Query 002820
Match_columns 876
No_of_seqs 316 out of 2106
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 02:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002820.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002820hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b3ya2 c.83.1.1 (A:2-630) Iro 100.0 5E-197 3E-201 1678.0 44.8 628 103-732 2-629 (629)
2 d1acoa2 c.83.1.1 (A:2-528) Aco 100.0 2E-127 1E-131 1091.3 36.9 482 133-700 16-506 (527)
3 d1l5ja3 c.83.1.1 (A:373-862) A 100.0 1E-101 9E-106 875.8 28.1 432 158-701 9-471 (490)
4 d2b3ya1 c.8.2.1 (A:631-889) ro 100.0 1.1E-49 8.3E-54 416.4 10.4 141 734-875 2-142 (259)
5 d1acoa1 c.8.2.1 (A:529-754) Ac 99.9 1.1E-23 8.1E-28 216.0 6.3 108 736-875 1-108 (226)
6 d1v7la_ c.8.2.1 (A:) Isopropyl 94.6 0.0027 2E-07 60.4 -0.1 20 767-787 5-24 (162)
7 d2r4qa1 c.44.2.2 (A:171-273) F 64.9 2.5 0.00018 36.9 4.0 33 533-566 2-34 (103)
8 d2r48a1 c.44.2.2 (A:2-104) Man 42.6 9.1 0.00066 33.2 3.8 33 533-566 2-34 (103)
9 d1vc1a_ c.13.2.1 (A:) Anti-sig 15.1 1.9E+02 0.014 23.0 7.1 85 341-428 11-98 (110)
10 d2fy6a1 c.47.1.10 (A:33-175) P 14.3 69 0.005 26.9 4.1 95 601-704 31-138 (143)
No 1
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.6e-197 Score=1677.96 Aligned_cols=628 Identities=61% Similarity=1.053 Sum_probs=608.6
Q ss_pred CchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeec
Q 002820 103 HPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKP 182 (876)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~~~~~~eI~~~p 182 (876)
|||....++|+..+. .|+||+|++|++.++++|||||||||||+||||||..+++++|++|++|......+.||+|+|
T Consensus 2 ~~f~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~lP~s~rillEn~lr~~~~~~v~~~~i~~~~~~~~~~~~~~ei~f~p 79 (629)
T d2b3ya2 2 NPFAHLAEPLDPVQP--GKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (629)
T ss_dssp CTTGGGEEESCTTST--TCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CchHHHhhhcccCCC--CceEecHHHhcccCcccCCchHHHHHHHHHHhcCCCcCCHHHHHHHHhccccCCCCCeecccc
Confidence 799877788988764 689999999998899999999999999999999999999999999999987666677999999
Q ss_pred ceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhc
Q 002820 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (876)
Q Consensus 183 drVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~ 262 (876)
|||+||||||+|+++|||+|||+++++|+||.+|||.+||+|||||+||++++++++++++|+.+||+||.|||+||||+
T Consensus 80 ~rv~lqD~tg~~a~~dlaamrda~~~~g~dp~~i~p~~p~~lviDHsv~~~~~~~~~~~~~n~~~e~~rn~er~~fl~w~ 159 (629)
T d2b3ya2 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (629)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeecccCccHHHHHHHHHHHHHHhCCCccccCCCCcceEEECCCeEeccCCCchhhhhchhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeCCCCceeccccccccceeeeccCCccccCeEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecC
Q 002820 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (876)
Q Consensus 263 ~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 342 (876)
+++|+||+|||||+||||||||||||+||+.++|++|||+||||||||||+||||+|||||||+|+|++|+|||+||++|
T Consensus 160 ~~~~~~~~~~pPg~GI~HQvnlE~la~~v~~~~~~~~pdtlVGtDSHT~~~GalG~lg~GVGg~Eae~amlg~~~~~~vP 239 (629)
T d2b3ya2 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (629)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHHhhcccccccccchhhHHHHHHhcccccCCCCeEEeeeEEecCCCccccccccceecCcchHHHHHHHhCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHH
Q 002820 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (876)
Q Consensus 343 evVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL 422 (876)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++|++||
T Consensus 240 evvgv~L~G~L~~gVtakDliL~i~~~L~~~G~vgk~VEF~G~gi~~LS~~dRaTI~NMa~E~GAt~gifp~De~T~~YL 319 (629)
T d2b3ya2 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (629)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred ceEEEEEEeccCCCcchhHHHHHHHHHhccCCcceEEEEeccccccccCHHHhhhhhhcccccCceEEEEccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCC
Q 002820 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (876)
Q Consensus 423 ~~tgR~~~~i~~ve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~ 502 (876)
+.|||+++.++++++|.++|++|++...+|++|+|+++++||||+|||+||||++|||++||++++.+|.+++..+.+.+
T Consensus 320 ~~tgR~~~~~~~ve~y~~a~~l~~~~~~~d~da~Y~~vieiDLs~veP~VAgP~~P~d~v~l~e~~~~~~~~l~~~~~~~ 399 (629)
T d2b3ya2 320 VQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFK 399 (629)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTT
T ss_pred hhhcccccccchhhHHHHHHHhhhhccccccccCcceEEEEehhHceeecCCCCCccceeECCccCcChhhhhhhhhhhc
Confidence 99999999999999999999999987767889999999999999999999999999999999999999999999887777
Q ss_pred CCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002820 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (876)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~ 582 (876)
++..+.+.......+.+++..+.+.||+|++|||||||||||||+|+||++|||||+++|++++||||++|+|||++|++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~ia~IgSCTN~s~~dl~~AA~lLa~kaV~~Gl~v~p~Vk~~v~PGS~~V~~ 479 (629)
T d2b3ya2 400 GFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTY 479 (629)
T ss_dssp BCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHH
T ss_pred ccchhhhhhhhhhhhhhccccccccCCcEEEEEEecCCCCCcHHHHHHHHHHhhhhhhcCCcccceeeEEEeccchhhhH
Confidence 77776555555566777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHH
Q 002820 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 662 (876)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~ 662 (876)
||+++||+++|+++||+|++|||++||||+|+++++++++|.+||+++++|||+||||+|||||..++||||||+|||||
T Consensus 480 ~le~~Gl~~~L~~aGf~i~~~GC~~CiGnsGpl~~~~~~~i~~gdl~~~~V~S~NRNFeGR~g~~~~~~yLaSP~lVaA~ 559 (629)
T d2b3ya2 480 YLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAY 559 (629)
T ss_dssp HHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHH
T ss_pred HHHhCCchhhhhhceeEEecccccccCCCCCCCCcchhhhcccCCeeEeeecccCCCCCcCCCCCCCCeEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCccccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCchhhhhhcccccCCCCCcccccCCC
Q 002820 663 ALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA 732 (876)
Q Consensus 663 AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~ 732 (876)
||+|+|+||+++||||+|++|++|||+||||+.+||++++.++++|++|++.|.++++|+++|++|++|+
T Consensus 560 AiaG~I~id~~~eplg~~~~G~~V~L~diwPs~~Ei~~~~~~~v~~~~f~~~y~~v~~g~~~W~~l~~p~ 629 (629)
T d2b3ya2 560 AIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPS 629 (629)
T ss_dssp HHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCC
T ss_pred HhceeeecCCCcCCCccCCCCCEEecCCCCCCHHHHHHHHHhccChhhhHHHHHHhccCChhhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 2
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=1.7e-127 Score=1091.33 Aligned_cols=482 Identities=31% Similarity=0.479 Sum_probs=421.2
Q ss_pred CCCCCCceeeehhhhhhcccCCccccHHHHHHHHhcccC----C---CCcceEeeecceeeeecCccHHHHHHHHHHHHH
Q 002820 133 RIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENS----A---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDA 205 (876)
Q Consensus 133 ~~~~lP~sirvllE~~~R~~~~~~~~~~~iekil~~~~~----~---~~~~eI~~~pdrVl~qD~TG~paivdlaamrda 205 (876)
.+++||+.++++.|++-| .+|+.|||++.+.. . ..+.+|.++||||++||+|+++++.+|++|
T Consensus 16 ~y~~~~~~~~~~r~~l~r-------P~TL~EKI~~~Hl~~~~~~~~~~g~~~v~~~vDrv~~hD~T~~~a~~~l~~~--- 85 (527)
T d1acoa2 16 RYDLLEKNIDIVRKRLNR-------PLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISS--- 85 (527)
T ss_dssp CHHHHHHHHHHHHHHHCS-------CCCHHHHHHHTTBSCTTTCCCCTTTSEEEECCSEEEEEHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHhcCC-------CcCHHHHHHHHHhcccccCcccCCCceEEEecCEEEEEccchHHHHHHHHHc---
Confidence 478899999999999854 25688999887631 1 123468999999999999999999988654
Q ss_pred HHHcCCCCCccCCCCCEEEEecCCCCCCCCCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceecccccc
Q 002820 206 MNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 285 (876)
Q Consensus 206 ~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE 285 (876)
|.+ +..+ |.++++||+||++..+ .+|+..++.+|.++|.|++|.++.| ++.+++||+||||||++|
T Consensus 86 ----g~~-~~~~---p~~v~~DH~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~pg~GI~H~v~~E 151 (527)
T d1acoa2 86 ----GLP-KVAV---PSTIHCDHLIEAQLGG-----EKDLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILE 151 (527)
T ss_dssp ----TCS-SCSS---CEEEECCSSCCBSSCH-----HHHHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHH
T ss_pred ----CCC-CCCC---CCCEEeCCCcCCcccc-----ccchhHHHHHHHHHHHHHHHhhhhh-ccceeecCCceEEEEccc
Confidence 543 4544 4678999999998654 3457778889999999999999988 799999999999999999
Q ss_pred ccceeeeccCCccccC-eEeecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHH
Q 002820 286 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVL 364 (876)
Q Consensus 286 ~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL 364 (876)
++ ++|+ ++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||
T Consensus 152 ~~----------~~PG~~ivg~DSHT~t~GalGala~GvG~te~~~~~~t~~~~~~vPetv~v~l~G~l~~gvtakDviL 221 (527)
T d1acoa2 152 NY----------AYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVIL 221 (527)
T ss_dssp HT----------CCTTCEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHH
T ss_pred cc----------ccCCeEEecCCCCccccccccceeccCcHHHHHHHHhCCceeecCCcEEEEEEecCCCCCccHHHHHH
Confidence 54 5786 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 002820 365 TVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKM 444 (876)
Q Consensus 365 ~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~~tgR~~~~i~~ve~y~ka~~l 444 (876)
+|+++|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||.+.. .+++.|.+ .|
T Consensus 222 ~i~~~l~~~g~~g~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~gif~~D~~t~~yl~~~gr~~~~-~~~~~~~~--~l 298 (527)
T d1acoa2 222 KVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIA-NLADEFKD--HL 298 (527)
T ss_dssp HHHHHHCTTTTBTEEEEEESGGGGGSCHHHHHHHHHHGGGGTBSEEECCCCHHHHHHHHHTTCHHHH-HHHHHTGG--GS
T ss_pred HHHHHHhhcCCCceeEEEeccccceeccccccchhhccccccceeeEEeccHHHHHHHhhcCccchh-hcchhhhh--hc
Confidence 9999999999999999999999999999999999999999999999999999999999999997643 33333322 12
Q ss_pred cccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcc
Q 002820 445 FVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA 524 (876)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~ 524 (876)
.+|++|+|+++|+||||+|||+||+|++||+++|++++.....+
T Consensus 299 -----~~D~~A~Y~~~ieiDls~ieP~Va~P~~Pd~~~pv~e~~~~~~~------------------------------- 342 (527)
T d1acoa2 299 -----VPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVGSVAEK------------------------------- 342 (527)
T ss_dssp -----SCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHHHHHHH-------------------------------
T ss_pred -----ccccCCccceEEEEEhHhchhheecCCCCcceeeechhhhhhhh-------------------------------
Confidence 47999999999999999999999999999999999998754321
Q ss_pred cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 002820 525 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYG 604 (876)
Q Consensus 525 ~l~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~G 604 (876)
+..+++|++||||||||||++|+++||+ ++|+++++|++++ ||++|+|||++|++||+++||+++|+++||+|.+||
T Consensus 343 ~~~~~~Id~afIGSCTN~r~~Dl~~AA~-ilk~~~~~g~~~~--v~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~pg 419 (527)
T d1acoa2 343 EGWPLDIRVGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCK--SQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANA 419 (527)
T ss_dssp HTCCCBEEEEEECSTTSCSHHHHHHHHH-HHHHHHHTTCCCS--SEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSS
T ss_pred hccCceeeEeeeccccCCCchHHHHHHH-HHhhHhhcCCccc--cceEEecCcHHHHHHHHHCchHHHHHHcCcEEccCc
Confidence 1224569999999999999999999998 5689998887765 899999999999999999999999999999999999
Q ss_pred cccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCC-ceeecCHHHHHHHHHhCccccCCCCCCcccCCCC
Q 002820 605 CTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTR-ANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 683 (876)
Q Consensus 605 Cg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~-~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G 683 (876)
|++|+||++.. .+.+|+.. ++|||+||||+||||+..+ .+|||||+|||||||+|+|+|||++||| ++.+|
T Consensus 420 Cg~CiG~~~~~------~~~~ge~~-~~vsTsNRNF~GR~G~~~~a~~yLaSP~~vaA~Ai~G~It~dp~~d~l-~~~~g 491 (527)
T d1acoa2 420 CGPCIGQWDRK------DIKKGEKN-TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDG 491 (527)
T ss_dssp CGGGGTCBCCC------SSCTTCCE-EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBSSCCTTTCEE-ECTTS
T ss_pred chhhccCCccc------ccccCcCc-eEEEcCCCCCCcCCCCCCCcceEeCCHHHHHHHHhhceeecCCCcCcc-cCCCC
Confidence 99999986542 13455543 3589999999999987654 4699999999999999999999999999 89999
Q ss_pred CeeeccCCCCChHHHHH
Q 002820 684 KSVYFKDIWPTTEEIAE 700 (876)
Q Consensus 684 ~~v~l~diwPs~~Ei~~ 700 (876)
++|||+ ||+.+||++
T Consensus 492 ~~v~L~--~P~~~ei~~ 506 (527)
T d1acoa2 492 KKFKLE--APDADELPR 506 (527)
T ss_dssp CEEECC--CCCCCSSCS
T ss_pred CeeEec--CCChhhccc
Confidence 999999 999998854
No 3
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.2e-101 Score=875.82 Aligned_cols=432 Identities=21% Similarity=0.269 Sum_probs=354.0
Q ss_pred cHHHHHHHHhcccCC---CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCC
Q 002820 158 KKEDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDV 234 (876)
Q Consensus 158 ~~~~iekil~~~~~~---~~~~eI~~~pdrVl~qD~TG~paivdlaamrda~~~~G~dp~~inp~~pv~lviDHsv~~d~ 234 (876)
.+|++||||+.+.+. ..+..|.++||+|++||+|+++++..| +++|.+ ++||.. |.+++||++|+..
T Consensus 9 g~Tl~EKIl~~~~g~~~v~~G~~v~~~vD~v~~hD~t~p~~~~~~-------~~~g~~--~~~p~~-v~~~~DH~~p~~~ 78 (490)
T d1l5ja3 9 GFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDEL-------KDLACL--GFSADL-VMQSFCHTAAYPK 78 (490)
T ss_dssp CCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHHHHHH-------HHTTCC--SCCSSC-EEECCCSSSSSCC
T ss_pred CccHHHHHHHHhhCCCCCCCcCEEEEeCCEEEEecccHHHHHHHH-------HHcCCC--cCCccc-EEEEeCCCCCCCC
Confidence 467899999998763 245568899999999999999997655 345653 577775 7889999999875
Q ss_pred CCchhHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeccccccccceeeeccCCccccC-eEeecCCCCccc
Q 002820 235 TRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMI 313 (876)
Q Consensus 235 ~~~~~a~~~n~~~ef~rN~Ery~flkw~~~~f~~i~vvpPG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~ 313 (876)
. .++..+...++|.| .+ ++.+++|++|||||++.| +++|+ ++|||||||||+
T Consensus 79 ~--~~a~~~~~~r~fa~-------------~~-gi~~~~~~~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~~~ 131 (490)
T d1l5ja3 79 P--VDVNTHHTLPDFIM-------------NR-GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFP 131 (490)
T ss_dssp H--HHHHHHHHHHHHHH-------------TT-TCEECCTTSBCHHHHHGG-----------GCCTTCEEEESSTTCCCS
T ss_pred H--HHHHHHHHHHHHHH-------------Hc-CCeeecCCCceeeeeccc-----------ccCCCCeEEccCCCccch
Confidence 3 33334444444444 33 477889999999999866 56786 568999999998
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEE----------Ee
Q 002820 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVE----------FH 383 (876)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VE----------F~ 383 (876)
|| +|||||++|+|++|+||++||++||||+|+|+|+|++|||||||||+|++.|++.|+.+.++| |.
T Consensus 132 g~---~~~GvG~~e~~~al~tg~~~~~vPe~v~V~l~G~L~~gVtakDviL~i~~~l~~~G~~~~~~~~~~~~~~~~~~e 208 (490)
T d1l5ja3 132 IG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILE 208 (490)
T ss_dssp SS---EECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEE
T ss_pred hh---hhcccccchhHHHhccCeEEeeCCcEEEEEEeecCCCCCCccHHHHHHHHHHhccCceEEEEEccccceeeEEEE
Confidence 65 589999999999999999999999999999999999999999999999999999987655544 44
Q ss_pred cCcccCCChhhhhhhhccccccCcceeeeeCChHHHHHHH-----------hcCCChh-----HHHHHHHHHHHhhcccc
Q 002820 384 GDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLK-----------LTGRSDE-----TVAMVEGYLRANKMFVD 447 (876)
Q Consensus 384 GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T~~YL~-----------~tgR~~~-----~i~~ve~y~ka~~l~~~ 447 (876)
|+|+.+||+++|+|||||++|+||++++||+|++|..|+. .+++.+. .++.++.+.....++
T Consensus 209 ~~gi~~Ls~~~R~Ti~NMa~E~ga~~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 286 (490)
T d1l5ja3 209 IEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL-- 286 (490)
T ss_dssp EESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC--
T ss_pred eccccccChhhhhhhhhhhHHHhhCceeeecCcHHHHHHHhcccchhhhhhhhccchhhhhhhhhhhHHhhhcCcccc--
Confidence 6899999999999999999999999999999998765443 3333321 122233343333333
Q ss_pred CCCCCCCCcccEEEEEEcCCceeec-cCCCCCCcccccCccccchhhhhcccccCCCCCCCccccccceeeecCCCcccc
Q 002820 448 YNEPQQERVYSSYLELNLADVEPCI-SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAEL 526 (876)
Q Consensus 448 ~~~~D~~a~Y~~vieiDLs~veP~V-AgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l 526 (876)
.+|++|.|+++++|||++|+|.+ ++|+.|++++|++++.+
T Consensus 287 --~~D~~A~y~~~~~idls~l~p~~~~~p~~~d~~~~~~~~~g------------------------------------- 327 (490)
T d1l5ja3 287 --EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQG------------------------------------- 327 (490)
T ss_dssp --CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTT-------------------------------------
T ss_pred --cCCCCCCcCceeeecHHHhhhccccCCCchhhccchhhcCC-------------------------------------
Confidence 57999999999999999997555 78999999999998763
Q ss_pred cCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcc
Q 002820 527 KHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCT 606 (876)
Q Consensus 527 ~~g~V~iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg 606 (876)
..|++|||||||| +++|+++||++| +|++++++||++|+|||++|++||+++||+++|+++||+|++||||
T Consensus 328 --~~Id~v~IGSCTn-~~~dl~~aA~iL------~gkkv~~~V~~~V~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GCg 398 (490)
T d1l5ja3 328 --EKIDEVFIGSCMT-NIGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCS 398 (490)
T ss_dssp --CBCCEEEECSTTC-CHHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCG
T ss_pred --ceeEEEEeeccCC-CccHHHHHHHHh------hccccccceEEEecCCcHHHHHHHHHHHhhhHHHHCCeEECCccch
Confidence 1256899999999 999999999999 8999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCee
Q 002820 607 TCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSV 686 (876)
Q Consensus 607 ~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v 686 (876)
+||||++++. +|++ +|||+||||+||||+. ..+|||||++||||||+|+| +||--++ -
T Consensus 399 ~CiG~~~~l~--------~ge~---~vss~NRNF~GR~G~~-~~~yLaSP~~vaAsAi~G~i-----tdp~e~~-----~ 456 (490)
T d1l5ja3 399 LCMGNQARVA--------DGAT---VVSTSTRNFPNRLGTG-ANVFLASAELAAVAALIGKL-----PTPEEYQ-----T 456 (490)
T ss_dssp GGTCSSSCCC--------TTCE---EEESSSCCCTTSSSTT-CEEEECCHHHHHHHHHHSBC-----CCHHHHH-----H
T ss_pred hhhCcCCcCC--------CCCE---EEEecCCCCCCCCCCC-CCEEECCHHHHHHHHhcccC-----CCHHHHH-----H
Confidence 9999998873 4554 6899999999999986 46799999999999999999 4443222 1
Q ss_pred eccCCCCChHHHHHH
Q 002820 687 YFKDIWPTTEEIAEV 701 (876)
Q Consensus 687 ~l~diwPs~~Ei~~~ 701 (876)
|+.++|++..|+.++
T Consensus 457 ~~~~~~~~~~~~~~~ 471 (490)
T d1l5ja3 457 YVAQVDKTAVDTYRY 471 (490)
T ss_dssp HHHHHHTTHHHHTCC
T ss_pred HHhhcCCCchhhhhc
Confidence 566677777776543
No 4
>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.1e-49 Score=416.41 Aligned_cols=141 Identities=55% Similarity=0.943 Sum_probs=137.8
Q ss_pred CccccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCccccc
Q 002820 734 KLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGS 813 (876)
Q Consensus 734 ~~~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygs 813 (876)
++|+||++|||||+||||++++.++.+++||++||||+++||+||||||||||+|+++||||+||.++||.++|||+||+
T Consensus 2 ~~~~w~~~styi~~pPff~~~~~~~~~~~~i~~arvL~k~gd~iTTDHIsPAG~i~~~~~~~~~L~~~~v~~~d~n~yg~ 81 (259)
T d2b3ya1 2 KLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGS 81 (259)
T ss_dssp SSCCCCTTCSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGG
T ss_pred CCCCCCCCCccccCCCCcCCCCCCCCCCCCccCcEEEEEeCCCCChhccCCCCcccccCchHHHHHHcCCchhcchhhhh
Confidence 68999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 814 RRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 814 RrgN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
||||||||+||||+|||++|+|+ +.+|++|+|+|+||+|+|||+|++|+++|+|||||||.
T Consensus 82 rr~n~~~m~r~~f~ni~~~n~~~-~~~~~~t~~~p~~e~~~i~d~a~~y~~~g~~~iivag~ 142 (259)
T d2b3ya1 82 RRGNDAVMARGTFANIRLLNRFL-NKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGK 142 (259)
T ss_dssp GTTCHHHHHHTTTCCTTCEETTT-TEECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCS
T ss_pred hhcchhhhhhhhhccccccccee-eecCCceeecccccccchHHHHHHHHhcCCCeEEEecc
Confidence 99999999999999999999999 46999999999999999999999999999999999985
No 5
>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.87 E-value=1.1e-23 Score=216.00 Aligned_cols=108 Identities=24% Similarity=0.123 Sum_probs=95.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCCCCCcCCceEEeeecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCccccccc
Q 002820 736 YSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRR 815 (876)
Q Consensus 736 ~~Wd~~Styi~~ppfF~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfnsygsRr 815 (876)
..|+|+|||||.+++|+. ++..++.+||||++|||+||||||||||+ ||.+||+.+..+|.+..|+
T Consensus 1 ~~~~p~s~~~~~l~pf~~-----~~~~~~~~a~~L~~~gd~iTTDhIsPag~---------~~~~r~~~~~~~~~~~~~~ 66 (226)
T d1acoa1 1 VDVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAGP---------WLKFRGHLDNISNNLLIGA 66 (226)
T ss_dssp CCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHSCCGG---------GGGGTBCHHHHGGGTTTTS
T ss_pred CeeCCCcchhhcCCCCCC-----CCCcCccCCeEEEEeCCCcCccccCCCch---------hhhhcCchhhhhhceeccc
Confidence 369999999999888864 56679999999999999999999999996 8999998888888888888
Q ss_pred CCccccccccccchhhhhhhcCCCCCCceEEcCCCceeCHHHHHHHHHHcCCeEEEEecC
Q 002820 816 GNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMVKIQECWSWYNYLGW 875 (876)
Q Consensus 816 gN~evM~RGtfaNir~~N~l~~~~~G~~t~~~p~ge~~~v~daA~~Y~~~g~p~vv~~~~ 875 (876)
.|+.++ .++++.+.++++.+++||+|++|+++|+||||+||-
T Consensus 67 ~~~~~~------------------~~~~~~~~~~~~~~~~~d~a~~y~~~~~~~vivaG~ 108 (226)
T d1acoa1 67 INSENR------------------KANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDE 108 (226)
T ss_dssp BBTTTS------------------CBSCEECTTTCCEECHHHHHHHHHHTTCCEEEECCT
T ss_pred cccccc------------------ccceeeccCCCCcCChHHHHHHHHHhCCCeEeeccC
Confidence 877643 356789999999999999999999999999999983
No 6
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]}
Probab=94.61 E-value=0.0027 Score=60.43 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=17.0
Q ss_pred ceEEeeecCCccccccCCCCC
Q 002820 767 AYCLLNFGDSITTDHISPAGS 787 (876)
Q Consensus 767 a~vL~~lGD~iTTDHISPAG~ 787 (876)
.|| .++||+|+||||+||..
T Consensus 5 Gr~-~~~gDnI~TD~I~P~~~ 24 (162)
T d1v7la_ 5 GKV-WKFGDDISTDEITPGRY 24 (162)
T ss_dssp EEE-EECCSCCBHHHHSCTTS
T ss_pred EEE-EEcCCCCchhcCcCccc
Confidence 466 58999999999999863
No 7
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC component FruA, middle domain {Bacillus subtilis [TaxId: 1423]}
Probab=64.90 E-value=2.5 Score=36.93 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=26.6
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
++.||||.+|---..| ||+.|-+.|.++|.+++
T Consensus 2 ivaVTaCptGiAHTym-AAeaLe~aa~~~G~~ik 34 (103)
T d2r4qa1 2 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 34 (103)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCchhHHHH-HHHHHHHHHHHCCCeEE
Confidence 5689999999776655 78889999999999988
No 8
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component ManP, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=42.63 E-value=9.1 Score=33.19 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=27.2
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002820 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (876)
Q Consensus 533 iA~IgSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (876)
++.||+|..|=--.. .||+.|-+.|.+.|.+++
T Consensus 2 ivaVTaCptGiAHTy-mAAeaLe~aa~~~G~~ik 34 (103)
T d2r48a1 2 LLAITSCPNGIAHTY-MAAENLQKAADRLGVSIK 34 (103)
T ss_dssp EEEEEECSSCSHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCccHhHHH-HHHHHHHHHHHHcCCeEE
Confidence 568999999865554 478889899999999887
No 9
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=15.05 E-value=1.9e+02 Score=23.03 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=62.4
Q ss_pred cCcEEEEEEecccCCCCChhcHHHHHHHHHHhcCccceEEEEecCcccCCChhhhhh---hhccccccCcceeeeeCChH
Q 002820 341 LPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRAT---IANMSPEYGATMGFFPVDHV 417 (876)
Q Consensus 341 vPevVgV~LtG~L~~GVtAkDlvL~I~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaT---IaNMa~E~GAt~g~Fp~De~ 417 (876)
-.++.-|++.|.| ..-++..+--.|.+.+...+...-++.+ .++..+....-.. +.+.+.+.|.+..+.-+.+.
T Consensus 11 ~~~~~vv~l~G~l-~~~~~~~~~~~l~~~~~~~~~~~vvid~--~~v~~iDssg~~~l~~~~~~~~~~~~~l~l~~~~~~ 87 (110)
T d1vc1a_ 11 QDDKAIVRVQGDI-DAYNSSELKEQLRNFISTTSKKKIVLDL--SSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKES 87 (110)
T ss_dssp ETTEEEEEEESCB-STTTHHHHHHHHHHHHHHCCCSEEEEEE--EECCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred ECCEEEEEEEEEE-EhHHHHHHHHHHHHHHhcCCCCEEEEEE--ECCCccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4678889999999 5566667777777777777765556666 4566665555544 45666779999999999999
Q ss_pred HHHHHHhcCCC
Q 002820 418 TLQYLKLTGRS 428 (876)
Q Consensus 418 T~~YL~~tgR~ 428 (876)
..+=|+..|-.
T Consensus 88 v~~~l~~~gl~ 98 (110)
T d1vc1a_ 88 ISRILKLTHLD 98 (110)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHcCCC
Confidence 88888887743
No 10
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}
Probab=14.33 E-value=69 Score=26.90 Aligned_cols=95 Identities=13% Similarity=0.062 Sum_probs=50.4
Q ss_pred eccCcccccCCCCCCChhhhccccCCCeeEEEEeccCCCCCCC-----------CCCCCCceee--cCHHHHHHHHHhCc
Q 002820 601 VGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGR-----------VHPLTRANYL--ASPPLVVAYALAGT 667 (876)
Q Consensus 601 ~~~GCg~CiGnsg~l~~~~~~~i~~~~lv~~aVsSgNRNFeGR-----------~gp~~~~~YL--ASP~lVaA~AlaG~ 667 (876)
.+..|++|.-.-..+ .+..+..+..++.+.+|++..-+-+.. .++.- . ++ ..-.++.+|.+.|.
T Consensus 31 ~a~wC~~C~~~~~~l-~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~D~~~~~~~~~~v~~~ 107 (143)
T d2fy6a1 31 WASWCPLCLSELGQT-EKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKL-P-VVTDNGGTIAQSLNISVY 107 (143)
T ss_dssp ECTTCHHHHTTHHHH-HHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTS-C-EEECTTCHHHHHTTCCSS
T ss_pred ECCCCccccccCcch-hhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCccc-c-cccccchHHHHHcCCCcc
Confidence 478899998532222 122233344556556665543332221 22211 1 23 23456666655543
Q ss_pred cccCCCCCCcccCCCCCeeeccCCCCChHHHHHHHHh
Q 002820 668 VDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQS 704 (876)
Q Consensus 668 I~~d~~~eplg~~~~G~~v~l~diwPs~~Ei~~~~~~ 704 (876)
=++ +=.|++|+.++-.--..+.+++.++++.
T Consensus 108 P~~------~liD~~G~i~~~~~G~~~~~~~~~~l~~ 138 (143)
T d2fy6a1 108 PSW------ALIGKDGDVQRIVKGSINEAQALALIRD 138 (143)
T ss_dssp SEE------EEECTTSCEEEEEESCCCHHHHHHHHHC
T ss_pred CEE------EEECCCCEEEEEEECCCCHHHHHHHHHH
Confidence 111 2268999987765556678888887654
Done!