=70.4
Q ss_pred CCCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCC-------eeeEecCCCC-----CCCCCCcceeeeeCcEEeCCCcc
Q 002819 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPS-----ALPQRGGEVNLTLGGIDLNNSGS 80 (876)
Q Consensus 13 ~~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~-------~L~YYKd~~~-----~~p~~~~ev~i~Lg~I~L~~~~s 80 (876)
+.....++|+|||+ |+ +.||+|||||+++ .|+||+++.+ .. +.+.|+|..+..
T Consensus 4 ~~~~~~v~k~G~L~--K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~---------p~g~I~L~~~~~ 68 (264)
T 1qqg_A 4 SDGFSDVRKVGYLR--KP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSA---------PKRSIPLESCFN 68 (264)
T ss_dssp -----CEEEEEEEE--CT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSC---------CSEEEEGGGEEE
T ss_pred CCCCCCccEEEEEE--EC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccC---------cceEEEeeceEE
Confidence 45567899999887 44 6899999999998 9999998876 22 344566665544
Q ss_pred eee--ccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 81 VVV--REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 81 v~~--~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
+.. ...++++|.|... +|+|+|+|+|++|+++||.+|+.++..
T Consensus 69 V~~~~~~~~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~ 113 (264)
T 1qqg_A 69 INKRADSKNKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNR 113 (264)
T ss_dssp EEEECCSSCSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC--
T ss_pred EEeccCCCCCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 322 2456678887643 599999999999999999999999864
No 73
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.36 E-value=1.6e-12 Score=138.87 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=72.0
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcc--eeeccCCceEEEEecC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLFPD 96 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~s--v~~~~~Kk~~fvIt~~ 96 (876)
..++|||| |+|...+.|++|||||+++.|+||++..+..+.+.. ..+.+..+.+..... ......+++||.|.+.
T Consensus 168 p~~~G~L~--k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i-~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~ 244 (291)
T 3tca_A 168 PELEGALY--LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLA-CFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHP 244 (291)
T ss_dssp CCCEEEEE--EECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCE-EEEEGGGCEEEEECSHHHHHCCSSSCEEEEECT
T ss_pred CceEEEEE--EeCCCCCCceEEEEEEeCCEEEEEecCccccccCce-eeccceeEEEEecCccccccCCCCCeEEEEEcC
Confidence 36899888 667778999999999999999999998877644321 111222222211111 1112356789988653
Q ss_pred C---CCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 97 G---RDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 97 ~---~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
. ...++|+|+|+|++++..||.||+.|.
T Consensus 245 ~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 245 QIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp TCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 2 235789999999999999999999875
No 74
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.27 E-value=5.3e-12 Score=118.98 Aligned_cols=99 Identities=15% Similarity=0.285 Sum_probs=68.1
Q ss_pred EEEeeEeeecCCCCC-CcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcce--------ee--ccCCce
Q 002819 21 KSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--------VV--REDKKL 89 (876)
Q Consensus 21 KeG~L~l~KkG~~~k-~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv--------~~--~~~Kk~ 89 (876)
.+|||.+.|+|+..+ .|++|||||+++.|+||+++.+.. ... +.+.|+|+....| +. ..+..+
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~-----p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~ 76 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSN-----PYMVLDIDKLFHVRPVTQTDVYRADAKEIPR 76 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTC-----CSEEECGGGEEEEEECCTTTCSSSCTTTGGG
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCC-----ceEEEECcccEEEEEcccccccccccccCCc
Confidence 489888767877777 999999999999999999865430 001 1222333222111 11 123456
Q ss_pred EEEEecCC---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 90 LTVLFPDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 90 ~fvIt~~~---~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+|.|+... ...++|+|.|+|++|+++||.+|+.++.
T Consensus 77 iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 77 IFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 78775432 3358999999999999999999998874
No 75
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.27 E-value=4.8e-12 Score=142.14 Aligned_cols=95 Identities=15% Similarity=0.260 Sum_probs=69.2
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEE--eCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee--eccCCceEEEEe
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLF 94 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL--~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~--~~~~Kk~~fvIt 94 (876)
.+|+|||| |+|+..+.|++||||| +++.|+||+++.+.. +.|.|.|..+..+. ....+.++|.|.
T Consensus 146 ~~keG~L~--KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~---------p~g~I~L~~~~~~~~~~~~~~~~~f~I~ 214 (386)
T 3lju_X 146 GYREGFLW--KRGRDNGQFLSRKFVLTEREGALKYFNRNDAKE---------PKAVMKIEHLNATFQPAKIGHPHGLQVT 214 (386)
T ss_dssp SEEEEEEE--EECSSSCCEEEEEEEEETTTTEEEEEC-----C---------CSEEEEGGGEEEEECHHHHTSTTCEEEE
T ss_pred ccccccee--eeccccCCceEEEEEEEcCCCEEEEECCCCccC---------cccEEEeeccEEEEcccccCCCceEEEE
Confidence 58999888 7888899999999999 899999999987765 34445555433322 123577778764
Q ss_pred -cCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 95 -PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 95 -~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
..+...|+|+|+|+|.+++.+|+.+|+.+.
T Consensus 215 ~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 215 YLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 233456999999999999999999999874
No 76
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.25 E-value=3.1e-11 Score=117.83 Aligned_cols=104 Identities=15% Similarity=0.298 Sum_probs=73.1
Q ss_pred EEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCC---------CC---CC-------------CCc----------
Q 002819 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---------AL---PQ-------------RGG---------- 64 (876)
Q Consensus 20 vKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~---------~~---p~-------------~~~---------- 64 (876)
+|+|||| +++...+.|++|||||+++.|+|++.... .. +. ...
T Consensus 2 ~k~G~L~--~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILY--LEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEE--EEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEE--eecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 6999888 45667889999999999999999982221 10 00 000
Q ss_pred -c----eeeeeCcEEeCCCcceee---ccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 65 -E----VNLTLGGIDLNNSGSVVV---REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 65 -e----v~i~Lg~I~L~~~~sv~~---~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+ =.+..|.|+|..+.-... ...+.++|.|.+...+.++|.|.|+|.++|.+||.+|+.|+.
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~ 148 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ 148 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 0 001134566665443222 235778999987666678999999999999999999999976
No 77
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.18 E-value=3.2e-11 Score=129.48 Aligned_cols=107 Identities=23% Similarity=0.337 Sum_probs=70.8
Q ss_pred CCCCceEEEEeeEee-----ecC-----CCCCCcEEEEEEEeCCeeeEecCCCCCCCC--CCcceeeeeCcEEeCCCcce
Q 002819 14 GASNTVFKSGPLFIS-----SKG-----IGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTLGGIDLNNSGSV 81 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~-----KkG-----~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~--~~~ev~i~Lg~I~L~~~~sv 81 (876)
.....|.|+|||..+ +++ ...+.|+++||||+++.|+||+++...... ..+...|.+.++.+..+.
T Consensus 6 ~~~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~-- 83 (279)
T 3a8n_A 6 AAQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVP-- 83 (279)
T ss_dssp ----CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCT--
T ss_pred ccCCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEecc--
Confidence 344668999999753 221 136899999999999999999998754211 112223444444443221
Q ss_pred eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...+++++|.|.. .++++|+|+|++.+||+.||.+|+.++.
T Consensus 84 -d~~kKk~vF~L~t--~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 84 -EHPKKDFVFCLSN--SLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp -TSSSSCSCCCEEE--TTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCcEEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1245678888864 3679999999999999999999999875
No 78
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.15 E-value=6e-11 Score=134.11 Aligned_cols=103 Identities=21% Similarity=0.347 Sum_probs=70.2
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEe-CCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe-
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF- 94 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~-~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt- 94 (876)
..|+|+|||+ |+|..+++||+|||||+ ++.|+|||+.++..+.+ .+++..+.+..+........++++|.|.
T Consensus 4 ~~v~keG~L~--K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~~f~I~~ 77 (446)
T 4ejn_A 4 VAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIRC 77 (446)
T ss_dssp CCEEEEEEEE--EEETTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEE
T ss_pred ceEEEEeeEE--eeccccccccceEEEEeeCCEEEEEecCCCCCccC----cccccCccccceeecCCCCCCCceeEEEc
Confidence 4699999776 78888999999999998 79999999998775322 1233333333322222334556788774
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+........+|++++.+++.+|+.||+.++.
T Consensus 78 ~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~ 108 (446)
T 4ejn_A 78 LQWTTVIERTFHVETPEEREEWTTAIQTVAD 108 (446)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCCceeeeeEEecCCHHHHHHHHHHHHhhhh
Confidence 3322223448999999999999999999975
No 79
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-10 Score=111.26 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=68.8
Q ss_pred EEEEeeEeee-cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEE-ecCC
Q 002819 20 FKSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDG 97 (876)
Q Consensus 20 vKeG~L~l~K-kG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI-t~~~ 97 (876)
..++||-+.+ ++..++.||+|||||+++.|+|||+..+.. +.+.-.+.|.+|.+....++ ..++|+|.+ .|..
T Consensus 10 el~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~ePig~I~L~gceV~pd~~~---~~~kf~ikl~iPs~ 84 (137)
T 2ys3_A 10 ELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GDPIQQLNLKGCEVVPDVNV---SGQKFCIKLLVPSP 84 (137)
T ss_dssp CEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SCCSCCBCTTTCEEEECCBG---GGTBEEEEEEEECS
T ss_pred chhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--CCCceEEECCCCEEeccccc---cCCceEEEEEccCC
Confidence 4567665443 344588999999999999999999888752 11111234444444332111 356776644 4432
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 98 ~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...++|+|.|+|++++.+||+|++.|..
T Consensus 85 ~g~r~y~l~cdsEeqy~~WMaA~rlAsk 112 (137)
T 2ys3_A 85 EGMSEIYLRCQDEQQYARWMAGCRLASK 112 (137)
T ss_dssp SSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHhcc
Confidence 3348999999999999999999998864
No 80
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=7.5e-10 Score=104.55 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=69.6
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCC------eeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeecc---
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--- 85 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~------~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~--- 85 (876)
-...++|+||||+...+...+.|+||||||.+. .|-||.+......... +-+.|.|..|-+|....
T Consensus 8 m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~-----~rrVIrLsdCisV~~~~~e~ 82 (127)
T 2d9w_A 8 MGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEA-----ARKVIRLSDCLRVAEAGGEA 82 (127)
T ss_dssp SCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSC-----CEEEECGGGEEEEEECCSCS
T ss_pred ccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCC-----CceEEEhhhCCeEecccCcc
Confidence 345689999999988755556799999999874 7899998765432222 22335555444433221
Q ss_pred ---CCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 86 ---DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 86 ---~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
...+.|.|... .++|+|.|++. ++.+||.+|..+.
T Consensus 83 ~~pk~~~aF~l~T~---er~~~laAe~~-E~~~Wi~~ic~~a 120 (127)
T 2d9w_A 83 SSPRDTSAFFLETK---ERLYLLAAPAA-ERGDWVQAICLLA 120 (127)
T ss_dssp SSCSSCEEEEEEES---SCEEEEEECHH-HHHHHHHHHHHHH
T ss_pred CCCCcceEEEEEeC---CcEEEEEeCcH-HHHHHHHHHHHHh
Confidence 23345555433 49999999964 8999999999875
No 81
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=116.30 Aligned_cols=105 Identities=23% Similarity=0.198 Sum_probs=72.0
Q ss_pred ceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcc--eeeccCCceEEEEec
Q 002819 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLFP 95 (876)
Q Consensus 18 ~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~s--v~~~~~Kk~~fvIt~ 95 (876)
...++||||+ ++.+.++|+||||+|+++.|+||+..+... .+.....+.+.++++-.... -..+..+++||.|.+
T Consensus 131 ~P~~~G~L~~--ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~-~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~ 207 (256)
T 3hk0_A 131 SPEIQGFLHV--KELGKKSWKKLYVCLRRSGLYCSTKGTSAA-PRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKP 207 (256)
T ss_dssp CEEEEEEEEE--ECTTSSCEEEEEEEEETTEEEEESSTTCCC-GGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEE
T ss_pred CCcceeEEEE--ecCCCCcceEEEEEEeCCEEEEEecCCCCc-cccceEEEEcCCCEEEEecccccccCCCCCCEEEEEc
Confidence 3478999984 444568999999999999999999765432 12112223555555433221 011234578999876
Q ss_pred CCC---CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 96 DGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 96 ~~~---~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
... ....|+|+|++++++..|+.||+.+..
T Consensus 208 ~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 208 NKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp TTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 432 234799999999999999999999864
No 82
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.94 E-value=1.6e-09 Score=116.51 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=67.2
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcce--eeccCCceEEEEecC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--VVREDKKLLTVLFPD 96 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv--~~~~~Kk~~fvIt~~ 96 (876)
..++|||| +++.+.+.|+||||||+++.|+||+..+...+ +.....+.+.++++-..... ..+..+.+||.|.+.
T Consensus 158 pe~~G~L~--~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~-r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~ 234 (281)
T 4gmv_A 158 PEIEGVLW--LKDDGKKSWKKRYFLLRASGIYYVPKGKAKVS-RDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHP 234 (281)
T ss_dssp CCCEEEEE--EECTTSSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECT
T ss_pred CccEEEEE--EECCCCCCCeEEEEEEeCCEEEEEeCCCCCcc-ccceEEEEcCCcEEEEecccccccCCCCCcEEEEecC
Confidence 46899988 44445689999999999999999997654322 21122234555444332210 112456789999753
Q ss_pred C---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 97 G---RDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 97 ~---~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
. ....+|+|+|++++++..||.||+.+..
T Consensus 235 ~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 235 QIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp TCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 2 2346899999999999999999998864
No 83
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.83 E-value=9.1e-09 Score=100.44 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=71.8
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEE
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI 93 (876)
.....|+|.|+|++. +|. .|++|||+|+.+.+.||-++.... ..|.|.++....+....++ .|++.
T Consensus 47 ~~ge~Ilk~G~v~Kr-kGl---~~kkR~liLT~~PrL~Yvdp~~~~---------~KGeIpls~~l~ve~k~~~-~F~I~ 112 (151)
T 1w1g_A 47 VENNLILKMGPVDKR-KGL---FARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAKNFK-TFFVH 112 (151)
T ss_dssp TTTCCEEEEEEEEEE-ETT---EEEEEEEEEETTTEEEEEETTTTE---------EEEEECCCTTCEEEESSSS-EEEEE
T ss_pred CCCCcEEEEEEEEec-ccC---cceeEEEEEcCCceEEEEcCcccc---------ccceEecCCCeeEEEcCCC-EEEEE
Confidence 356789999988843 342 399999999999999999887663 5566888876666555433 34444
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
++ +|+|+|.+. ...+++|++||+.++..
T Consensus 113 Tp----~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 113 TP----NRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp ET----TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred CC----CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 54 399999997 88999999999999863
No 84
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.82 E-value=1.1e-08 Score=99.61 Aligned_cols=100 Identities=22% Similarity=0.281 Sum_probs=68.5
Q ss_pred EEEeeEeee-cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCC
Q 002819 21 KSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (876)
Q Consensus 21 KeG~L~l~K-kG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~ 99 (876)
-.|||-+.+ ++...|.||+||||++++.|+|||++.+.. +.+...+.|.||.+.+.-+ ....||.+.+.....+
T Consensus 28 L~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDVn---va~~Kf~ikL~ip~~~ 102 (165)
T 4bbk_A 28 LADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDVN---VSGRKFGIKLLIPVAD 102 (165)
T ss_dssp EEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEEE---TTTTEEEEEEEEEETT
T ss_pred hHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEecccc---cccceeeEEEecCCCC
Confidence 458776443 566689999999999999999999998864 3344456677776664222 1456665655332233
Q ss_pred -CceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 100 -GRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 100 -gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
-..++|.|+|+.+..+||.|++-+..
T Consensus 103 gm~e~~LrcdsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 103 GMNEVYLRCDHEDQYARWMAACILASK 129 (165)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cceeeeeecCCHHHHHHHHHHhhhccc
Confidence 35999999999999999999998864
No 85
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.80 E-value=2.2e-08 Score=98.63 Aligned_cols=100 Identities=17% Similarity=0.290 Sum_probs=72.8
Q ss_pred EEEeeEeee-cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEE-ecCCC
Q 002819 21 KSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDGR 98 (876)
Q Consensus 21 KeG~L~l~K-kG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI-t~~~~ 98 (876)
-.+||-+.+ ++...|.||+||||++++.|+|||++.+.. +.+...+.|.||.+.+...+ ...||++.+ .|...
T Consensus 49 L~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDVnv---a~~Kf~IkL~vP~~~ 123 (173)
T 4f7h_A 49 LADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDVNI---SGQKFNIKLLIPVAE 123 (173)
T ss_dssp EEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEEET---TTTEEEEEEEEEETT
T ss_pred hHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccccc---cccceeEEEeccCCC
Confidence 458776443 566789999999999999999999988853 33444566777776653221 345554433 44333
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 99 ~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
....|+|.|+|+..+.+||.|++-+..
T Consensus 124 gm~e~~Lrcd~E~qya~WMAAcrLAsk 150 (173)
T 4f7h_A 124 GMNEIWLRCDNEKQYAHWMAACRLASK 150 (173)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcceeeeecCCHHHHHHHHHHhhhhcc
Confidence 457999999999999999999998865
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.54 E-value=2.6e-07 Score=87.15 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=73.9
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec--------c
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~--------~ 85 (876)
..++.++|+| |+...+...+.|||+|++|+..++.||+++.... ..+.|.|..+-.+... .
T Consensus 3 ~~~s~vlkeG--W~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~---------~ykeIpL~eIl~v~~~~~~~~l~~~ 71 (125)
T 2coa_A 3 SGSSGTLREG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNR---------YYKEIPLSEILTVESAQNFSLVPPG 71 (125)
T ss_dssp CCCCSCSEEE--EEEECCSSSCCCEEEEEEECSSEEEEESSSSCSS---------CSEEEETTTCCEEEESCCCSSSCTT
T ss_pred CCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeeeeehhHeecccccccccccCCC
Confidence 5678899999 5457777788999999999999999999987765 3444555554443332 1
Q ss_pred CCceEEEEecCCCCCceEEEEeC-----------CHHHHHHHHHHHHHHHh
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAE-----------TSEDLYEWKTALELALA 125 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAd-----------SeeE~~eWI~AIr~al~ 125 (876)
...+||.|... .++||++++ -.+.+..|..||+.|+.
T Consensus 72 ~~~hcFEi~T~---~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm 119 (125)
T 2coa_A 72 TNPHCFEIVTA---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM 119 (125)
T ss_dssp SCCEEEEEECS---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred CCCceEEEEeC---CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence 24489988653 589999984 13679999999999986
No 87
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1e-06 Score=83.39 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec--------c
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~--------~ 85 (876)
..++.|+|+||+- ..+..-+.|||+|++|+..+|.+|+++.... ..+.|.|..+-.+... .
T Consensus 3 ~~~s~vlkeGWmV--H~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k---------~ykeIpLseIL~v~~~~~~~~~~~~ 71 (129)
T 2d9z_A 3 SGSSGMVKEGWMV--HYTSRDNLRKRHYWRLDSKCLTLFQNESGSK---------YYKEIPLSEILRISSPRDFTNISQG 71 (129)
T ss_dssp SCCTTSEEEEEEE--EEESSCCCCEEEEEEEESSCEEEESCSSCCS---------CCCEECTTTCCEECCTTCCCCSSSC
T ss_pred CCCCceeecceEE--EEccCCccccceeeEecCCeEEEEecCCCCc---------eeceeeHHHhcccccccCccccCCC
Confidence 5678999999554 5555667899999999999999999987654 2233444333222221 1
Q ss_pred CCceEEEEecCCCCCceEEEEeCC---------------HHHHHHHHHHHHHHHh
Q 002819 86 DKKLLTVLFPDGRDGRAFTLKAET---------------SEDLYEWKTALELALA 125 (876)
Q Consensus 86 ~Kk~~fvIt~~~~~gRty~LqAdS---------------eeE~~eWI~AIr~al~ 125 (876)
...+||.|... ..+|++.++. .+.+..|..||+.|+.
T Consensus 72 ~~phcFEi~T~---~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 72 SNPHCFEIITD---TMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp SCCCSEEEECS---SCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEC---CEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 23489988643 5899998853 7999999999999996
No 88
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.63 E-value=0.00081 Score=63.98 Aligned_cols=106 Identities=19% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCCceEEEEeeE-eeec-----CCCCCCcEEEEEEEeC------CeeeEecCCCCCCCCCCcceeeeeCcE-EeCCCcc
Q 002819 14 GASNTVFKSGPLF-ISSK-----GIGWKSWKKRWFILTR------TSLVFFKNDPSALPQRGGEVNLTLGGI-DLNNSGS 80 (876)
Q Consensus 14 ~~~~~VvKeG~L~-l~Kk-----G~~~k~WKKRWFVL~~------~~L~YYKd~~~~~p~~~~ev~i~Lg~I-~L~~~~s 80 (876)
...-.++|+|.|. +... ......|.|+|+||+. ..|-||..++..+|+.+ +++..| ++..++.
T Consensus 13 ~~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~----i~cs~I~EVR~tt~ 88 (136)
T 1v5m_A 13 VELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVS----IPLSAIIEVRTTMP 88 (136)
T ss_dssp CCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSC----EETTTCCBCCCCCC
T ss_pred cccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccc----cchhhhhhhhhccc
Confidence 4455789999774 2221 2346789999999974 26779988777765432 222222 2222222
Q ss_pred eeeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 81 VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 81 v~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.. -.++-+.|++.. .++-.|+|.|.++.+++.|++.|+..+..
T Consensus 89 LE-mPD~~nTFVlK~--~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 89 LE-MPEKDNTFVLKV--ENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp SS-SCCCTTEECCBC--TTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cc-cCCccceEEEEe--cCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 11 135667888864 34569999999999999999999988763
No 89
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.38 E-value=0.00048 Score=71.05 Aligned_cols=99 Identities=21% Similarity=0.380 Sum_probs=62.7
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCC-------eeeEecCCCCCCCCCCcceeeeeCcE-EeCCCcceeeccCCc
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGI-DLNNSGSVVVREDKK 88 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~-------~L~YYKd~~~~~p~~~~ev~i~Lg~I-~L~~~~sv~~~~~Kk 88 (876)
..++.||+. +-+- .|.||+|||||+.- .|..||+.++.........++.|..| -+... ..-+.+.
T Consensus 7 ~~~v~eg~v--k~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g---~~ldk~s 79 (224)
T 3ml4_A 7 EAALVEGQV--KLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPA---LPYEGLA 79 (224)
T ss_dssp CCCSEEEEE--EEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEE---EEETTEE
T ss_pred cceeEEEee--eeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCcccc---ccccCcc
Confidence 457889944 3222 35799999999862 68899998876433333444555442 12211 1123444
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
+...|...+ .+++|.+++.+.+..|-..|+..+.
T Consensus 80 ~TlAIIc~d---~~~vLAFds~e~l~~W~~~l~~slG 113 (224)
T 3ml4_A 80 HTLAIICLS---QAVMLGFDSHEAMCAWDTRIRYALG 113 (224)
T ss_dssp EEEEEEESS---CEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cEEEEEecC---cEEEEEeCCHHHHHHHHHHHhhccC
Confidence 444443332 7889999999999999999998764
No 90
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.34 E-value=0.00018 Score=74.77 Aligned_cols=40 Identities=25% Similarity=0.616 Sum_probs=33.8
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSA 58 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~ 58 (876)
..+.++|||+ |+|+..++|++|||||+++.|.||+.....
T Consensus 19 ~~~~~~g~l~--~~~~~~~~w~~rw~vl~~~~~~~~~~~~~~ 58 (228)
T 3tfm_A 19 GSPYFHSFLY--MNGGLMNSWKRRWCVLKDETFLWFRSKQEA 58 (228)
T ss_dssp --CCEEEEEE--ECCTTTCCCEEEEEEEETTEEEEESSCCCS
T ss_pred CCCceEEEEe--ecCcccccceEEEEEEeCCEEEEeccCCCc
Confidence 3467999777 778899999999999999999999977655
No 91
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.22 E-value=0.0012 Score=66.71 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=65.5
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC---cceeeeeCcEEeCCCcceeeccCCceEEEE
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG---GEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~---~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI 93 (876)
..++++|.|.++.. .+.|+.+|++|-...|+|-+...+...-.. ....+.+..+.+... ..+.+.+|+|
T Consensus 69 R~Ll~eG~L~~k~~---~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~-----a~d~~~~fli 140 (185)
T 2lg1_A 69 KKLVRDGSVFLKNA---AGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREV-----AHEEKGLFLI 140 (185)
T ss_dssp SCEEEEEEEEEECT---TCCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECC-----SSCSSEEEEE
T ss_pred CceeeeceEEEecc---CCCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEecc-----CCCCCeEEEE
Confidence 57899998864322 225899999999998877653322210000 001122333333221 1255667777
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap 128 (876)
.......+.|.|+|.|..+++.|+.+|+.|+...|
T Consensus 141 ~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~ 175 (185)
T 2lg1_A 141 SMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLN 175 (185)
T ss_dssp CCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence 64333357999999999999999999999997543
No 92
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.08 E-value=0.0036 Score=60.00 Aligned_cols=104 Identities=14% Similarity=0.269 Sum_probs=69.3
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecC
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~ 96 (876)
+.++..|.+.+.- + ..+.-+.|||+|-.+.|.|.+...... .-.-.-.+++.++.+..... ....+++|.|+.
T Consensus 26 G~ii~~s~v~~~~-~-~~~~~~eR~l~LF~~~Ll~~s~~~~~~-~f~~kgklPL~g~~V~~~ed---~~~~~~aFeI~g- 98 (132)
T 1v61_A 26 GNVIFMSQVVMQH-G-ACEEKEERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLDE---IEGSDCMFEITG- 98 (132)
T ss_dssp CCCSCEEEEEBCC-S-SSSCCCEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTTCS---SSSSCCCEEEEC-
T ss_pred CCeEEEeeEEEEE-c-ccCcceEEEEEEcCCeEEEEEecCCCc-eEEEEEEEecceeEEEeccc---cccCccEEEEec-
Confidence 3455555444322 1 122347899999999999888654211 11112235666666665321 245778999983
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002819 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (876)
Q Consensus 97 ~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap 128 (876)
.....+.+.|.|.+|+++|+.+|+.++..+|
T Consensus 99 -~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~~~ 129 (132)
T 1v61_A 99 -STVERIVVHCNNNQDFQEWMEQLNRLTKSGP 129 (132)
T ss_dssp -SSSCEEEECCCCSHHHHHHHHHHHHHHTTSC
T ss_pred -CCCceEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 4468899999999999999999999998665
No 93
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=96.98 E-value=0.0033 Score=69.33 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCC--Cc------------ceeeeeCcEEeCCCcce
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR--GG------------EVNLTLGGIDLNNSGSV 81 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~--~~------------ev~i~Lg~I~L~~~~sv 81 (876)
...++++|.|.+.. . .+.|+.|||.|-.+.|.|-+.......-. +. ...+++..+.+..
T Consensus 256 ~r~li~eG~l~~~~--~-~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e---- 328 (377)
T 3p6a_A 256 KKKLVHEGPLTWRV--T-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE---- 328 (377)
T ss_dssp TSCEEEEEEEEEES--S-SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEE----
T ss_pred cceEEEECCcEEEe--c-CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccc----
Confidence 35799999884322 1 23689999999999999988543221000 00 0113333333332
Q ss_pred eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
...+.+.+|++.........|.|+|.|.++.+.|+..|+.++...
T Consensus 329 -~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 329 -VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp -CTTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred -cccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 223555677776544456799999999999999999999999743
No 94
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=96.77 E-value=0.0045 Score=72.21 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC--------c------ceeeeeCcEEeCCCcce
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------G------EVNLTLGGIDLNNSGSV 81 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~--------~------ev~i~Lg~I~L~~~~sv 81 (876)
...++++|.|.+. +. ...|+.|||.|-.+.|+|-+...+...-.. . ...+.+..+.+..+
T Consensus 409 ~R~LI~eG~l~~~--~~-~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~--- 482 (536)
T 3odw_A 409 KKKLVHEGPLTWR--VT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREV--- 482 (536)
T ss_dssp TSCEEEEEEEEEE--SC-C---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEEC---
T ss_pred cceeeeecceEEE--ec-CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecc---
Confidence 4669999977533 21 235899999999999999885443210000 0 01233444433332
Q ss_pred eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCch
Q 002819 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ap~~ 130 (876)
..+.+.+|++.........|.|+|.|.+|.+.|+..|+.++..+..+
T Consensus 483 --~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~ 529 (536)
T 3odw_A 483 --ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVP 529 (536)
T ss_dssp --TTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC
T ss_pred --cccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCc
Confidence 23455667776543456799999999999999999999999866544
No 95
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.69 E-value=0.012 Score=54.63 Aligned_cols=104 Identities=14% Similarity=0.036 Sum_probs=62.1
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEe
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt 94 (876)
++..++++|.|..--.. ..+.=+++||.|-+..|.|-+-......+..-...+++..+.+... .....-+++|.|.
T Consensus 4 pgR~lv~eG~l~el~~~-~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~---~d~~~~~n~f~i~ 79 (113)
T 1zc3_B 4 PGQYLVYNGDLVEYEAD-HMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNV---KDNPPMKDMFKLL 79 (113)
T ss_dssp -CCCEEEEEEEEEEETT-TCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEE---CCBTTBSSEEEEE
T ss_pred CCeEEEEeCcEEEEccc-cCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEEC---CCCcccceEEEEE
Confidence 44567999966522211 1222356899999998888876433210000011123333333221 1123456677776
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 95 ~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.. .++|+|+|++.+|..+|+.+|++++.
T Consensus 80 ~~---~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 80 MF---PESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp ET---TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eC---CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 43 37899999999999999999999974
No 96
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=96.56 E-value=0.0098 Score=66.62 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=65.9
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC--------C------CcceeeeeCcEEeCCCcce
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--------R------GGEVNLTLGGIDLNNSGSV 81 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~--------~------~~ev~i~Lg~I~L~~~~sv 81 (876)
...++++|.|.+.. . ...|+.|||.|-.+.|+|-+.......- + .-...+.+..+.+...
T Consensus 292 ~r~li~eG~l~~~~--~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~--- 365 (418)
T 3t06_A 292 TRKMIHEGPLTWRI--S-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--- 365 (418)
T ss_dssp GSCEEEEEEEEECC--B-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC---
T ss_pred cceeEEeceEEEEe--C-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceeccc---
Confidence 36689999776332 1 2358999999999999998854332100 0 0011234444444321
Q ss_pred eeccCCceEEEEecCCCC-CceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 82 VVREDKKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~-gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
..+.+.+|++...... .+.|.|+|.|.++.+.|+.+|+.++..+
T Consensus 366 --~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~ 410 (418)
T 3t06_A 366 --ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 410 (418)
T ss_dssp --SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred --cccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 1344445555432212 2699999999999999999999999754
No 97
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.012 Score=66.12 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=62.4
Q ss_pred CCCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEE
Q 002819 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvI 93 (876)
.+...++++|.|..... +.++.|||.|-.+.|+|-+..+... ..-.-.+++..+.+... .....++.|.|
T Consensus 239 ~~~r~li~~g~l~~~~~----~~~~~r~~fLF~d~Ll~~k~~~~~~--y~~k~~i~L~~l~v~~~----~~~~~~~~f~i 308 (434)
T 3mpx_A 239 QPGREFLKEGTLMKVTG----KNRRPRHLFLMNDVLLYTYPQKDGK--YRLKNTLAVANMKVSRP----VMEKVPYALKI 308 (434)
T ss_dssp CTTCCEEECCEEEEEET----TEEEEEEEEEESSEEEEEEECTTSC--EEEEEEEEC-----CCC----CCTTSCSEEEE
T ss_pred cCCcceEecceEEEEeC----CCceEEEEEEECCEEEEEEecCCCe--EEEEEEEEcCCcEEEec----CCCCCCeeEEE
Confidence 34556899998764332 3489999999999999998543221 00011133333433321 12345677777
Q ss_pred ecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 94 t~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
... .+.|+|+|.|.+++..|+.+|+.++..
T Consensus 309 ~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 309 ETS---ESCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp ECS---SCEEEEECSSHHHHHHHHHHHHHC---
T ss_pred ecC---CeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 532 468999999999999999999999863
No 98
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.23 E-value=0.029 Score=61.65 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=63.2
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCC-----C---CCc------ceeeeeCcEEeCCCcce
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-----Q---RGG------EVNLTLGGIDLNNSGSV 81 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p-----~---~~~------ev~i~Lg~I~L~~~~sv 81 (876)
...++++|.|.+. +. .+.|+.|||.|-.+.|+|-+....... + +.. ...+++..+.+...
T Consensus 250 ~R~li~~G~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~--- 323 (368)
T 1xcg_A 250 TRKMIHEGPLTWR--IS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--- 323 (368)
T ss_dssp GSCEEEEEEEEEC--CS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC---
T ss_pred cceEEeecceEee--ec-CCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecc---
Confidence 4578999977632 21 345899999999999998886532100 0 000 01223333333221
Q ss_pred eeccCCceEEEEecCCC-CCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 82 VVREDKKLLTVLFPDGR-DGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~-~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
..+++.++++..... ....|.|+|.|.++.+.|+.+|+.++..
T Consensus 324 --~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 324 --ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp --SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --cCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 123444445543211 1379999999999999999999999864
No 99
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=95.94 E-value=0.073 Score=51.40 Aligned_cols=104 Identities=13% Similarity=-0.024 Sum_probs=63.9
Q ss_pred ceEEEEeeEeee--cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcc--eeeeeCcEEeCCCcceeeccCCceEEEE
Q 002819 18 TVFKSGPLFISS--KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE--VNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (876)
Q Consensus 18 ~VvKeG~L~l~K--kG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e--v~i~Lg~I~L~~~~sv~~~~~Kk~~fvI 93 (876)
..++.+-||--- -...++.-+.|+|-|-++.|.|-|-.+......... ..+++.|..+..... ..-.++|.|
T Consensus 12 rlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~----e~~p~~~~l 87 (140)
T 3qwm_A 12 RLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN----QYYPNGIRL 87 (140)
T ss_dssp CEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECC----SSCTTEEEE
T ss_pred eEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccC----CCCceEEEE
Confidence 378888776221 111134458999999999999997433221111111 234555554443222 345566766
Q ss_pred ecCCC---CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 94 FPDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 94 t~~~~---~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
..... ..+++.|+|.|..|+..|+.+|+.+|.
T Consensus 88 ~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 88 TSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp EECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 54221 237899999999999999999999985
No 100
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=95.92 E-value=0.022 Score=63.10 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=65.0
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCC------------CCCCc--ceeeeeCcEEeCCCcce
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL------------PQRGG--EVNLTLGGIDLNNSGSV 81 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~------------p~~~~--ev~i~Lg~I~L~~~~sv 81 (876)
...++++|.|.+. .. ...++.|||.|-.+.|.|-+...+.. +.++. .-.+.+..+.+..
T Consensus 254 ~R~li~eG~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~---- 326 (385)
T 1txd_A 254 KRKMIHEGPLVWK--VN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQ---- 326 (385)
T ss_dssp GSCEEEEEEEEEE--SS-SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceEEEECcEEEE--cC-CCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccc----
Confidence 3578999977633 21 24578999999999998877543211 00000 0112222332221
Q ss_pred eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
...+.+.+|+++......+.|.|+|.|.++.+.|+.+|+.++...
T Consensus 327 -~~~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~ 371 (385)
T 1txd_A 327 -VATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASV 371 (385)
T ss_dssp -CCC-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred -cccCCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 112345677776543345799999999999999999999998754
No 101
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=95.81 E-value=0.057 Score=58.06 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=64.2
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcce----eeeeCcEEeCCCcceeeccCCceEEE
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV----NLTLGGIDLNNSGSVVVREDKKLLTV 92 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev----~i~Lg~I~L~~~~sv~~~~~Kk~~fv 92 (876)
+.++..|.+.+...+...+.++.|||.|-.+.|.|-+...... +.... .+++..+.+... ..+..+.|.
T Consensus 201 g~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~y~~k~~i~l~~~~v~e~-----~~~~~~~F~ 273 (311)
T 1nty_A 201 GELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--GRSKYLYKSKLFTSELGVTEH-----VEGDPCKFA 273 (311)
T ss_dssp CCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--CCEEEEEEEEEEGGGEEEECC-----CTTCTTEEE
T ss_pred CCceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC--CCceeEEeeeeeccceeeEEc-----cCCCCceEE
Confidence 3567778665433222245679999999999999887543221 11111 123333333321 123345677
Q ss_pred EecC--CCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 93 LFPD--GRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 93 It~~--~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
+... ...+..|.|+|.|.++...|+.+|+.++..
T Consensus 274 i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 274 LWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp EEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 7542 123568999999999999999999999864
No 102
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=95.71 E-value=0.07 Score=58.28 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC---CCcceeeeeCcEEeCCCcceee--ccCCce
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ---RGGEVNLTLGGIDLNNSGSVVV--REDKKL 89 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~---~~~ev~i~Lg~I~L~~~~sv~~--~~~Kk~ 89 (876)
+....+++|.|. +.| .++.|||.|-.+.|.|-|........ .+.... ..+.|.+....-... ...-++
T Consensus 243 ~~r~li~eG~l~--~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~-~k~~i~l~~~~v~~~~d~~~~~~ 315 (354)
T 1dbh_A 243 CCNEFIMEGTLT--RVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYR-LKEKFFMRKVQINDKDDTNEYKH 315 (354)
T ss_dssp TCCCEEEEEEEE--ETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEE-EEEEEESCSCEEEECCCSSSCCS
T ss_pred ccceEEEEeeEE--EEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCccee-EEEEEeccceEEEeCCcccccCc
Confidence 356789999665 333 47899999999999988865421111 011111 122344443221111 123356
Q ss_pred EEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 90 ~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.|.|... ++..|.|+|.|.++...|+.+|+.+..
T Consensus 316 ~F~i~~~--~~~~~~l~a~s~~ek~~W~~~i~~~~~ 349 (354)
T 1dbh_A 316 AFEIILK--DENSVIFSAKSAEEKNNWMAALISLQY 349 (354)
T ss_dssp EEEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEecC--CCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 7877643 257999999999999999999999875
No 103
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=95.71 E-value=0.056 Score=51.22 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=31.5
Q ss_pred CceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 87 Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
...||.|...+ ..++..|.|+|.++++.|+..|+..+..
T Consensus 84 ~~~~FsIiy~~-~~k~LdlvA~s~~e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 84 EDRCFSIVFKD-QRNTLDLIAPSPADAQHWVQGLRKIIHH 122 (131)
T ss_dssp GGGEEEEEESS-SCCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred ccceEEEEECC-CCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 44688777654 2479999999999999999999998863
No 104
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.63 E-value=0.058 Score=59.23 Aligned_cols=106 Identities=10% Similarity=0.151 Sum_probs=63.6
Q ss_pred CCceEEEEeeEeeec--CC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCC-cce----eeeeCcEEeCCCcceeeccCC
Q 002819 16 SNTVFKSGPLFISSK--GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRG-GEV----NLTLGGIDLNNSGSVVVREDK 87 (876)
Q Consensus 16 ~~~VvKeG~L~l~Kk--G~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~-~ev----~i~Lg~I~L~~~~sv~~~~~K 87 (876)
...+++.|.+++... |. ..+.++.|||.|-.+.|.|-+........+. ... .+++..+.+... ..+.
T Consensus 204 ~~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~-----~~~~ 278 (354)
T 2rgn_B 204 QGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGN-----LQGD 278 (354)
T ss_dssp SCCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEES-----GGGC
T ss_pred hccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeec-----cCCC
Confidence 345889998775432 11 2346799999999999999886543211000 011 122333333211 1223
Q ss_pred ceEEEEecCCCC--CceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 88 KLLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 88 k~~fvIt~~~~~--gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
++.|.|+..+.. ...|.|+|.|.++...|+.+|+.++..
T Consensus 279 ~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 279 PCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp TTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 456766553322 479999999999999999999999863
No 105
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.50 E-value=0.11 Score=56.89 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=64.9
Q ss_pred CceEEEEeeEee---ecCCC------CCCcEEEEEEEeCCeeeEecCCCCCCCC--CCcce----eeeeCcEEeCCCcce
Q 002819 17 NTVFKSGPLFIS---SKGIG------WKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEV----NLTLGGIDLNNSGSV 81 (876)
Q Consensus 17 ~~VvKeG~L~l~---KkG~~------~k~WKKRWFVL~~~~L~YYKd~~~~~p~--~~~ev----~i~Lg~I~L~~~~sv 81 (876)
+..+++|.|.+. ++|.. +..++.|||.|-.+.|.|-|........ ..... .+++..+.+...
T Consensus 208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~--- 284 (353)
T 1kz7_A 208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITEN--- 284 (353)
T ss_dssp CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECC---
T ss_pred hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEc---
Confidence 458999987643 23310 2357899999999999998865422100 01111 122333333221
Q ss_pred eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
..+.+..|.|...+ ....|.|+|.|.++...|+.+|+.++..
T Consensus 285 --~~~~~~~F~i~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 326 (353)
T 1kz7_A 285 --VKGDTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLTS 326 (353)
T ss_dssp --BTTBTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCceEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 12335567776543 2478999999999999999999999864
No 106
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.47 E-value=0.068 Score=64.82 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=65.1
Q ss_pred eEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEec-CC
Q 002819 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (876)
Q Consensus 19 VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~-~~ 97 (876)
|++.|||-+...+.....=+.+||||+..+|.|||++.... ....+++.+..+.....- --.+++.|.++- ..
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 613 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTEQ 613 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEC---------CEEEEEEETTS
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhhhc----ccccccccccccchhhhc--cccccccccccCCcc
Confidence 99999888766555555568999999999999999976553 223456666665543210 013556666643 22
Q ss_pred C----CCceEEEEeCCHHHHHHHHHHHHHH
Q 002819 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (876)
Q Consensus 98 ~----~gRty~LqAdSeeE~~eWI~AIr~a 123 (876)
+ +.+..-|.|+|.++...|....-.|
T Consensus 614 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 643 (772)
T 3zvr_A 614 RNVYKDYRQLELACETQEEVDSWKASFLRA 643 (772)
T ss_dssp SCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhccccccchhhHHhhhhc
Confidence 2 3468899999999999999876443
No 107
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.24 E-value=0.14 Score=57.12 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=65.8
Q ss_pred CCCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceee---ccCCceEE
Q 002819 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLT 91 (876)
Q Consensus 15 ~~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~---~~~Kk~~f 91 (876)
+....+++|.|..... ..+.++.|||.|-.+.|.|-|..........-.-.+++..+.+........ ...-+++|
T Consensus 253 ~~r~Li~~G~l~~~~~--~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F 330 (402)
T 2dfk_A 253 RSSELIYTGEMAWIYQ--PYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAF 330 (402)
T ss_dssp TCCCEEEEEEEEEESS--TTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEE
T ss_pred cccceEEeceEEEEec--cCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeE
Confidence 4567899997764322 123579999999999999988543211000001123344444332111000 00123567
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.|.... .+..|+|+|.|.++...|+.+|+.+...
T Consensus 331 ~i~~~~-~~~~~~l~a~s~~eK~~Wi~~i~~a~~~ 364 (402)
T 2dfk_A 331 KLHNKE-TEEVHLFFAKKLEEKIRWLRAFREERKM 364 (402)
T ss_dssp EEEESS-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEECC-CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 765432 3579999999999999999999998764
No 108
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.11 E-value=0.14 Score=58.26 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee---eccCCceEEE
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTV 92 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~---~~~~Kk~~fv 92 (876)
....+++|.|..... ....++.|||.|-.+.|.|-|..........-.-.+++..+.+....... ....-+++|.
T Consensus 331 ~r~li~~G~l~~~~~--~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~ 408 (466)
T 2pz1_A 331 SSELIYSGELTRVTQ--PQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFR 408 (466)
T ss_dssp CSCEEEEEEEEEECT--TTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEE
T ss_pred cceeEEeeeEEEEec--CCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEE
Confidence 456899997764322 22357899999999999998854321100000011233333332211100 0012246777
Q ss_pred EecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 93 It~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
|... ..+..|+|+|.|.++...|+.+|+.+..+
T Consensus 409 i~~~-~~~~~~~l~a~s~~eK~~W~~~i~~a~~~ 441 (466)
T 2pz1_A 409 LHRG-ATGDSHLLCTRKPEQKQRWLKAFAREREQ 441 (466)
T ss_dssp EECS-SSCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEeC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 7643 23579999999999999999999999864
No 109
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=94.18 E-value=0.25 Score=55.00 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=64.3
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee-eccCCceEEEEec
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFP 95 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-~~~~Kk~~fvIt~ 95 (876)
+..+++|.|.+... ..+.++.||+.|-.+.|.|-+...... .-...+++..+.+....... ....-.+.|.|..
T Consensus 232 grli~~G~l~~~~~--~~~~~~~~~~fLF~d~Ll~~k~k~~~y---~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~ 306 (406)
T 2vrw_B 232 GRPKIDGELKITSV--ERRSKTDRYAFLLDKALLICKRRGDSY---DLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIE 306 (406)
T ss_dssp CSEEEEEEEEEECS--SCCSCEEEEEEEESSEEEEEEEETTEE---EEEEEEETTTEEEEC--------CTTCEEEEEEE
T ss_pred CcccccccEEEEec--CCCccceEEEEecCCEEEEEEecCCce---EEEEEecccceeeeecCCCCccCCccceeeEEEe
Confidence 34789997764432 234579999999999999887642111 00012334444443321100 0011235676654
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 96 ~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
. ...+.|.|+|.|.++.+.|+.+|+.++...
T Consensus 307 ~-~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 337 (406)
T 2vrw_B 307 D-QGAQGYELFFKTRELKKKWMEQFEMAISNI 337 (406)
T ss_dssp T-TCSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCceEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 2 235789999999999999999999998753
No 110
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.04 E-value=0.2 Score=63.12 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=44.4
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHH------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 002819 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ------------------------ALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~------------------------~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
...||..-.+||.|+..+.+.|+.||..+..-+. .+...-..|+++++.|++++++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999998888888887765431111 1122334566677777777777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 640 ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 640 E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
...-...||..+..- ..+|=+.|+-||.+...|+|++.+|...+-.+
T Consensus 1003 ~~ke~~~lee~~~~~-------------~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1003 TQTEKKTIEEWADKY-------------KHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655311 02444667788888888888888888544443
No 111
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=93.96 E-value=0.0098 Score=68.05 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCc----------ce-----eeeeCcEEeCCCcce
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG----------EV-----NLTLGGIDLNNSGSV 81 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~----------ev-----~i~Lg~I~L~~~~sv 81 (876)
..++++|.|++. +.++.|||.|-.+.|.|.+..+......+. .. .+++.++.+....
T Consensus 251 r~li~eG~l~~~------~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~-- 322 (510)
T 3jzy_A 251 RKLLHSGKLYKT------KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPT-- 322 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEeceEEEc------CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccC--
Confidence 457888877632 347899999999999998855443111110 01 1233333333211
Q ss_pred eeccCCceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 82 ~~~~~Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
.....+++|.|... .++|+|+|.|.++...|+.+|+.++..
T Consensus 323 -d~~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~ 363 (510)
T 3jzy_A 323 -DPSSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQ 363 (510)
T ss_dssp ---------------------------------------------
T ss_pred -CCCccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHH
Confidence 12345678888654 379999999999999999999999864
No 112
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.52 E-value=0.49 Score=44.34 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=28.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHH
Q 002819 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERR 623 (876)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r 623 (876)
.|..-.+||.+|..-.+.||.|+..+..-+.+..+.|
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556679999998888999999998886666554443
No 113
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.43 E-value=2.2 Score=42.26 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---C-------CCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ---F-------SSS-RGMDSKTRAELEEIALAEADVARLK 686 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~---~-------~~~-~~~p~~~~~ll~eia~~E~~v~~Le 686 (876)
.+..-|.+||+||..||.+|..|+.-|.--..-+.---|. | ... ..+-...+.|-+-|..||-+-+++|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455688999999999999999996554333211000000 0 000 1122234556666777777777777
Q ss_pred ----HHHHHHHHHHHHHHhhh
Q 002819 687 ----QKVAELHHQLNQQRQHH 703 (876)
Q Consensus 687 ----~~v~~l~~~l~~~~~~~ 703 (876)
=++..|+..+.|+..++
T Consensus 139 id~~~eLKalQ~~~eqE~~~H 159 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEVNEH 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776654
No 114
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=93.39 E-value=0.33 Score=52.76 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcce-----eeeeCcEEeCCCcc--eee-----
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV-----NLTLGGIDLNNSGS--VVV----- 83 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev-----~i~Lg~I~L~~~~s--v~~----- 83 (876)
....+++|.|.. ++ .+.|||.|-.+.|.|-+..... ++... .+++..+.+..... +..
T Consensus 229 ~r~li~~G~l~~--~~-----~~~~~~fLF~d~Ll~~k~~~~~---~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~ 298 (346)
T 2z0q_A 229 SRVLCCHGELKN--NR-----GVKLHVFLFQEVLVITRAVTHN---EQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLR 298 (346)
T ss_dssp CCCEEEEEEEEE--TT-----SCEEEEEEESSEEEEEEEEEET---TEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC-
T ss_pred CeEEEEeceeEE--CC-----CcEEEEEECCCcEEEEEEeccC---CceeeeeecCCcchhhceeeecCCCccccCcccc
Confidence 445789997652 22 2789999999999888753211 00011 13333333322111 000
Q ss_pred -----ccCCceEEEEecC-CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002819 84 -----REDKKLLTVLFPD-GRDGRAFTLKAETSEDLYEWKTALELAL 124 (876)
Q Consensus 84 -----~~~Kk~~fvIt~~-~~~gRty~LqAdSeeE~~eWI~AIr~al 124 (876)
....+++|.|... +..+..|+|+|.|.++...|+.+|+.++
T Consensus 299 g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 299 GAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp -CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 0123567877643 2346899999999999999999999886
No 115
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=93.22 E-value=0.27 Score=57.66 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=63.5
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCccee-eccCCceEEEEec
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFP 95 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~-~~~~Kk~~fvIt~ 95 (876)
+.++++|.|.+.. ...+.++.|||.|-.+.|.|-|...... .-...+++..+.+.....-. ....-++.|.|..
T Consensus 404 grll~~G~l~~~~--~~~~~~~~r~~fLF~d~Ll~~k~~~~~y---~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~ 478 (587)
T 3ky9_A 404 GRPKIDGELKITS--VERRSKMDRYAFLLDKALLICKRRGDSY---DLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIE 478 (587)
T ss_dssp CCEEEEEEEEEEC--SSCCSCEEEEEEEETTEEEEEEEETTEE---EEEEEEEGGGEEEEEC-----CCCTTCEEEEEEE
T ss_pred CceEEEeeEEEEe--ccCCCcceEEEEEECCEEEEEEecCCEE---EeeeeechhhceeeecCCCCcccccccceeEEEE
Confidence 3478999776433 2345689999999999999988652211 01112344444443321100 0011235666654
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002819 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (876)
Q Consensus 96 ~~~~gRty~LqAdSeeE~~eWI~AIr~al~~a 127 (876)
.. ..+.|.|+|.|.+++..|+.+|+.++...
T Consensus 479 ~~-~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~ 509 (587)
T 3ky9_A 479 DQ-GAQGYELFFKTRELKKKWMEQFEMAISNI 509 (587)
T ss_dssp TT-C---CEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 32 24789999999999999999999999643
No 116
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.11 E-value=1.9 Score=40.74 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (876)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~ 645 (876)
+.|...|..++..||..|..|+.+|..|.+...
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~ 100 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555444443
No 117
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=91.74 E-value=0.4 Score=60.21 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=64.1
Q ss_pred CCceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC---c----ceeeeeCcEEeCCCcceeeccCCc
Q 002819 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG---G----EVNLTLGGIDLNNSGSVVVREDKK 88 (876)
Q Consensus 16 ~~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~---~----ev~i~Lg~I~L~~~~sv~~~~~Kk 88 (876)
...++++|.|. +.+.+ +.|||.|-.+.|.|-|.........+ . .-.+++..+.+.... ....-+
T Consensus 441 ~r~Li~eG~l~--~~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~---d~~~~~ 511 (1049)
T 3ksy_A 441 CNEFIMEGTLT--RVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKD---DTNEYK 511 (1049)
T ss_dssp CSCCCCEEEEE--ETTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCC---CSSSCC
T ss_pred cceEEEeceEE--EEccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECC---CCcccc
Confidence 45688999765 33321 78999999999999887643221111 1 111233333332211 122345
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~~ 126 (876)
++|.|... ++..|+|+|.|.+++..|+.+|+.+..+
T Consensus 512 ~~F~I~~~--~~~~~~L~A~S~eeK~~Wi~~I~~~q~k 547 (1049)
T 3ksy_A 512 HAFEIILK--DENSVIFSAKSAEEKNNWMAALISLQYR 547 (1049)
T ss_dssp SEEEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcC--CCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 67877643 3579999999999999999999988753
No 118
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=91.68 E-value=1.5 Score=48.20 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=59.5
Q ss_pred CceEEEEeeEeeec-C--CCCCCcEEEEEEEeCCeeeE-ecCCCCCCCC-C----------Ccc----eeeeeCcEEeCC
Q 002819 17 NTVFKSGPLFISSK-G--IGWKSWKKRWFILTRTSLVF-FKNDPSALPQ-R----------GGE----VNLTLGGIDLNN 77 (876)
Q Consensus 17 ~~VvKeG~L~l~Kk-G--~~~k~WKKRWFVL~~~~L~Y-YKd~~~~~p~-~----------~~e----v~i~Lg~I~L~~ 77 (876)
+..+..|.+.+... + +.++..+.|++.|-.+.|++ .|.......+ + +.. ..+++..+.+..
T Consensus 236 g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~ 315 (377)
T 1foe_A 236 GDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRA 315 (377)
T ss_dssp GGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEEC
T ss_pred cceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEe
Confidence 45677775542211 0 11234578999999987776 4532111100 0 011 124444555443
Q ss_pred CcceeeccCCceEEEEecC-----CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 78 SGSVVVREDKKLLTVLFPD-----GRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 78 ~~sv~~~~~Kk~~fvIt~~-----~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
... .....+.+|.|... +...+.|.|+|.|.++...|+.+|+.++.
T Consensus 316 ~~~--~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 316 LPS--ADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp CCC--TTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC--CccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 221 01122345655421 23357899999999999999999999985
No 119
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=91.28 E-value=0.71 Score=55.33 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=60.5
Q ss_pred CCCCceEEEEeeEeeecCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeec-cCCceEE
Q 002819 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLT 91 (876)
Q Consensus 14 ~~~~~VvKeG~L~l~KkG~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~-~~Kk~~f 91 (876)
.....+++.|++. |.|+ ....|++|++.|.++.+.++...... .. .+.+..+..+... .....++
T Consensus 554 ~~~~~~i~~G~~~--k~~g~f~~~~~rR~~~l~p~r~e~~~e~~~~-----~~------l~~~~~v~~v~k~~i~~~~~l 620 (689)
T 3v5w_A 554 ALGKDCIMHGYMS--KMGNPFLTQWQRRYFYLFPNRLEWRGEGEAP-----QS------LLTMEEIQSVEETQIKERKCL 620 (689)
T ss_dssp TSSSCCCEEEEEE--EC-------CEEEEEEEETTEEEEECTTSCC-----CE------EEEGGGEEEEEEEESSSCEEE
T ss_pred ccCCcceeecccc--cCCCcccchhhhhccccCCCcccccccCCCC-----cc------eeeeccccccccCcCCCCcce
Confidence 3456688999655 5443 45689999999999998887643221 10 1222222211111 1333455
Q ss_pred EEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 92 vIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.+.. .++++|++++++..++.+|..+|+.+..
T Consensus 621 ~~~~--k~~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 621 LLKI--RGGKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp EEEE--TTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eeee--cCCcEEEEECCChHHHHHHHHHHHHHHH
Confidence 5544 5689999999999999999999998875
No 120
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=90.33 E-value=0.9 Score=41.25 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~--~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
..||..|++.|.+|++.+++|..=|.+|++-..- ....+..|..+-.+.-+.-..|..|.+++-+++..+.++..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999976532 12234455556556666666788888888888888888743
No 121
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.86 E-value=2.7 Score=37.13 Aligned_cols=79 Identities=28% Similarity=0.429 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHH
Q 002819 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAE 671 (876)
Q Consensus 592 ~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~l 671 (876)
.+||.+|..-.-.|+.|+..+. -+...|..++.+.+.|..+|..+|.-+. ..+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~d-----------n~~~~~edfk~KyE~E~~~R~~~E~d~~--------------~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERD-----------NLAEDIMRLREKLQEEMLQREEAENTLQ--------------SFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhh
Confidence 3678888766666666665544 3667888899999999999999998775 23455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 672 LEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 672 l~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
+.+..+.=.+ ||.+|..|...|.=
T Consensus 58 vD~a~l~r~d---LE~kvesL~eEl~f 81 (86)
T 3swk_A 58 VDNASLARLD---LERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6666555444 78888887776653
No 122
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.13 E-value=3.4 Score=47.94 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
++.-+++..+|.++.+||+++...+.++.+.+++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 4566777777788888888777777777766654
No 123
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.11 E-value=9.1 Score=34.57 Aligned_cols=53 Identities=25% Similarity=0.441 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
++......+-++.+|+.+|.+|+..|... |.+...+++.|.+|-..||.
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~a-------------------------------E~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKA-------------------------------EEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 34444557888889999999999988754 44556677777777777777
Q ss_pred HHhh
Q 002819 699 QRQH 702 (876)
Q Consensus 699 ~~~~ 702 (876)
|-|.
T Consensus 66 EAN~ 69 (97)
T 2eqb_B 66 EANN 69 (97)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 124
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.78 E-value=6.5 Score=44.29 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRA-------ALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~-------~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~ 690 (876)
+.+.++..|+|++.++|+-|++=+.--. +|... |..++-.-+.-|.-+|.+|..|++++.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS-------------LDAEKAQGQKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999988765432211 12222 233333345788889999999999999
Q ss_pred HHHHHHHHHH
Q 002819 691 ELHHQLNQQR 700 (876)
Q Consensus 691 ~l~~~l~~~~ 700 (876)
+++.++-++|
T Consensus 461 ~~~~~~~~~~ 470 (471)
T 3mq9_A 461 DASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999887775
No 125
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.10 E-value=32 Score=32.24 Aligned_cols=37 Identities=41% Similarity=0.450 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
.+.+++.+.+....|.++...|+.||+.|+++-.-.+
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~E 68 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3677888899999999999999999999998854433
No 126
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.97 E-value=4.1 Score=41.11 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVA 683 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~ 683 (876)
-.+--..|+.+|+||.|+-
T Consensus 136 e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 136 EQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455578888899888865
No 127
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.08 E-value=45 Score=34.72 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
+...++|..||..++..+..||.++.++..++-..
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888888888777777766443
No 128
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=76.31 E-value=1.6 Score=33.85 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhhhhHhHhH
Q 002819 593 DLRHRIAKEARGNAILQASL 612 (876)
Q Consensus 593 ~~~~~~~~~~~~n~~~q~~~ 612 (876)
.|.+|++-..|+||.|...+
T Consensus 7 qlknrvayklkenakleniv 26 (56)
T 3he4_A 7 QLKNRVAYKLKENAKLENIV 26 (56)
T ss_dssp ----CCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHH
Confidence 45666666777777665543
No 129
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.90 E-value=22 Score=41.00 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 673 EEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
.++....++..+||+++..|..++.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 530 TEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhcchhhHHhhhHHHHHHHh
Confidence 3333333333333334434433333
No 130
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=71.61 E-value=5.9 Score=41.92 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=38.4
Q ss_pred eeeeeCcEEeCCCcceeeccCCceEEEEecCCCCC-ceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 66 VNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 66 v~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~g-Rty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
..++|..+.+.-... ..+.+.++|.+.. .+| .+++|+|++.+++..|+.+|..++.
T Consensus 206 ~~ipL~m~~~tR~~~--~~d~~~~~fev~s--~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 206 KHVSLKMAYVSRRCT--PTDPEPRYLEICA--ADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp EEEESSSEEEEEECC--SSCSSSCEEEEEE--TTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cccCcceeeeeeecc--ccCCCCceEEEEC--CCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 345555555543221 2234677887764 234 4699999999999999999998874
No 131
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.90 E-value=50 Score=34.34 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=30.5
Q ss_pred HHHHhHhhhhhHHHHHHHH------HHhhhhhhHhHh------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIA------KEARGNAILQAS------LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~------~~~~~n~~~q~~------~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
+..|.++|..-.+++.||. ..|+.|.-+++- +++|...+.+.-.++...++.++..+.+-......++
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555552 235555444432 2333333344444444444444444444444444444
Q ss_pred H
Q 002819 649 V 649 (876)
Q Consensus 649 ~ 649 (876)
.
T Consensus 139 ~ 139 (256)
T 3na7_A 139 K 139 (256)
T ss_dssp H
T ss_pred H
Confidence 3
No 132
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.08 E-value=38 Score=38.01 Aligned_cols=87 Identities=10% Similarity=0.115 Sum_probs=56.6
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRG---MDSKTRAELEEIALAEADVAR 684 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~---~p~~~~~ll~eia~~E~~v~~ 684 (876)
||-.|-+....+...=..||.-|.+|+..-..=..|..+|....+. ++-+.|.. +-.+.+.+++||..+|..|..
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666666666677777777777777667777777777543 32233322 245777899999998886666
Q ss_pred HHHHHHHHHHHH
Q 002819 685 LKQKVAELHHQL 696 (876)
Q Consensus 685 Le~~v~~l~~~l 696 (876)
-|..+..|+.+|
T Consensus 103 ~~~~i~~l~~~~ 114 (409)
T 1m1j_C 103 HENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 665555555433
No 133
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.59 E-value=47 Score=30.76 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 622 RRLALEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
.|..+|.|+..|++.|..+.-.|.-||.
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 4566666666666666666666655554
No 134
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=67.66 E-value=37 Score=29.84 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=36.5
Q ss_pred HHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHER--RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 612 ~~~rk~~~~~~--r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v 689 (876)
..+|..|..++ |..=.+.+..|++.|.+|++-|. .+|.-+|..|.++.+.|
T Consensus 22 FgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~---------------------------~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 22 FGKREQAEEERYFRARAKEQLAALKKHKENEISHHA---------------------------KEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHH
Confidence 34555555444 33334445667777777766554 67778888888888888
Q ss_pred HHHHH
Q 002819 690 AELHH 694 (876)
Q Consensus 690 ~~l~~ 694 (876)
..|..
T Consensus 75 ~~l~~ 79 (84)
T 1gmj_A 75 KKLKQ 79 (84)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87764
No 135
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.22 E-value=48 Score=32.32 Aligned_cols=53 Identities=25% Similarity=0.441 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
+...+...+.++.+|+.+|.+|+..|...| .+...+|++|.+|-..||.
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE-------------------------------~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAE-------------------------------EEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999999998554 4555666677777777777
Q ss_pred HHhh
Q 002819 699 QRQH 702 (876)
Q Consensus 699 ~~~~ 702 (876)
|-|.
T Consensus 98 EAN~ 101 (154)
T 2ocy_A 98 EANN 101 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 136
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=64.32 E-value=9 Score=38.31 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=29.1
Q ss_pred CceEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 87 Kk~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
...+|.|...+ ...+.+|+|.+..++..|+.+|...+.
T Consensus 140 e~r~fEv~s~D-G~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 140 EPRYLEICAAD-GQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp SSCEEEEEETT-TTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEcCC-CCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 45577665321 134899999999999999999998764
No 137
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=64.17 E-value=9.9 Score=48.31 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (876)
.+...+..|++++..|+.+|+++..-...|+..+
T Consensus 917 ~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~ 950 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777777766666555554443
No 138
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=61.71 E-value=13 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (876)
||-+=+.|-.+...||++|.||++-|-+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 5666667888889999999999987753
No 139
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=61.47 E-value=10 Score=27.60 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=22.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.||-+=+.|-.+..+||.||.+|+.-|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3566666777888999999999998764
No 140
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=60.47 E-value=14 Score=27.29 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
||-+=..+-.+...||++|.||++-|-
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 555666777888999999999998764
No 141
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.39 E-value=77 Score=39.94 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 667 KTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
++..|=.|.+.||..+..||..+...
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666444444
No 142
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=60.13 E-value=11 Score=27.26 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=22.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.||-+=+.+-.+..+||.||.+|+.-|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3566667778888999999999998764
No 143
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=59.75 E-value=32 Score=33.96 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
++|=.=++.|+..-..||+++..|+.+|.+||.
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554
No 144
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.65 E-value=13 Score=42.59 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 002819 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (876)
Q Consensus 624 ~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~ 683 (876)
.+||+.+..|+..++..+..-++|+..|. +++.+|--||.+|.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLe-----------------dq~~kIQRLEvDId 155 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVR-----------------AQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 35777777777777777666666666554 67777777777763
No 145
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=59.53 E-value=1.2e+02 Score=34.48 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=18.8
Q ss_pred hHhHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 607 ILQASLERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 607 ~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
.||++++.+...+.+....+.+-...|+++.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4888888777766666555544444444433
No 146
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=59.48 E-value=11 Score=27.42 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.||.+=..|-.+-..||+||.||+.-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4677777888899999999999987653
No 147
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.73 E-value=18 Score=34.49 Aligned_cols=49 Identities=24% Similarity=0.442 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002819 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (876)
Q Consensus 624 ~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (876)
.-.+.++.+|+.+|++|+..|... |.+...+++.|.+|-..||.|-|..
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~a-------------------------------E~~~~~ie~ElE~LTasLFeEAN~M 90 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKA-------------------------------EEEADKLNKEVEDLTASLFDEANNL 90 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHH-------------------------------HHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999998854 4556667888888888888888754
No 148
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=58.35 E-value=16 Score=26.61 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=22.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.||-|=..|-.+..+||.+|.+|+.-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4667777888888999999999987663
No 149
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=58.07 E-value=20 Score=28.88 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (876)
+|++.=.+|.||..+|++-|++|+.-|.-||..+-
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788999999999999999999999998663
No 150
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.63 E-value=32 Score=26.06 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002819 675 IALAEADVARLKQKVA 690 (876)
Q Consensus 675 ia~~E~~v~~Le~~v~ 690 (876)
||-||.+|++|-+++.
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6778888888877763
No 151
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=56.07 E-value=45 Score=30.25 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=49.4
Q ss_pred HHHHHhHhhhhhHHHHHHH-HHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 580 EELAIQRLEITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
+-.+-+|||..|.+-+..| .-|++..+||...=.+-+.-.-+||..++.+|.+.+.+-
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457789999999999999 569999999999877777777899999999999887654
No 152
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=55.87 E-value=15 Score=26.83 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=22.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.||-+=+.+-.+-..||+||.||++-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3566667788888999999999998664
No 153
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=55.71 E-value=1.6e+02 Score=29.10 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=60.8
Q ss_pred HHHHHhHhhhhhHHH----HHHHHHHhhhh-hhHhHhHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 580 EELAIQRLEITKNDL----RHRIAKEARGN-AILQASLERRKQAL-------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~----~~~~~~~~~~n-~~~q~~~~~rk~~~-------~~~r~~LeqeV~~Lq~qL~~E~~l~~~L 647 (876)
.-..+++|-.+=+.| +.++....-.+ +.||.+|.+|+..+ ..-+.+||++...|+.++..=..-..-+
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665554443 44445554444 45899999998875 4445556666666665533211111122
Q ss_pred HHhhcCCC-CCCC------CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 648 EVGLSMSS-GQFS------SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 648 e~al~~~~-~~~~------~~~~~p~~~~~ll~eia~~E~~v~~Le~~v 689 (876)
+.-...++ +... .+.-+-.+.-++.+|...+|..|-.|.+=+
T Consensus 90 ~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al 138 (174)
T 2p22_A 90 QQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRML 138 (174)
T ss_dssp HHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22121121 2211 223344677899999999999988876543
No 154
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=55.48 E-value=23 Score=32.87 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=58.3
Q ss_pred CceEEEEeeEeeecCCCCCCcEEEEEEEeCCeeeEecCCCCCC-CCCCcceeeeeCcEEeCCCcceeeccCCceEEEEec
Q 002819 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL-PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (876)
Q Consensus 17 ~~VvKeG~L~l~KkG~~~k~WKKRWFVL~~~~L~YYKd~~~~~-p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~ 95 (876)
+.+++.|++.+.... +.=+.|++-|-...|.|-|-..... +...-.-.+.+..+.|+.. ...+....|.+..
T Consensus 8 G~Ll~q~~f~V~~~~---~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~----~~~~d~~kFeiw~ 80 (119)
T 1fho_A 8 GRIIRHDAFQVWEGD---EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQH----TTDEDTIVLQPQE 80 (119)
T ss_dssp CCSSEEEEEEECSTT---CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEE----CTTCCEEEEECCS
T ss_pred CCccccCceEEEeCC---CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEec----CCCCCCcEEEEcc
Confidence 456778866654321 2247899999999999988652110 0000011222333333321 1113345587765
Q ss_pred CCCCCceEEE--EeCCHH-HHHHHHHHHHHHH
Q 002819 96 DGRDGRAFTL--KAETSE-DLYEWKTALELAL 124 (876)
Q Consensus 96 ~~~~gRty~L--qAdSee-E~~eWI~AIr~al 124 (876)
.+. ...|.+ +|.|.+ ..+.|+..|+...
T Consensus 81 ~~~-~~~~il~~qA~s~e~~K~~Wv~~I~~~~ 111 (119)
T 1fho_A 81 PGL-PSFRIKPKDFETSEYVRKAWLRDIAEEQ 111 (119)
T ss_dssp TTC-CCBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred CCC-CceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence 432 357888 999999 9999999999844
No 155
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=55.29 E-value=1.6e+02 Score=28.89 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002819 626 LEQDVSRLQE 635 (876)
Q Consensus 626 LeqeV~~Lq~ 635 (876)
|+.++.+++.
T Consensus 95 ~~~~~~~~~~ 104 (284)
T 1c1g_A 95 FEEELDRAQE 104 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 156
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.17 E-value=67 Score=30.11 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (876)
|-..|..|+-+|+.-+.++..||+.|.-. . ...=.++..+...|..||..+..++..+-++-
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~------------e-~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET------------K-GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888899999887411 1 11223455566666666766666666655543
No 157
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=54.61 E-value=20 Score=26.10 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
||-+=+.|-.+...||++|.+|++-|
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55566677788889999999998765
No 158
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.49 E-value=53 Score=36.84 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=53.9
Q ss_pred HhHhHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQAL-HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (876)
Q Consensus 608 ~q~~~~~rk~~~-~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le 686 (876)
++.++.+|.... -+.=.+|.++-..|+.+++.=+.-|..+.+.+....| ..+.+|++++..|-++|..||
T Consensus 14 ~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~---------~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 14 FHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP---------EEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccHHHHHHHHHHHHHHHHHHH
Confidence 444455554321 2333344444444454444444556667776654211 467889999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 002819 687 QKVAELHHQLNQQRQ 701 (876)
Q Consensus 687 ~~v~~l~~~l~~~~~ 701 (876)
+++..+..+|...--
T Consensus 85 ~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 85 EALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998866544
No 159
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.96 E-value=9.4 Score=25.87 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 002819 667 KTRAELEEIALAEADVARLKQ 687 (876)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~ 687 (876)
+.-.|-.|||.||-+|+-|||
T Consensus 8 knarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 8 KNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhcC
Confidence 344577889999999988876
No 160
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.58 E-value=39 Score=29.46 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhhhhhhHhHhHHHhHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 002819 590 TKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 590 ~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~----------~~~r~~LeqeV~~Lq~qL~~ 639 (876)
..-+||+....|++.-..+|--|.+=|.++ ..+-..|+.|+.+|++++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788888888888888887776655533 44566799999999999887
No 161
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.25 E-value=25 Score=24.64 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 674 EIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
|||.|-.||+-|++++..|++.+-.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665543
No 162
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=52.16 E-value=78 Score=27.93 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~e----ia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
.||+..+.|++++.+|..++.--|+-+ +-+.+ .+-|+.++.....++.+||.+|..
T Consensus 22 ~le~~r~~ir~eI~KElKiKeGaENL~------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 22 QLELERERLRREIRKELKLKEGAENLR------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhHHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777776555432 22222 456788888899999999988854
No 163
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=51.83 E-value=24 Score=25.55 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
||-+=+.+-.+...||+||.+|++-|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 56666677788899999999998765
No 164
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.56 E-value=1.4e+02 Score=27.48 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
|..=-.|.-++.+|+++|.++...|.-||..++. +..+==.+|+.|=+-|..=|+.+.+|+.-..|-
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~-------------k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQ-------------SSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444568888999999999999999999998752 333444555555555555555555555544444
Q ss_pred Hh
Q 002819 700 RQ 701 (876)
Q Consensus 700 ~~ 701 (876)
++
T Consensus 72 q~ 73 (112)
T 1x79_B 72 KR 73 (112)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 165
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=50.43 E-value=23 Score=26.14 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAE 691 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (876)
-.|+.+||.+-.-||.+|.+|+.-+.+
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 356778899999999999988876644
No 166
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=50.25 E-value=1.3e+02 Score=30.28 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=70.5
Q ss_pred HHhHhhhhhHHH---HHHHHHHhhhhhhHhHhHHHhHHHH----------------------------------------
Q 002819 583 AIQRLEITKNDL---RHRIAKEARGNAILQASLERRKQAL---------------------------------------- 619 (876)
Q Consensus 583 ~~~~~~~~~~~~---~~~~~~~~~~n~~~q~~~~~rk~~~---------------------------------------- 619 (876)
+|..|...=.+| |..|..|++.|+.|.+.|+..=+..
T Consensus 20 Li~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~ 99 (190)
T 3thf_A 20 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETR 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccC
Confidence 444444444433 5678999999999888877543311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 002819 620 HERRLALEQDVSRLQEQLQAERD-----------LRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQ 687 (876)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~-----------l~~~Le~al~~~~~~~~-~~~~~p~~~~~ll~eia~~E~~v~~Le~ 687 (876)
++-|..|.+--..|+.|+.+=+. ++.+|.+.|.. ..+. .-.++-.| -+||.|-.-|++-|--.|+
T Consensus 100 ~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~--eql~DY~~fv~mK-a~Ll~eqReLddkIklgeE 176 (190)
T 3thf_A 100 QQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSA--DMCADYDYFINMK-AKLIADARDLAVRIKGSEE 176 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHH
Confidence 44477788888889999876554 44555554431 1111 11223333 3688888889999988888
Q ss_pred HHHHHHHHHHH
Q 002819 688 KVAELHHQLNQ 698 (876)
Q Consensus 688 ~v~~l~~~l~~ 698 (876)
|+..|+..|-|
T Consensus 177 QL~~L~~sL~q 187 (190)
T 3thf_A 177 QLSSLSDALVQ 187 (190)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHHHhhcc
Confidence 88888765544
No 167
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.16 E-value=1.6e+02 Score=28.63 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
..|...+..|++.+..|...|++=..+-.+|...+. .|=.+..++|..+.+|+++=..|=.++
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~-----------------aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI-----------------SGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677788888777777766666665555443 666777888888888888776666555
Q ss_pred HHHHh
Q 002819 697 NQQRQ 701 (876)
Q Consensus 697 ~~~~~ 701 (876)
-+...
T Consensus 134 M~rk~ 138 (152)
T 3a7p_A 134 LKKTE 138 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 168
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.32 E-value=1.5e+02 Score=32.96 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=40.4
Q ss_pred hhhHhHhHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 002819 605 NAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEAD 681 (876)
Q Consensus 605 n~~~q~~~~~rk~~~~~~r~~---LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~ 681 (876)
++.||-.|.+-++-+.+-|.+ --.-|..||.-|+++..-.. .+++||=.||..++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ--------------------KKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 344566655555544444333 33456666666666654321 1456777777777777
Q ss_pred HHHHHHHHHHHH
Q 002819 682 VARLKQKVAELH 693 (876)
Q Consensus 682 v~~Le~~v~~l~ 693 (876)
+.+++-+|.+|+
T Consensus 459 ~~~~~~~~~~~~ 470 (471)
T 3mq9_A 459 LQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777777777665
No 169
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=49.12 E-value=23 Score=26.76 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 673 EEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
+|+|.||.++.-||+++..|+..|.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999887764
No 170
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.02 E-value=55 Score=41.55 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 619 LHERRLALEQDVSRLQEQLQAERD 642 (876)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (876)
+.++...|+++...|+.+|++|+.
T Consensus 883 le~~l~~Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 883 LEQKHTQLCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555544433
No 171
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=48.59 E-value=2.1e+02 Score=28.22 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=47.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 002819 613 ERRKQALHERRLALEQDVSRLQEQLQAERD------------LRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEA 680 (876)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~------------l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~ 680 (876)
+.-.+...+.+.+||+|-++|++ +..|++ ||..|-.|-+ .+++.-.=.=|++|++
T Consensus 19 e~aek~~~~k~~~le~ek~~l~~-~e~~r~k~~~h~~~k~~qlre~~d~gtt------------~~~i~~m~~yI~llrE 85 (169)
T 3k29_A 19 DRAEKVVKEKRRLLELEQEKLRE-RESERDKVKNHYMQKIRQLREQLDDGTT------------SDAILKMKAYIKVVAI 85 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHH
Confidence 33444566777788888777764 233332 3333433222 3455555566888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002819 681 DVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 681 ~v~~Le~~v~~l~~~l~~~~~ 701 (876)
..+.||++|.+...++-.++.
T Consensus 86 rea~lEqkVaeq~e~Ve~e~q 106 (169)
T 3k29_A 86 QLSEEEEKVNKQKENVLAASK 106 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877776665
No 172
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=47.89 E-value=2.1e+02 Score=28.03 Aligned_cols=8 Identities=0% Similarity=0.289 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002819 625 ALEQDVSR 632 (876)
Q Consensus 625 ~LeqeV~~ 632 (876)
.|..++..
T Consensus 199 ~~~~~~~~ 206 (284)
T 1c1g_A 199 TVTNNLKS 206 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 173
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=47.34 E-value=22 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
||-+=+.+-.+...||.||+||++-|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 555566777788899999999998664
No 174
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=46.76 E-value=41 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.3
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhh
Q 002819 578 GEEELAIQRLEITKNDLRHRIAKEAR 603 (876)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (876)
+.|-..-++||..|..|+..|.||.|
T Consensus 14 ~~d~~~q~~le~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 14 LAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456679999999999999999988
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.64 E-value=80 Score=35.43 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=40.3
Q ss_pred HhHhHHHhHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQA-L--HERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADV 682 (876)
Q Consensus 608 ~q~~~~~rk~~-~--~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~--~~~~~~~~~~~p~~~~~ll~eia~~E~~v 682 (876)
++.++.+|... . -+.=.+|.++-..|+.++++=+.-|..+...+.. ..| .-...|=.+++++=++|+.||+++
T Consensus 14 ~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 91 (425)
T 2dq3_A 14 VKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG--KDTTEIQNRVKELKEEIDRLEEEL 91 (425)
T ss_dssp HHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC--SCTTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555433 2 2444555555555665555555666677766653 222 111223344444444455444444
Q ss_pred HHHHHHHHHH
Q 002819 683 ARLKQKVAEL 692 (876)
Q Consensus 683 ~~Le~~v~~l 692 (876)
..+|+++..+
T Consensus 92 ~~~~~~~~~~ 101 (425)
T 2dq3_A 92 RKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 176
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=45.68 E-value=35 Score=25.18 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAE 691 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (876)
-.|+.+||.+-.-||.+|.+|...+.+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 356779999999999999999887654
No 177
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.65 E-value=1.1e+02 Score=28.39 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
|-..|..|+-+|+.=+..+..||+.|.-. .. ..=.++..+...|..||..+..++..+-++
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~------------e~-~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADA------------EQ-RGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44567788888888888899999887511 11 112245555666666666666666665544
No 178
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=45.64 E-value=43 Score=40.91 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=26.9
Q ss_pred eEEEEecCCC--CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 89 LLTVLFPDGR--DGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 89 ~~fvIt~~~~--~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.||.|+.... +-+.+.|.|.+.++++.|+..|+..+.
T Consensus 104 r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~ 142 (816)
T 3qr0_A 104 KCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAY 142 (816)
T ss_dssp HEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 3565554321 113458999999999999999999875
No 179
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=45.19 E-value=1.4e+02 Score=33.45 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=57.6
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS-RGMDSKTRAELEEIALAEADVARLK 686 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~-~~~p~~~~~ll~eia~~E~~v~~Le 686 (876)
||..|-+.......-=.+||..|.+|-..=.+=..+=.+|...+....-+.+.- ..+-.+.+..|+||..+|.-|.+.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 556666666666666667777777777766666777777777665332211111 2344566778999988888887777
Q ss_pred HHHHHHHHHHH
Q 002819 687 QKVAELHHQLN 697 (876)
Q Consensus 687 ~~v~~l~~~l~ 697 (876)
..+..|+..+.
T Consensus 105 ~~i~~l~~~~~ 115 (411)
T 3ghg_C 105 SSIRYLQEIYN 115 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666665543
No 180
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=43.44 E-value=1.1e+02 Score=36.04 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=34.0
Q ss_pred HHHhhhhhhHhHh-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 599 AKEARGNAILQAS-----LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (876)
Q Consensus 599 ~~~~~~n~~~q~~-----~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (876)
.++..+++||||- -++....-+.++.+.|++.+.|+++..+...+-.+=++
T Consensus 467 ~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 522 (592)
T 1f5n_A 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522 (592)
T ss_dssp HTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888874 34455566777788888888888776655555444333
No 181
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.43 E-value=96 Score=35.17 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.+.+|++++..|-++|..||+++.++..+|...--
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888866544
No 182
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.34 E-value=1.3e+02 Score=29.70 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
+.++++|..||+.|..+ |..+-.+++.++..+
T Consensus 112 eakI~aL~~Ei~~Lr~q---L~~~R~k~~~em~Ke 143 (175)
T 3lay_A 112 TAKINAVAKEMESLGQK---LDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 46778888888777766 455555556665444
No 183
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=42.80 E-value=41 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=24.5
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
|++-+..|...+.+|-.+||.-+..|+.+|+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888888888775
No 184
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.74 E-value=93 Score=35.83 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=50.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhcccccchhhhhccc
Q 002819 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQQRFLQQ 729 (876)
Q Consensus 663 ~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 729 (876)
+|-.++..-|..|++|+.-|.++=.+|.-|...+--|....++|=.-+.....-+..++.+||-+.|
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQ 187 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHH
Confidence 4556777788999999999999999999999999999988888765544444444555555665544
No 185
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.66 E-value=32 Score=24.95 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQK 688 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~ 688 (876)
-.|+.+||.++.-||.+|.+|..-
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357889999999999999998754
No 186
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=42.19 E-value=41 Score=23.59 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 002819 623 RLALEQDVSRLQE 635 (876)
Q Consensus 623 r~~LeqeV~~Lq~ 635 (876)
-.+|||||++|..
T Consensus 17 nyqleqevaqleh 29 (33)
T 1fmh_A 17 NYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 4679999997764
No 187
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.90 E-value=45 Score=25.55 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
+||.-|.-+-.||++-|+++.+|+.+|-+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888999999999999988877543
No 188
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=41.79 E-value=61 Score=28.46 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
++-|...|-..+..||..|..|+.+|
T Consensus 61 aEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 61 LEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666666655
No 189
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.71 E-value=1.3e+02 Score=26.58 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
.+-.|-+-||.++.+|...+.+++..
T Consensus 67 ~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 67 QLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555666666666666666544
No 190
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.67 E-value=53 Score=37.68 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
+.+|++|+..|-++|..||+++.++..+|.+.--
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999888876544
No 191
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=40.31 E-value=1.2e+02 Score=32.41 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=44.3
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHH
Q 002819 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELE 673 (876)
Q Consensus 609 q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~ 673 (876)
|+.+-.++..++..+.+|.+++.+|..+-..=.....+|++--....-.|..+..+-..++..|+
T Consensus 12 ~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le 76 (302)
T 3ibp_A 12 VSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLE 76 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHH
Confidence 34455667788888888999999888888887777788877655444445544445555555554
No 192
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=39.90 E-value=31 Score=25.03 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQ 687 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~ 687 (876)
-.|+.+||.|-.-||.||.+|..
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 35777999999999999999875
No 193
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.72 E-value=26 Score=39.15 Aligned_cols=42 Identities=29% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (876)
|++++.++.+.-..|++++.+|+++|.+|..+|+-|.+-+..
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888889999999999999999999999887743
No 194
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=39.34 E-value=3.1e+02 Score=27.54 Aligned_cols=121 Identities=10% Similarity=0.078 Sum_probs=73.4
Q ss_pred hhHHHHHhHhhhhhHHHHHHHH---------HHhhhhhhH-hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 578 GEEELAIQRLEITKNDLRHRIA---------KEARGNAIL-QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (876)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~n~~~-q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~L 647 (876)
..=+.+|.+.++-..+|..+-. .+.....-- -..+..|...+.++-..|.+-+..=+.+|++...++..+
T Consensus 48 ~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~ 127 (250)
T 1quu_A 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETI 127 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899998888876532 121111100 034666777788777778887777777777777666433
Q ss_pred HHh--------------hcCCCCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 002819 648 EVG--------------LSMSSGQFS--SSRGMDSKTRAELEEIALAEADVARLKQKVAEL---HHQLNQ 698 (876)
Q Consensus 648 e~a--------------l~~~~~~~~--~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l---~~~l~~ 698 (876)
+.+ |...-..+. ....-+..++.||..+..++.++..++.++..+ +.++.+
T Consensus 128 d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~ 197 (250)
T 1quu_A 128 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEK 197 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 111111111 122335589999999999998888888655544 545443
No 195
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=38.71 E-value=1.9e+02 Score=29.00 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002819 675 IALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 675 ia~~E~~v~~Le~~v~~l~~~l 696 (876)
|..|+.+|..|......|+.+|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 196
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=37.73 E-value=1.7e+02 Score=28.22 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=68.6
Q ss_pred HHHHhHhhhhhHHHHHH---HH-HHhhhhhhHh------HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002819 581 ELAIQRLEITKNDLRHR---IA-KEARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE-- 648 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~---~~-~~~~~n~~~q------~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le-- 648 (876)
+.++++-+.-+.+|..+ +. -...|+..++ ..+..|-..+++++.+|.+-...=+.+|+.=..++....
T Consensus 40 e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~d~ 119 (185)
T 3lbx_B 40 ELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDA 119 (185)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566666666666333 31 1112344433 457778888888888887777766666665444432111
Q ss_pred ----HhhcCCCCCC---CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 649 ----VGLSMSSGQF---SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 649 ----~al~~~~~~~---~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
.-|...-..| .++ .-...+.+||.+-..+|.++..-+.+|..|..
T Consensus 120 ~~~~~Wl~~~e~~L~~~~~g-~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~~ 171 (185)
T 3lbx_B 120 SVAEAWLIAQEPYLASGDFG-HTVDSVEKLIKRHEAFEKSTASWAERFAALEK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHCCCCC-SSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHS
T ss_pred HHHHHHHHHhHhhhccCCCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 1111111111 122 23457999999999999999999999999975
No 197
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=37.70 E-value=2e+02 Score=28.32 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=64.0
Q ss_pred HHHHHhHhhhhhHHHHH----HHHH-HhhhhhhH------hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 580 EELAIQRLEITKNDLRH----RIAK-EARGNAIL------QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~----~~~~-~~~~n~~~------q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
=+..+.+.+.-+.+|.. ||.. -.-++.-+ -..+..|...++.+-..|.+-+..=+.+|+.-..++....
T Consensus 36 v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~F~~ 115 (218)
T 3edu_A 36 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 115 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888753 2321 00011111 1356677778877777777777777777766555554332
Q ss_pred Hhhc------CCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 649 VGLS------MSSGQFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 649 ~al~------~~~~~~~~~-~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
.+-. .....++.+ ..=+..+++|+.....+|.++..++.+|..|...-.+
T Consensus 116 ~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~ 172 (218)
T 3edu_A 116 TGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATR 172 (218)
T ss_dssp HHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 000112211 2224567888888899999999999999988755443
No 198
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=37.14 E-value=66 Score=22.57 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
-.|-.|+|..|++--.|||+|..|..
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34667888888888888988876643
No 199
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.41 E-value=86 Score=27.47 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
+.|-.+|..++++|+.|++....|+.-.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677778888888888888877543
No 200
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.38 E-value=38 Score=24.72 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 002819 664 MDSKTRAELEEIALAEADVARLKQ 687 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~ 687 (876)
|-.|+.+||.+-.-||.||++|..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345778999999999999999875
No 201
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.70 E-value=2.4e+02 Score=25.19 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 002819 613 ERRKQALHERRLALEQDVSRLQEQLQ-AERDLRA 645 (876)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~-~E~~l~~ 645 (876)
+...+....++..+|+||..|+++++ -|-+|-.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999886 3444443
No 202
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=35.44 E-value=41 Score=24.51 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQK 688 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~ 688 (876)
-.|+.+||.+-..||.+|++|..-
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 356779999999999999998753
No 203
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.14 E-value=2.4e+02 Score=25.11 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 615 RKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 615 rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
+-..++..+..|+.++..|++.|.
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677777777777664
No 204
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.00 E-value=50 Score=28.45 Aligned_cols=49 Identities=35% Similarity=0.499 Sum_probs=30.6
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.|...|+||=.|+.+=.-++.+||--++..+ +-|..|++-|..|.+.|.
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~----~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVK----QAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4778899999999888888999998877544 344455555555555443
No 205
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=33.95 E-value=2e+02 Score=26.86 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=46.1
Q ss_pred EEEEEEEeCCeeeEecCCCCCCC-CCCcceeeeeCcEEeCCCcceeeccCCceEEEEec-C--CCCCceEEEEeCCHHHH
Q 002819 38 KKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-D--GRDGRAFTLKAETSEDL 113 (876)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p-~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~-~--~~~gRty~LqAdSeeE~ 113 (876)
..|-++++|..+.+--.+....- ..+.+-+ +.+..+..+......+.-|.|.. . ....+.|.|.|.+.+|+
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS-----~H~s~Vv~~K~s~k~P~~FKivV~k~~~~e~KrYdfEA~s~~ea 102 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKS-----LHISQVVLVKKSKRVPEHFKIFVRREGQDDIKRYYFEAVSGQEC 102 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEE-----EEGGGEEEEEECSSCTTEEEEEECCTTCSSCEEEEEEESSHHHH
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEE-----EEEeeEEEEEecccCCCcEEEEEEccCCCCcceeEEEeCCHHHH
Confidence 55777788887777654332110 0111222 23332222212222223444433 3 23358999999999999
Q ss_pred HHHHHHHHHHHh
Q 002819 114 YEWKTALELALA 125 (876)
Q Consensus 114 ~eWI~AIr~al~ 125 (876)
.+=|..|+..++
T Consensus 103 ~EIV~~ik~~~~ 114 (121)
T 3ulb_A 103 TEIVTRLQNLLS 114 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 206
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.03 E-value=1.7e+02 Score=25.74 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM-----SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~-----~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
.++.+...|.+....|+.++++=...-..|+..=.- .-|.+-+....+.-...|=..+..++.+|..|+.++..+
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666665544444445433211 122222222333333344445566666666666666666
Q ss_pred HHHHHHHHh
Q 002819 693 HHQLNQQRQ 701 (876)
Q Consensus 693 ~~~l~~~~~ 701 (876)
..++..-+.
T Consensus 92 ~~~l~~lk~ 100 (107)
T 1fxk_A 92 MKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 207
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.78 E-value=1e+02 Score=35.29 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=24.3
Q ss_pred hHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 667 KTRAE----LEE-IALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 667 ~~~~l----l~e-ia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
.+.+| ++| ...|-++|..||+++..+..+|.+.--
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677 888 888888888888888888888876544
No 208
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.76 E-value=2.5e+02 Score=26.65 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002819 670 AELEEIALAEADVARLKQKV 689 (876)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v 689 (876)
+|-.+|..|+..+.+||.++
T Consensus 114 ~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 114 ELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 209
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.63 E-value=1.9e+02 Score=32.38 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred hHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 002819 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS-MSSGQFSSS-RGMDSKTRAELEEIALAEADVARLK 686 (876)
Q Consensus 609 q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~-~~~~~~~~~-~~~p~~~~~ll~eia~~E~~v~~Le 686 (876)
...+++.+..+.+.+.+||+.|.++|+.++++..--..+...++ ........+ ..+-.-.+..=+..+-+|.+..+.+
T Consensus 355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (487)
T 3oja_A 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI 434 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcch
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002819 687 QKVAELHHQLNQQRQHH 703 (876)
Q Consensus 687 ~~v~~l~~~l~~~~~~~ 703 (876)
+.+...+.++.+.+.++
T Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (487)
T 3oja_A 435 RDWDMYQHKETQLAEEN 451 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHh
No 210
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.61 E-value=23 Score=24.00 Aligned_cols=20 Identities=45% Similarity=0.506 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002819 674 EIALAEADVARLKQKVAELH 693 (876)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~ 693 (876)
|-..||..|+-|+|++.+|+
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 33445555555555555543
No 211
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=30.57 E-value=1.1e+02 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=29.3
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHh
Q 002819 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR 615 (876)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~r 615 (876)
+=|.-|+|||.+=.-||.|.|+=.-+...-|..|.+|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999997666666666666544
No 212
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.96 E-value=1.5e+02 Score=27.30 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhh---hhhhHhHhHHHhHHH----------HHHHHHHHHHHHHHHHHHHH
Q 002819 592 NDLRHRIAKEAR---GNAILQASLERRKQA----------LHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 592 ~~~~~~~~~~~~---~n~~~q~~~~~rk~~----------~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.+|+..|++--+ ...+|++.++-=+.. +++...+|+++|..||.|++
T Consensus 48 delk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 48 DKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344445543222 345666666554443 34455567777777776654
No 213
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.91 E-value=1.8e+02 Score=25.91 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 618 ALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
.++.+...|.+....|+.++++=...-..|+
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554333333444
No 214
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.75 E-value=1e+02 Score=25.12 Aligned_cols=51 Identities=27% Similarity=0.302 Sum_probs=0.0
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v 689 (876)
.++-+=++.-.++-..||.+|..|..+-. +|-.+|..|+.+|..|.+.+
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~-------------------------------~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNS-------------------------------ELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 002819 690 AE 691 (876)
Q Consensus 690 ~~ 691 (876)
..
T Consensus 60 ~~ 61 (62)
T 1jnm_A 60 MN 61 (62)
T ss_dssp --
T ss_pred Hh
No 215
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.68 E-value=1.6e+02 Score=22.47 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002819 671 ELEEIALAEADVARLK 686 (876)
Q Consensus 671 ll~eia~~E~~v~~Le 686 (876)
|-.|||-||.+|+.-|
T Consensus 36 lrdeiarlenevashe 51 (52)
T 3he5_B 36 LRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4456666666665443
No 216
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.65 E-value=1.9e+02 Score=25.13 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKVAEL 692 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (876)
+.++.+++.+++.++.++..++..=.+|
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999988888776665
No 217
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=29.36 E-value=1.2e+02 Score=26.33 Aligned_cols=65 Identities=25% Similarity=0.234 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 627 EQDVSRLQEQLQAERDLRAALEVGLSMS-SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 627 eqeV~~Lq~qL~~E~~l~~~Le~al~~~-~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
++-+..|++||.-|..++.=.|+.+..- .| +.+-+.||+|--.+=.| =..||.-||.|+.+-.+.
T Consensus 7 ~~rl~~L~kqL~IElkVK~GAENmi~~y~~g--------~~~drKlLaeAQqmL~D---Sk~KIe~lRmqI~k~~q~ 72 (81)
T 1urf_A 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSNG--------STKDRKLLLTAQQMLQD---SKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999988532 22 33457788775544333 567888899998774443
No 218
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=28.98 E-value=25 Score=25.64 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=13.7
Q ss_pred HHHHHHhhhhhhHhH
Q 002819 596 HRIAKEARGNAILQA 610 (876)
Q Consensus 596 ~~~~~~~~~n~~~q~ 610 (876)
.||+.|.-+|+.||-
T Consensus 17 ~~IgDEld~N~ELQr 31 (34)
T 3pk1_B 17 KRIGDELDSNMELQR 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHH
Confidence 589999999999995
No 219
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.30 E-value=2.7e+02 Score=31.90 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
..+.+|++|+..|-++|..||+++.++..+|...--
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999998888876544
No 220
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=28.24 E-value=73 Score=38.76 Aligned_cols=37 Identities=3% Similarity=-0.103 Sum_probs=28.1
Q ss_pred eEEEEecCCCC--CceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 89 ~~fvIt~~~~~--gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
.||.|...... -+.+.|.|.+.++++.|+..|+..+.
T Consensus 97 ~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~ 135 (799)
T 2zkm_X 97 KTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVK 135 (799)
T ss_dssp TEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 36766543321 23689999999999999999999886
No 221
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.92 E-value=74 Score=29.65 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
-+++|+...-.|.||..|..++.+|+..|..+..
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~ 39 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNTTA 39 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999965543
No 222
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.64 E-value=3.2e+02 Score=24.19 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=25.1
Q ss_pred hhhhhHhHh-HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 603 RGNAILQAS-LERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 603 ~~n~~~q~~-~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
+.||+=.+. ++...+...++...+|++|.-|+++++
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444443322 344566778888899999999999886
No 223
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.11 E-value=2e+02 Score=26.79 Aligned_cols=52 Identities=25% Similarity=0.281 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 002819 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (876)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~ 688 (876)
.|.+|+.+|..+|.. +|.=|..|..+. =...+.++..||+.|+.+|.+|..+
T Consensus 7 ~~K~Eiq~L~drLD~---~~rKlaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDA---IRHQQADLSLVE---------AADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHSCTTT---------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889888875 555566655432 1334456666666666666655543
No 224
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=27.10 E-value=57 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002819 681 DVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 681 ~v~~Le~~v~~l~~~l~~~~~ 701 (876)
+++.||++-.+|+-|||++|-
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl 34 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERL 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888899999886
No 225
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.94 E-value=70 Score=23.20 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQK 688 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~ 688 (876)
-.|+.+||.+=..||.+|++|..-
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 357789999999999999998753
No 226
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=26.85 E-value=1.3e+02 Score=31.22 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=26.9
Q ss_pred HHHhhhhhhHhHh---------HHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHH
Q 002819 599 AKEARGNAILQAS---------LERRKQALHERRLALEQDV-SRLQEQLQAERDL-RAALE 648 (876)
Q Consensus 599 ~~~~~~n~~~q~~---------~~~rk~~~~~~r~~LeqeV-~~Lq~qL~~E~~l-~~~Le 648 (876)
++||+-|+..++. +.++=.+-.+||-.-|.+| ..|.+...+|+.+ +.|++
T Consensus 127 aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e 187 (240)
T 4f61_I 127 AEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777665554 3333334456665555444 4455556666555 44444
No 227
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.84 E-value=60 Score=25.18 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 002819 675 IALAEADVARLKQ 687 (876)
Q Consensus 675 ia~~E~~v~~Le~ 687 (876)
||-||.+|++||.
T Consensus 40 ianlekdianler 52 (56)
T 3he4_A 40 IANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 228
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.43 E-value=75 Score=21.55 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 674 EIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
||..||-+---|||++..|++.+-.
T Consensus 1 eidalefendaleqkiaalkqkias 25 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHHH
Confidence 4567888989999999999987643
No 229
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.37 E-value=70 Score=35.84 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (876)
|..|++.+.++..+++.+++.|++||.+|...|+-|.+.+....|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445566667777777888888888888888888888877744333
No 230
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.32 E-value=97 Score=22.65 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 612 LERRKQALHERRLALEQDVSRLQEQL 637 (876)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (876)
||-.=+.+-.+...|+.||.||++-|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34444556667788999999998866
No 231
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=26.23 E-value=1.8e+02 Score=24.00 Aligned_cols=56 Identities=27% Similarity=0.229 Sum_probs=31.7
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHH---HhHHHHHHHHHHHHHHHHHHHHH
Q 002819 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQ 636 (876)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~---~rk~~~~~~r~~LeqeV~~Lq~q 636 (876)
|-.|--||....+++.-++-..++=+-+...++ +|-..-++.=..||+.|.+|+..
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 556777899999999988754443333333333 22222223333466666666643
No 232
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.21 E-value=92 Score=24.81 Aligned_cols=31 Identities=35% Similarity=0.426 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 672 LEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 672 l~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
|.=-.-+|-.|.+||+.|++|...|..+...
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek 34 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333457889999999999999999988663
No 233
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.15 E-value=93 Score=27.87 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=0.0
Q ss_pred HhHhHHHhHHHHH---HHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALH---ERRLALEQDVSRLQEQLQA 639 (876)
Q Consensus 608 ~q~~~~~rk~~~~---~~r~~LeqeV~~Lq~qL~~ 639 (876)
|.+||++-|..-+ .+-.+|+-||..|..+||+
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 234
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.87 E-value=1.2e+02 Score=30.68 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
+.|-.+|..++++|+.|+++...|+--
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666777776666666543
No 235
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.59 E-value=91 Score=24.92 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
-+..+-+|..|++-|-..|..|.+++.+|+.+|.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778899999999999999999999999988753
No 236
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.28 E-value=1.4e+02 Score=21.03 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 668 TRAELEEIALAEADVARLKQKVAELHH 694 (876)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (876)
.-+|-.|||.|-.||+-|+=++..|++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667777777777777777777765
No 237
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=25.22 E-value=4.3e+02 Score=27.29 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=58.1
Q ss_pred HHHHHhHhhhhhHHHHH-H---HHH-HhhhhhhHh------HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 580 EELAIQRLEITKNDLRH-R---IAK-EARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (876)
Q Consensus 580 ~~~~~~~~~~~~~~~~~-~---~~~-~~~~n~~~q------~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (876)
=+..+.+.+.-+.+|.. + |.. -..++..++ ..+..+...++.+-..|.+-+..-+.+|+....++....
T Consensus 145 v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~ 224 (326)
T 3kbt_A 145 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 224 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777654 2 211 011122222 236667778888888888888888888877665555432
Q ss_pred Hh------hcCCCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 649 VG------LSMSSGQFSS-SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 649 ~a------l~~~~~~~~~-~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
.+ |......++. ...=+..++++|.....+|.+|..++.+|..|...
T Consensus 225 ~~~e~~~Wl~ek~~~L~~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~ 278 (326)
T 3kbt_A 225 TGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDV 278 (326)
T ss_dssp HHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0000011111 12223467899999999999999999999988654
No 238
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.17 E-value=1.4e+02 Score=26.00 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002819 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (876)
Q Consensus 664 ~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (876)
|-.|++..+..|++|.-+|.-|+++-..|..+..+-+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44688999999999999999999998887665555333
No 239
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.84 E-value=66 Score=28.11 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (876)
..|.-+-| .|+..||..|..||+++..|..+|..
T Consensus 14 ~KLSykeq---rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 14 SKLSYKLQ---RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp CSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444433 46778899999999999999988853
No 240
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.59 E-value=1e+02 Score=23.57 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.3
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002819 610 ASLERRKQALHERRLALEQDVSRLQEQ 636 (876)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~q 636 (876)
..||.|-+.++.+-.+||+-|.-||..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888889999999888754
No 241
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=24.57 E-value=2.9e+02 Score=27.80 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=28.5
Q ss_pred eEEEEecCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002819 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (876)
Q Consensus 89 ~~fvIt~~~~~gRty~LqAdSeeE~~eWI~AIr~al~ 125 (876)
..|-+... .+..+.|.|.|..+...|++-|+-.+.
T Consensus 116 laFSii~~--~~~~L~fvA~s~~~~~~W~DGL~~Llg 150 (203)
T 3a98_B 116 LAFSILYD--SNCQLNFIAPDKHEYCIWTDGLNALLG 150 (203)
T ss_dssp GEEEEEET--TTEEEEEECSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEecC--CCceEEEecCCHHHHHHHHHHHHHHhc
Confidence 36666543 347999999999999999999998876
No 242
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.40 E-value=2e+02 Score=32.14 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002819 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (876)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (876)
|..|+.|+.+|++++++-..- .+++.+|++.+++.+...|. ++.+|+.+-++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~------------------------~~~~~~~~~~~~~~l~~~~~----~rr~l~n~~~~ 56 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRC------------------------NEQQAAELETCKEQLFQSNM----ERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 678999999998887654332 34556666666666555443 44445555454
Q ss_pred hcCCc
Q 002819 703 HYGSL 707 (876)
Q Consensus 703 ~~~s~ 707 (876)
-.|..
T Consensus 57 l~gnI 61 (412)
T 3u06_A 57 LRDNI 61 (412)
T ss_dssp HTCSE
T ss_pred hCCCE
Confidence 44444
No 243
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.15 E-value=1.5e+02 Score=24.22 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002819 617 QALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
.+-..||.-=.+....|+.+.+
T Consensus 12 ~AA~R~R~KKk~~~~~le~~~~ 33 (63)
T 1ci6_A 12 TAATRYRQKKRAEQEALTGECK 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566555566665555543
No 244
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.86 E-value=69 Score=24.71 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002819 676 ALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 676 a~~E~~v~~Le~~v~~l~~~l~ 697 (876)
..||.-|..||.|+++|+.+|.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998874
No 245
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.83 E-value=1.8e+02 Score=29.72 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=31.0
Q ss_pred HhhhhhHHHHHHH-----HHHhhhhhhHh---HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 586 RLEITKNDLRHRI-----AKEARGNAILQ---ASLERRKQALHERRLALEQDVSRLQEQLQAE 640 (876)
Q Consensus 586 ~~~~~~~~~~~~~-----~~~~~~n~~~q---~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E 640 (876)
+|+.+-++|+.++ +|+..+++.++ .=|+..|...++.+..|.+++.++++.+..|
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~~~~ 212 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIKQE 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3344444444444 44444444443 3456666667777777777777777766554
No 246
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.47 E-value=1.2e+02 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 666 SKTRAELEEIALAEADVARLKQKVAELHHQL 696 (876)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (876)
.++..|=.+...|..+|..|+.++..|+..|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 247
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.20 E-value=3.1e+02 Score=25.39 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=18.8
Q ss_pred HhHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (876)
|.++|++-|..-+.+-.+|+-|+..|.++||
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667766665555555556666666665554
No 248
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.17 E-value=4.5e+02 Score=24.35 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=16.7
Q ss_pred HhHhHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 002819 608 LQASLERRKQALHERR---LALEQDVSRLQEQLQAERD 642 (876)
Q Consensus 608 ~q~~~~~rk~~~~~~r---~~LeqeV~~Lq~qL~~E~~ 642 (876)
||-.|.+-.+.|++.- ..=-+-|..|+.-|.+|+.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~eka 67 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 67 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433 2234556666666665554
No 249
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=22.72 E-value=4.4e+02 Score=28.82 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=28.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (876)
Q Consensus 662 ~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (876)
..+++.++++|.+|.. .+++|||-+.+||+.
T Consensus 316 ~~~dp~~~~i~~~i~~---~l~~~e~~~~~l~~~ 346 (365)
T 3fse_A 316 MYTDPIATAIFKEIYK---DLVKYEQRLVSLYRT 346 (365)
T ss_dssp TCSCHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 6789999999999977 999999999998764
No 250
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=21.89 E-value=5.8e+02 Score=25.12 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=48.9
Q ss_pred cEEEEEEEe-----CCeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeCCHH
Q 002819 37 WKKRWFILT-----RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSE 111 (876)
Q Consensus 37 WKKRWFVL~-----~~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAdSee 111 (876)
=|.||.+|. .+.+..||...... +.+.+- ..=+|.....+........-|.++. ++.|+.+|.+..
T Consensus 64 KK~R~L~lav~~~~sgrV~lhK~K~N~n----gsfsiG-kTW~L~ELk~Ie~~~~~~~gF~ltl----~K~Y~W~a~s~~ 134 (171)
T 3hie_A 64 KKKRLLILSAKPNNAKLIQIHKARENSD----GSFQIG-RTWQLTELVRVEKDLEISEGFILTM----SKKYYWETNSAK 134 (171)
T ss_dssp EEEEEEEEEECTTCTTCEEEEEEEECTT----SCEEEE-EEEEGGGCCEEEECSSCTTEEEEES----SSEEEEECSSHH
T ss_pred ccceEEEEEEecCCCceEEEEEEEECCC----CcEEee-eeeecccceeeeccCCCCCcEEEEe----CCeEEEecCCHH
Confidence 477887763 34567777665442 222110 0122222222222122345688876 399999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 002819 112 DLYEWKTALELALAQ 126 (876)
Q Consensus 112 E~~eWI~AIr~al~~ 126 (876)
|+..++..|-+...+
T Consensus 135 Er~~FI~sL~K~y~k 149 (171)
T 3hie_A 135 ERTVFIKSLITLYIQ 149 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888763
No 251
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.52 E-value=1.9e+02 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (876)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (876)
+.|-.+|..++++|+.|++....|+--..
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777778888877777765333
No 252
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.52 E-value=3.3e+02 Score=23.73 Aligned_cols=63 Identities=25% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhHhHhHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 002819 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ-AERDLRAALE 648 (876)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~-~E~~l~~~Le 648 (876)
.-|+.+=.|=.-||-.|.+-=-.|+.|... .+.++..|.+|.++..+|+.+.. -+..|+..|-
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e----~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQE----VQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555444456555444 44667788889999998876654 3445555553
No 253
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.33 E-value=1e+02 Score=22.49 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002819 666 SKTRAELEEIALAEADVARLKQ 687 (876)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~ 687 (876)
.++.+||.+=..||.+|.+|..
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 4667899999999999988865
No 254
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.23 E-value=1e+02 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQK 688 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~ 688 (876)
-.|+.+||.+=..||.+|++|..-
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHH
Confidence 357778999999999999998753
No 255
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.11 E-value=3.3e+02 Score=23.14 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 002819 632 RLQEQLQAERDLR 644 (876)
Q Consensus 632 ~Lq~qL~~E~~l~ 644 (876)
.|.++|+.|+-|.
T Consensus 43 ~lek~L~~E~~LK 55 (71)
T 1s1c_X 43 AFEKNINTERTLK 55 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776554
No 256
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.04 E-value=2.5e+02 Score=28.18 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002819 623 RLALEQDVSRLQEQLQ 638 (876)
Q Consensus 623 r~~LeqeV~~Lq~qL~ 638 (876)
-..|.+|+..|-.||+
T Consensus 22 V~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 22 VANLVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 257
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.84 E-value=1.2e+02 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Q 002819 665 DSKTRAELEEIALAEADVARLKQKV 689 (876)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v 689 (876)
-.++.+||.+=.-||.+|.+|..-+
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4577799999999999999987644
No 258
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.43 E-value=3.6e+02 Score=29.63 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002819 626 LEQDVSRLQEQLQAERDLRAALEVGLSMS-S-GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (876)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~-~-~~~~~~~~~p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (876)
-+++|..|+..++.++.- .+.. . +.++ -....++++.+|..+.-..++|+.++.-|+.-|.+-
T Consensus 328 k~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 328 RQEMVTQLQQELRNEEEN-------THPRERVQLLG----KRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH-------SCTTCGGGGHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhc-------CCcchHHHHHh----HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 457888888888887431 1100 0 0010 112246778888888888888888888887777643
No 259
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=20.18 E-value=4.6e+02 Score=28.22 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=50.2
Q ss_pred CCCcEEEEEEEeC-----CeeeEecCCCCCCCCCCcceeeeeCcEEeCCCcceeeccCCceEEEEecCCCCCceEEEEeC
Q 002819 34 WKSWKKRWFILTR-----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAE 108 (876)
Q Consensus 34 ~k~WKKRWFVL~~-----~~L~YYKd~~~~~p~~~~ev~i~Lg~I~L~~~~sv~~~~~Kk~~fvIt~~~~~gRty~LqAd 108 (876)
.+.-|.||.+|.- +.+..||...... +.+.+- ..-+|.....+........-|+|+. ++.|+.+|.
T Consensus 131 ~kkKK~R~LcLaV~~d~sGRV~LhKaKeN~n----gsFsIG-KTW~L~ELk~Id~~~~~~~gF~LTl----~K~YyW~A~ 201 (320)
T 3a58_A 131 LENKKKRLLILSAKPNNAKLIQIHKARENSD----GSFQIG-RTWQLTELVRVEKDLEISEGFILTM----SKKYYWETN 201 (320)
T ss_dssp GGGEEEEEEEEEECSSCTTCEEEEEEEECGG----GCEEEE-EEEEGGGCCEEEECSSCTTEEEEES----SSEEEEEES
T ss_pred ccccCceEEEEEEecCCCceEEEEEEEecCC----CceEec-ceechhhhhhhhcccCCCCceEEEe----CCceEEecC
Confidence 3456889987743 3578887655441 222110 0122222222211013335688886 399999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 002819 109 TSEDLYEWKTALELALA 125 (876)
Q Consensus 109 SeeE~~eWI~AIr~al~ 125 (876)
+..|+..||..|-+...
T Consensus 202 s~kER~~FI~sLvKiy~ 218 (320)
T 3a58_A 202 SAKERTVFIKSLITLYI 218 (320)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988765
Done!