Query 002820
Match_columns 876
No_of_seqs 316 out of 2106
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 02:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 6E-228 2E-232 1991.1 55.4 769 103-875 2-771 (888)
2 1c96_A Mitochondrial aconitase 100.0 8E-155 3E-159 1355.6 45.9 587 158-875 34-635 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 1E-101 4E-106 910.4 40.3 453 135-717 343-843 (865)
4 1l5j_A Aconitate hydratase 2; 99.3 1.7E-14 5.9E-19 171.6 -12.3 129 638-787 47-187 (865)
5 2hcu_A 3-isopropylmalate dehyd 98.5 2E-08 7E-13 103.4 0.8 74 747-847 4-80 (213)
6 1v7l_A 3-isopropylmalate dehyd 89.4 0.13 4.6E-06 51.0 2.1 17 770-786 7-23 (163)
7 2pkp_A Homoaconitase small sub 83.1 0.32 1.1E-05 48.5 1.0 17 770-786 7-23 (170)
8 3vba_A Isopropylmalate/citrama 72.4 0.96 3.3E-05 45.5 0.8 19 767-786 7-25 (176)
9 3h5j_A 3-isopropylmalate dehyd 69.6 1 3.6E-05 45.0 0.3 23 764-786 9-31 (171)
10 2r4q_A Phosphotransferase syst 55.4 9.8 0.00033 35.3 4.0 33 533-566 5-37 (106)
11 2r48_A Phosphotransferase syst 53.9 10 0.00034 35.2 3.8 33 533-566 5-37 (106)
12 2kyr_A Fructose-like phosphotr 44.9 13 0.00046 34.6 3.1 33 533-566 8-40 (111)
13 2m1z_A LMO0427 protein; homolo 40.9 17 0.00058 33.7 3.1 33 533-566 5-37 (106)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=6.2e-228 Score=1991.09 Aligned_cols=769 Identities=60% Similarity=1.030 Sum_probs=733.6
Q ss_pred CchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeec
Q 002820 103 HPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKP 182 (876)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI~~~p 182 (876)
+||...++.|...+ +.|+||+|+++++..+++|||||||||||+||||||+.+++++|+++++|..+...+.+|.|+|
T Consensus 2 ~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CchhhhhcccCCCC--ceeEEEEhHHccccchhhCCchHHHHHHHHHhccCCcchhHHHHHHHhcccccCCCCCEEEEec
Confidence 68877777887664 4799999999987678999999999999999999999999999999999977666678999999
Q ss_pred ceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhc
Q 002820 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (876)
Q Consensus 183 drVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~ 262 (876)
|||+|||+||+|+++||++||++++++|.||+|+||.+||++++||+||++.++..++..+|+.+||+||+|||.||+|+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ccccccceeeCCCCceeccccccccceeeeccCCccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecC
Q 002820 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (876)
Q Consensus 263 ~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 342 (876)
+++|+||+|+|||+|||||||+||||+|||.++|+++|||||||||||||+||||+|||||||+|+|++|+||++||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHhccCCCCCCCCCCCcceehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHH
Q 002820 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (876)
Q Consensus 343 evVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL 422 (876)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|+|||+||||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHhhccccCCCCC-CCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccC
Q 002820 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (876)
Q Consensus 423 ~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D-~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~ 501 (876)
+.|||++++++++|+|++++++|++.. +| ++|+|+++++||||+|||+||||++|||++||++++++|.+++.++++.
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l~-~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDFN-DPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCTT-CGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HhcCCchHHHHHHHHHHHHHHHHhccC-CCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhccccc
Confidence 999999988999999999999997642 34 8999999999999999999999999999999999999988777665443
Q ss_pred CCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002820 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (876)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~ 581 (876)
+|+..+.+.+.+.++++|+|+++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred ccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHH
Confidence 33321111110124577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHH
Q 002820 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (876)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA 661 (876)
+||+++||+++|+++||+|++|||++||||+++++++++++|.+||+++++|||+||||+||||+..+++|||||+||||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCCCCccccCCC
Q 002820 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPN 741 (876)
Q Consensus 662 ~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~ 741 (876)
|||+|+|+||+++||||.++||++|||+||||+.+||++++++.+++++|.+.|..++.+++.|+.++++++++|+||++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHhcCeeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCcccc
Q 002820 742 STYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVM 821 (876)
Q Consensus 742 Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM 821 (876)
||||++||||++|+.+|+++++++++|+|+++||+||||||||||+|+++||||+||+++||.++|||||||||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred cccccCCCCccccccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 822 ARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 822 ~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
+||||+|+|++|+|++ ++||+|+|+|+|+.++|||+|++||++|+|+||+||.
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~ 771 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGK 771 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhccccccccccccc-ccCCceeecCCCccccchhhHHHHHhcCCceEEECCC
Confidence 9999999999999996 8999999999999999999999999999999999984
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=8e-155 Score=1355.56 Aligned_cols=587 Identities=30% Similarity=0.453 Sum_probs=518.6
Q ss_pred cHHHHHHHHhcccCCC------C-cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCC
Q 002820 158 KKEDVEKIIDWENSAP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSV 230 (876)
Q Consensus 158 ~~~~iekil~~~~~~~------~-~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv 230 (876)
.+|+.|||++.+.... . +.+|.++||||++||+|++++++||++ +|.++ +.+|.++++||++
T Consensus 34 ~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-------~G~~~----v~~P~~~~~DH~v 102 (753)
T 1c96_A 34 PLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-------SGLPK----VAVPSTIHCDHLI 102 (753)
T ss_dssp CCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-------HTCSS----CSSCEEEECCSSC
T ss_pred CCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-------hCCCC----CCCCCceecCCCC
Confidence 3678999998775432 2 336999999999999999999999965 38775 4567789999999
Q ss_pred CCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCC
Q 002820 231 QVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 309 (876)
Q Consensus 231 ~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSH 309 (876)
|++..+..+ +..++.+|.|+|+||+|++++| ||+|+|||+||||||++|+ +++|| ++||||||
T Consensus 103 ~~~~~~~~d-----~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSH 166 (753)
T 1c96_A 103 EAQLGGEKD-----LRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSH 166 (753)
T ss_dssp CBSSCHHHH-----HHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTT
T ss_pred CCCCCcccc-----hhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEeccc----------ccCCCcEEecCCCC
Confidence 999754333 5678999999999999999999 8999999999999999995 45897 79999999
Q ss_pred CcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccC
Q 002820 310 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGE 389 (876)
Q Consensus 310 Ttm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~ 389 (876)
|||+||||+|||||||+|++++|+||+|+|++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++
T Consensus 167 T~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~ 246 (753)
T 1c96_A 167 TPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDS 246 (753)
T ss_dssp GGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGG
T ss_pred CCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCce
Q 002820 390 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVE 469 (876)
Q Consensus 390 LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~ve 469 (876)
||+++|||||||++|+|||+|+||+|++|++||+.+||.+ .++++++|++ +| .+|++|+|+++++||||+||
T Consensus 247 LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~le 318 (753)
T 1c96_A 247 ISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSELK 318 (753)
T ss_dssp SCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGCC
T ss_pred CCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---hc----cCCCCCceeEEEEEEccccc
Confidence 9999999999999999999999999999999999999987 5788888876 44 46889999999999999999
Q ss_pred eeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHH
Q 002820 470 PCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVML 549 (876)
Q Consensus 470 P~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~ 549 (876)
|+||||++|||++||++++..+.+ ++++ -+|++||||||||||++|++
T Consensus 319 P~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~Dl~- 366 (753)
T 1c96_A 319 PHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYEDMG- 366 (753)
T ss_dssp CEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHHHH-
T ss_pred eeecCCCCCcceeEhHHhhhhHhh--------------------------cCCc-----cceEEEEEecCCCCCHHHHH-
Confidence 999999999999999999865432 1122 15899999999999999955
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCee
Q 002820 550 GAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIV 629 (876)
Q Consensus 550 aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv 629 (876)
+|+.|+|+|+++|++.+ ||++|+|||++|++||+++||+++|+++||+|++|||++||||+++.. + ..++-
T Consensus 367 ~AA~ilkga~~~~v~~~--V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~----~~~~~- 437 (753)
T 1c96_A 367 RSAAVAKQALAHGLKCK--SQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--I----KKGEK- 437 (753)
T ss_dssp HHHHHHHHHHTTTCCCS--SEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--S----CTTCC-
T ss_pred HHHHHhccHhhcCCCCC--ceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCcc--c----ccCCc-
Confidence 55567799998877554 999999999999999999999999999999999999999999998632 1 11221
Q ss_pred EEEEeccCCCCCCCCC-CCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCc
Q 002820 630 AAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLP 708 (876)
Q Consensus 630 ~~aVsSgNRNFeGR~g-p~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~ 708 (876)
.++|||+||||+|||| ...+.+|||||+|||||||+|+|+||+.+||| .++||++|||+| |+.+|+++
T Consensus 438 ~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~-------- 506 (753)
T 1c96_A 438 NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR-------- 506 (753)
T ss_dssp EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------
T ss_pred ceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCCCeeeecC--Cccchhhh--------
Confidence 1478999999999994 44468999999999999999999999999999 899999999999 99998753
Q ss_pred hhhhhhcccccCCCCCcccccCCC-CCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCC
Q 002820 709 DMFKSTYEAITKGNPTWNQLSVPA-SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGS 787 (876)
Q Consensus 709 ~~f~~~y~~i~~~~~~w~~l~~~~-~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~ 787 (876)
++|. .+++.|+.++.+. +..|.|+++||||+.||||++ |+..+++++|+|+++||+||||||||||.
T Consensus 507 ~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG~ 574 (753)
T 1c96_A 507 AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAGP 574 (753)
T ss_dssp SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCGG
T ss_pred hhcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCC-----CCccccccceEEEeccCCcccccccccch
Confidence 2332 4678899887665 679999999999999999974 66779999999999999999999999994
Q ss_pred CCCCChHHHHHHHcCCCcccCcccccccCCccccccccccchhhhhhhcC--CCCCC---ceEEcCCCceeCHHHHHHHH
Q 002820 788 IHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP---KTVHVPTGEKLSVFDAAMVK 862 (876)
Q Consensus 788 I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RGtfaNir~~N~l~~--~~~G~---~t~~~p~ge~~~v~daA~~Y 862 (876)
||++ ||||+|++ .|.|.. +.+|| +|+|+|+||.++|||+|++|
T Consensus 575 ---------~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y 622 (753)
T 1c96_A 575 ---------WLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYY 622 (753)
T ss_dssp ---------GGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHH
T ss_pred ---------hhcc----------------------ccchhhhh-hhhccccccccCCCcceeEEecCCcccccHHHHHHH
Confidence 8877 46999999 888874 34555 99999999999999999999
Q ss_pred HHcCCeEEEEecC
Q 002820 863 IQECWSWYNYLGW 875 (876)
Q Consensus 863 ~~~g~p~vv~~~~ 875 (876)
|++|+++||+||.
T Consensus 623 ~~~g~~~iivag~ 635 (753)
T 1c96_A 623 KQHGIRWVVIGDE 635 (753)
T ss_dssp HHHTCCEEEECCS
T ss_pred HHhCCCeEEEecC
Confidence 9999999999984
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.3e-101 Score=910.40 Aligned_cols=453 Identities=23% Similarity=0.340 Sum_probs=386.0
Q ss_pred CCCCceeeehhhhhhcccCC---------------ccccHHHHHHHHhcccCC---CCcceEeeecceeeeecCccHHHH
Q 002820 135 EKLPYSIRILLESAIRNCDN---------------FQVKKEDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAV 196 (876)
Q Consensus 135 ~~lP~sirvllE~~~R~~~~---------------~~~~~~~iekil~~~~~~---~~~~eI~~~pdrVl~qD~TG~pai 196 (876)
..+||-++-.|-.-.|..-| ....+|++|||++++.+. ..+..|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred ChhhhhhcchHHHHHHHHcCCCchhhccCCCCCCCCCCCccHHHHHHHHHhCCCccCCCCEEEEEeeEEEEeccCcHHH-
Confidence 55777776666444443211 122467889999887552 34567999999999999999985
Q ss_pred HHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCC
Q 002820 197 VDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS 276 (876)
Q Consensus 197 vdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~ 276 (876)
|++++++|.+ +++++. |..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHcCCC--cCCCCe-EEEECCCCCcCCC---------HHHHHHHHHHHHHHHHcCC-------eEeCCCC
Confidence 6677788865 666665 5668999888763 3456889999999998886 4689999
Q ss_pred ceeccccccccceeeeccCCccccCe-EeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCC
Q 002820 277 GIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHN 355 (876)
Q Consensus 277 GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~ 355 (876)
|||||++.| +++||+ +|||||||||+|||| +|.|++|++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~~~Glg---~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHGG-----------GCCTTCEEEESSTTCCCSSSEE---CCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred ceeeeeecc-----------cccccceEEeCCCCccccccce---eCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCC
Confidence 999998644 679975 699999999999764 57799999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHhcC------------ccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCC-hHHHHHH
Q 002820 356 GVTATDLVLTVTQMLRKHG------------VVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYL 422 (876)
Q Consensus 356 GVtAkDlvL~I~~~Lr~~G------------vvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~D-e~T~~YL 422 (876)
|||+|||||+|++.++++| ++||+||| +||++||+++|||||||++|+|||+|+||+| ++|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcccccccccCcccceeeEEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHH
Confidence 9999999999998887433 47999999 5799999999999999999999999999977 7789999
Q ss_pred Hh----------cCCC-----hhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCcccccCc
Q 002820 423 KL----------TGRS-----DETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKE 486 (876)
Q Consensus 423 ~~----------tgR~-----~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~lse 486 (876)
+. +||. +++++.+++|++++++| .+|++|+|+++++||||+| ||+||+|++|||++|+++
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse 696 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSA 696 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGG
T ss_pred HhhhhhhhhhhccCCccchhHHHHHHHHHHHHhcccee----ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhh
Confidence 98 6874 35677889999999988 4689999999999999999 899999999999999999
Q ss_pred cccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 487 MKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+++. .|+++|||||||+ ++|++.||.+| ||++++
T Consensus 697 ~~~~---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~ 730 (865)
T 1l5j_A 697 VQGE---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQ 730 (865)
T ss_dssp TTTC---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSC
T ss_pred hccc---------------------------------------ccceEEEecCCCC-HHHHHHHHHHH------cCcccC
Confidence 8631 1458999999877 99999888888 788899
Q ss_pred CceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCC
Q 002820 567 PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHP 646 (876)
Q Consensus 567 p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp 646 (876)
+.||++|+|||++|++||+++|++++|+++||+|.+||||+||||++.+ .+|++ ++||+||||+||||+
T Consensus 731 ~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~ 799 (865)
T 1l5j_A 731 LPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGT 799 (865)
T ss_dssp CSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSST
T ss_pred CCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCcC--------CCCCE---EEecCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999998654 56675 579999999999996
Q ss_pred CCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhccc
Q 002820 647 LTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEA 717 (876)
Q Consensus 647 ~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~ 717 (876)
. ..+|||||++||||||+|+| |+.+|+.+++++.++|. .++|..
T Consensus 800 ~-~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~--~~~~~~ 843 (865)
T 1l5j_A 800 G-ANVFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTA--VDTYRY 843 (865)
T ss_dssp T-CEEEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTH--HHHTCC
T ss_pred C-cceEECCHHHHHHHHhCCcC------------------------CCHHHHHHHHHhhcCCc--cccccc
Confidence 5 58999999999999999999 88999999999988884 555654
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=99.26 E-value=1.7e-14 Score=171.57 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=108.6
Q ss_pred CCCCCCCCCC------CCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCee-eccCCCCChHHHH----HHHHh-c
Q 002820 638 RNFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSV-YFKDIWPTTEEIA----EVVQS-S 705 (876)
Q Consensus 638 RNFeGR~gp~------~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v-~l~diwPs~~Ei~----~~~~~-~ 705 (876)
.=|++|+.|. ++++||+|| |.+++.++.|+.++.+++||+...|..| +|.||| +.+||. +.+++ .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhh
Confidence 4588999999 889999999 7799999999999999999999999999 899999 556666 67766 5
Q ss_pred CCchhhhhhcccccCCCCCcccccCCCCCccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCC
Q 002820 706 VLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPA 785 (876)
Q Consensus 706 v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPA 785 (876)
+-.++|.++|+....||+.|+++ ++.|.+.+.|..+|+.- +.|++ ++ .++||+|.|||||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~v-~~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-TV-FKVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-EE-EEEEEEEEHHHHSCG
T ss_pred ccHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCCC----------ceEEE-EE-EecCCCCchhccCch
Confidence 66899999999999999999965 89999887666555542 34554 44 667999999999998
Q ss_pred CC
Q 002820 786 GS 787 (876)
Q Consensus 786 G~ 787 (876)
.-
T Consensus 186 ~~ 187 (865)
T 1l5j_A 186 PD 187 (865)
T ss_dssp GG
T ss_pred hh
Confidence 84
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=98.48 E-value=2e-08 Score=103.42 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCCCc--CCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCCccccccc
Q 002820 747 EPPYFKDMTMDPPGAHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARG 824 (876)
Q Consensus 747 ~ppfF~~~~~~~~~~~~i--~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRrgN~evM~RG 824 (876)
-.|||++|++.....+.+ ..++++.+.||+|+||||+|| +||+. +.+.+ +.|+
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGG
T ss_pred cccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHH-------------HHHH
Confidence 358999998877666555 577999999999999999998 58864 44443 5789
Q ss_pred cccchhhhhhhcCCCCC-CceEEc
Q 002820 825 TFANIRLVNKLLNGEVG-PKTVHV 847 (876)
Q Consensus 825 tfaNir~~N~l~~~~~G-~~t~~~ 847 (876)
+|+|+|++|+ +|+++ +|+.+.
T Consensus 59 ~f~~~r~~~~--~g~~~p~f~~~~ 80 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPDFIFNQ 80 (213)
T ss_dssp TTHHHHBSST--TCCBCTTSGGGS
T ss_pred Hhhccccccc--CCCCCCCccccc
Confidence 9999999988 56665 355443
No 6
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=89.42 E-value=0.13 Score=50.98 Aligned_cols=17 Identities=47% Similarity=0.909 Sum_probs=15.6
Q ss_pred EeeecCCccccccCCCC
Q 002820 770 LLNFGDSITTDHISPAG 786 (876)
Q Consensus 770 L~~lGD~iTTDHISPAG 786 (876)
++++||+||||||+||.
T Consensus 7 ~~~~~dnidTD~IiPa~ 23 (163)
T 1v7l_A 7 VWKFGDDISTDEITPGR 23 (163)
T ss_dssp EEECCSCCBHHHHSCTT
T ss_pred EEEcCCCCChhccchHH
Confidence 67999999999999985
No 7
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=83.12 E-value=0.32 Score=48.53 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=15.6
Q ss_pred EeeecCCccccccCCCC
Q 002820 770 LLNFGDSITTDHISPAG 786 (876)
Q Consensus 770 L~~lGD~iTTDHISPAG 786 (876)
+.++||+|+||||+||.
T Consensus 7 v~~~~dnIdTD~IiPa~ 23 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPGP 23 (170)
T ss_dssp EEECCSCCBHHHHSCGG
T ss_pred EEECCCCCChhhcChHH
Confidence 68899999999999975
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=72.38 E-value=0.96 Score=45.46 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=16.3
Q ss_pred ceEEeeecCCccccccCCCC
Q 002820 767 AYCLLNFGDSITTDHISPAG 786 (876)
Q Consensus 767 a~vL~~lGD~iTTDHISPAG 786 (876)
.+++ ++||+|+||+|.||-
T Consensus 7 g~v~-~~gdnIdTD~IiPa~ 25 (176)
T 3vba_A 7 GRVW-KFGNNVDTDAILPAR 25 (176)
T ss_dssp EEEE-ECCSSCBHHHHSCGG
T ss_pred EEEE-EeCCCcchhhcCcHH
Confidence 4665 889999999999984
No 9
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=69.61 E-value=1 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.6
Q ss_pred cCCceEEeeecCCccccccCCCC
Q 002820 764 VKDAYCLLNFGDSITTDHISPAG 786 (876)
Q Consensus 764 i~~a~vL~~lGD~iTTDHISPAG 786 (876)
....+++.+.||+|.||||-||.
T Consensus 9 ~~~G~~~~l~~dnIdTD~IiPa~ 31 (171)
T 3h5j_A 9 THSGIGVPLRRSNVDTDQIIPAV 31 (171)
T ss_dssp EEEEEEEEECCCSCCHHHHSCGG
T ss_pred EEEEEEEEccCCccCcccCCchh
Confidence 34558888889999999999987
No 10
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=55.37 E-value=9.8 Score=35.26 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=26.4
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+++||+|.+|---..| ||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 6789999999766655 78889899999999887
No 11
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=53.94 E-value=10 Score=35.19 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=27.5
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+++||+|.+|---.. .||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTy-mAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHTY-MAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 689999999966554 578889899999999887
No 12
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=44.86 E-value=13 Score=34.65 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=27.5
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+++||+|..|---.. .||+.|-+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHTy-MAAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHTF-MAAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHHH-HHHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 788999999866655 478888888989999887
No 13
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=40.88 E-value=17 Score=33.66 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=27.3
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
+++||+|..|--...| ||+.|-+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTym-AAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTYM-AAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 6789999998766654 77888888889999887
Done!