BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002820
(876 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/738 (60%), Positives = 552/738 (74%), Gaps = 1/738 (0%)
Query: 122 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFK 181
KF++L L D R +LP+SIR+LLE+AIRNCD F VKK+D+E I+ W + K +E+PFK
Sbjct: 19 KFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFK 78
Query: 182 PARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAV 241
PARV+LQDFTGVPAVVD A MRDA+ KLG D KINP+ P DLVIDHS+QVD R +++
Sbjct: 79 PARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSL 138
Query: 242 KANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD 301
+ N +LEF+RN+ERF FLKWGS AFHNM ++PPGSGI+HQVNLEYL RVVF+ +G YPD
Sbjct: 139 QKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPD 198
Query: 302 SVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 361
S+VGTDSHTTMID MLGQP+SMVLP V+G++L GK H VT+TD
Sbjct: 199 SLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 258
Query: 362 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421
+VLT+T+ LR+ GVVGKFVEF G G+ +LS+ADRATIANM PEYGAT FFPVD V++ Y
Sbjct: 259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITY 318
Query: 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDR 481
L TGR +E + ++ YL+A MF D+N+P Q+ ++ +EL+L V PC SGPKRP D+
Sbjct: 319 LVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDK 378
Query: 482 VPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTN 541
V + +MK D+ SCL K GFKGF V E F + L HGSVVIAAITSCTN
Sbjct: 379 VAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTN 438
Query: 542 TSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 601
TSNPSVMLGAGL+AKKA + GL V P++KTSL+PGSGVVT YL +SG+ YL++ GF +V
Sbjct: 439 TSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVV 498
Query: 602 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661
GYGC TCIGNSG L E V IT D+VA VLSGNRNFEGRVHP TRANYLASPPLV+A
Sbjct: 499 GYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558
Query: 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKG 721
YA+AGT+ IDF+KEP+G G+ V+ KDIWPT +EI V + V+P MFK Y+ I
Sbjct: 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETV 618
Query: 722 NPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDH 781
N +WN L+ P+ KL+ W+ STYI PP+F+++T+D + DAY LLN GDS+TTDH
Sbjct: 619 NESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDH 678
Query: 782 ISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 841
ISPAG+I ++SP A+YL RG+ R+FNSYGSRRGND VMARGTFANIRL+N+ LN +
Sbjct: 679 ISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQ-A 737
Query: 842 PKTVHVPTGEKLSVFDAA 859
P+T+H+P+GE L VFDAA
Sbjct: 738 PQTIHLPSGEILDVFDAA 755
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/744 (59%), Positives = 554/744 (74%), Gaps = 1/744 (0%)
Query: 122 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFK 181
KF++L L+ R +LP+SIR+LLE+A+RNCD F VKKED+E I++W + +E+PFK
Sbjct: 39 KFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDIENILNWNVTQHMNIEVPFK 98
Query: 182 PARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAV 241
PARV+LQDFTGVP+VVD A MRDA+ KLG D KINP+ PVDLVIDHS+QVD R +++
Sbjct: 99 PARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPVDLVIDHSIQVDFNRRADSL 158
Query: 242 KANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD 301
+ N +LEF+RN+ERF FLKWGS AF NM ++PPGSGI+HQVNLEYL RVVF+ +G YPD
Sbjct: 159 QKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPD 218
Query: 302 SVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 361
S+VGTDSHTTMID MLGQP+SMVLP V+G++L GK H VT+TD
Sbjct: 219 SLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 278
Query: 362 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421
+VLT+T+ LR+ GVVGKFVEF G G+ +LS+ADRATIANM PEYGAT FFPVD V+++Y
Sbjct: 279 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIKY 338
Query: 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDR 481
L TGR + V + YL+A MF DY++P Q+ ++ +EL+L V PC SGPKRP D+
Sbjct: 339 LVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDK 398
Query: 482 VPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTN 541
V + +MK D+ SCL K GFKGF V + F ++ L HGSVVIAAITS TN
Sbjct: 399 VAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTN 458
Query: 542 TSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 601
TSNPSVMLGAGL+AKKA + GL VKP+VKTSL+PGSGVVT YL +SG+ YL++ GF +V
Sbjct: 459 TSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVV 518
Query: 602 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661
GYG TCIGNSG L E V IT D+VA VLSGNRNFEGRVHP TRANYLASPPLV+A
Sbjct: 519 GYGSMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 578
Query: 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKG 721
YA+AGT+ IDF+KEP+GT G+ V+ +DIWPT EEI V + V+P MF Y+ I
Sbjct: 579 YAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETV 638
Query: 722 NPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDH 781
N +WN L+ P+ KLY W+P STYI PP+F+++T+D + DAY LLN GDS+TTDH
Sbjct: 639 NASWNALAAPSDKLYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDH 698
Query: 782 ISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 841
ISPAG+I ++SP A+YL RG+ R+FNSYGSRRGND +MARGTFANIRL+N+ LN +
Sbjct: 699 ISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQ-A 757
Query: 842 PKTVHVPTGEKLSVFDAAMVKIQE 865
P+T+H+P+GE L VFDAA QE
Sbjct: 758 PQTIHLPSGETLDVFDAAERYQQE 781
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 562 KGKCTTDHISAAG 574
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 562 KGKCTTDHISAAG 574
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 63 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 111
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 112 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 159
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 160 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 216
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 217 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 276
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 277 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 328
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 329 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 357
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 358 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 414
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 415 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 464
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 465 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 514
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 515 TYQHPPKDSSGQRVAVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 560
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 561 KGKCTTDHISAAG 573
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 159 bits (401), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 562 KGKCTTDHISAAG 574
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 562 KGKCTTDHISAAG 574
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 63 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 111
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 112 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 159
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 160 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 216
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 217 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 276
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 277 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 328
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 329 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 357
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 358 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 414
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 415 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 464
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 465 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 514
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 515 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 560
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 561 KGKCTTDHISAAG 573
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 63 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 111
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 112 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 159
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 160 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 216
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 217 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 276
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 277 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 328
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 329 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 357
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 358 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 414
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 415 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 464
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 465 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 514
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 515 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 560
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 561 KGKCTTDHISAAG 573
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 172/613 (28%), Positives = 261/613 (42%), Gaps = 108/613 (17%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAG 786
TTDHIS AG
Sbjct: 562 KGKCTTDHISAAG 574
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 136/385 (35%), Gaps = 98/385 (25%)
Query: 274 PGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXM 332
PG G++H +L R ML PD+V G DSHT
Sbjct: 474 PGDGVIHS----WLNR-------MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 333 LGQPMSMVLPGVVGFKLSGKLHNGVTATDLV------------LTVTQMLRKHGVVGKFV 380
+ M + +P V + GK+ G+T DLV LTV + +K+ G+ +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 381 EFHGDGMGELSLADRATIANMSPEYGAT-----------MGFFPVDHVTLQYLKLTGRSD 429
E +G+ +L + + + S E A + + + V L+++ G D
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 430 -----ETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVP 483
+ +E +L ++ + + V ++++LAD+ EP + P P D P
Sbjct: 638 RRTLERRIQGMEKWLANPELLEADADAEYAAV----IDIDLADIKEPILCAPNDPDDARP 693
Query: 484 LKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTS 543
L AV E ++V I SC
Sbjct: 694 LS-------------------AVQGEKIDEVF--------------------IGSCMTNI 714
Query: 544 NPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603
G L A K L + WV AP + + L + G + G I
Sbjct: 715 GHFRAAGKLLDAHKG---QLPTRLWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIP 767
Query: 604 GCTTCIGNSGDLDE--SVASTITDN 626
GC+ C+GN + + +V ST T N
Sbjct: 768 GCSLCMGNQARVADGATVVSTSTRN 792
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 538 SCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLA 574
S ++ SNP V L AGL+ A L + PW +S+A
Sbjct: 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 567 PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG-NSGDLDESVAST 622
P+ ++ SG + +GL +YL+ GFH+ Y +G +SG +DE +T
Sbjct: 32 PFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTT 88
>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain
Length = 369
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 112 LPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLE-SAIRNCDN--FQVKKEDVEKIID 167
LP P G Y+L + N+ + KLP++I L++ S R+ D + KK+D+ +ID
Sbjct: 53 LPDPNDGSL---YTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVID 108
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 436 EGYLRANKMFVDYNEPQQERVYSSYLELNLADVEP----------CISGPKRPHDRVPLK 485
EG++ AN + +D + Q L L+L+D+ P SGP +PL
Sbjct: 225 EGWVLANALLIDLHFAQTNPDRKQKLILDLSDIRPYGAEIHGFGGTASGP------MPLI 278
Query: 486 EMKADWHSCLDNKVGFKGFAV 506
M D + L+NK G + AV
Sbjct: 279 SMLLDVNEVLNNKAGGRLTAV 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,848,371
Number of Sequences: 62578
Number of extensions: 1130770
Number of successful extensions: 2617
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2559
Number of HSP's gapped (non-prelim): 35
length of query: 876
length of database: 14,973,337
effective HSP length: 107
effective length of query: 769
effective length of database: 8,277,491
effective search space: 6365390579
effective search space used: 6365390579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)