Query 002820
Match_columns 876
No_of_seqs 316 out of 2106
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 11:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 6E-263 1E-267 2133.4 49.1 770 101-874 5-774 (892)
2 PLN00070 aconitate hydratase 100.0 9E-249 2E-253 2155.0 67.4 778 98-875 38-815 (936)
3 PTZ00092 aconitate hydratase-l 100.0 1E-245 3E-250 2126.0 66.4 776 91-875 4-779 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 4E-244 1E-248 2108.9 64.1 748 120-875 2-756 (876)
5 PRK12881 acnA aconitate hydrat 100.0 1E-242 3E-247 2102.4 64.9 758 102-875 3-767 (889)
6 PRK09277 aconitate hydratase; 100.0 4E-241 9E-246 2085.8 66.8 757 102-875 4-766 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 4E-239 9E-244 2060.6 62.6 719 120-875 12-739 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 3E-234 6E-239 1998.3 54.2 734 109-875 6-740 (861)
9 TIGR01340 aconitase_mito aconi 100.0 4E-155 8E-160 1355.7 53.3 590 158-875 19-630 (745)
10 PRK07229 aconitate hydratase; 100.0 6E-136 1E-140 1186.5 44.7 509 159-836 3-516 (646)
11 TIGR01342 acon_putative aconit 100.0 4E-133 9E-138 1161.9 45.0 529 160-875 1-537 (658)
12 cd01586 AcnA_IRP Aconitase A c 100.0 3E-131 6E-136 1084.5 37.1 400 184-668 1-404 (404)
13 TIGR00170 leuC 3-isopropylmala 100.0 2E-121 4E-126 1029.1 40.8 451 159-668 3-459 (465)
14 KOG0453 Aconitase/homoaconitas 100.0 9E-122 2E-126 1021.9 36.9 577 175-875 82-660 (778)
15 PRK12466 isopropylmalate isome 100.0 7E-121 2E-125 1026.0 42.8 452 158-668 3-461 (471)
16 PF00330 Aconitase: Aconitase 100.0 2E-121 3E-126 1033.1 34.4 456 160-666 1-465 (465)
17 PRK05478 isopropylmalate isome 100.0 2E-120 5E-125 1021.9 41.7 451 159-668 3-459 (466)
18 cd01584 AcnA_Mitochondrial Aco 100.0 6E-120 1E-124 1002.7 39.1 409 184-668 1-412 (412)
19 PRK11413 putative hydratase; P 100.0 1E-116 2E-121 1029.1 40.3 524 158-806 34-570 (751)
20 cd01583 IPMI 3-isopropylmalate 100.0 2E-115 5E-120 960.4 38.6 380 184-668 1-382 (382)
21 TIGR00139 h_aconitase homoacon 100.0 5E-114 1E-118 1002.0 43.3 428 159-669 2-453 (712)
22 TIGR01343 hacA_fam homoaconita 100.0 5E-114 1E-118 955.7 40.4 404 160-668 1-408 (412)
23 cd01585 AcnA_Bact Aconitase ca 100.0 3E-114 6E-119 949.5 37.5 379 183-668 1-380 (380)
24 PRK00402 3-isopropylmalate deh 100.0 2E-113 4E-118 952.4 40.6 405 159-668 3-411 (418)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 2E-113 4E-118 951.1 40.1 404 159-668 1-407 (412)
26 TIGR02083 LEU2 3-isopropylmala 100.0 3E-112 7E-117 941.0 41.2 408 159-668 1-413 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 5E-109 1E-113 894.1 36.0 409 159-668 3-416 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 2E-105 4E-110 890.6 37.9 402 162-668 2-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 1E-104 3E-109 867.2 34.7 360 185-668 2-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 2E-100 3E-105 847.7 37.8 388 184-668 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 3.5E-98 8E-103 873.9 40.8 423 157-707 369-824 (835)
32 TIGR00117 acnB aconitate hydra 100.0 5.8E-97 1E-101 861.4 42.8 421 157-706 370-823 (844)
33 PLN00094 aconitate hydratase 2 100.0 1.1E-94 2.3E-99 840.6 40.4 420 157-704 442-895 (938)
34 COG1049 AcnB Aconitase B [Ener 100.0 1.3E-52 2.8E-57 468.0 22.4 418 152-704 370-823 (852)
35 cd01580 AcnA_IRP_Swivel Aconit 100.0 6.3E-47 1.4E-51 373.0 9.1 104 772-875 1-104 (171)
36 KOG0454 3-isopropylmalate dehy 99.9 7.1E-25 1.5E-29 240.1 4.6 419 159-667 67-498 (502)
37 KOG0454 3-isopropylmalate dehy 99.9 4E-22 8.7E-27 218.6 8.5 201 440-668 16-219 (502)
38 cd01578 AcnA_Mitochon_Swivel M 99.4 4.2E-14 9.1E-19 139.0 3.4 77 772-875 1-77 (149)
39 PF00694 Aconitase_C: Aconitas 99.0 1.3E-10 2.7E-15 113.0 0.6 79 796-874 3-81 (131)
40 PF04412 DUF521: Protein of un 95.6 0.031 6.7E-07 64.2 8.1 68 530-605 289-356 (400)
41 cd01579 AcnA_Bact_Swivel Bacte 94.3 0.045 9.7E-07 53.3 3.9 16 772-787 1-16 (121)
42 cd00404 Aconitase_swivel Aconi 93.4 0.029 6.3E-07 51.8 0.8 15 772-786 1-15 (88)
43 COG1679 Predicted aconitase [G 92.6 0.31 6.7E-06 55.4 7.3 68 530-605 289-356 (403)
44 PRK09238 bifunctional aconitat 89.8 0.29 6.3E-06 60.6 4.1 21 766-787 167-187 (835)
45 cd01355 AcnX Putative Aconitas 88.0 1.1 2.5E-05 51.5 6.9 69 531-610 279-347 (389)
46 PRK00439 leuD 3-isopropylmalat 74.2 1.4 3.1E-05 45.0 1.0 15 771-785 5-19 (163)
47 cd01576 AcnB_Swivel Aconitase 70.1 2.3 5E-05 42.3 1.4 29 771-799 1-29 (131)
48 TIGR02084 leud 3-isopropylmala 70.1 1.7 3.8E-05 44.2 0.6 15 771-785 4-18 (156)
49 TIGR02087 LEUD_arch 3-isopropy 60.3 3.5 7.6E-05 42.0 0.6 15 771-785 4-18 (154)
50 PRK14023 homoaconitate hydrata 56.6 4.7 0.0001 41.5 0.8 15 771-785 5-19 (166)
51 PLN00072 3-isopropylmalate iso 53.9 5.4 0.00012 43.5 0.7 22 766-788 70-91 (246)
52 TIGR00829 FRU PTS system, fruc 35.5 23 0.0005 32.5 1.8 31 535-566 2-32 (85)
53 COG1445 FrwB Phosphotransferas 34.9 43 0.00093 33.2 3.5 33 533-566 4-36 (122)
54 TIGR00117 acnB aconitate hydra 31.6 26 0.00056 44.3 1.8 23 763-787 166-188 (844)
55 PRK03600 nrdI ribonucleotide r 30.1 35 0.00075 33.9 2.1 28 613-640 56-86 (134)
56 PF07972 Flavodoxin_NdrI: NrdI 25.7 38 0.00083 33.4 1.5 42 598-640 41-85 (122)
57 cd01577 IPMI_Swivel Aconatase- 25.5 22 0.00049 33.4 -0.1 14 772-785 1-14 (91)
58 PRK10427 putative PTS system f 24.2 61 0.0013 31.5 2.6 33 533-566 5-37 (114)
59 PRK01641 leuD isopropylmalate 20.7 44 0.00096 35.6 0.9 34 767-800 9-44 (200)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-263 Score=2133.37 Aligned_cols=770 Identities=71% Similarity=1.176 Sum_probs=759.4
Q ss_pred cCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceEee
Q 002820 101 AEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPF 180 (876)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI~~ 180 (876)
++++|+...++|+..++ .|+||+|++|+ .++++||||||||||+++||||++.+++++||+||+|+....+..||+|
T Consensus 5 ~~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpF 81 (892)
T KOG0452|consen 5 SENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPF 81 (892)
T ss_pred ccccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecc
Confidence 46899887889998764 79999999998 7899999999999999999999999999999999999988888899999
Q ss_pred ecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhh
Q 002820 181 KPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLK 260 (876)
Q Consensus 181 ~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flk 260 (876)
+|+||++|||||+||+||||+||||++++|+||+||||.||+|||||||+|+|+.++++|+++|+.+||+||+|||.|||
T Consensus 82 kPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlK 161 (892)
T KOG0452|consen 82 KPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLK 161 (892)
T ss_pred ccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeCCCCceeccccccccceeeeccCCccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEee
Q 002820 261 WGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 340 (876)
Q Consensus 261 w~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~ 340 (876)
|+.++|+|+.++|||+||+|||||||||||||++++++|||++|||||||||++|||++||||||||+|++|+|||++|.
T Consensus 162 Wgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmv 241 (892)
T KOG0452|consen 162 WGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMV 241 (892)
T ss_pred hhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHH
Q 002820 341 LPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQ 420 (876)
Q Consensus 341 vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~ 420 (876)
+|+|||++|+|+|+++||++||||+||++||+.|++||||||||+|+++||++||+||+||+||||||+||||+|+.|++
T Consensus 242 lP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~ 321 (892)
T KOG0452|consen 242 LPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQ 321 (892)
T ss_pred cccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhccccc
Q 002820 421 YLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 500 (876)
Q Consensus 421 YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~ 500 (876)
||+.|||+++.++.+|.|+|+.++|++...++.++.|++++++||++|+|+|+||+||||+++|++|+++|+.||.++++
T Consensus 322 yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vg 401 (892)
T KOG0452|consen 322 YLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVG 401 (892)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHH
Q 002820 501 FKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVV 580 (876)
Q Consensus 501 ~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V 580 (876)
||||.++++.+.+.+.+.|+|++++|.||+|+||+||||||||||++|++|+||||||+++||+|+||+||+++|||.+|
T Consensus 402 FKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvV 481 (892)
T KOG0452|consen 402 FKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVV 481 (892)
T ss_pred ccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchh
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHH
Q 002820 581 TKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 660 (876)
Q Consensus 581 ~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVa 660 (876)
+.||.++|++++|+++||.|+||||+|||||+|+|++++..+|++|++|+++|+|||||||||+||.+++||||||+||+
T Consensus 482 t~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvv 561 (892)
T KOG0452|consen 482 TKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVV 561 (892)
T ss_pred hhhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCCccccCC
Q 002820 661 AYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDP 740 (876)
Q Consensus 661 A~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~ 740 (876)
||||||+++|||++||||+++|||.|||+||||+++||+++++++|.|+||++.|+.|..|++.||+|++|++.+|+||+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~ 641 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDP 641 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCccc
Q 002820 741 NSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEV 820 (876)
Q Consensus 741 ~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~ev 820 (876)
+||||++||||++|+++++.+++|++|+||+.||||||||||||||+|.++|||+|||.+||+.|+||||||||||||+|
T Consensus 642 ~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~v 721 (892)
T KOG0452|consen 642 KSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAV 721 (892)
T ss_pred CCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEec
Q 002820 821 MARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLG 874 (876)
Q Consensus 821 M~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~ 874 (876)
|.|||||||||.|+|+ ++.|+.|+|+|+||.++|||||++||++|+|+||+||
T Consensus 722 MaRGTFANIrlvNkl~-~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaG 774 (892)
T KOG0452|consen 722 MARGTFANIRLVNKLL-SKVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAG 774 (892)
T ss_pred hhcccchhhHHHHHHh-cccCCceEecCCCCeecHhhHHHHHHhcCCceEEEec
Confidence 9999999999999999 4999999999999999999999999999999999998
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=8.8e-249 Score=2154.98 Aligned_cols=778 Identities=90% Similarity=1.406 Sum_probs=743.8
Q ss_pred hhccCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcce
Q 002820 98 TMAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVE 177 (876)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~e 177 (876)
+|...++|...+++|+++++++.|+||+|.+|...++++|||||||||||+||||||+.+++++|++|++|......+.|
T Consensus 38 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~e 117 (936)
T PLN00070 38 SMASENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVE 117 (936)
T ss_pred cccccCchhhhhheeeecCCCceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCce
Confidence 34334788544478887731234999999998656899999999999999999999999999999999999876666679
Q ss_pred EeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhh
Q 002820 178 IPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFA 257 (876)
Q Consensus 178 I~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~ 257 (876)
|+|+|+||+||||||+|++||||||||+++++|+||++|||.+|||||||||||+|++++++|+.+|+.+||+||.|||.
T Consensus 118 i~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~ 197 (936)
T PLN00070 118 IPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFA 197 (936)
T ss_pred eccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccceeeCCCCceeccccccccceeeeccCCccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeE
Q 002820 258 FLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 337 (876)
Q Consensus 258 flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~ 337 (876)
||||++++|+||+|||||+|||||||+||||+|||.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+
T Consensus 198 flkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~ 277 (936)
T PLN00070 198 FLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 277 (936)
T ss_pred hhhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999768999999999999999999999999999999999999999999
Q ss_pred EeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChH
Q 002820 338 SMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV 417 (876)
Q Consensus 338 ~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~ 417 (876)
||++||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++
T Consensus 278 ~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~ 357 (936)
T PLN00070 278 SMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 357 (936)
T ss_pred EeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcc
Q 002820 418 TLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDN 497 (876)
Q Consensus 418 T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~ 497 (876)
|++||+.|||++++++++++|+|+|+||+++..+|++|+|++++|||||+|||+||||++|||++||++++++|.+++.+
T Consensus 358 T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~ 437 (936)
T PLN00070 358 TLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDN 437 (936)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcc
Confidence 99999999999999999999999999999766678999999999999999999999999999999999999999998877
Q ss_pred cccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCc
Q 002820 498 KVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGS 577 (876)
Q Consensus 498 ~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS 577 (876)
+++.+|+..+.++.....+++++|++.++++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS 517 (936)
T PLN00070 438 KVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGS 517 (936)
T ss_pred cccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCC
Confidence 65555554433333333456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHH
Q 002820 578 GVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 657 (876)
Q Consensus 578 ~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~ 657 (876)
++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+|++++++|+|+||||+|||||.+++||||||+
T Consensus 518 ~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~ 597 (936)
T PLN00070 518 GVVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 597 (936)
T ss_pred HHHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCCccc
Q 002820 658 LVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYS 737 (876)
Q Consensus 658 lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~ 737 (876)
+||||||+|+|+|||++||||+++||++|||+||||+.+||++++++.++|++|.+.|++++++++.|++|++|++.+|+
T Consensus 598 lVaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~ 677 (936)
T PLN00070 598 LVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYS 677 (936)
T ss_pred HHHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCC
Q 002820 738 WDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGN 817 (876)
Q Consensus 738 Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN 817 (876)
||++||||++||||++++.+++++.+|++||||++||||||||||||||+|+++||||+||++|||+++|||||||||||
T Consensus 678 wd~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN 757 (936)
T PLN00070 678 WDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGN 757 (936)
T ss_pred CCCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCc
Confidence 99999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 818 DEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 818 ~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
||||+||||+|||++|+|++|++||+|+|+|+||+|+||||||+||++|+|+||+||-
T Consensus 758 ~evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~ 815 (936)
T PLN00070 758 DEIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGA 815 (936)
T ss_pred chhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccC
Confidence 9999999999999999999999999999999999999999999999999999999984
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.2e-245 Score=2125.97 Aligned_cols=776 Identities=68% Similarity=1.122 Sum_probs=740.3
Q ss_pred HHHHHhhhhccCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhccc
Q 002820 91 RLERAFATMAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWEN 170 (876)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~ 170 (876)
.|.|.+|+. .++|....++|+ ++ +.|+||+|.+|...++++|||||||||||+||||||..++++++++|++|..
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~ 78 (898)
T PTZ00092 4 QQLRMSSSR--PNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78 (898)
T ss_pred eehhhcccc--cCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcc
Confidence 355666663 368854336787 54 4799999999876689999999999999999999999999999999999987
Q ss_pred CCCCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHH
Q 002820 171 SAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQ 250 (876)
Q Consensus 171 ~~~~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~ 250 (876)
....+.||+|+||||+||||||+|+++|||||||+++++|+||.+|||.+||||+|||+||+++++..+++.+|+.+||+
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccCeEeecCCCCcccCcccceecccChHHHHH
Q 002820 251 RNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA 330 (876)
Q Consensus 251 rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaea 330 (876)
||.|||.||+|++++|+||+|||||+|||||||+||||+|||.++|+++||++|||||||||+||||+|||||||+|+|+
T Consensus 159 rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 159 RNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hhHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCccee
Q 002820 331 AMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMG 410 (876)
Q Consensus 331 amlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g 410 (876)
+|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~g 318 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccc
Q 002820 411 FFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKAD 490 (876)
Q Consensus 411 ~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~ 490 (876)
|||+|++|++||+.|||++++++++|+|.|+|++|++ +|++|+|+++++||||+|||+||||++|||++||++++++
T Consensus 319 ifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 395 (898)
T PTZ00092 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKD 395 (898)
T ss_pred EecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCC
Confidence 9999999999999999999999999999999999973 5779999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee
Q 002820 491 WHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK 570 (876)
Q Consensus 491 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vk 570 (876)
|.+++....+.+++++++++..+.+++.++|.++++.||+|++|||||||||||||+|+||++|||||+++|+||+||||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk 475 (898)
T PTZ00092 396 FTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIK 475 (898)
T ss_pred HHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 98877655444555553333222334456788999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCc
Q 002820 571 TSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRA 650 (876)
Q Consensus 571 t~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~ 650 (876)
++|+|||++|++||+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|+|+||||+|||||.+++
T Consensus 476 ~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~ 555 (898)
T PTZ00092 476 TSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRA 555 (898)
T ss_pred EEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccC
Q 002820 651 NYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSV 730 (876)
Q Consensus 651 ~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~ 730 (876)
||||||+|||||||+|+|+||+++||||+|+||++|||+||||+.+||++++.++++|++|.+.|.+|++++++|++|++
T Consensus 556 ~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~ 635 (898)
T PTZ00092 556 NYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQV 635 (898)
T ss_pred eEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcc
Q 002820 731 PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNS 810 (876)
Q Consensus 731 ~~~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfns 810 (876)
+++++|+||++||||++||||++++.+|+++++|++||||++||||||||||||||+|+++||||+||+++||+|+||||
T Consensus 636 ~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfns 715 (898)
T PTZ00092 636 PKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNT 715 (898)
T ss_pred CCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 811 YGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 811 ygsRrgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
||||||||||||||||+||||+|+|+ |.+||+|+|+|+||+|+||||||+||++|+||||+||-
T Consensus 716 ygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~ 779 (898)
T PTZ00092 716 YGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGK 779 (898)
T ss_pred cccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccC
Confidence 99999999999999999999999999 99999999999999999999999999999999999984
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=4.5e-244 Score=2108.93 Aligned_cols=748 Identities=64% Similarity=1.027 Sum_probs=718.9
Q ss_pred eeeEeecCCCC--CCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHHHH
Q 002820 120 FGKFYSLPALN--DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVV 197 (876)
Q Consensus 120 ~~~~~~l~~~~--~~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI~~~pdrVl~qD~TG~paiv 197 (876)
.|+||+|.+|+ ..++++|||||||||||+||||||+.+++++|++|++|......+.||+|+|+||+||||||+|++|
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 59999999985 3579999999999999999999999999999999999986666677999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCc
Q 002820 198 DLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSG 277 (876)
Q Consensus 198 dlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~G 277 (876)
|||||||+++++|+||.+|||.+||+|+|||+||++.+++.+++.+|+.+||+||.|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccceeeeccC----CccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEeccc
Q 002820 278 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 353 (876)
Q Consensus 278 I~HQV~lE~la~vv~~~~----G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L 353 (876)
||||||+||||+|||.++ |++|||++|||||||||+||||+|||||||+|+|++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHH
Q 002820 354 HNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA 433 (876)
Q Consensus 354 ~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~ 433 (876)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCC-CCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccc
Q 002820 434 MVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQE 512 (876)
Q Consensus 434 ~ve~y~ka~~l~~~~~~~D-~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~ 512 (876)
++++|+|+|+||++ | ++|+|++++|||||+|||+||||++|||++||+++++.|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~~----d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFYD----DSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhcccccC----CCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 99999999999953 4 689999999999999999999999999999999999998887765443344433111
Q ss_pred cceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHH
Q 002820 513 KVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKY 592 (876)
Q Consensus 513 ~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~ 592 (876)
.....++|++..|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112256888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCC
Q 002820 593 LNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDF 672 (876)
Q Consensus 593 L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~ 672 (876)
|+++||+|++||||+||||+|+++++++++|.+|++++++|||+||||+|||||.+++||||||+|||||||+|+|+|||
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCCccccCCCCCcccCCCCCC
Q 002820 673 DKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFK 752 (876)
Q Consensus 673 ~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~Styi~~ppfF~ 752 (876)
++||||+|+||++|||+||||+.+||++++.++++++||++.|.+++.+++.|++|+++++++|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCccccccccccchhhh
Q 002820 753 DMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLV 832 (876)
Q Consensus 753 ~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~ 832 (876)
+|+.+++++++|++||||++||||||||||||||+|+++||||+||++|||+|+|||||||||||||||+||||+||||+
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 833 NKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 833 N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
|+|++|.+||+|+|+|+||.|+||||||+||++|+||||+||-
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~ 756 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGK 756 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccC
Confidence 9999999999999999999999999999999999999999984
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.3e-242 Score=2102.38 Aligned_cols=758 Identities=58% Similarity=0.944 Sum_probs=723.8
Q ss_pred CCchhhhcccccCCCCCceeeEeecCCCCC---CCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceE
Q 002820 102 EHPFKEILTALPKPGGGEFGKFYSLPALND---PRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (876)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI 178 (876)
.++|. ..++|+++++ .|+||+|.+|+. .++++|||||||||||+||||||..|++++|++|++|......+.||
T Consensus 3 ~~~~~-~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHK-TLKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCccc-cccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 46774 3567887754 899999999853 47999999999999999999999999999999999998766666799
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhh
Q 002820 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (876)
Q Consensus 179 ~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~f 258 (876)
+|+||||+|||+||+||++|||||||+++++|+||.++||.+||+++|||+||++.+++.+++.+|+.+||+||.|||.|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCceeccccccccceeeecc----CCccccCeEeecCCCCcccCcccceecccChHHHHHHHcC
Q 002820 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 334 (876)
Q Consensus 259 lkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~----~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg 334 (876)
||||+++|.||+|+|||+|||||||+||||+|||.+ +|+++||++|||||||||+||||+|||||||+|+|++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeC
Q 002820 335 QPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPV 414 (876)
Q Consensus 335 ~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~ 414 (876)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhh
Q 002820 415 DHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSC 494 (876)
Q Consensus 415 De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~ 494 (876)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|+|+++++||||+|||+||||++|||++||++++.+|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999975 57899999999999999999999999999999999999999887
Q ss_pred hcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEe
Q 002820 495 LDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLA 574 (876)
Q Consensus 495 l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~va 574 (876)
+..+...+++.... -.+....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 64332222221100 02345578899999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeec
Q 002820 575 PGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLA 654 (876)
Q Consensus 575 PGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLA 654 (876)
|||++|++||+++||+++|+++||+|++||||+||||+|++.++++++|.+||+++++|||+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCC
Q 002820 655 SPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASK 734 (876)
Q Consensus 655 SP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 734 (876)
||+|||||||+|+|+||+++||||+++||++|||+||||+.+||++++++.+++++|.+.|++++++++.|++|++++++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccc
Q 002820 735 LYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSR 814 (876)
Q Consensus 735 ~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsR 814 (876)
+|+||++||||++||||++|..+++++++|++||||++||||||||||||||+|+++||||+||++|||+++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 815 RGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 815 rgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
|||||||+||||+||||+|+|++|++||+|+|+|+||+|+||||||+||++|+||||+||.
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~ 767 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGE 767 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=4.3e-241 Score=2085.84 Aligned_cols=757 Identities=62% Similarity=1.019 Sum_probs=724.7
Q ss_pred CCchhhhcccccCCCCCceeeEeecCCCCC---CCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceE
Q 002820 102 EHPFKEILTALPKPGGGEFGKFYSLPALND---PRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (876)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI 178 (876)
.++|.. .++|++.++ .|+||+|.+|+. .++++|||||||||||+|||||++.+++++|++|++|......+.||
T Consensus 4 ~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei 80 (888)
T PRK09277 4 TDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREI 80 (888)
T ss_pred CCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCcee
Confidence 356643 567877653 799999988853 47999999999999999999999999999999999998766667899
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhh
Q 002820 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (876)
Q Consensus 179 ~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~f 258 (876)
+|+||||+|||+||+|+++|||||||+++++|+||++|||.+||+||+||+||++.+++.+++.+|+.+||+||.|||.|
T Consensus 81 ~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~f 160 (888)
T PRK09277 81 PFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQF 160 (888)
T ss_pred eeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCceeccccccccceeeecc-CC--ccccCeEeecCCCCcccCcccceecccChHHHHHHHcCC
Q 002820 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQ 335 (876)
Q Consensus 259 lkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~-~G--~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~ 335 (876)
||||+++|.||+|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|+||
T Consensus 161 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~ 240 (888)
T PRK09277 161 LKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240 (888)
T ss_pred HHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcC
Confidence 999999999999999999999999999999999977 77 999999999999999999999999999999999999999
Q ss_pred eEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCC
Q 002820 336 PMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD 415 (876)
Q Consensus 336 p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~D 415 (876)
|+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|
T Consensus 241 ~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 320 (888)
T PRK09277 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPID 320 (888)
T ss_pred cEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhh
Q 002820 416 HVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCL 495 (876)
Q Consensus 416 e~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l 495 (876)
++|++||+.|||++++++++|+|.|+|++|+. +|++|.|+++++||||+|||+||||++|||++||++++++|.+++
T Consensus 321 e~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~ 397 (888)
T PRK09277 321 EETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSA 397 (888)
T ss_pred hhHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhc
Confidence 99999999999999999999999999999963 578999999999999999999999999999999999999877653
Q ss_pred cccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEec
Q 002820 496 DNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAP 575 (876)
Q Consensus 496 ~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaP 575 (876)
.. +.+++. .+..++|....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|
T Consensus 398 ~~--~~~~~~---------~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~P 466 (888)
T PRK09277 398 EL--GVQGFG---------LDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAP 466 (888)
T ss_pred hh--hhhhhh---------hhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeC
Confidence 21 122221 1234678888999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecC
Q 002820 576 GSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLAS 655 (876)
Q Consensus 576 GS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLAS 655 (876)
||++|++||+++||+++|+++||+|++||||+||||+|++.++++++|.+|++++++|+|+||||+||||+..++|||||
T Consensus 467 GS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaS 546 (888)
T PRK09277 467 GSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLAS 546 (888)
T ss_pred CCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCCc
Q 002820 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKL 735 (876)
Q Consensus 656 P~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~ 735 (876)
|+|||||||+|+|+|||++||||+++||++|||+||||+.+||++++.+.+++++|++.|.+++++++.|++|++++++.
T Consensus 547 P~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 626 (888)
T PRK09277 547 PPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPL 626 (888)
T ss_pred HHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCccccccc
Q 002820 736 YSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRR 815 (876)
Q Consensus 736 ~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRr 815 (876)
|+||++||||++||||++++.+++++++|++||||++||||||||||||||+|+++||||+||+++||+++|||||||||
T Consensus 627 ~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrR 706 (888)
T PRK09277 627 YDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRR 706 (888)
T ss_pred cccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccc
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 816 GNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 816 gN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
||||||+||||+||||+|+|++|++||||+|+|+||.|+||||||+||++|+||||+||-
T Consensus 707 gN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~ 766 (888)
T PRK09277 707 GNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGK 766 (888)
T ss_pred ccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccC
Confidence 999999999999999999999999999999999999999999999999999999999983
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=4e-239 Score=2060.60 Aligned_cols=719 Identities=44% Similarity=0.762 Sum_probs=687.7
Q ss_pred eeeEeecC-CCC---CCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHH
Q 002820 120 FGKFYSLP-ALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPA 195 (876)
Q Consensus 120 ~~~~~~l~-~~~---~~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa 195 (876)
.|+||+|. +|. ..++++|||||||||||+||||||..++++ |++|++|. .+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w~----~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIERK----RDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcCC----CCCeeccCcceeeeccccCcch
Confidence 69999996 664 347999999999999999999999999998 99999992 3579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCC-chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCC
Q 002820 196 VVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPP 274 (876)
Q Consensus 196 ivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~-~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpP 274 (876)
+||||+|||+++++|+||++|||.+|||||||||||+|.++ +++|+.+|+.+||+||.|||+|||||+++|+||+||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCceeccccccccceeeeccCCccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccC
Q 002820 275 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLH 354 (876)
Q Consensus 275 G~GI~HQV~lE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~ 354 (876)
|+|||||||+||||+|||.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||||+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHH
Q 002820 355 NGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 434 (876)
Q Consensus 355 ~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ 434 (876)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccc
Q 002820 435 VEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKV 514 (876)
Q Consensus 435 ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~ 514 (876)
+|+|.|+|++|++ +|++|+|++++|||||+|||+||||++|||++||+|+++.... .... .
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~--~-- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE--E-- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc--c--
Confidence 9999999999975 4679999999999999999999999999999999998752110 0000 0
Q ss_pred eeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHH
Q 002820 515 VKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLN 594 (876)
Q Consensus 515 ~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~ 594 (876)
...| .+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0122 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCC
Q 002820 595 EQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDK 674 (876)
Q Consensus 595 ~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~ 674 (876)
++||+|++||||+||||+|++.++++++|.+++++.++|+|+||||+||||+..+++|||||++||||||+|+|+|||++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCCccccCCCCCcccCCCCCCCC
Q 002820 675 EPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDM 754 (876)
Q Consensus 675 eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~Styi~~ppfF~~~ 754 (876)
||||+|+||++|||+||||+.+||++++++.+++++|++.|++++++++ ++++.+++|+||++|||||+||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999999887 788889999999999999999999988
Q ss_pred CCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCccccccccccchhhhhh
Q 002820 755 TMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNK 834 (876)
Q Consensus 755 ~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~ 834 (876)
+.++.||++||||++||||||||||||||+|+++||||+||++|||.++||||||+|||||||||||||+|+||+|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--C--CCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 835 LLN--G--EVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 835 l~~--~--~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
|++ | ++||+|+|+|+||.|+||||||+||++|+||||+||.
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~ 739 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGA 739 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccC
Confidence 998 4 5899999999999999999999999999999999985
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=2.7e-234 Score=1998.31 Aligned_cols=734 Identities=61% Similarity=1.003 Sum_probs=705.5
Q ss_pred cccccCCCCCceeeEeecCCCCCC-CCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeecceeee
Q 002820 109 LTALPKPGGGEFGKFYSLPALNDP-RIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLL 187 (876)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI~~~pdrVl~ 187 (876)
.+++.+++. .|+||+|++++.. .+.+||||+|||+||++|++|+ ++++++.++.|........||.|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 456777754 8999999999754 7999999999999999999998 899999999998665566789999999999
Q ss_pred ecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccc
Q 002820 188 QDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFH 267 (876)
Q Consensus 188 qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~ 267 (876)
|||||+|++||+|+||+++.++|+||.++||.+||||+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCceeccccccccceeeeccCCccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEE
Q 002820 268 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 347 (876)
Q Consensus 268 ~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV 347 (876)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHHHhcCC
Q 002820 348 KLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 427 (876)
Q Consensus 348 ~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR 427 (876)
+|+|+|++|||||||||+|+++||++||||||||||||||++||++||+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCCCCCC
Q 002820 428 SDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVP 507 (876)
Q Consensus 428 ~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~ 507 (876)
++++++++|+|+++|+||++. +|++|+|+++||||||+|+|+||||++|||+++|++++++|.+.+.+....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~------ 392 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK------ 392 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc------
Confidence 999999999999999999774 578999999999999999999999999999999999999988765432110
Q ss_pred ccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHc
Q 002820 508 KETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQS 587 (876)
Q Consensus 508 ~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~ 587 (876)
..+...|+ ++.||+|+||+|||||||||||+|+||+||||||+++|++++|||||+|+|||++|++||+++
T Consensus 393 -------~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 393 -------RVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred -------cccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 11333444 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCc
Q 002820 588 GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (876)
Q Consensus 588 Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~ 667 (876)
||+++|+++||++++|||||||||||+|+++++++|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCCccccCCCCCcccC
Q 002820 668 VDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHE 747 (876)
Q Consensus 668 I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~Styi~~ 747 (876)
+++|+++||+|.+++|++|||+||||+.+||.+.+...+++++|++.|.++|+ |+.++++++++|.|+++||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCcccccccccc
Q 002820 748 PPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFA 827 (876)
Q Consensus 748 ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfa 827 (876)
||||+++..++.+ |++||+|++||||||||||||||+|+++||||+||.++||++.||||||||||||||||||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999999776644 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 828 Nir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
|||++|+|+++ +||||+|+|+|+ ||||||+||++|+||||+||-
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~ 740 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGK 740 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeec
Confidence 99999999988 999999999999 999999999999999999984
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=3.7e-155 Score=1355.74 Aligned_cols=590 Identities=29% Similarity=0.431 Sum_probs=512.4
Q ss_pred cHHHHHHHHhcccCCC-------------CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 002820 158 KKEDVEKIIDWENSAP-------------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL 224 (876)
Q Consensus 158 ~~~~iekil~~~~~~~-------------~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~l 224 (876)
.++++||||+.+.+.. .+.+|.++||||++||+||+|+++||++| |.+ ++.+|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCeE
Confidence 5789999999886532 23579999999999999999999998754 543 34556799
Q ss_pred EecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eE
Q 002820 225 VIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 303 (876)
Q Consensus 225 viDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tv 303 (876)
++||++|++.... .|+..++.||.|+|+|++|.+++| ||+|+|||+||||||++|+ +++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999775433 457889999999999999999999 8999999999999999995 45787 69
Q ss_pred eecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEe
Q 002820 304 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFH 383 (876)
Q Consensus 304 VGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~ 383 (876)
|||||||||+||||+|||||||+|++++|+|++|||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHH-HHHHHHHHhhccccCCCCCCCCcccEEEE
Q 002820 384 GDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA-MVEGYLRANKMFVDYNEPQQERVYSSYLE 462 (876)
Q Consensus 384 GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~-~ve~y~ka~~l~~~~~~~D~~a~Y~~vie 462 (876)
|||+++||+++|||||||++|+|||+||||+|++|++||+.+||+++..+ .++.|.. .+| .+|++|+|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999875432 2333221 223 4789999999999
Q ss_pred EEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCC
Q 002820 463 LNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNT 542 (876)
Q Consensus 463 iDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~ 542 (876)
||||+|||+||+|++|||++||+|+++++.+ .|++ .+|++|||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 1222 24789999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhcc
Q 002820 543 SNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVAST 622 (876)
Q Consensus 543 s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~ 622 (876)
|+||++.||. ++|+|++ +++++.||++|+|||++|++||+++|++++|+++||.|.+||||+|+|+++++. .
T Consensus 355 r~~Dl~~AA~-ilk~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSRCAS-IVKDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHHHHH-Hhhhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 9999665555 5577754 456677999999999999999999999999999999999999999999987553 1
Q ss_pred ccCCCeeEEEEeccCCCCCCCCCC-CCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHH
Q 002820 623 ITDNDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEV 701 (876)
Q Consensus 623 i~~~~lv~~aVsSgNRNFeGR~gp-~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~ 701 (876)
+.+|+.+ ++|||+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| ++++|++|||+ ||+.+|++++
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 4567764 6799999999999954 4578999999999999999999999999999 69999999999 7999999875
Q ss_pred HHhcCCchhhhhhcccccCCCCCcccccCC--CCCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccc
Q 002820 702 VQSSVLPDMFKSTYEAITKGNPTWNQLSVP--ASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITT 779 (876)
Q Consensus 702 ~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTT 779 (876)
+| ..++..|+.+..+ ++..|+|+++||||++||||+ +|+..+|++||||+|+||+|||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~-----~~~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFE-----PWNGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCC-----CCCcCCccCCeEEEEECCCcCh
Confidence 22 2457778877654 678999999999999999996 3567899999999999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCccccccccccchhhhhhhcC--CCCCC--ceEEcCCCceeCH
Q 002820 780 DHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP--KTVHVPTGEKLSV 855 (876)
Q Consensus 780 DHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~l~~--~~~G~--~t~~~p~ge~~~v 855 (876)
|||||||+ ||.+|| +|+|++ +|.|.. +.++| +|.+.|+|+.++|
T Consensus 563 DHIsPAG~---------~L~~rg----------------------~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAGP---------WLKYKG----------------------HLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccch---------hHhhcC----------------------Chhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 99999997 999965 566665 666653 23455 6778889999999
Q ss_pred HHHHHHHHHcCCeEEEEecC
Q 002820 856 FDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 856 ~daA~~Y~~~g~p~vv~~~~ 875 (876)
|++|++|++.++|||||||-
T Consensus 611 ~~~a~~~~~~~~~~iivaG~ 630 (745)
T TIGR01340 611 PELARDWKARGQPWVVVAEH 630 (745)
T ss_pred HHHHHHHHhCCccEEEEccc
Confidence 99999999999999999984
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=6.4e-136 Score=1186.52 Aligned_cols=509 Identities=33% Similarity=0.499 Sum_probs=452.3
Q ss_pred HHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EecCCCCCCC
Q 002820 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL-VIDHSVQVDV 234 (876)
Q Consensus 159 ~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~l-viDHsv~~d~ 234 (876)
++++||||+.+.... .+.+|.++||||++||+||++++++|++| |.++ ..+| .++ ++||+++...
T Consensus 3 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p---~~~~~~DH~~~~~~ 71 (646)
T PRK07229 3 LTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTE---LSVQYVDHNLLQAD 71 (646)
T ss_pred cCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCC---CeEEECCCCCCCCC
Confidence 678999999886533 45679999999999999999999998754 7765 3344 345 9999888763
Q ss_pred CCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCccc
Q 002820 235 TRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (876)
Q Consensus 235 ~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (876)
.||.|+|+|++|++++| ||+|+|||+||||||++|+|+ .| +++|||||||||+
T Consensus 72 ---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~~~ 125 (646)
T PRK07229 72 ---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFA----------FPGKTLLGSDSHTPTA 125 (646)
T ss_pred ---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhcc----------CCCCEEEeCCCCcCcC
Confidence 58999999999999999 899999999999999999666 46 6899999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChh
Q 002820 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (876)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 393 (876)
||||+||||||++|++++|+||++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||++
T Consensus 126 GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~ 205 (646)
T PRK07229 126 GGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVP 205 (646)
T ss_pred CcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 002820 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (876)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (876)
+|+|||||++|+|||+||||+|++|++||+.+||.+++. .+ .+|++|+|+++++||||+|||+||
T Consensus 206 ~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~-----------~l----~~D~~a~Y~~~i~iDLs~leP~va 270 (646)
T PRK07229 206 ERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV-----------EL----LADPDAEYDEVIEIDLSELEPLIA 270 (646)
T ss_pred HHhhhhccccccCceEEEecCcHHHHHHHHhcCCcccce-----------ec----cCCCCCCeeEEEEEEccceeeeee
Confidence 999999999999999999999999999999999866431 11 478999999999999999999999
Q ss_pred CCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002820 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (876)
Q Consensus 474 gP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~l 553 (876)
+|++|||++||+|+++. .|++||||||||||+||+++||++
T Consensus 271 ~P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~i 311 (646)
T PRK07229 271 GPHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASI 311 (646)
T ss_pred cCCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHH
Confidence 99999999999998631 278999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEE
Q 002820 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (876)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aV 633 (876)
| +|+||++|||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++ .+ .++++ +|
T Consensus 312 L------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~-~~-------~~~~~---~v 374 (646)
T PRK07229 312 L------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQ-AP-------ATGNV---SL 374 (646)
T ss_pred h------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCC-CC-------CCCcE---EE
Confidence 9 89999999999999999999999999999999999999999999999999854 32 24554 78
Q ss_pred eccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhh
Q 002820 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKS 713 (876)
Q Consensus 634 sSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~ 713 (876)
+|+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |++|||+ ||+.. .++.++|.
T Consensus 375 st~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~~--------~~~~~~~~- 439 (646)
T PRK07229 375 RTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEGF--------AVDDAGII- 439 (646)
T ss_pred EccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCccc--------cCChhhhc-
Confidence 999999999999888899999999999999999999 999999987 9999998 78821 22333332
Q ss_pred hcccccCCCCCcccccCCCCCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCCh
Q 002820 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSP 793 (876)
Q Consensus 714 ~y~~i~~~~~~w~~l~~~~~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ 793 (876)
..++.|+.++++. ++||+++|+|+.+ +++.++|+|+++||+||||||||||.
T Consensus 440 ------~~~~~~~~~~~~~---------~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~------ 491 (646)
T PRK07229 440 ------APAEDGSDVEVVR---------GPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA------ 491 (646)
T ss_pred ------CCCcccccccccC---------CCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc------
Confidence 2456788887664 5799999998654 48999999999999999999999996
Q ss_pred HHHHHHHcCCCcccCcccccccCCccccccccccchhhhhhhc
Q 002820 794 TAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLL 836 (876)
Q Consensus 794 ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~l~ 836 (876)
+||. +|||+|.|.|++|.+. .|.+.
T Consensus 492 --~~l~--------------~r~~~~~l~~~~f~~~--~~~f~ 516 (646)
T PRK07229 492 --KWLP--------------YRSNIPNISEFVFEGV--DNTFP 516 (646)
T ss_pred --chhc--------------cCCCHHHHHHHHhccC--Chhhh
Confidence 5665 4799999999999964 46554
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=4e-133 Score=1161.89 Aligned_cols=529 Identities=31% Similarity=0.444 Sum_probs=455.4
Q ss_pred HHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCC
Q 002820 160 EDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (876)
Q Consensus 160 ~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (876)
+++||||+.+.... .+.+|.++||||++||+||++++++|++| |.+ ++.|.+ +.+++||+++....
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d~- 69 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFDF- 69 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCCh-
Confidence 36789998886643 45689999999999999999999998765 443 344543 67899999887532
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccCc
Q 002820 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (876)
Q Consensus 237 ~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~Gg 315 (876)
||.|+|+||+|.+++| ++.|+|||+||||||++|+|+ .| +++|||||||||+||
T Consensus 70 --------------~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~t~Ga 124 (658)
T TIGR01342 70 --------------KNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFA----------APGKTLLGSDSHTPTAGG 124 (658)
T ss_pred --------------hhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhcc----------CCCCEEEecCcCcCCCCc
Confidence 6789999999999999 568999999999999999665 46 689999999999999
Q ss_pred ccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhh
Q 002820 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (876)
Q Consensus 316 LGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dR 395 (876)
||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 125 lG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 204 (658)
T TIGR01342 125 LGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPER 204 (658)
T ss_pred ccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCC
Q 002820 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (876)
Q Consensus 396 aTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (876)
||||||++|+|||+||||+|++|++||+.++|.+++.. | .+|++|+|+++++||||+|||+||+|
T Consensus 205 ~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P 269 (658)
T TIGR01342 205 ATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEP 269 (658)
T ss_pred hhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCC
Confidence 99999999999999999999999999999998654211 2 47999999999999999999999999
Q ss_pred CCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 002820 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (876)
Q Consensus 476 ~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLa 555 (876)
++|||++||+|+++ . +|+++|||||||+|++|+++||++|
T Consensus 270 ~~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il- 309 (658)
T TIGR01342 270 HMPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL- 309 (658)
T ss_pred CCCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh-
Confidence 99999999999863 1 2568999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEec
Q 002820 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (876)
Q Consensus 556 k~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsS 635 (876)
+|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+ .++++ +|+|
T Consensus 310 -----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~--------~~~~~---~vst 373 (658)
T TIGR01342 310 -----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAP--------ASDGV---SLRS 373 (658)
T ss_pred -----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCC--------CCCcE---EEEc
Confidence 8999999999999999999999999999999999999999999999999996543 23443 7899
Q ss_pred cCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCC-CCChHHHHHHHHhcCCchhhhhh
Q 002820 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDI-WPTTEEIAEVVQSSVLPDMFKST 714 (876)
Q Consensus 636 gNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~di-wPs~~Ei~~~~~~~v~~~~f~~~ 714 (876)
+||||+||||+..+.+|||||++|||+||+|+| +|+.. |+.+ +| |+ ||+.++ |+.|...
T Consensus 374 ~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~~-~g------~~~~p~~~~----------p~~~~~~ 433 (658)
T TIGR01342 374 FNRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LADD-EG------DLEAIGFEM----------GEKFPGG 433 (658)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hccc-cC------cccCCCCCC----------chhhccc
Confidence 999999999998889999999999999999999 67763 5433 45 45 887652 4556555
Q ss_pred cccccCCCCCcccccC---CCCCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCC
Q 002820 715 YEAITKGNPTWNQLSV---PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKD 791 (876)
Q Consensus 715 y~~i~~~~~~w~~l~~---~~~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~ 791 (876)
|..++ |+.++. ++.+.+. |+||++||+|+++. .+|++ |+++++||+||||||+|||.+
T Consensus 434 ~~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~--- 494 (658)
T TIGR01342 434 YDAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD--- 494 (658)
T ss_pred ccccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc---
Confidence 65433 777665 4444544 89999999998763 46777 999999999999999999985
Q ss_pred ChHHHHHHHcCCCcccCcccccccCCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEE
Q 002820 792 SPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYN 871 (876)
Q Consensus 792 s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv 871 (876)
||.+ |||.+. .+.++.+.++++. .+.|++|++.+.+|||
T Consensus 495 -----~l~~--------------r~~~~~-------------------l~~~~~~~~~p~f---~~~~~~~~~~~~~~ii 533 (658)
T TIGR01342 495 -----ILKF--------------RSNIEA-------------------ISEFTLHRIDDEF---AERAKAADEKGKAGII 533 (658)
T ss_pred -----cccc--------------CCCHHH-------------------HhhheeeCCCchH---HHHhhcccccCCceEE
Confidence 6633 444332 2345666666654 4899999999999999
Q ss_pred EecC
Q 002820 872 YLGW 875 (876)
Q Consensus 872 ~~~~ 875 (876)
|||.
T Consensus 534 VaG~ 537 (658)
T TIGR01342 534 IAGE 537 (658)
T ss_pred EcCC
Confidence 9984
No 12
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.6e-131 Score=1084.50 Aligned_cols=400 Identities=77% Similarity=1.209 Sum_probs=388.9
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002820 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (876)
Q Consensus 184 rVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~ 263 (876)
||+|||+||+|+++|||+|||+++++|+||+++||.+|++|++||+++++..+..+++.+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cccccceeeCCCCceeccccccccceeeec----cCCccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEe
Q 002820 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 339 (876)
Q Consensus 264 ~~f~~i~vvpPG~GI~HQV~lE~la~vv~~----~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l 339 (876)
++|+|++++|||+||||||++|+||++++. ++|+++|+++|||||||||+||||+||||||++|++++|+||++|+
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 3589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHH
Q 002820 340 VLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419 (876)
Q Consensus 340 ~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~ 419 (876)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccc
Q 002820 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKV 499 (876)
Q Consensus 420 ~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~ 499 (876)
+++++||||+|||+||+|++|+|++||..
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~------------- 265 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG------------- 265 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcCC-------------
Confidence 56799999999999999999999999821
Q ss_pred cCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHH
Q 002820 500 GFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGV 579 (876)
Q Consensus 500 ~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~ 579 (876)
+|++||||||||+|+||+++||++|+|||++||+||+||||++|+|||++
T Consensus 266 ------------------------------~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 266 ------------------------------SVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred ------------------------------cEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 37799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHH
Q 002820 580 VTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 659 (876)
Q Consensus 580 V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lV 659 (876)
|+++|+++||+++|.++||.|.+|||++|+|+++++.+.+++.+.+||+++++|||+||||+||||+..+++|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred HHHHHhCcc
Q 002820 660 VAYALAGTV 668 (876)
Q Consensus 660 aA~AlaG~I 668 (876)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 13
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2e-121 Score=1029.09 Aligned_cols=451 Identities=25% Similarity=0.372 Sum_probs=394.2
Q ss_pred HHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCC--
Q 002820 159 KEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT-- 235 (876)
Q Consensus 159 ~~~iekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~-- 235 (876)
++++|||++.+.+.. .+..+.++|||+++||+|+++++. +|| ++|. +.++|. ++++++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~---~~~----~~g~--~v~~p~-~~~~~~DH~vp~~~~~~ 72 (465)
T TIGR00170 3 RTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFE---GLR----QAGR--KVRRPQ-KTFATMDHNIPTQNRDF 72 (465)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHH---HHH----HcCC--CcCCCc-CEEEEeCCCCCCCCccc
Confidence 678999999887643 455688999999999999999974 333 3463 355555 689999999999764
Q ss_pred CchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccC
Q 002820 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (876)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~G 314 (876)
+..++...|+..++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+|
T Consensus 73 ~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~G 135 (465)
T TIGR00170 73 NIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTHG 135 (465)
T ss_pred cccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCccccc
Confidence 56677889999999999999875 2 245679999999999999 899999 68999999999999
Q ss_pred cccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhh
Q 002820 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (876)
Q Consensus 315 gLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~d 394 (876)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++||.+|++||+|||+|+||++||+++
T Consensus 136 alGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~ 215 (465)
T TIGR00170 136 AFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEG 215 (465)
T ss_pred cccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccC
Q 002820 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (876)
Q Consensus 395 RaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAg 474 (876)
|||||||++|+|||+||||+|++|++||+.+++... .++|.+++.+|+.. .+|++|.|+++++||||+|||+||+
T Consensus 216 R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va~ 290 (465)
T TIGR00170 216 RMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVTW 290 (465)
T ss_pred hhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeecC
Confidence 999999999999999999999999999998877543 37788999999754 5799999999999999999999999
Q ss_pred CCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcc--cccCccEEEEEeecCCCCCChHHHHHHH
Q 002820 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (876)
Q Consensus 475 P~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~iA~IgSCTN~s~~dl~~aA~ 552 (876)
|++|+|++||+++.+++....... ++......++|+|... .+.+++|++||||||||||++|+++||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~ 360 (465)
T TIGR00170 291 GTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAA 360 (465)
T ss_pred CCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999876654432210 0111111233333221 3668899999999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEE
Q 002820 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (876)
Q Consensus 553 lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~a 632 (876)
+| ||+||+||||++|+|||++|++||+++||+++|+++||+|.+|||++|+|+++++.++ +++ +
T Consensus 361 vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~---~ 424 (465)
T TIGR00170 361 VI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER---C 424 (465)
T ss_pred Hh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---E
Confidence 98 9999999999999999999999999999999999999999999999999999888644 444 5
Q ss_pred EeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 633 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 633 VsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
++|+||||+||||+. ..+|||||++||||||+|+|
T Consensus 425 isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~i 459 (465)
T TIGR00170 425 ASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHF 459 (465)
T ss_pred EEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCcee
Confidence 689999999999985 47799999999999999999
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-122 Score=1021.92 Aligned_cols=577 Identities=29% Similarity=0.456 Sum_probs=489.8
Q ss_pred cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhh
Q 002820 175 QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKE 254 (876)
Q Consensus 175 ~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~E 254 (876)
...+.++||||+|||.|++|++++|+. .|.. ++ .+|..++|||.+.+...+..| +.+.-+.|+|
T Consensus 82 ~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~--kv--avPstIhCdhli~a~~gg~~D-----l~~a~~~Nke 145 (778)
T KOG0453|consen 82 GSYLKLRPDRVAMQDASAQMALLQFMS-------SGLK--KV--AVPSTIHCDHLIEAQVGGDKD-----LQRASDLNKE 145 (778)
T ss_pred cceEEEcccceecccchhhHHHHHHHh-------cCcc--cc--cCCceEEecceeeeccCCcch-----hhhhhhhhHH
Confidence 457999999999999999999999853 4654 22 457799999999988777655 5566789999
Q ss_pred hhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCCcccCcccceecccChHHHHHHHc
Q 002820 255 RFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAML 333 (876)
Q Consensus 255 ry~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaaml 333 (876)
.|.||..+.++| ||.||+||+||+||++||+|| ||+ ++|||||||+++||||+|++||||+||+++|+
T Consensus 146 vydfl~saakky-gi~Fw~pGsGIiHQIvlEnYA----------fPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA 214 (778)
T KOG0453|consen 146 VYDFLESAAKKY-GIGFWKPGSGIIHQIVLENYA----------FPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMA 214 (778)
T ss_pred HHHHHHHHHHhc-CCCccCCCCceeeeeeeeccc----------CCcceEEeccCCCCCCCccceeeeccccchHHHHhc
Confidence 999999999888 699999999999999999655 786 68999999999999999999999999999999
Q ss_pred CCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeee
Q 002820 334 GQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFP 413 (876)
Q Consensus 334 g~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp 413 (876)
++||.+++|+++||+|+|+|+.|+++|||||++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||
T Consensus 215 ~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP 294 (778)
T KOG0453|consen 215 TQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFP 294 (778)
T ss_pred CCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhh
Q 002820 414 VDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHS 493 (876)
Q Consensus 414 ~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~ 493 (876)
+|+.+++||+.|||.+. .+..++|+++ +. .+|++|.|+++||||||+|+|+|+||++|+-..|++++.+...
T Consensus 295 ~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~- 366 (778)
T KOG0453|consen 295 YNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE- 366 (778)
T ss_pred CCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh-
Confidence 99999999999999974 3445556655 22 5899999999999999999999999999999999999875311
Q ss_pred hhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEE
Q 002820 494 CLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSL 573 (876)
Q Consensus 494 ~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~v 573 (876)
-+|||.+ |..++||||||+|++|+-.+|. ++++|..+|+|.+ |.+.|
T Consensus 367 -------------------------kn~wp~~-----i~~gligSCTNSsyeDm~raa~-iv~~a~~~glk~~--v~F~V 413 (778)
T KOG0453|consen 367 -------------------------KNGWPIK-----IKVGLIGSCTNSSYEDMSRAAD-IVKQAKGKGLKPK--VPFYV 413 (778)
T ss_pred -------------------------hcCCcee-----eeeeEEEeecCccHHHHHHHHH-HHHHHHhcCCCCC--cceEe
Confidence 1456653 5678999999999999777666 5599987777655 99999
Q ss_pred ecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCC-Ccee
Q 002820 574 APGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLT-RANY 652 (876)
Q Consensus 574 aPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~-~~~Y 652 (876)
+|||.+|+..++|+|+++.|+++|+.+++++||||||+|.+- . |++||.- +.|+|+||||.||++... ...|
T Consensus 414 tpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~--d----vk~GE~n-tivts~NRNFtgRnd~np~t~af 486 (778)
T KOG0453|consen 414 TPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK--D----IKKGEKN-TIVTSYNRNFTGRNDANPATHAF 486 (778)
T ss_pred ccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc--c----ccCCCcC-ceeeeecccccccCCCCcchhhc
Confidence 999999999999999999999999999999999999998652 1 3344432 247999999999997544 4679
Q ss_pred ecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCC
Q 002820 653 LASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA 732 (876)
Q Consensus 653 LASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~ 732 (876)
|+||++|+|+|++|++.||+++|.| ++.||+.|.|+. |..+|+++ +-++|. .+.|+...... .
T Consensus 487 ltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g--~~ty~ap~~~~---------~ 549 (778)
T KOG0453|consen 487 LTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPG--QDTYQAPPSSS---------S 549 (778)
T ss_pred ccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCC--cccccCCCCCC---------C
Confidence 9999999999999999999999999 889999999998 99998875 334442 23344321111 1
Q ss_pred CCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccc
Q 002820 733 SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYG 812 (876)
Q Consensus 733 ~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsyg 812 (876)
......||+|+.++....|+ +|..+|++++.||+|+.++|||||||-||+ ||+||||..+-.|.+
T Consensus 550 ~~~v~v~p~s~rlqlLepF~-----~w~gkd~edl~ilikv~gkCttDhIsaaGp---------wlkY~Ghl~nisnn~- 614 (778)
T KOG0453|consen 550 VVEVDVDPTSDRLQLLEPFD-----KWDGKDLEDLKILIKVKGKCTTDHISAAGP---------WLKYRGHLENISNND- 614 (778)
T ss_pred cceeecCCcccchhhcCCCC-----cccccccccceEEEEEecccCccccccCCc---------ceeccchhhhcccch-
Confidence 24567899999999998886 688899999999999999999999999999 999998766543332
Q ss_pred cccCCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 813 SRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 813 sRrgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
+-| ..|+-. + +-....++.+||..+|.+.|++||++|++||+|++.
T Consensus 615 ---------~ig------ain~En-~-e~n~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~ 660 (778)
T KOG0453|consen 615 ---------LIG------AINKEN-G-EANCVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDE 660 (778)
T ss_pred ---------hhh------hcchhh-h-hhhhhhhccccccCCcCchhhhHHhcCceeEEEccc
Confidence 111 122221 1 223566777999999999999999999999999974
No 15
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=6.9e-121 Score=1026.04 Aligned_cols=452 Identities=27% Similarity=0.391 Sum_probs=399.6
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCC
Q 002820 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (876)
Q Consensus 158 ~~~~iekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (876)
.++++|||++.+.... .+.+|.++|||+++||+|+++++.+|++| |. +.+||.++ .+++||++|++.++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4688999999886643 34489999999999999999999988643 53 47888875 68999999999732
Q ss_pred ---chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCCcc
Q 002820 237 ---SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 312 (876)
Q Consensus 237 ---~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTtm 312 (876)
..+....|+.+++++|.+||.+ +| +++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------RL--FDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------ee--eccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3456778899999999998864 12 45578999999999999 8999997 69999999999
Q ss_pred cCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCCh
Q 002820 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSL 392 (876)
Q Consensus 313 ~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv 392 (876)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeec
Q 002820 393 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCI 472 (876)
Q Consensus 393 ~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~V 472 (876)
++|||||||++|+||++||||+|++|++||+.++|.++. ++|.+++..|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 4788888888754 58999999999999999999999
Q ss_pred cCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcc--cccCccEEEEEeecCCCCCChHHHHH
Q 002820 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLG 550 (876)
Q Consensus 473 AgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~iA~IgSCTN~s~~dl~~a 550 (876)
|+|++|+|++||+|+.+++.++++.. ++.......+|++... .+.+..|++||||||||||+||+++|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999998887765432 0011112234444322 25678999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeE
Q 002820 551 AGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVA 630 (876)
Q Consensus 551 A~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~ 630 (876)
|++| ||+||+||||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|+++++.+ ++++
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~-------~ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLA-------PGER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCC-------CCCE--
Confidence 9999 999999999999999999999999999999999999999999999999999987753 3554
Q ss_pred EEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 631 ~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
+|||+||||+||||+. ..+|||||++||||||+|+|
T Consensus 426 -~vsT~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I 461 (471)
T PRK12466 426 -CASTTNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHI 461 (471)
T ss_pred -EEEecCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEe
Confidence 6899999999999994 56799999999999999999
No 16
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=1.6e-121 Score=1033.08 Aligned_cols=456 Identities=40% Similarity=0.632 Sum_probs=367.3
Q ss_pred HHHHHHHhcccCC----CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCC
Q 002820 160 EDVEKIIDWENSA----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (876)
Q Consensus 160 ~~iekil~~~~~~----~~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (876)
|+.|||++.+... ..+.+|.++|||+++||+||++++.+|++|+. ++++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 4678888877553 23457999999999999999999999876632 2445553 79999999999976
Q ss_pred CchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CceeccccccccceeeeccCCccccC-eEeecCCCCccc
Q 002820 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMI 313 (876)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG-~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~ 313 (876)
+.+ |+..++.+|+++|+|++|.++.|+ +.+++|| .||||||++| .|++.|+ ++|||||||||+
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~ 135 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTY 135 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchh
Confidence 433 788899999999999999999986 5555555 5999999999 8889995 799999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChh
Q 002820 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (876)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 393 (876)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||++
T Consensus 136 GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~ 215 (465)
T PF00330_consen 136 GALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMD 215 (465)
T ss_dssp GGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HH
T ss_pred hhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 002820 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (876)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (876)
+|||||||++|+||++||||+|++|++||+.++|.+...++.+.|.+.+.|| +|++|.|+++++||||+|||+||
T Consensus 216 ~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va 290 (465)
T PF00330_consen 216 DRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVA 290 (465)
T ss_dssp HHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE
T ss_pred hhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCccccccc
Confidence 9999999999999999999999999999999999988777788888888876 68899999999999999999999
Q ss_pred CCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCC--CcccccCccEEEEEeecCCCCCChHHHHHH
Q 002820 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG--QPAELKHGSVVIAAITSCTNTSNPSVMLGA 551 (876)
Q Consensus 474 gP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g--~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA 551 (876)
+|++|+|++||+|+.+++.++++.. . +......++|++ ...++.+++|++||||||||||+||+++||
T Consensus 291 ~P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA 360 (465)
T PF00330_consen 291 GPHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAA 360 (465)
T ss_dssp -SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHH
T ss_pred cCCCCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHH
Confidence 9999999999999999988765421 1 111112345543 335788999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccC-CCeeE
Q 002820 552 GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITD-NDIVA 630 (876)
Q Consensus 552 ~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~-~~lv~ 630 (876)
++|+++|+ ++++||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 361 ~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~-- 430 (465)
T PF00330_consen 361 GILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV-- 430 (465)
T ss_dssp HHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE--
T ss_pred HHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce--
Confidence 99988775 799999999999999999999999999999999999999999999999996 3221 222 444
Q ss_pred EEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhC
Q 002820 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 666 (876)
Q Consensus 631 ~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG 666 (876)
+|+|+||||+||||+..+.+|||||++||||||+|
T Consensus 431 -~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 -CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp -EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred -EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 78999999999999999999999999999999998
No 17
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=2.1e-120 Score=1021.87 Aligned_cols=451 Identities=26% Similarity=0.370 Sum_probs=397.8
Q ss_pred HHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCC--
Q 002820 159 KEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT-- 235 (876)
Q Consensus 159 ~~~iekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~-- 235 (876)
++++|||++.+.+.. .+..+.+++||+++||+|+++++..| +++|. +.++|.. +.+++||++|++..
T Consensus 3 ~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~-------~~~g~--~v~~p~~-~~~~~DH~v~~~~~~~ 72 (466)
T PRK05478 3 KTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGL-------RLAGR--KVRRPDL-TFATMDHNVPTTDRDL 72 (466)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHH-------HHcCC--CccCCCC-eEEEcCCCCCCCcccc
Confidence 678999999887643 45568899999999999999997544 33464 4677774 78899999999985
Q ss_pred CchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccC
Q 002820 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (876)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~G 314 (876)
...++...|+.+++++|.+||.+. | +++.+||+||||||++| +|+++| +++|||||||||+|
T Consensus 73 ~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~G 135 (466)
T PRK05478 73 PIADPVSRIQVETLEKNCKEFGIT------L--FDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTHG 135 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEeCeEccc---------cccccCCceEEecCCCccccc
Confidence 466778899999999999998762 2 45567899999999999 889999 68999999999999
Q ss_pred cccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhh
Q 002820 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (876)
Q Consensus 315 gLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~d 394 (876)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+||||++||+++
T Consensus 136 alGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~ 215 (466)
T PRK05478 136 AFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEG 215 (466)
T ss_pred hhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccC
Q 002820 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (876)
Q Consensus 395 RaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAg 474 (876)
|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++.+|+.. .+|++|+|+++++||||+|||+||+
T Consensus 216 R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~ 290 (466)
T PRK05478 216 RMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTW 290 (466)
T ss_pred HhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeecC
Confidence 99999999999999999999999999999554432 577899999999765 5799999999999999999999999
Q ss_pred CCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcc--cccCccEEEEEeecCCCCCChHHHHHHH
Q 002820 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (876)
Q Consensus 475 P~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~iA~IgSCTN~s~~dl~~aA~ 552 (876)
|++|||++||+|+.+++.+++++.. +.......+|++... .+.+++|++||||||||||+||+++||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ 360 (466)
T PRK05478 291 GTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAA 360 (466)
T ss_pred CCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHH
Confidence 9999999999999998887776431 111112233433211 2668899999999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEE
Q 002820 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (876)
Q Consensus 553 lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~a 632 (876)
+| ||+||+||||++|+|||++|++||+++|++++|.++||.|.+||||+|+|++++.. .+|++ +
T Consensus 361 il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~---~ 424 (466)
T PRK05478 361 VV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER---C 424 (466)
T ss_pred Hh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---E
Confidence 99 99999999999999999999999999999999999999999999999999975542 46776 6
Q ss_pred EeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 633 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 633 VsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
|+|+||||+||||+.. .+|||||++||||||+|+|
T Consensus 425 vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~I 459 (466)
T PRK05478 425 ASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHF 459 (466)
T ss_pred EEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCc
Confidence 8899999999999665 5899999999999999999
No 18
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=6.5e-120 Score=1002.69 Aligned_cols=409 Identities=33% Similarity=0.520 Sum_probs=365.0
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002820 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (876)
Q Consensus 184 rVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~ 263 (876)
||++||+||+++++||++| |. ++.++| .++++||++|++.++.++ ...++.+|.|+|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 8999999999999999644 54 445544 588999999999776554 4667889999999999999
Q ss_pred cccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecC
Q 002820 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (876)
Q Consensus 264 ~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 342 (876)
++| ||+|+|||+||||||++|+ +++|| ++|||||||||+||||+||||||++|++++|+|++|||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999994 56897 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHH
Q 002820 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (876)
Q Consensus 343 evVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL 422 (876)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCC
Q 002820 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (876)
Q Consensus 423 ~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~ 502 (876)
+.++|.++ ++++++|+ ++.++ +|++|+|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99999866 78888887 34443 7889999999999999999999999999999999999864321
Q ss_pred CCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002820 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (876)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~ 582 (876)
.|++ .+|++||||||||||+||+..|| .++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1121 14889999999999999965555 66799999999998 89999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCC-CChhhhccccCCCeeEEEEeccCCCCCCCCC-CCCCceeecCHHHHH
Q 002820 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD-LDESVASTITDNDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 660 (876)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~-l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~g-p~~~~~YLASP~lVa 660 (876)
||+++||+++|.++||.|.+||||+|+|++++ .. .+++.. ++|||+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-------~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDI-------KKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCccc-------CCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 21 233322 368999999999994 445679999999999
Q ss_pred HHHHhCcc
Q 002820 661 AYALAGTV 668 (876)
Q Consensus 661 A~AlaG~I 668 (876)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 19
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=9.5e-117 Score=1029.12 Aligned_cols=524 Identities=22% Similarity=0.295 Sum_probs=411.8
Q ss_pred cHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCc
Q 002820 158 KKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (876)
Q Consensus 158 ~~~~iekil~~~~~~~~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~ 237 (876)
.++++||||+.+.+...+..|.+++|++++||.|+++++..|. ++|.+ ++ | +|+.+++||+++....++
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~-------~~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAK-------ASGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHH-------HcCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 4678999999987765556799999999999999998876553 45874 45 4 689999999999875443
Q ss_pred hhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccCcc
Q 002820 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 316 (876)
Q Consensus 238 ~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgL 316 (876)
.|.+.|.|++...++|+ +.|+|||+||||||++|+|+ .| +++|||||||| +|||
T Consensus 103 -------------~n~~~~~~~~~~a~k~G-i~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 -------------INEDDHVFGLSAAQKYG-GIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred -------------ccHHHHHHHHHHHHHcC-CcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cchh
Confidence 23345666666666664 67999999999999999554 57 58999999996 8999
Q ss_pred cceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCc-cceEEEEecCcccCCChhhh
Q 002820 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGV-VGKFVEFHGDGMGELSLADR 395 (876)
Q Consensus 317 Gvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~Gv-vGk~VEF~GpGv~~LSv~dR 395 (876)
|+|||||||+|++.+|+|++||+++||+|+|+|+|+|++||+||||||+|+++|+.+|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred hhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCC
Q 002820 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (876)
Q Consensus 396 aTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (876)
||||||++|+|||+||||+|++|++||+.++|.+.+. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~-----------~l----~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYC-----------EL----NPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhce-----------ec----cCCCCCCeeEEEEEEcccceeeecCC
Confidence 9999999999999999999999999999999875421 11 47999999999999999999999999
Q ss_pred CCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCccccc--CccEEEEEeecCCCCCChHHHHHHHH
Q 002820 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGL 553 (876)
Q Consensus 476 ~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~--~g~V~iA~IgSCTN~s~~dl~~aA~l 553 (876)
++|||++||+|+.+++.++++.. +.++..+ ......++.. .++. .-.|++||||||||||++|++.||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~---~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLL---DKIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhcccccc---ccccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999998888776542 1111111 0001111110 0122 23689999999999999999999999
Q ss_pred HHHHHHhcCCccC-CceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEE
Q 002820 554 VAKKACELGLQVK-PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (876)
Q Consensus 554 Lak~A~~kGlkV~-p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~a 632 (876)
| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+ .++++ +
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~~--------~~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDTP--------ANNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCcC--------CCCCE---E
Confidence 9 899997 5799999999999999999999999999999999999999999986442 34555 6
Q ss_pred EeccCCCCCCCCCCCCCc-----eeecCHHHHHHHHHh-CccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcC
Q 002820 633 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSV 706 (876)
Q Consensus 633 VsSgNRNFeGR~gp~~~~-----~YLASP~lVaA~Ala-G~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v 706 (876)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|-..+. ++ |.++ ..+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p~---~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVPE---YAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCCC---ccc
Confidence 899999999999998776 677778989999998 6995 3322210 01 1111 123
Q ss_pred Cchhhh-hhcccccCCCCCcccccCCCCCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCcc-ccccCC
Q 002820 707 LPDMFK-STYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSIT-TDHISP 784 (876)
Q Consensus 707 ~~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iT-TDHISP 784 (876)
+..+|. ..|....+. -..+++.. +..|+..|-++.+ .+-..++|++|+||+|| ||||+|
T Consensus 497 ~~~~y~~~~~~~~~~~---~~~~~~~~---------gPni~~~p~~~~l-------~~~~~~kv~~k~~D~itTTD~i~p 557 (751)
T PRK11413 497 DVTPYKNRVYQGFGKG---ATQQPLIY---------GPNIKDWPEMGAL-------TDNILLKVCSKILDPVTTTDELIP 557 (751)
T ss_pred CccccccccccCCCCC---CCcceEEe---------CcCCCCCCCCCCC-------CCcEEEEEEEEeCCCCcccccccc
Confidence 333332 222211111 11122111 1134444443322 34456789999999996 999999
Q ss_pred CCCCCCCChHHHHHHHcCCCcc
Q 002820 785 AGSIHKDSPTAKYLLERGVERR 806 (876)
Q Consensus 785 AG~I~~~s~ag~yL~~~Gv~~~ 806 (876)
||. ||.+|+..++
T Consensus 558 aG~---------~l~~Rsn~~~ 570 (751)
T PRK11413 558 SGE---------TSSYRSNPLG 570 (751)
T ss_pred CCC---------ccccccCHHH
Confidence 997 8998876655
No 20
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=2.3e-115 Score=960.40 Aligned_cols=380 Identities=27% Similarity=0.430 Sum_probs=343.1
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002820 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (876)
Q Consensus 184 rVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~ 263 (876)
|+++||+|+++++. +||+ +|.+ +.+||.. +++++||++|++ +....|+.+++.+|.+||.
T Consensus 1 ~~~~hD~t~p~a~~---~~~~----~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLRE----AGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHH---HHHH----hCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhC------
Confidence 68999999999974 3444 4442 3445543 689999999998 3446677778888877653
Q ss_pred cccccceeeCC-CCceeccccccccceeeeccCCcccc-CeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeec
Q 002820 264 SAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (876)
Q Consensus 264 ~~f~~i~vvpP-G~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~v 341 (876)
|+++++ |+||||||++| +|++.| +++|||||||||+||||+||||||++|++++|+||++|+++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 334556 89999999999 788889 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHH
Q 002820 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (876)
Q Consensus 342 PevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~Y 421 (876)
||+|+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+||+|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccC
Q 002820 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (876)
Q Consensus 422 L~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~ 501 (876)
|+.++|.+. + .+ .+|++|+|+++++||||+|||+||+|++|||++||+|+++.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999987631 1 22 47999999999999999999999999999999999998631
Q ss_pred CCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002820 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (876)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~ 581 (876)
+|++||||||||||+||+++||++| ||+||+||||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 2679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHH
Q 002820 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (876)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA 661 (876)
++|+++||+++|.++||.|.+|||++|+|+++++. .+||+ +|||+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987763 55675 689999999999998888999999999999
Q ss_pred HHHhCcc
Q 002820 662 YALAGTV 668 (876)
Q Consensus 662 ~AlaG~I 668 (876)
+||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 21
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=5e-114 Score=1001.98 Aligned_cols=428 Identities=27% Similarity=0.418 Sum_probs=364.7
Q ss_pred HHHHHHHHhccc-----CC--CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 002820 159 KEDVEKIIDWEN-----SA--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (876)
Q Consensus 159 ~~~iekil~~~~-----~~--~~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~ 231 (876)
++++|||++.+. +. ..+.+|.++||++|+||.|+++++ +| .++|.+ +.++|.. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~-------~~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KF-------MGIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HH-------HHcCCC-ccCCCCC-EEEEcCCCCC
Confidence 567889888775 22 245679999999999999999853 34 246764 5777764 7889999999
Q ss_pred CCCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCC
Q 002820 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (876)
Q Consensus 232 ~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHT 310 (876)
..... |.+.|+|++-..++| +|+|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~~---------------~~~~~~~l~~fAkk~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSDK---------------NLKKYKNIEEFAKKH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCHH---------------HHHHHHHHHHHHHHh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 87532 223333443334444 588999999999999999 8999997 579999999
Q ss_pred cccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEec--Cccc
Q 002820 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHG--DGMG 388 (876)
Q Consensus 311 tm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~G--pGv~ 388 (876)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCChhhhhhhhccccccCcceeeeeCChHHHHHHHhcCCChh--------HHHHHHHHHH---HhhccccCCCCCCCCcc
Q 002820 389 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVAMVEGYLR---ANKMFVDYNEPQQERVY 457 (876)
Q Consensus 389 ~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~--------~i~~ve~y~k---a~~l~~~~~~~D~~a~Y 457 (876)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...|. ...+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999976311 0011112111 111111 2258999999
Q ss_pred cEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEee
Q 002820 458 SSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAIT 537 (876)
Q Consensus 458 ~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~Ig 537 (876)
+++++||||+|+|+||+|++|++++||+++... + -+|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------------------------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------------------------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C-------------------------ceeeeEEEe
Confidence 999999999999999999999999999987320 1 136799999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcC---CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCC
Q 002820 538 SCTNTSNPSVMLGAGLVAKKACELG---LQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD 614 (876)
Q Consensus 538 SCTN~s~~dl~~aA~lLak~A~~kG---lkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~ 614 (876)
||||+|++|+++||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.++||.|.++||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888763 7899999999999999999999999999999999999999999999999987
Q ss_pred CChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccc
Q 002820 615 LDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (876)
Q Consensus 615 l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (876)
+.+ ++++ +|+|+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 409 ~~~-------~gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It 453 (712)
T TIGR00139 409 LLE-------PGEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS 453 (712)
T ss_pred CCC-------CCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC
Confidence 753 4454 68999999999999888899999999999999999994
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=5.1e-114 Score=955.71 Aligned_cols=404 Identities=28% Similarity=0.435 Sum_probs=360.9
Q ss_pred HHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCc
Q 002820 160 EDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (876)
Q Consensus 160 ~~iekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~ 237 (876)
+++|||++.+.+.. .+..+.+++|++++||.|+++++..| +++|. ++.+||.. +.+++||++|+....
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~-------~~~g~-~~v~~P~~-v~~~~DH~~p~~~~~- 70 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRL-------EEYGI-DKVFDPER-IVIVVDHVVPASTIK- 70 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHH-------HHcCC-CcCCCCCc-EEEEcCCCCCCCChh-
Confidence 36789999887642 45568899999999999999997655 34565 35777764 789999999988643
Q ss_pred hhHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccCc
Q 002820 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (876)
Q Consensus 238 ~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~-vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~Gg 315 (876)
.+..++..++|.+ ++ +|. |++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 71 -~a~~~~~~r~fa~--------~~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 71 -AAEMQKLAREFVK--------KT------GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred -HHHHHHHHHHHHH--------Hc------CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 3445555666665 22 354 789999999999999 889999 689999999999999
Q ss_pred ccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhh
Q 002820 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (876)
Q Consensus 316 LGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dR 395 (876)
||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCC
Q 002820 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (876)
Q Consensus 396 aTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (876)
+|||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999998765311 12 47999999999999999999999999
Q ss_pred CCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 002820 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (876)
Q Consensus 476 ~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLa 555 (876)
++|+|++||+++.+. .|+|||||||||||++|+++||++|
T Consensus 271 ~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEGI---------------------------------------EVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCCC---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 999999999997631 2679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEec
Q 002820 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (876)
Q Consensus 556 k~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsS 635 (876)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.... .+|++ +|+|
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l-------~~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVL-------APGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 89999999999999999999999999999999999999999999999999864432 34565 6899
Q ss_pred cCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 636 gNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
+||||+||||+..+.+|||||++||||||+|+|
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 408 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRI 408 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCccc
Confidence 999999999988888999999999999999999
No 23
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=3e-114 Score=949.46 Aligned_cols=379 Identities=36% Similarity=0.577 Sum_probs=347.6
Q ss_pred ceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhc
Q 002820 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (876)
Q Consensus 183 drVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~ 262 (876)
|++++||.|+++++..| +++|.+ +.++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~-------~~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQF-------EAMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHH-------HHcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 78999999999998655 456764 355563 7889999999864 2677889999999
Q ss_pred ccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeec
Q 002820 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (876)
Q Consensus 263 ~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~v 341 (876)
+++| ||++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 9998 6999999999999999994 4457 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHH
Q 002820 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (876)
Q Consensus 342 PevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~Y 421 (876)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+||+|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccC
Q 002820 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (876)
Q Consensus 422 L~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~ 501 (876)
|+.+||.+++. .+ .+|++|+|+++++||||+|||+||+|++|+|++||+++++.
T Consensus 205 l~~~gr~~~~~----------~l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~----------- 258 (380)
T cd01585 205 LAAQGREDDWV----------EL-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAGI----------- 258 (380)
T ss_pred HHhcCCchhcc----------cc-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCCc-----------
Confidence 99999864321 12 47999999999999999999999999999999999998630
Q ss_pred CCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002820 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (876)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~ 581 (876)
+|++||||||||+|+||+++||++| ||+||+||||++|+|||++|+
T Consensus 259 ----------------------------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 259 ----------------------------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred ----------------------------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 2789999999999999999999999 899999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHH
Q 002820 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (876)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA 661 (876)
++|+++||+++|+++||.|.+|||++|+|+++.+ .+|++ +|+|+||||+||||+..+.+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~--------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAP--------PTGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC--------CCCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 9999999999999999999999999999997653 24565 689999999999998888999999999999
Q ss_pred HHHhCcc
Q 002820 662 YALAGTV 668 (876)
Q Consensus 662 ~AlaG~I 668 (876)
+||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 24
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=2e-113 Score=952.35 Aligned_cols=405 Identities=30% Similarity=0.465 Sum_probs=360.9
Q ss_pred HHHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCC
Q 002820 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (876)
Q Consensus 159 ~~~iekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (876)
++++|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++|.+ +.+||.. +.+++||++|+...
T Consensus 3 ~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-~~~~~DH~~p~~~~- 72 (418)
T PRK00402 3 MTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFE-------KIGGD-KVFDPSK-IVIVFDHFVPAKDI- 72 (418)
T ss_pred cCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-ccCCCCc-EEEECCCCCCCCCh-
Confidence 678999999987643 455688999999999999999986653 34654 4677774 78999999999864
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccC
Q 002820 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (876)
Q Consensus 237 ~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~-vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~G 314 (876)
..+..++..++|.+ ++ +|+ |++||+|||||+++| +|++.| +++|||||||||+|
T Consensus 73 -~~a~~~~~~r~fa~--------~~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~G 128 (418)
T PRK00402 73 -KSAEQQKILREFAK--------EQ------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTYG 128 (418)
T ss_pred -hhHHHHHHHHHHHH--------Hc------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCccccC
Confidence 33445555555555 22 354 688999999999999 888999 58999999999999
Q ss_pred cccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhh
Q 002820 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (876)
Q Consensus 315 gLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~d 394 (876)
|||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+++
T Consensus 129 alG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~ 208 (418)
T PRK00402 129 ALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDE 208 (418)
T ss_pred ccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccC
Q 002820 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (876)
Q Consensus 395 RaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAg 474 (876)
|+|||||++|+|||+||||+|++|++||+.+++.+.. .+ .+|++|.|+++++||||+|||+||+
T Consensus 209 R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~l----~~D~~a~Y~~~i~iDls~leP~va~ 272 (418)
T PRK00402 209 RMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDYK------------PW----KSDEDAEYEEVYEIDLSKLEPQVAA 272 (418)
T ss_pred HhhhhhcccccCceeeEecCChHHHHHHHhhcccccc------------cc----cCCCCCCEEEEEEEEcccceeeeec
Confidence 9999999999999999999999999999998543310 12 4799999999999999999999999
Q ss_pred CCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHH
Q 002820 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLV 554 (876)
Q Consensus 475 P~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lL 554 (876)
|++|+|++||+++++. .|++||||||||||+||+++||++|
T Consensus 273 P~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~eDl~~aA~il 313 (418)
T PRK00402 273 PHLPDNVKPVSEVEGT---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEIL 313 (418)
T ss_pred CCCccceeEchhhCCc---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH
Confidence 9999999999998631 2679999999999999999999999
Q ss_pred HHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEe
Q 002820 555 AKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVL 634 (876)
Q Consensus 555 ak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVs 634 (876)
||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++.... .+|++ +||
T Consensus 314 ------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vs 377 (418)
T PRK00402 314 ------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVL-------APGEV---CLS 377 (418)
T ss_pred ------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEE
Confidence 99999999999999999999999999999999999999999999999999864432 34565 689
Q ss_pred ccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 635 SGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 635 SgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
|+||||+||||+..+.+|||||++||||||+|+|
T Consensus 378 T~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~i 411 (418)
T PRK00402 378 TTNRNFKGRMGSPESEVYLASPAVAAASAVTGKI 411 (418)
T ss_pred ecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCee
Confidence 9999999999987789999999999999999999
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.9e-113 Score=951.14 Aligned_cols=404 Identities=28% Similarity=0.410 Sum_probs=362.6
Q ss_pred HHHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCC
Q 002820 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (876)
Q Consensus 159 ~~~iekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (876)
++++|||++.+.+.. .+..+.+++|++++||.|+++++..| +++| .+++||.. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~-------~~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETL-------RELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHH-------HHcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 467899999887642 45578899999999999999997655 3456 56788875 789999999998642
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccCc
Q 002820 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (876)
Q Consensus 237 ~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~Gg 315 (876)
.+..++..++|.+ + | |+++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~--------~-----~-gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAK--------E-----H-GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHH--------H-----c-CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 3334444444444 2 2 477789999999999999 899999 579999999999999
Q ss_pred ccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhh
Q 002820 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (876)
Q Consensus 316 LGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dR 395 (876)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCC
Q 002820 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (876)
Q Consensus 396 aTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (876)
+|||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|+|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFR------------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccc------------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 999999999999999999999999999999875411 22 47999999999999999999999999
Q ss_pred CCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 002820 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (876)
Q Consensus 476 ~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLa 555 (876)
++|+|++|++++.+. +|++||||||||+|++|+++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998631 2679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEec
Q 002820 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (876)
Q Consensus 556 k~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsS 635 (876)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++..+. .+|++ +|+|
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999985543 45665 6899
Q ss_pred cCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 636 gNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~i 407 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYI 407 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCcc
Confidence 999999999988788999999999999999999
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=3.3e-112 Score=941.03 Aligned_cols=408 Identities=31% Similarity=0.458 Sum_probs=360.7
Q ss_pred HHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCC
Q 002820 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (876)
Q Consensus 159 ~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (876)
++++|||++.+.+.. .+..|.+++|++++||.|+++++..| +++|. ++.+||.. +.+++||++|+...
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f-------~~~g~-~~V~dp~~-v~~~~DH~vpa~~~ 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAF-------KEYGG-KKVFDPDR-VALVPDHFTPNKDI 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHH-------HHcCC-CcCCCCCC-EEEEeCCCCCCCCH
Confidence 367899999987643 45578899999999999999987655 44565 45778875 78999999999853
Q ss_pred CchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCC-ceeccccccccceeeeccCCcccc-CeEeecCCCCccc
Q 002820 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (876)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~-GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (876)
..+..++..++|.| ++++++ |+++|. |||||+++| +|++.| +++|||||||||+
T Consensus 72 --~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 72 --KSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred --HHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 44556666677776 334332 567885 999999999 999999 5799999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChh
Q 002820 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (876)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 393 (876)
||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 002820 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (876)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (876)
+|||||||++|+||++||||+|++|++||+.+++.+ ++ .+ .+|++|+|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999765432 11 22 479999999999999999999999
Q ss_pred CCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002820 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (876)
Q Consensus 474 gP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~l 553 (876)
+|++|+|++||++++.. |. +|++||||||||||++|+++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------------------------g~-------~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------------------------EI-------KIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------------------------cC-------ccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998620 11 367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEE
Q 002820 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (876)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aV 633 (876)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.... .++++ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l-------~~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGIL-------AEGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EE
Confidence 9 99999999999999999999999999999999999999999999999999874433 34554 68
Q ss_pred eccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 634 sSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
||+||||+||||.....+|||||++|||+||+|+|
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 413 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYI 413 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCc
Confidence 99999999999865678999999999999999999
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-109 Score=894.15 Aligned_cols=409 Identities=30% Similarity=0.452 Sum_probs=359.7
Q ss_pred HHHHHHHHhcccCCC--C-cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCC
Q 002820 159 KEDVEKIIDWENSAP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (876)
Q Consensus 159 ~~~iekil~~~~~~~--~-~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (876)
+|..|||++.+.+.. . +..+-.++|++|+||.|++.++.- ++++|. +.++|.. +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~-------lr~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEG-------LREAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHH-------HHHhCC--cccCccc-eEEEecCCCCCccH
Confidence 688999999987643 2 234678999999999999998753 345665 5777775 78899999999865
Q ss_pred CchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CceeccccccccceeeeccCCcccc-CeEeecCCCCccc
Q 002820 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (876)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG-~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (876)
.. + ++..++.+|.++| ++ +.|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~~--a---~~~~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KA--A---EQQKELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HH--H---HHHHHHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 33 3 3444555555433 32 3456778 9999999999 999999 5899999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChh
Q 002820 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (876)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 393 (876)
||||+||+|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 002820 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (876)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (876)
+|||||||++|+||++|+|+|||+|++||+... ++...|+.. .+|+||+|+++++||+|+|||+|+
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 999999999999999999999999999999322 122244443 589999999999999999999999
Q ss_pred CCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002820 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (876)
Q Consensus 474 gP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~l 553 (876)
||++|+|++|++++.++. -+|+++|||||||+|++||++||++
T Consensus 275 ~p~~p~nv~~v~e~~~~~-------------------------------------i~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPDP-------------------------------------IKIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCCc-------------------------------------eeeceEEEeccCCccHHHHHHHHHH
Confidence 999999999999986421 1377999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEE
Q 002820 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (876)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aV 633 (876)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|++.+.. .+||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL-------~~gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVL-------GPGER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcC-------CCCCE---Ee
Confidence 9 89999999999999999999999999999999999999999999999999986654 34555 57
Q ss_pred eccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 634 sSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
||+||||+||||+..+.+||+||+++||+|++|+|
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i 416 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEI 416 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEe
Confidence 99999999999966778999999999999999999
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=2e-105 Score=890.62 Aligned_cols=402 Identities=24% Similarity=0.359 Sum_probs=349.6
Q ss_pred HHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCch
Q 002820 162 VEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSE 238 (876)
Q Consensus 162 iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~ 238 (876)
+||||+.+.+.. .+..|.+++|++++||.||++++..|. ++|. +++||.. +.+++||++|+... .
T Consensus 2 ~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~-------~~~~--~v~d~~~-~v~~~DH~~p~~~~--~ 69 (436)
T cd01581 2 AQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VMQSFCHTAAYPKP--V 69 (436)
T ss_pred hHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHH-------HcCC--cccCCcc-EEEEcCCCCCCCCH--H
Confidence 689999886643 456788999999999999999987653 4554 4677774 78999999999864 3
Q ss_pred hHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCCcccCccc
Q 002820 239 NAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLG 317 (876)
Q Consensus 239 ~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLG 317 (876)
.+..++..++|.++ + ++.|++||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 ~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga-- 122 (436)
T cd01581 70 DVKTHRTLPDFISN--------R------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG-- 122 (436)
T ss_pred HHHHHHHHHHHHHH--------c------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc--
Confidence 44467777777773 2 356799999999999888 35786 46999999999987
Q ss_pred ceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHH------------HHhcCccceEEEEecC
Q 002820 318 VAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQM------------LRKHGVVGKFVEFHGD 385 (876)
Q Consensus 318 vlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~------------Lr~~GvvGk~VEF~Gp 385 (876)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+.. ++.+|++||+|||.
T Consensus 123 -~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~-- 199 (436)
T cd01581 123 -ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE-- 199 (436)
T ss_pred -eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--
Confidence 799999999999999999999999999999999999999999999987643 33334689999995
Q ss_pred cccCCChhhhhhhhccccccCcceeeeeCChHH-HHHHHhc----------CCCh-----hHHHHHHHHHHHhhccccCC
Q 002820 386 GMGELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----ETVAMVEGYLRANKMFVDYN 449 (876)
Q Consensus 386 Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T-~~YL~~t----------gR~~-----~~i~~ve~y~ka~~l~~~~~ 449 (876)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||++ +..+.+++|.+++.+|
T Consensus 200 Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (436)
T cd01581 200 GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL---- 275 (436)
T ss_pred CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc----
Confidence 599999999999999999999999999999988 8999996 5542 3456778888887777
Q ss_pred CCCCCCcccEEEEEEcCCc-eeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccC
Q 002820 450 EPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKH 528 (876)
Q Consensus 450 ~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~ 528 (876)
.+|++|+|+++++||||+| ||+||+|++|+|++||+++.+.
T Consensus 276 ~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~-------------------------------------- 317 (436)
T cd01581 276 EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK-------------------------------------- 317 (436)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC--------------------------------------
Confidence 4799999999999999999 9999999999999999997631
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccc
Q 002820 529 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTC 608 (876)
Q Consensus 529 g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~C 608 (876)
.|+++||||||| +++|++.||.+| ||+++++ ||++|+|||++|+++|+++|++++|.++||.|.+||||+|
T Consensus 318 -~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~~-vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C 388 (436)
T cd01581 318 -KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 (436)
T ss_pred -ccceEEEecCCC-CHHHHHHHHHHH------cCCCCCC-CCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccc
Confidence 256899999999 999999999999 8999754 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 609 IGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 609 iGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
+|+.+.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 389 ~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 389 MGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred cCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 9985543 56776 689999999999999 668999999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.4e-104 Score=867.16 Aligned_cols=360 Identities=32% Similarity=0.491 Sum_probs=318.4
Q ss_pred eeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhccc
Q 002820 185 VLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSS 264 (876)
Q Consensus 185 Vl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~ 264 (876)
+++||.|+++++. | .++|. ++.+||.. +.+++||++|+.... .+..++..++|.|
T Consensus 2 ~~~hd~t~p~~~~-~-------~~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak------------- 56 (363)
T cd01582 2 CMTHDNSWPVALK-F-------MSIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAK------------- 56 (363)
T ss_pred eeEEeCcHHHHHH-H-------HHcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH-------------
Confidence 7999999998754 4 24565 46788874 788999999998642 3334444444444
Q ss_pred ccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCc
Q 002820 265 AFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPG 343 (876)
Q Consensus 265 ~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPe 343 (876)
+| +|+|++||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++||
T Consensus 57 ~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe 126 (363)
T cd01582 57 KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPP 126 (363)
T ss_pred Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCC
Confidence 23 478899999999999999 8999997 579999999999999999999999999999999999999999
Q ss_pred EEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHHH
Q 002820 344 VVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLK 423 (876)
Q Consensus 344 vVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~ 423 (876)
+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||++|||+|
T Consensus 127 ~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D-------- 198 (363)
T cd01582 127 VAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD-------- 198 (363)
T ss_pred EEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCC
Q 002820 424 LTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKG 503 (876)
Q Consensus 424 ~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g 503 (876)
+++++||||+|||+||+|++|+|++|+++++.. +
T Consensus 199 ----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------~ 232 (363)
T cd01582 199 ----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------N 232 (363)
T ss_pred ----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------C
Confidence 457999999999999999999999999997420 0
Q ss_pred CCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcC-CccCCceeEEEecCcHHHHH
Q 002820 504 FAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LQVKPWVKTSLAPGSGVVTK 582 (876)
Q Consensus 504 ~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kG-lkV~p~Vkt~vaPGS~~V~~ 582 (876)
-+|++||||||||+|++|+++||++|.++..++| ++|+||||++|+|||++|++
T Consensus 233 -------------------------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~ 287 (363)
T cd01582 233 -------------------------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQA 287 (363)
T ss_pred -------------------------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHH
Confidence 1367999999999999999999999943333222 34999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHH
Q 002820 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 662 (876)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~ 662 (876)
+|+++||+++|.++||.|.+|||++|+|+++++.+ ++|+ +|||+||||+||||+..+.+|||||++||||
T Consensus 288 ~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAs 357 (363)
T cd01582 288 AAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLE-------PGEV---GISATNRNFKGRMGSTEALAYLASPAVVAAS 357 (363)
T ss_pred HHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHH
Confidence 99999999999999999999999999999987643 4565 5899999999999988889999999999999
Q ss_pred HHhCcc
Q 002820 663 ALAGTV 668 (876)
Q Consensus 663 AlaG~I 668 (876)
||+|+|
T Consensus 358 Ai~G~i 363 (363)
T cd01582 358 AISGKI 363 (363)
T ss_pred HhCccC
Confidence 999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=1.5e-100 Score=847.69 Aligned_cols=388 Identities=38% Similarity=0.612 Sum_probs=352.4
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002820 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (876)
Q Consensus 184 rVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~ 263 (876)
||++||+||++++.+|+. +|.+.+.+||. ++.+++||++|++. .+|.++|+|++|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~-------~~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-------LAALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHH-------cCCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 799999999999987753 45532455554 69999999999963 26777888888888
Q ss_pred cccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecC
Q 002820 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (876)
Q Consensus 264 ~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 342 (876)
++|+ +++++||+|||||+++|++ ..| ++++||||||||+||||++|||+|++|++++|+||++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 8885 8999999999999999944 356 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHH
Q 002820 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (876)
Q Consensus 343 evVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL 422 (876)
++++|+|+|+|++||++|||+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCC
Q 002820 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (876)
Q Consensus 423 ~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~ 502 (876)
+.++|.+..+ +++.|.+. + .+|++|+|+++++|||++|||+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999987654 44444432 2 4799999999999999999999999999999999999752
Q ss_pred CCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002820 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (876)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~ 582 (876)
.+|++||||||||+|++|++.||.+| ||+||+++||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 13789999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHH
Q 002820 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 662 (876)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~ 662 (876)
+++++||+++|+++||.|..+||++|+|+++++. .+|++ +|+|+||||+||||+..+.+|||||++|||+
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~-------~~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLV-------ADGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcC-------CCCcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 9999999999999999999999999999998874 34554 6899999999999998889999999999999
Q ss_pred HHhCcc
Q 002820 663 ALAGTV 668 (876)
Q Consensus 663 AlaG~I 668 (876)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=3.5e-98 Score=873.90 Aligned_cols=423 Identities=24% Similarity=0.333 Sum_probs=367.1
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002820 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (876)
Q Consensus 157 ~~~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d 233 (876)
..++++|||++.+.+.. .+..|..++|.|++||.||++++. +++++|. ..++|.. |.+++||.+|..
T Consensus 369 ~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~-------~~~~lg~--~~~~~d~-v~~~~dH~~p~~ 438 (835)
T PRK09238 369 KGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRD-------ELKDLAC--LGFSADL-VMQSFCHTAAYP 438 (835)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHH-------HHHHcCC--cccCCCc-EEEEccCCCCCC
Confidence 45789999999886642 456789999999999999999854 5567776 4667764 788999999987
Q ss_pred CCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccCe-EeecCCCCcc
Q 002820 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (876)
Q Consensus 234 ~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGTDSHTtm 312 (876)
.. .++..++..++|.+++ ++.+++||+||||||+ +|+++||+ ++||||||||
T Consensus 439 ~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~t 491 (835)
T PRK09238 439 KP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 491 (835)
T ss_pred CH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccCC
Confidence 53 4555677777777742 2445889999999996 35789986 5999999999
Q ss_pred cCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHh------------cCccceEE
Q 002820 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKFV 380 (876)
Q Consensus 313 ~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~------------~GvvGk~V 380 (876)
+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 492 ~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~l 568 (835)
T PRK09238 492 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568 (835)
T ss_pred CCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEE
Confidence 998 689999999999999999999999999999999999999999999999444333 34789999
Q ss_pred EEecCcccCCChhhhhhhhccccccCcceeeee-CChHHHHHHHhc----------CCCh-----hHHHHHHHHHHHhhc
Q 002820 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRSD-----ETVAMVEGYLRANKM 444 (876)
Q Consensus 381 EF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp-~De~T~~YL~~t----------gR~~-----~~i~~ve~y~ka~~l 444 (876)
||. |+++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||++ .+++.+++|++.+.+
T Consensus 569 Ef~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~l 646 (835)
T PRK09238 569 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPEL 646 (835)
T ss_pred EEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhccc
Confidence 994 6999999999999999999999999999 678889999986 7652 356788999998888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCc
Q 002820 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (876)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (876)
| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 647 l----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~--------------------------------- 689 (835)
T PRK09238 647 L----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT--------------------------------- 689 (835)
T ss_pred c----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC---------------------------------
Confidence 8 5799999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002820 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (876)
Q Consensus 524 ~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (876)
.|++||||||| |+++|+++||.+| ||+++++.||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 690 ------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~p 756 (835)
T PRK09238 690 ------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMP 756 (835)
T ss_pred ------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 26689999999 9999999999999 9999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCC
Q 002820 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 683 (876)
Q Consensus 604 GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G 683 (876)
||++|+||++.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 757 GCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I--------------- 809 (835)
T PRK09238 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRI--------------- 809 (835)
T ss_pred cchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCcc---------------
Confidence 999999996554 56776 689999999999997 567999999999999999999
Q ss_pred CeeeccCCCCChHHHHHHHHhcCC
Q 002820 684 KSVYFKDIWPTTEEIAEVVQSSVL 707 (876)
Q Consensus 684 ~~v~l~diwPs~~Ei~~~~~~~v~ 707 (876)
|+.+|+.+++.+...
T Consensus 810 ---------~~p~e~~~~~~~~~~ 824 (835)
T PRK09238 810 ---------PTVEEYQEYVAEIDA 824 (835)
T ss_pred ---------CCHHHHHHHHhhhcc
Confidence 677888877765433
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=5.8e-97 Score=861.43 Aligned_cols=421 Identities=23% Similarity=0.340 Sum_probs=365.2
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002820 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (876)
Q Consensus 157 ~~~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d 233 (876)
..++.+|||++.+.+.. .+..|..++|.|++||.||++++.. ++++|. ..++|.. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~-------~~~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDE-------LKELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHH-------HHHhCC--ceECCCc-EEEEeCCCCCCC
Confidence 45799999999886642 4567899999999999999998654 455655 4667764 788999999877
Q ss_pred CCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccCe-EeecCCCCcc
Q 002820 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (876)
Q Consensus 234 ~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGTDSHTtm 312 (876)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 34566777777877742 345788999999999876 458975 6999999999
Q ss_pred cCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHh------------cCccceEE
Q 002820 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKFV 380 (876)
Q Consensus 313 ~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~------------~GvvGk~V 380 (876)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|.+||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 56 999999999999999999999999999999999999999999999999655443 34689999
Q ss_pred EEecCcccCCChhhhhhhhccccccCcceeeeeCChH-HHHHHHhc----------CCCh-----hHHHHHHHHHHHhhc
Q 002820 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVAMVEGYLRANKM 444 (876)
Q Consensus 381 EF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~-T~~YL~~t----------gR~~-----~~i~~ve~y~ka~~l 444 (876)
||. |+++||+++|+|||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++.+.+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 69999999999999999999999999999965 89999995 7654 357788999988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCc
Q 002820 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (876)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (876)
| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 5799999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002820 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (876)
Q Consensus 524 ~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (876)
.|+++|||||| |+.+|+++||.+| ||+++.+ ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25689999999 7999999999999 8999988 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCC
Q 002820 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 683 (876)
Q Consensus 604 GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G 683 (876)
||++|+||++.+ .+|++ +|||+||||+||||+. ..+|||||++|||+||+|+|
T Consensus 757 GCg~C~Gn~~~v--------~~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I--------------- 809 (844)
T TIGR00117 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKI--------------- 809 (844)
T ss_pred ccccccCCCCcC--------CCCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCccc---------------
Confidence 999999997665 35665 5789999999999985 57999999999999999999
Q ss_pred CeeeccCCCCChHHHHHHHHhcC
Q 002820 684 KSVYFKDIWPTTEEIAEVVQSSV 706 (876)
Q Consensus 684 ~~v~l~diwPs~~Ei~~~~~~~v 706 (876)
|+.+|+.+++.+..
T Consensus 810 ---------~dp~e~~~~~~~~~ 823 (844)
T TIGR00117 810 ---------PTPEEYQTYVSEKD 823 (844)
T ss_pred ---------CCHHHHHHHHHhhc
Confidence 77788888877533
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=1.1e-94 Score=840.60 Aligned_cols=420 Identities=22% Similarity=0.318 Sum_probs=360.6
Q ss_pred ccHHHHHHHHhcccCC----CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCC
Q 002820 157 VKKEDVEKIIDWENSA----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQV 232 (876)
Q Consensus 157 ~~~~~iekil~~~~~~----~~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~ 232 (876)
..++++|||++.+.+. ..+..|..++|.|++||.||++++.. ++++|.. .++|.. |.+++||.+|+
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~e-------fkel~~~--~~dpdk-v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDE-------LKDLACL--GFSADL-VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHH-------HHHhccc--ccCccc-EEEEccCCCCC
Confidence 4578999999988653 24567899999999999999998654 4554432 334432 68999999888
Q ss_pred CCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCCc
Q 002820 233 DVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 311 (876)
Q Consensus 233 d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTt 311 (876)
... .++..++..++|.++ + ++.+++||+|||||++.| ++.|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~--------~------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRN--------R------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHH--------c------CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 455666677777773 1 345788999999999755 67886 5899999999
Q ss_pred ccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHH------HHHHh------cCccceE
Q 002820 312 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVT------QMLRK------HGVVGKF 379 (876)
Q Consensus 312 m~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~------~~Lr~------~GvvGk~ 379 (876)
+..|+ +||.|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+ +.|+. .+++||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 88886 558899999999999999999999999999999999999999999997 44433 3458999
Q ss_pred EEEecCcccCCChhhhhhhhccccccCcceeeeeCCh-HHHHHHHh----------cCCC-----hhHHHHHHHHHHHhh
Q 002820 380 VEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DETVAMVEGYLRANK 443 (876)
Q Consensus 380 VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De-~T~~YL~~----------tgR~-----~~~i~~ve~y~ka~~ 443 (876)
||| +|+++||+++|+|||||++|+||++|+||+|+ .|++||+. +|+. +++++.+|+|++.+.
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 4544 345778999999888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCC
Q 002820 444 MFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 522 (876)
Q Consensus 444 l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~ 522 (876)
+| .+|++|+|+++||||||+| ||+||+|++|||++||+|+.+.
T Consensus 720 ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~-------------------------------- 763 (938)
T PLN00094 720 LL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGD-------------------------------- 763 (938)
T ss_pred cc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcCC--------------------------------
Confidence 87 5799999999999999999 9999999999999999998631
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEec
Q 002820 523 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 602 (876)
Q Consensus 523 ~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~ 602 (876)
.|++||||||| |+++|+++||.+| +|+++++.||++|+|||++|+++|+++|++++|.++||.|..
T Consensus 764 -------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~ 829 (938)
T PLN00094 764 -------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEM 829 (938)
T ss_pred -------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcC
Confidence 25689999999 7999999999999 899999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCC
Q 002820 603 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKD 682 (876)
Q Consensus 603 ~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~ 682 (876)
||||+|+||++.+ .+|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|
T Consensus 830 PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~I-------------- 883 (938)
T PLN00094 830 PGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRL-------------- 883 (938)
T ss_pred CccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCcc--------------
Confidence 9999999997665 45665 689999999999998 568999999999999999999
Q ss_pred CCeeeccCCCCChHHHHHHHHh
Q 002820 683 GKSVYFKDIWPTTEEIAEVVQS 704 (876)
Q Consensus 683 G~~v~l~diwPs~~Ei~~~~~~ 704 (876)
|+.+|+.+++.+
T Consensus 884 ----------tdpre~l~~~~~ 895 (938)
T PLN00094 884 ----------PTVEEYLSYMEK 895 (938)
T ss_pred ----------CCHHHHHHHHHh
Confidence 667777777765
No 34
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=1.3e-52 Score=467.98 Aligned_cols=418 Identities=25% Similarity=0.387 Sum_probs=338.1
Q ss_pred cCCccccHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHc---CCCCCccCCCCCEEEEecC
Q 002820 152 CDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKL---GSDSNKINPLVPVDLVIDH 228 (876)
Q Consensus 152 ~~~~~~~~~~iekil~~~~~~~~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~---G~dp~~inp~~pv~lviDH 228 (876)
..|+++.|+++.+.++-. +.+.+.....+...|-.||.||+|. ||+++++ |.+ +|+++..
T Consensus 370 gkG~TlaqKmvgrAcGv~-girpGtycepkmttVGSQDTTGpMT-------rdElk~lAclgfs---------aD~vmQS 432 (852)
T COG1049 370 GKGFTLAQKMVGRACGVP-GIRPGTYCEPKMTTVGSQDTTGPMT-------RDELKDLACLGFS---------ADLVMQS 432 (852)
T ss_pred CCcccHHHHHhhhccCCc-cccCCCcccceeeeeccccCCCCcc-------HHHHHHHHhhccc---------chhhhhh
Confidence 456666555555544332 2345667888889999999999998 5555554 444 5788888
Q ss_pred CCCCCCCC-chhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccCeE-eec
Q 002820 229 SVQVDVTR-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGT 306 (876)
Q Consensus 229 sv~~d~~~-~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pdtv-VGT 306 (876)
++.+..+- ..|-..+.....|-- .++++. ..||.||||.+. +.++.|||| .|+
T Consensus 433 fCHTAaypkpvdv~th~~Lp~Fi~-------------~rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGG 487 (852)
T COG1049 433 FCHTAAYPKPVDVKTHHTLPDFIM-------------NRGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGG 487 (852)
T ss_pred cccccccCCccchhccccchHHHh-------------hcCcee-cCCCCccHHHHH-----------HhccCCcceecCC
Confidence 77765432 222112222223333 344444 458999999986 568899985 899
Q ss_pred CCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcC------------
Q 002820 307 DSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHG------------ 374 (876)
Q Consensus 307 DSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~G------------ 374 (876)
||||.+.-|+ +|+.|+--++.+.+++.+.|.+||+|.|+++|+++||+|-+|||.+|--..-+.|
T Consensus 488 DSHTRfpiGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~Ni 564 (852)
T COG1049 488 DSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNI 564 (852)
T ss_pred cccccccccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccce
Confidence 9999999887 6788888899999999999999999999999999999999999998864332221
Q ss_pred ccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCC-hHHHHHHHh----------cCCCh-----hHHHHHHHH
Q 002820 375 VVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRSD-----ETVAMVEGY 438 (876)
Q Consensus 375 vvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~D-e~T~~YL~~----------tgR~~-----~~i~~ve~y 438 (876)
..|+++|. +|+.+|.+++-++++..++|..|..+.+-.+ |..++||+. .|+.+ ..++..|+|
T Consensus 565 FsGRIlEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~w 642 (852)
T COG1049 565 FSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAW 642 (852)
T ss_pred ecceeEEe--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Confidence 35899999 8899999999999999999999999888775 456899985 35554 357788999
Q ss_pred HHHhhccccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceee
Q 002820 439 LRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKF 517 (876)
Q Consensus 439 ~ka~~l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~ 517 (876)
+....|+ .+|.+|+|..+|||||++| ||++|+|.+|||+..++++..+
T Consensus 643 la~p~ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~--------------------------- 691 (852)
T COG1049 643 LANPELL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD--------------------------- 691 (852)
T ss_pred hcCcccc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC---------------------------
Confidence 9888887 6899999999999999999 9999999999999999987631
Q ss_pred ecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCc--cCCceeEEEecCcHHHHHHHHHcCcHHHHHh
Q 002820 518 SFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQ--VKPWVKTSLAPGSGVVTKYLLQSGLQKYLNE 595 (876)
Q Consensus 518 ~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlk--V~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~ 595 (876)
.|+.+|||||.. ..-+++++|++| +|.+ ++ .|++|+|.++....+|.++|+..+|-+
T Consensus 692 ------------~idevFiGSCMt-niGh~ra~~klL------~~~~~~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~ 750 (852)
T COG1049 692 ------------KIDEVFIGSCMT-NIGHFRAAGKLL------ENAKGELP--TRLWVAPPTKMDAAQLTEEGYYSIFGK 750 (852)
T ss_pred ------------ccceeeeehhhc-cchhHHHHHHHH------HhcccCCC--cceEecCCccccHHHHhhcchHHHHhh
Confidence 256799999985 578999999999 4443 45 789999999999999999999999999
Q ss_pred cCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCC
Q 002820 596 QGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKE 675 (876)
Q Consensus 596 aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~e 675 (876)
+|+++.-|||+.|+||+... ++|.. .+||+.|||++|+|... .+||+|.+|+|.+||.|+|
T Consensus 751 agar~E~PGCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki------- 811 (852)
T COG1049 751 AGARIEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI------- 811 (852)
T ss_pred ccceecCCCcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC-------
Confidence 99999999999999997654 56776 46899999999999875 5899999999999999998
Q ss_pred CcccCCCCCeeeccCCCCChHHHHHHHHh
Q 002820 676 PIGTTKDGKSVYFKDIWPTTEEIAEVVQS 704 (876)
Q Consensus 676 plg~~~~G~~v~l~diwPs~~Ei~~~~~~ 704 (876)
|+.||..+++.+
T Consensus 812 -----------------Pt~eEY~~~v~~ 823 (852)
T COG1049 812 -----------------PTVEEYMAYVAK 823 (852)
T ss_pred -----------------CCHHHHHHHHHH
Confidence 999999998873
No 35
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=6.3e-47 Score=373.03 Aligned_cols=104 Identities=65% Similarity=0.918 Sum_probs=102.2
Q ss_pred eecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCccccccccccchhhhhhhcCCCCCCceEEcCCCc
Q 002820 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (876)
Q Consensus 772 ~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge 851 (876)
+|||+||||||||||+|+++||||+||+++||+++||||||||||||||||||||+|+||+|+|++|++|++|+|+|+||
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCHHHHHHHHHHcCCeEEEEecC
Q 002820 852 KLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 852 ~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
+|+||||||+||++|+||||+||-
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~ 104 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGK 104 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccC
Confidence 999999999999999999999983
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=7.1e-25 Score=240.07 Aligned_cols=419 Identities=14% Similarity=0.068 Sum_probs=292.3
Q ss_pred HHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCC
Q 002820 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (876)
Q Consensus 159 ~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (876)
++..++|+++..... .+.++...+|-.+.||..+.-+.--+ .++++....+|+|.+ +...+||.+-+...
T Consensus 67 ~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpgs 139 (502)
T KOG0454|consen 67 MTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPGS 139 (502)
T ss_pred cccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecCc
Confidence 555667777654421 23456677788888887776554321 123344444555553 57789998766543
Q ss_pred CchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCcccc-CeEeecCCCCcccC
Q 002820 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (876)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGTDSHTtm~G 314 (876)
+ .-......++..|-.-.-.| .|- .+-.+|..-+--.|.||.-. -| .+.-.| ....|+||||++.+
T Consensus 140 g--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~yer---ca------stsnRnfEgrqGa~srThlma 206 (502)
T KOG0454|consen 140 G--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHYER---CA------STSNRNFEGRQGADSRTHLMA 206 (502)
T ss_pred h--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHHHH---hh------hccCCCccccccccccchhhh
Confidence 2 11122223333332221122 342 33345555554479999632 22 455566 46899999999999
Q ss_pred cccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhh
Q 002820 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (876)
Q Consensus 315 gLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~d 394 (876)
+.+.++-|+|+.++......+...+++|.++.++|.|..+.-..++|+++.++...-..+-..+..||-+--. +|+++.
T Consensus 207 ~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~ 285 (502)
T KOG0454|consen 207 ASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMET 285 (502)
T ss_pred hhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcc
Confidence 9999999999999999998888999999999999999999999999999999888878888899999976555 799999
Q ss_pred hhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCC-CCcccEEEEEEcCCceeecc
Q 002820 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQ-ERVYSSYLELNLADVEPCIS 473 (876)
Q Consensus 395 RaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~-~a~Y~~vieiDLs~veP~VA 473 (876)
|+|||||..|-+-|-+++|.|--|+-|-....++. + + -|+ .|. .+.|...+.+|.+..+|...
T Consensus 286 F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~-----f---~----~~~----~dg~~k~~~~dFv~~vE~~~~~si 349 (502)
T KOG0454|consen 286 FHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSC-----F---Y----EVA----LDGLPKSFVTDFVLPVEPLRKYSI 349 (502)
T ss_pred eeeeehhhhhhCCcCcccChhhhcccccchhhhhh-----h---h----hhe----ecCCchhhccceeccccccceeEE
Confidence 99999999999999999999766655543333222 1 1 121 122 36788889999999999888
Q ss_pred CCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002820 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (876)
Q Consensus 474 gP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~l 553 (876)
.|+. ||.-==++ -+|-.|...++|+|+-..-++.|+
T Consensus 350 ii~~-DNFGCGSS---------------------------------------REHAPv~L~~~GakaivA~Sya~I---- 385 (502)
T KOG0454|consen 350 IIGG-DNFGCGSS---------------------------------------REHAPVCLGAAGAKAIVAPSYARI---- 385 (502)
T ss_pred Eecc-CCcccccc---------------------------------------cccCcchhhhcccceecchhHHHH----
Confidence 8877 54311111 114456678899999998887665
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHH-----HHHc---CcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccC
Q 002820 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKY-----LLQS---GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITD 625 (876)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~-----l~~~---Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~ 625 (876)
.+|+-++.|+.++ +...+.|-.+.++.. +-.+ -++.+++..+..=+.|-|..|.++.-+ .+....++
T Consensus 386 FfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~~k 460 (502)
T KOG0454|consen 386 FFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYARK 460 (502)
T ss_pred HHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhhcc
Confidence 5566677899887 445666665444321 2221 256677788876678899999997521 12222222
Q ss_pred CCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCc
Q 002820 626 NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (876)
Q Consensus 626 ~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~ 667 (876)
.. .|+|.||||++|||....++|||||.+|+|+++.|+
T Consensus 461 e~----mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 461 EG----MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cc----ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 22 579999999999999999999999999999999998
No 37
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.86 E-value=4e-22 Score=218.64 Aligned_cols=201 Identities=24% Similarity=0.311 Sum_probs=161.0
Q ss_pred HHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeec
Q 002820 440 RANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSF 519 (876)
Q Consensus 440 ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~ 519 (876)
++..+|.+. .+|+.+.|+..++|..-++.|.+.|..+||+..|+.--..+....- ++ | -.......+.|
T Consensus 16 ~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vt-d~-------i--~a~~~ersL~y 84 (502)
T KOG0454|consen 16 SAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVT-DK-------I--LARASERSLVY 84 (502)
T ss_pred hhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccc-hH-------H--HHhhhhhceee
Confidence 455566554 5899999999999999999999999999999999876544321100 00 0 00011234566
Q ss_pred CCCccc--ccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee-EEEecCcHHHHHHHHHcCcHHHHHhc
Q 002820 520 HGQPAE--LKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK-TSLAPGSGVVTKYLLQSGLQKYLNEQ 596 (876)
Q Consensus 520 ~g~~~~--l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vk-t~vaPGS~~V~~~l~~~Gll~~L~~a 596 (876)
+|.... +.--.++-+|||||||.+.+|++.||+++ +|.|+.-.+| .+++|||+.|....+.+||.++|.++
T Consensus 85 mGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 85 MGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred ccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 765432 22335678999999999999999999999 9999987777 78999999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002820 597 GFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (876)
Q Consensus 597 Gf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 668 (876)
||++...||..|.|+........|.| -+|+|||||||+|...+. +|+||.+.+|.++.|+.
T Consensus 159 gF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~ 219 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHD 219 (502)
T ss_pred ceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhccccccc
Confidence 99999999999999875554555554 389999999999998765 99999999999999975
No 38
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=99.44 E-value=4.2e-14 Score=138.96 Aligned_cols=77 Identities=27% Similarity=0.232 Sum_probs=62.2
Q ss_pred eecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCccccccccccchhhhhhhcCCCCCCceEEcCCCc
Q 002820 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (876)
Q Consensus 772 ~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge 851 (876)
|+.++||||||||||+ ||++||+.|+ ...=+| ++..|... |+.+ ..+|.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~R~~l~~--------------is~~~~--~~a~n~~~-~~~~-~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKYRGHLDN--------------ISNNLL--IGAINAEN-GKAN-SVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------ccccccCHHH--------------HHHHHh--hhhhhhhc-cccc-cccccCCCc
Confidence 4678999999999998 8999876655 222233 44567775 5554 689999999
Q ss_pred eeCHHHHHHHHHHcCCeEEEEecC
Q 002820 852 KLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 852 ~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
.+++|++|++||++|+||||+||-
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~ 77 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDE 77 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccC
Confidence 999999999999999999999984
No 39
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=98.96 E-value=1.3e-10 Score=113.03 Aligned_cols=79 Identities=33% Similarity=0.213 Sum_probs=75.8
Q ss_pred HHHHHcCCCcccCcccccccCCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEec
Q 002820 796 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLG 874 (876)
Q Consensus 796 ~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~ 874 (876)
+||+.+|+...++|+|+.||+||++|.||||+|.++.|.|..+..++.+.+.++++.+++++++.+|++++.+++|+||
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g 81 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGG 81 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECC
Confidence 5889999999999999999999999999999999999999998899999999999999999999999999999999985
No 40
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.64 E-value=0.031 Score=64.18 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=59.3
Q ss_pred cEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002820 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (876)
Q Consensus 530 ~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GC 605 (876)
+|+.++|| |=--|.+.++..|.+| +|+++++.++++|. -|+.|+..+.+.|+.+.|+++|..|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 46677775 7778899999999999 89999999888776 578899999999999999999999997655
No 41
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=94.33 E-value=0.045 Score=53.29 Aligned_cols=16 Identities=69% Similarity=1.105 Sum_probs=14.6
Q ss_pred eecCCccccccCCCCC
Q 002820 772 NFGDSITTDHISPAGS 787 (876)
Q Consensus 772 ~lGD~iTTDHISPAG~ 787 (876)
++||+|+||||.|++.
T Consensus 1 ~~gdnidTD~IiP~~~ 16 (121)
T cd01579 1 KVGDNITTDHIMPAGA 16 (121)
T ss_pred CCCCcCChhhcCCCCc
Confidence 5899999999999984
No 42
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=93.42 E-value=0.029 Score=51.84 Aligned_cols=15 Identities=67% Similarity=0.997 Sum_probs=14.0
Q ss_pred eecCCccccccCCCC
Q 002820 772 NFGDSITTDHISPAG 786 (876)
Q Consensus 772 ~lGD~iTTDHISPAG 786 (876)
+++|+|||||||||+
T Consensus 1 ~~~~~~~td~~~p~~ 15 (88)
T cd00404 1 KVAGNITTDHISPAG 15 (88)
T ss_pred CcccccccccccCCC
Confidence 479999999999998
No 43
>COG1679 Predicted aconitase [General function prediction only]
Probab=92.57 E-value=0.31 Score=55.43 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=56.6
Q ss_pred cEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002820 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (876)
Q Consensus 530 ~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GC 605 (876)
.++..+|| |---|.+.++..|.+| +|++-++.+.++|. -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 45567776 6777899999999999 78887777777665 689999999999999999999999997543
No 44
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=89.81 E-value=0.29 Score=60.63 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.7
Q ss_pred CceEEeeecCCccccccCCCCC
Q 002820 766 DAYCLLNFGDSITTDHISPAGS 787 (876)
Q Consensus 766 ~a~vL~~lGD~iTTDHISPAG~ 787 (876)
..+| .|+||+|+|||||||+.
T Consensus 167 ~g~V-~KvgdnInTD~I~Pa~~ 187 (835)
T PRK09238 167 TVTV-FKVTGETNTDDLSPAPD 187 (835)
T ss_pred EEEE-EEeCCCCchhccCCccc
Confidence 4678 89999999999999994
No 45
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=87.97 E-value=1.1 Score=51.54 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=55.9
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 002820 531 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG 610 (876)
Q Consensus 531 V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiG 610 (876)
+++++| .|=--|.+.++.-|++| +|+++++.++++|. -|+.|+ +.+.|+.+.++++|+.|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556777 57777899999999999 89777666666655 466676 99999999999999999997777 663
No 46
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=74.25 E-value=1.4 Score=45.04 Aligned_cols=15 Identities=60% Similarity=0.904 Sum_probs=14.0
Q ss_pred eeecCCccccccCCC
Q 002820 771 LNFGDSITTDHISPA 785 (876)
Q Consensus 771 ~~lGD~iTTDHISPA 785 (876)
.++||+|.||||.||
T Consensus 5 ~~~gdnIdTD~I~P~ 19 (163)
T PRK00439 5 WKFGDNIDTDVIIPA 19 (163)
T ss_pred EEeCCCCchhhCChH
Confidence 679999999999997
No 47
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=70.09 E-value=2.3 Score=42.28 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=21.0
Q ss_pred eeecCCccccccCCCCCCCCCChHHHHHH
Q 002820 771 LNFGDSITTDHISPAGSIHKDSPTAKYLL 799 (876)
Q Consensus 771 ~~lGD~iTTDHISPAG~I~~~s~ag~yL~ 799 (876)
+++||+|.||+|+|+.-....+...++.+
T Consensus 1 ~~~gddIdTD~i~P~~y~~~~~~~~~ha~ 29 (131)
T cd01576 1 FKVPGETNTDDLSPAPDAWSRPDIPLHAL 29 (131)
T ss_pred CcCCCCCchhcccChhhcCCcchHHHHHh
Confidence 47899999999999886544444454433
No 48
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=70.05 E-value=1.7 Score=44.21 Aligned_cols=15 Identities=47% Similarity=0.815 Sum_probs=13.9
Q ss_pred eeecCCccccccCCC
Q 002820 771 LNFGDSITTDHISPA 785 (876)
Q Consensus 771 ~~lGD~iTTDHISPA 785 (876)
.++||+|.||||-|+
T Consensus 4 ~~~gdnIdTD~I~P~ 18 (156)
T TIGR02084 4 HKYGDNVDTDVIIPA 18 (156)
T ss_pred EEcCCCccHhhccHH
Confidence 679999999999997
No 49
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=60.26 E-value=3.5 Score=41.95 Aligned_cols=15 Identities=53% Similarity=0.906 Sum_probs=13.8
Q ss_pred eeecCCccccccCCC
Q 002820 771 LNFGDSITTDHISPA 785 (876)
Q Consensus 771 ~~lGD~iTTDHISPA 785 (876)
.++||+|.||||-|+
T Consensus 4 ~~~gdnIdTD~IiP~ 18 (154)
T TIGR02087 4 WKFGDDIDTDEIIPG 18 (154)
T ss_pred EEcCCCcchhhCcHH
Confidence 579999999999987
No 50
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=56.59 E-value=4.7 Score=41.53 Aligned_cols=15 Identities=53% Similarity=0.919 Sum_probs=14.0
Q ss_pred eeecCCccccccCCC
Q 002820 771 LNFGDSITTDHISPA 785 (876)
Q Consensus 771 ~~lGD~iTTDHISPA 785 (876)
.++||+|.||||-||
T Consensus 5 ~~~gdnIdTD~IiPa 19 (166)
T PRK14023 5 WKFGDNINTDDILPG 19 (166)
T ss_pred EEcCCCcchhhcchH
Confidence 679999999999997
No 51
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=53.94 E-value=5.4 Score=43.53 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=18.6
Q ss_pred CceEEeeecCCccccccCCCCCC
Q 002820 766 DAYCLLNFGDSITTDHISPAGSI 788 (876)
Q Consensus 766 ~a~vL~~lGD~iTTDHISPAG~I 788 (876)
..|| .++||+|.||||-||.-.
T Consensus 70 ~Grv-~k~gDNIdTD~IiPa~~l 91 (246)
T PLN00072 70 HGLC-FVVGDNIDTDQIIPAEYL 91 (246)
T ss_pred EEeE-EEeCCCcchhhcccHHHh
Confidence 3577 589999999999999854
No 52
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=35.48 E-value=23 Score=32.51 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=26.0
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 535 AITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 535 ~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+|++|..|.-..+ +||+.|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 6899999877664 578889999999999887
No 53
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.89 E-value=43 Score=33.19 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=27.4
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+++||+|..|=---.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6889999998655555 77888899999999888
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=31.60 E-value=26 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.7
Q ss_pred CcCCceEEeeecCCccccccCCCCC
Q 002820 763 GVKDAYCLLNFGDSITTDHISPAGS 787 (876)
Q Consensus 763 ~i~~a~vL~~lGD~iTTDHISPAG~ 787 (876)
.|+ .+|. ++||+|-||+||||--
T Consensus 166 ~i~-g~V~-k~gddinTD~i~Pa~~ 188 (844)
T TIGR00117 166 KIT-VTVF-KVTGETNTDDLSPAPD 188 (844)
T ss_pred heE-EEEE-EeCCCCchhccCChhh
Confidence 354 4665 8999999999999874
No 55
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=30.11 E-value=35 Score=33.92 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.5
Q ss_pred CCCChhhhccc---cCCCeeEEEEeccCCCC
Q 002820 613 GDLDESVASTI---TDNDIVAAAVLSGNRNF 640 (876)
Q Consensus 613 g~l~~~~~~~i---~~~~lv~~aVsSgNRNF 640 (876)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 56777777766 45677888899999999
No 56
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=25.70 E-value=38 Score=33.35 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=24.9
Q ss_pred cEEeccCcccccCCCCCCChhhhcccc---CCCeeEEEEeccCCCC
Q 002820 598 FHIVGYGCTTCIGNSGDLDESVASTIT---DNDIVAAAVLSGNRNF 640 (876)
Q Consensus 598 f~i~~~GCg~CiGnsg~l~~~~~~~i~---~~~lv~~aVsSgNRNF 640 (876)
|.++.|.=+..-+ .+.+++.+.+-+. ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4444444333333 3347788877776 5566677789999999
No 57
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=25.48 E-value=22 Score=33.35 Aligned_cols=14 Identities=64% Similarity=0.971 Sum_probs=12.8
Q ss_pred eecCCccccccCCC
Q 002820 772 NFGDSITTDHISPA 785 (876)
Q Consensus 772 ~lGD~iTTDHISPA 785 (876)
++||+|-||||-|+
T Consensus 1 ~~gd~idTD~i~p~ 14 (91)
T cd01577 1 LFGDNIDTDQIIPA 14 (91)
T ss_pred CCCCccchhhcchH
Confidence 57999999999996
No 58
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=24.24 E-value=61 Score=31.47 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.7
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+.+|++|..|.-.. .+||+.|.+.|.+.|.+++
T Consensus 5 ivaVtacp~GiAht-~lAAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 5 LVAVTACVSGVAHT-YMAAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEeeCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 67899999987666 4588889999999999887
No 59
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=20.71 E-value=44 Score=35.56 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=23.2
Q ss_pred ceEEeeecCCccccccCCCCCCCC--CChHHHHHHH
Q 002820 767 AYCLLNFGDSITTDHISPAGSIHK--DSPTAKYLLE 800 (876)
Q Consensus 767 a~vL~~lGD~iTTDHISPAG~I~~--~s~ag~yL~~ 800 (876)
.+++.+.||+|.||+|-||--... ..-.|+|+.+
T Consensus 9 G~~~~l~~dnIDTD~IiPa~fl~~~~~~~l~~~~f~ 44 (200)
T PRK01641 9 GLAVPLDRANVDTDQIIPKQFLKRITRTGFGKGLFD 44 (200)
T ss_pred EEEEEcCCCCCChhhcchHhHcCcCCHHHHHHhhhc
Confidence 467666699999999999864322 2345556554
Done!