Query 002821
Match_columns 876
No_of_seqs 743 out of 4535
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 11:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 1.2E-61 2.5E-66 610.2 69.2 505 270-870 283-787 (919)
2 PRK10841 hybrid sensory kinase 100.0 7.7E-61 1.7E-65 593.7 62.2 489 263-870 430-919 (924)
3 KOG0519 Sensory transduction h 100.0 6.4E-63 1.4E-67 596.3 15.3 770 68-869 4-785 (786)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 1.1E-55 2.5E-60 558.8 55.7 369 270-869 454-822 (968)
5 PRK11091 aerobic respiration c 100.0 4.5E-56 9.8E-61 549.2 49.2 371 270-870 273-645 (779)
6 PRK15347 two component system 100.0 5.6E-55 1.2E-59 549.7 59.7 427 266-868 384-810 (921)
7 PRK11466 hybrid sensory histid 100.0 4.6E-54 1E-58 540.8 52.1 370 265-870 429-800 (914)
8 PRK09959 hybrid sensory histid 100.0 1.8E-49 3.9E-54 512.0 51.4 382 261-869 693-1075(1197)
9 PRK10618 phosphotransfer inter 100.0 5.6E-47 1.2E-51 463.4 46.5 240 264-554 434-673 (894)
10 PRK13837 two-component VirA-li 100.0 1.9E-44 4.1E-49 446.7 51.0 363 279-870 449-814 (828)
11 COG5002 VicK Signal transducti 100.0 4.3E-42 9.4E-47 355.4 17.8 227 276-556 221-451 (459)
12 PRK13557 histidine kinase; Pro 100.0 1.2E-37 2.6E-42 368.5 46.4 368 279-871 162-536 (540)
13 COG2205 KdpD Osmosensitive K+ 100.0 5.9E-38 1.3E-42 357.9 28.9 225 274-556 654-882 (890)
14 PRK09303 adaptive-response sen 100.0 4E-37 8.6E-42 348.5 33.6 242 258-554 129-378 (380)
15 PRK11006 phoR phosphate regulo 100.0 9.1E-34 2E-38 326.8 29.5 221 278-554 202-424 (430)
16 PRK10604 sensor protein RstB; 100.0 8E-33 1.7E-37 319.0 35.6 229 265-555 197-425 (433)
17 PRK10815 sensor protein PhoQ; 100.0 1E-31 2.2E-36 313.2 36.9 222 272-554 258-479 (485)
18 TIGR02938 nifL_nitrog nitrogen 100.0 1.1E-31 2.5E-36 313.2 31.4 214 280-553 276-494 (494)
19 PRK10549 signal transduction h 100.0 5E-31 1.1E-35 306.8 35.9 236 264-555 224-460 (466)
20 PRK10490 sensor protein KdpD; 100.0 7E-31 1.5E-35 325.1 32.8 223 275-555 659-884 (895)
21 PRK10364 sensor protein ZraS; 100.0 4.3E-30 9.3E-35 298.6 36.5 213 279-555 236-450 (457)
22 PRK10755 sensor protein BasS/P 100.0 4.8E-30 1E-34 288.3 34.6 227 265-554 122-351 (356)
23 PRK09835 sensor kinase CusS; P 100.0 1.2E-29 2.6E-34 296.5 37.1 232 265-553 247-480 (482)
24 TIGR03785 marine_sort_HK prote 100.0 1E-29 2.2E-34 307.9 36.7 231 266-552 471-703 (703)
25 TIGR01386 cztS_silS_copS heavy 100.0 1.3E-29 2.8E-34 293.7 35.1 231 264-552 225-457 (457)
26 COG4251 Bacteriophytochrome (l 100.0 1.5E-30 3.3E-35 288.2 25.6 236 264-558 508-746 (750)
27 PRK09470 cpxA two-component se 100.0 2.7E-29 5.8E-34 291.7 37.1 232 265-555 228-459 (461)
28 COG3852 NtrB Signal transducti 100.0 3.4E-30 7.3E-35 264.4 24.9 222 278-555 130-356 (363)
29 PRK09467 envZ osmolarity senso 100.0 6.4E-29 1.4E-33 286.6 34.0 222 264-554 213-434 (435)
30 PRK10337 sensor protein QseC; 100.0 9.6E-29 2.1E-33 286.5 34.7 226 265-551 222-449 (449)
31 TIGR02966 phoR_proteo phosphat 100.0 5.6E-29 1.2E-33 275.1 28.3 218 279-551 113-333 (333)
32 COG4191 Signal transduction hi 100.0 1.1E-27 2.3E-32 267.0 32.7 211 281-553 385-601 (603)
33 PRK11100 sensory histidine kin 100.0 1.6E-27 3.4E-32 277.6 35.5 218 279-553 255-473 (475)
34 PRK11073 glnL nitrogen regulat 100.0 6.8E-28 1.5E-32 269.8 27.7 217 279-553 129-347 (348)
35 COG0642 BaeS Signal transducti 100.0 3.5E-26 7.5E-31 250.7 31.2 217 279-555 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 2.6E-26 5.6E-31 274.8 29.4 214 279-555 389-603 (607)
37 PRK13560 hypothetical protein; 99.9 1.2E-25 2.6E-30 279.2 25.6 213 264-555 589-805 (807)
38 TIGR02916 PEP_his_kin putative 99.9 7.7E-25 1.7E-29 266.3 28.9 203 279-552 474-679 (679)
39 PF03924 CHASE: CHASE domain; 99.9 1.3E-25 2.9E-30 230.1 13.8 184 2-193 4-193 (193)
40 PRK11086 sensory histidine kin 99.9 3.7E-23 8E-28 245.3 23.9 195 280-555 339-537 (542)
41 PRK11644 sensory histidine kin 99.9 5.2E-22 1.1E-26 231.8 30.5 195 277-553 299-494 (495)
42 PRK15053 dpiB sensor histidine 99.9 4.2E-22 9.1E-27 236.8 27.0 198 282-555 340-541 (545)
43 COG5000 NtrY Signal transducti 99.9 2.3E-22 5E-27 223.3 21.2 220 265-553 476-708 (712)
44 COG4192 Signal transduction hi 99.9 8.4E-20 1.8E-24 195.6 26.0 212 281-553 452-666 (673)
45 COG0745 OmpR Response regulato 99.8 2.5E-20 5.3E-25 194.7 16.7 118 731-871 2-119 (229)
46 PRK13559 hypothetical protein; 99.8 1.3E-19 2.7E-24 204.1 20.8 187 278-554 168-360 (361)
47 PF02518 HATPase_c: Histidine 99.8 4.3E-20 9.4E-25 171.5 12.7 109 391-553 1-110 (111)
48 PRK10935 nitrate/nitrite senso 99.8 1.4E-17 3E-22 198.9 26.9 194 282-555 362-561 (565)
49 COG3290 CitA Signal transducti 99.8 6.6E-17 1.4E-21 180.4 23.7 194 282-555 335-533 (537)
50 PRK09581 pleD response regulat 99.7 1.5E-16 3.2E-21 184.4 24.2 257 583-867 4-271 (457)
51 PRK10600 nitrate/nitrite senso 99.7 7.1E-16 1.5E-20 184.4 29.9 180 293-554 375-557 (569)
52 COG2204 AtoC Response regulato 99.7 2.1E-17 4.6E-22 185.1 15.0 117 730-869 5-121 (464)
53 PF00072 Response_reg: Respons 99.7 5.1E-17 1.1E-21 150.4 13.6 111 732-865 1-112 (112)
54 COG3437 Response regulator con 99.7 2.2E-17 4.8E-22 175.5 12.4 120 729-868 14-133 (360)
55 COG0784 CheY FOG: CheY-like re 99.7 1.8E-16 3.9E-21 150.7 15.8 119 729-870 5-126 (130)
56 COG4753 Response regulator con 99.7 5.5E-17 1.2E-21 181.3 13.1 116 730-868 2-120 (475)
57 COG3706 PleD Response regulato 99.7 1.7E-15 3.6E-20 168.7 19.0 123 728-871 131-253 (435)
58 PRK10547 chemotaxis protein Ch 99.7 6.9E-15 1.5E-19 174.2 24.7 146 353-555 343-525 (670)
59 COG4566 TtrR Response regulato 99.7 8.4E-16 1.8E-20 149.1 13.3 117 730-869 5-121 (202)
60 COG4565 CitB Response regulato 99.7 1E-15 2.3E-20 151.4 13.3 115 731-868 2-118 (224)
61 COG2197 CitB Response regulato 99.7 1.6E-15 3.5E-20 157.0 15.4 118 731-871 2-121 (211)
62 PLN03029 type-a response regul 99.6 8.4E-15 1.8E-19 153.3 15.3 119 729-867 8-145 (222)
63 COG3614 Predicted periplasmic 99.6 6.2E-15 1.4E-19 153.4 12.6 158 2-162 80-247 (348)
64 PRK10046 dpiA two-component re 99.6 4.8E-14 1E-18 148.1 16.5 115 730-867 5-121 (225)
65 PRK10529 DNA-binding transcrip 99.6 7.7E-14 1.7E-18 145.7 16.9 117 730-870 2-118 (225)
66 PRK04184 DNA topoisomerase VI 99.6 6.3E-14 1.4E-18 160.5 17.5 117 389-555 30-154 (535)
67 PRK11173 two-component respons 99.5 1.2E-13 2.6E-18 145.9 16.9 117 730-870 4-120 (237)
68 PRK10816 DNA-binding transcrip 99.5 1.8E-13 3.8E-18 142.9 16.7 117 731-870 2-118 (223)
69 PRK09836 DNA-binding transcrip 99.5 2.2E-13 4.8E-18 142.6 16.9 116 731-869 2-117 (227)
70 COG3947 Response regulator con 99.5 3.2E-14 7E-19 146.0 10.0 115 731-870 2-116 (361)
71 PRK09468 ompR osmolarity respo 99.5 2.9E-13 6.3E-18 142.9 17.3 119 729-870 5-123 (239)
72 PRK10643 DNA-binding transcrip 99.5 2.6E-13 5.6E-18 141.0 16.6 116 731-869 2-117 (222)
73 PRK10766 DNA-binding transcrip 99.5 2.4E-13 5.2E-18 141.6 16.0 116 730-869 3-118 (221)
74 PRK10430 DNA-binding transcrip 99.5 2.1E-13 4.6E-18 144.6 15.8 115 731-867 3-120 (239)
75 PRK10701 DNA-binding transcrip 99.5 3.6E-13 7.8E-18 142.4 16.2 116 731-870 3-118 (240)
76 PRK10955 DNA-binding transcrip 99.5 4.4E-13 9.5E-18 140.5 16.6 114 731-869 3-116 (232)
77 PRK13856 two-component respons 99.5 4.1E-13 8.9E-18 142.3 16.3 115 731-869 3-118 (241)
78 PRK10161 transcriptional regul 99.5 4.4E-13 9.6E-18 140.5 16.4 120 730-870 3-122 (229)
79 TIGR02154 PhoB phosphate regul 99.5 4.9E-13 1.1E-17 139.1 16.2 120 730-870 3-122 (226)
80 PRK11517 transcriptional regul 99.5 7.6E-13 1.7E-17 137.8 16.9 116 731-870 2-117 (223)
81 TIGR02875 spore_0_A sporulatio 99.5 5.9E-13 1.3E-17 143.1 16.2 119 730-869 3-123 (262)
82 PRK10336 DNA-binding transcrip 99.5 6.9E-13 1.5E-17 137.6 16.2 116 731-869 2-117 (219)
83 TIGR03787 marine_sort_RR prote 99.5 6.5E-13 1.4E-17 138.9 15.9 117 730-869 1-119 (227)
84 smart00387 HATPase_c Histidine 99.5 8.3E-13 1.8E-17 120.5 14.6 109 391-553 1-110 (111)
85 COG4567 Response regulator con 99.5 8.2E-13 1.8E-17 123.0 13.4 115 730-867 10-124 (182)
86 TIGR01387 cztR_silR_copR heavy 99.5 1.4E-12 3.1E-17 135.0 16.4 116 732-870 1-116 (218)
87 PRK11083 DNA-binding response 99.4 2.1E-12 4.5E-17 134.7 16.9 118 730-870 4-121 (228)
88 PRK10840 transcriptional regul 99.4 1.4E-12 3E-17 136.1 15.4 117 730-869 4-125 (216)
89 PRK10923 glnG nitrogen regulat 99.4 2.2E-12 4.8E-17 150.7 16.4 117 730-869 4-120 (469)
90 PRK14084 two-component respons 99.4 2.7E-12 5.9E-17 136.5 15.7 113 731-868 2-116 (246)
91 CHL00148 orf27 Ycf27; Reviewed 99.4 3.5E-12 7.6E-17 134.4 16.3 116 730-869 7-122 (240)
92 PRK09958 DNA-binding transcrip 99.4 3.6E-12 7.9E-17 130.8 15.9 117 731-870 2-119 (204)
93 PRK11361 acetoacetate metaboli 99.4 3E-12 6.5E-17 149.1 16.8 118 729-869 4-121 (457)
94 PRK15115 response regulator Gl 99.4 2.2E-12 4.7E-17 149.7 15.0 117 730-869 6-122 (444)
95 PRK09483 response regulator; P 99.4 5E-12 1.1E-16 131.1 15.4 117 731-870 3-121 (217)
96 KOG0519 Sensory transduction h 99.4 2.8E-12 6E-17 156.6 15.0 402 268-705 374-784 (786)
97 TIGR02915 PEP_resp_reg putativ 99.4 3.2E-12 6.8E-17 148.4 14.8 113 732-869 1-118 (445)
98 PRK10365 transcriptional regul 99.4 2.8E-12 6E-17 148.7 14.2 116 730-868 6-121 (441)
99 PRK12555 chemotaxis-specific m 99.4 4.7E-12 1E-16 141.4 15.1 114 731-868 2-128 (337)
100 PF00512 HisKA: His Kinase A ( 99.4 2.6E-12 5.5E-17 108.1 9.8 66 279-344 1-68 (68)
101 PRK11697 putative two-componen 99.4 5E-12 1.1E-16 133.6 14.4 114 730-869 2-117 (238)
102 PRK09935 transcriptional regul 99.4 9.3E-12 2E-16 128.0 16.1 118 730-870 4-123 (210)
103 PRK10360 DNA-binding transcrip 99.4 7E-12 1.5E-16 127.8 14.9 114 731-870 3-118 (196)
104 TIGR01818 ntrC nitrogen regula 99.4 4.7E-12 1E-16 147.7 14.7 114 732-868 1-114 (463)
105 PRK10710 DNA-binding transcrip 99.4 1.5E-11 3.3E-16 129.5 16.9 116 730-869 11-126 (240)
106 PRK15479 transcriptional regul 99.3 2.1E-11 4.6E-16 126.4 16.2 116 731-869 2-117 (221)
107 PRK14868 DNA topoisomerase VI 99.3 9.9E-12 2.1E-16 144.9 14.9 126 371-551 21-159 (795)
108 TIGR01052 top6b DNA topoisomer 99.3 6.9E-12 1.5E-16 142.4 13.2 112 389-553 22-140 (488)
109 PRK10100 DNA-binding transcrip 99.3 2E-11 4.4E-16 126.8 14.2 114 729-869 10-126 (216)
110 PRK00742 chemotaxis-specific m 99.3 2.8E-11 6E-16 136.1 16.2 114 730-867 4-130 (354)
111 PRK11475 DNA-binding transcrip 99.3 2.3E-11 4.9E-16 125.6 13.4 106 742-870 3-115 (207)
112 PRK09390 fixJ response regulat 99.3 4.1E-11 8.8E-16 121.8 14.3 117 730-869 4-120 (202)
113 cd00075 HATPase_c Histidine ki 99.3 3.9E-11 8.4E-16 107.6 12.5 101 396-551 1-103 (103)
114 PRK14867 DNA topoisomerase VI 99.3 2.6E-11 5.5E-16 141.7 14.0 114 390-555 28-151 (659)
115 COG2201 CheB Chemotaxis respon 99.3 2.3E-11 5.1E-16 131.7 12.1 102 731-856 3-108 (350)
116 PRK09581 pleD response regulat 99.3 7.8E-11 1.7E-15 136.6 16.5 117 731-868 4-120 (457)
117 PRK13435 response regulator; P 99.3 1.2E-10 2.5E-15 113.3 14.9 114 729-869 5-120 (145)
118 COG3707 AmiR Response regulato 99.3 3.4E-11 7.4E-16 118.3 11.0 112 730-865 6-118 (194)
119 TIGR01925 spIIAB anti-sigma F 99.2 6E-11 1.3E-15 114.5 12.6 98 391-551 35-136 (137)
120 PRK13558 bacterio-opsin activa 99.2 8.5E-11 1.9E-15 143.5 14.1 116 730-868 8-125 (665)
121 PRK10651 transcriptional regul 99.2 2.8E-10 6.1E-15 117.3 15.8 118 730-870 7-126 (216)
122 PRK15369 two component system 99.2 3.2E-10 7E-15 115.8 15.6 118 730-870 4-123 (211)
123 PRK10403 transcriptional regul 99.2 3.5E-10 7.6E-15 116.4 15.7 117 730-869 7-125 (215)
124 PRK10610 chemotaxis regulatory 99.2 6.8E-10 1.5E-14 102.9 16.2 119 730-869 6-125 (129)
125 COG0643 CheA Chemotaxis protei 99.2 4.1E-09 8.8E-14 126.0 25.0 140 357-555 394-575 (716)
126 PRK15411 rcsA colanic acid cap 99.2 4.3E-10 9.3E-15 116.4 14.4 116 731-870 2-123 (207)
127 PRK03660 anti-sigma F factor; 99.2 4E-10 8.6E-15 110.0 13.3 101 392-555 36-140 (146)
128 PRK09191 two-component respons 99.1 7.9E-10 1.7E-14 118.5 15.1 116 729-870 137-254 (261)
129 PRK10693 response regulator of 99.0 9E-10 1.9E-14 121.0 11.8 89 758-869 2-91 (303)
130 COG3851 UhpB Signal transducti 99.0 1.3E-07 2.8E-12 100.3 26.9 193 278-552 301-493 (497)
131 cd00156 REC Signal receiver do 99.0 4.6E-09 9.9E-14 93.2 13.0 112 733-867 1-112 (113)
132 COG4585 Signal transduction hi 99.0 2E-07 4.4E-12 105.3 29.1 112 370-553 254-365 (365)
133 COG3920 Signal transduction hi 99.0 4E-07 8.6E-12 94.9 26.3 194 279-555 18-217 (221)
134 PRK04069 serine-protein kinase 98.8 4.7E-08 1E-12 97.1 14.1 103 392-555 39-145 (161)
135 COG3850 NarQ Signal transducti 98.8 2.3E-06 4.9E-11 96.1 27.7 184 285-552 374-567 (574)
136 PRK15029 arginine decarboxylas 98.8 3E-08 6.4E-13 119.2 12.3 106 731-859 2-121 (755)
137 COG2972 Predicted signal trans 98.8 3.9E-06 8.5E-11 97.6 29.3 65 479-554 386-453 (456)
138 COG3279 LytT Response regulato 98.7 4.4E-08 9.6E-13 103.8 10.3 112 731-867 3-116 (244)
139 smart00388 HisKA His Kinase A 98.6 2.2E-07 4.7E-12 76.3 8.6 65 280-344 2-66 (66)
140 COG3275 LytS Putative regulato 98.6 1.1E-05 2.5E-10 89.2 23.9 129 351-555 415-553 (557)
141 TIGR01924 rsbW_low_gc serine-p 98.6 6.1E-07 1.3E-11 88.9 12.8 101 393-554 40-144 (159)
142 COG4564 Signal transduction hi 98.5 4.7E-05 1E-09 80.4 24.8 183 291-554 262-448 (459)
143 KOG0787 Dehydrogenase kinase [ 98.4 1.3E-05 2.7E-10 86.4 18.7 148 352-553 215-380 (414)
144 PF14501 HATPase_c_5: GHKL dom 98.4 7.3E-06 1.6E-10 74.5 12.8 94 392-553 2-99 (100)
145 PRK11107 hybrid sensory histid 98.3 5E-06 1.1E-10 105.6 14.9 118 726-868 533-650 (919)
146 cd00082 HisKA Histidine Kinase 98.1 8.9E-06 1.9E-10 66.0 7.9 62 279-340 3-65 (65)
147 COG3706 PleD Response regulato 98.1 3.2E-06 6.9E-11 95.1 5.6 91 754-869 13-103 (435)
148 COG3452 Predicted periplasmic 98.1 2.4E-05 5.2E-10 80.4 11.1 82 74-164 119-200 (297)
149 TIGR00585 mutl DNA mismatch re 98.0 3.1E-05 6.7E-10 85.5 12.2 97 394-550 21-125 (312)
150 COG1389 DNA topoisomerase VI, 97.8 6.9E-05 1.5E-09 82.6 9.2 111 392-554 33-151 (538)
151 PF13581 HATPase_c_2: Histidin 97.8 0.00024 5.1E-09 67.2 11.1 93 392-550 28-124 (125)
152 smart00448 REC cheY-homologous 97.0 0.0043 9.3E-08 46.3 7.7 54 731-785 2-55 (55)
153 COG2172 RsbW Anti-sigma regula 96.8 0.0099 2.1E-07 57.8 10.8 90 392-544 37-131 (146)
154 PRK00095 mutL DNA mismatch rep 96.8 0.0063 1.4E-07 73.4 11.2 88 395-542 22-115 (617)
155 PF06490 FleQ: Flagellar regul 96.6 0.015 3.2E-07 53.7 9.9 106 731-867 1-107 (109)
156 PF00072 Response_reg: Respons 96.5 0.019 4E-07 52.4 9.8 110 584-701 1-111 (112)
157 COG0745 OmpR Response regulato 96.3 0.041 8.8E-07 57.9 11.8 118 582-707 1-118 (229)
158 PF13589 HATPase_c_3: Histidin 96.1 0.0052 1.1E-07 59.2 3.6 67 481-552 35-106 (137)
159 PRK05559 DNA topoisomerase IV 95.8 0.018 4E-07 69.3 7.4 96 386-541 26-138 (631)
160 COG2204 AtoC Response regulato 95.0 0.17 3.6E-06 58.1 11.2 178 582-767 5-209 (464)
161 PRK05644 gyrB DNA gyrase subun 94.7 0.062 1.3E-06 64.9 7.2 88 386-529 26-130 (638)
162 PRK15347 two component system 94.6 0.31 6.8E-06 62.1 14.0 121 580-706 689-811 (921)
163 cd02071 MM_CoA_mut_B12_BD meth 94.6 0.87 1.9E-05 42.8 13.3 107 736-865 10-121 (122)
164 PRK11091 aerobic respiration c 94.5 0.4 8.6E-06 60.0 14.3 193 580-796 524-717 (779)
165 PRK14083 HSP90 family protein; 94.5 0.025 5.4E-07 67.5 3.2 57 481-541 64-127 (601)
166 TIGR01055 parE_Gneg DNA topois 94.4 0.049 1.1E-06 65.5 5.5 50 481-530 63-124 (625)
167 PLN03029 type-a response regul 94.3 0.33 7.2E-06 50.8 10.7 120 580-703 7-144 (222)
168 TIGR01059 gyrB DNA gyrase, B s 94.2 0.091 2E-06 63.8 7.2 35 386-420 19-58 (654)
169 TIGR02956 TMAO_torS TMAO reduc 93.8 0.35 7.6E-06 62.0 11.9 121 580-706 701-822 (968)
170 PRK02261 methylaspartate mutas 93.7 1.4 3E-05 42.4 13.0 118 729-869 3-135 (137)
171 COG0784 CheY FOG: CheY-like re 93.1 1.2 2.6E-05 41.4 11.5 119 580-705 4-124 (130)
172 PRK10841 hybrid sensory kinase 92.8 0.62 1.4E-05 59.3 11.5 119 579-705 799-917 (924)
173 PRK05218 heat shock protein 90 92.6 0.4 8.6E-06 57.9 9.1 58 481-542 74-143 (613)
174 PTZ00272 heat shock protein 83 92.6 0.095 2.1E-06 63.4 3.7 20 481-500 73-92 (701)
175 PRK11466 hybrid sensory histid 92.1 0.73 1.6E-05 58.8 11.2 120 580-706 680-799 (914)
176 PF03709 OKR_DC_1_N: Orn/Lys/A 91.8 0.82 1.8E-05 42.5 8.3 95 743-860 7-103 (115)
177 PRK00742 chemotaxis-specific m 91.7 14 0.0003 41.5 19.8 105 581-693 3-110 (354)
178 COG5381 Uncharacterized protei 91.5 0.5 1.1E-05 44.7 6.2 28 397-424 65-92 (184)
179 cd02067 B12-binding B12 bindin 91.5 1.9 4E-05 40.2 10.4 95 736-854 10-110 (119)
180 PRK13837 two-component VirA-li 91.4 2.9 6.3E-05 52.8 15.3 119 580-707 696-814 (828)
181 PRK12555 chemotaxis-specific m 91.1 7.3 0.00016 43.5 16.5 116 582-705 1-128 (337)
182 TIGR02154 PhoB phosphate regul 90.8 2.6 5.7E-05 43.0 11.9 119 582-706 3-121 (226)
183 PRK10161 transcriptional regul 90.6 2.5 5.4E-05 43.7 11.6 119 582-706 3-121 (229)
184 PTZ00130 heat shock protein 90 90.6 0.34 7.4E-06 59.1 5.5 48 481-528 136-194 (814)
185 COG4999 Uncharacterized domain 90.6 1.7 3.6E-05 40.0 8.4 117 726-869 8-127 (140)
186 TIGR01818 ntrC nitrogen regula 89.6 1.8 4E-05 50.5 10.5 155 584-753 1-155 (463)
187 PRK10955 DNA-binding transcrip 89.5 3.3 7.2E-05 42.6 11.4 114 583-706 3-116 (232)
188 smart00433 TOP2c Topoisomerase 89.4 0.4 8.8E-06 57.6 4.8 48 481-528 34-93 (594)
189 PRK09468 ompR osmolarity respo 89.0 4.2 9.2E-05 42.3 11.9 119 581-707 5-123 (239)
190 COG3437 Response regulator con 88.7 1.9 4.2E-05 47.4 8.9 115 580-701 13-129 (360)
191 PRK09836 DNA-binding transcrip 88.2 4.9 0.00011 41.4 11.6 117 582-706 1-117 (227)
192 PRK15399 lysine decarboxylase 88.2 2.3 5.1E-05 51.7 10.1 97 731-852 2-104 (713)
193 PRK11173 two-component respons 88.0 4.7 0.0001 42.0 11.4 116 582-706 4-119 (237)
194 PRK10643 DNA-binding transcrip 87.6 5.4 0.00012 40.6 11.4 117 582-706 1-117 (222)
195 TIGR03815 CpaE_hom_Actino heli 87.5 2.6 5.6E-05 46.8 9.4 85 753-868 1-86 (322)
196 PRK10336 DNA-binding transcrip 87.2 7.2 0.00016 39.6 12.0 117 582-706 1-117 (219)
197 PRK10816 DNA-binding transcrip 86.8 6.3 0.00014 40.4 11.4 118 582-707 1-118 (223)
198 COG4566 TtrR Response regulato 86.6 3.7 8E-05 41.3 8.7 118 582-707 5-122 (202)
199 PRK10529 DNA-binding transcrip 86.2 17 0.00037 37.1 14.3 116 582-706 2-117 (225)
200 CHL00148 orf27 Ycf27; Reviewed 86.1 8.1 0.00018 39.9 11.9 117 581-706 6-122 (240)
201 PRK14939 gyrB DNA gyrase subun 85.9 0.52 1.1E-05 57.6 2.9 35 386-420 25-65 (756)
202 PRK11083 DNA-binding response 85.9 9.7 0.00021 38.9 12.2 117 582-706 4-120 (228)
203 PRK10766 DNA-binding transcrip 85.9 8.2 0.00018 39.4 11.7 116 582-706 3-118 (221)
204 PRK10701 DNA-binding transcrip 85.8 7.2 0.00016 40.6 11.3 116 583-707 3-118 (240)
205 COG0323 MutL DNA mismatch repa 85.6 1.1 2.4E-05 54.3 5.5 27 481-507 54-80 (638)
206 PRK15400 lysine decarboxylase 85.5 3.7 7.9E-05 50.1 9.7 81 731-836 2-88 (714)
207 TIGR00640 acid_CoA_mut_C methy 85.4 16 0.00035 34.9 12.3 111 736-867 13-126 (132)
208 PRK11517 transcriptional regul 85.4 8.5 0.00019 39.3 11.5 116 582-706 1-116 (223)
209 PRK13435 response regulator; P 84.7 15 0.00032 34.9 12.0 115 581-706 5-120 (145)
210 TIGR02875 spore_0_A sporulatio 84.3 9.9 0.00021 40.4 11.7 120 582-707 3-124 (262)
211 COG4565 CitB Response regulato 83.9 4.9 0.00011 41.2 8.2 114 583-704 2-117 (224)
212 PRK13856 two-component respons 83.9 8.6 0.00019 40.2 10.8 116 583-706 3-118 (241)
213 PRK10430 DNA-binding transcrip 83.7 8.4 0.00018 40.4 10.7 117 582-704 2-120 (239)
214 TIGR03787 marine_sort_RR prote 82.9 13 0.00029 38.0 11.7 118 583-706 2-119 (227)
215 PRK10840 transcriptional regul 82.9 14 0.0003 38.0 11.8 121 581-706 3-125 (216)
216 PRK10046 dpiA two-component re 82.7 13 0.00029 38.5 11.7 117 581-705 4-122 (225)
217 cd04728 ThiG Thiazole synthase 82.7 13 0.00027 39.2 10.9 87 747-864 117-220 (248)
218 PRK15115 response regulator Gl 82.7 6.3 0.00014 45.7 10.0 118 581-706 5-122 (444)
219 PRK10365 transcriptional regul 82.5 6.4 0.00014 45.6 10.0 118 581-706 5-122 (441)
220 PRK00208 thiG thiazole synthas 82.2 13 0.00029 39.1 10.9 87 747-864 117-220 (250)
221 PRK09959 hybrid sensory histid 82.2 6 0.00013 52.1 10.7 118 581-706 958-1075(1197)
222 TIGR01501 MthylAspMutase methy 81.7 29 0.00062 33.3 12.2 108 738-868 14-132 (134)
223 PRK09958 DNA-binding transcrip 81.6 9.1 0.0002 38.5 9.7 117 582-706 1-118 (204)
224 PRK10923 glnG nitrogen regulat 80.9 8.8 0.00019 44.9 10.5 117 582-706 4-120 (469)
225 PHA02569 39 DNA topoisomerase 80.7 1.1 2.4E-05 53.7 2.8 51 481-531 80-144 (602)
226 PRK10610 chemotaxis regulatory 80.4 26 0.00057 31.0 11.5 119 581-705 5-124 (129)
227 cd02070 corrinoid_protein_B12- 80.1 17 0.00037 37.3 11.1 101 729-853 82-191 (201)
228 COG4753 Response regulator con 79.7 5.5 0.00012 46.0 7.8 116 583-706 3-121 (475)
229 TIGR01058 parE_Gpos DNA topois 78.9 1.3 2.9E-05 53.5 2.7 51 481-531 67-129 (637)
230 cd02069 methionine_synthase_B1 78.9 14 0.0003 38.4 9.9 103 730-855 89-203 (213)
231 cd02072 Glm_B12_BD B12 binding 78.7 45 0.00097 31.7 12.3 105 738-865 12-127 (128)
232 PF02310 B12-binding: B12 bind 78.2 11 0.00024 34.8 8.3 93 738-854 13-112 (121)
233 PRK14084 two-component respons 77.1 17 0.00038 38.0 10.4 115 582-706 1-117 (246)
234 PRK10710 DNA-binding transcrip 77.1 34 0.00074 35.2 12.6 116 582-706 11-126 (240)
235 COG0326 HtpG Molecular chapero 76.7 3.2 6.9E-05 49.2 4.9 49 481-529 75-134 (623)
236 PRK11361 acetoacetate metaboli 76.6 17 0.00037 42.3 11.1 118 581-706 4-121 (457)
237 PRK09191 two-component respons 76.4 30 0.00065 36.5 12.1 115 582-706 138-253 (261)
238 PRK09483 response regulator; P 75.8 20 0.00044 36.3 10.3 117 582-706 2-120 (217)
239 PRK10618 phosphotransfer inter 75.5 11 0.00023 47.9 9.5 38 576-613 684-721 (894)
240 COG3947 Response regulator con 75.3 18 0.00039 38.9 9.4 114 583-706 2-115 (361)
241 TIGR01387 cztR_silR_copR heavy 75.1 19 0.00041 36.4 9.8 115 584-706 1-115 (218)
242 PRK15479 transcriptional regul 74.4 23 0.00049 35.9 10.2 116 583-706 2-117 (221)
243 PRK11697 putative two-componen 72.5 30 0.00064 35.9 10.7 114 582-706 2-117 (238)
244 PRK13557 histidine kinase; Pro 71.2 41 0.00089 39.5 12.8 121 579-706 413-534 (540)
245 PF02254 TrkA_N: TrkA-N domain 70.9 46 0.001 30.3 10.4 93 730-852 22-115 (116)
246 COG2197 CitB Response regulato 70.1 40 0.00087 34.9 10.8 116 583-706 2-119 (211)
247 TIGR03321 alt_F1F0_F0_B altern 68.7 1.7E+02 0.0036 31.2 17.5 19 392-410 191-209 (246)
248 TIGR02915 PEP_resp_reg putativ 66.7 29 0.00063 40.2 10.0 116 584-706 1-118 (445)
249 COG4567 Response regulator con 66.0 38 0.00083 33.0 8.5 114 583-704 11-124 (182)
250 PF03602 Cons_hypoth95: Conser 65.9 10 0.00023 38.3 5.2 66 730-797 66-138 (183)
251 PLN03237 DNA topoisomerase 2; 65.8 10 0.00022 49.6 6.1 54 481-534 112-177 (1465)
252 PTZ00109 DNA gyrase subunit b; 64.6 0.66 1.4E-05 57.0 -4.3 18 514-531 246-264 (903)
253 PRK10360 DNA-binding transcrip 63.9 43 0.00092 33.2 9.4 114 582-706 2-117 (196)
254 COG4122 Predicted O-methyltran 63.2 25 0.00053 36.7 7.4 55 730-785 85-143 (219)
255 PRK01130 N-acetylmannosamine-6 62.3 75 0.0016 33.0 11.1 84 744-852 109-201 (221)
256 PRK09390 fixJ response regulat 62.2 41 0.00089 33.1 8.9 117 582-706 4-120 (202)
257 PRK09935 transcriptional regul 61.9 57 0.0012 32.5 10.0 118 581-706 3-122 (210)
258 cd00156 REC Signal receiver do 61.4 37 0.00081 28.4 7.5 110 586-703 2-111 (113)
259 PRK00043 thiE thiamine-phospha 61.3 1.1E+02 0.0023 31.4 12.0 91 751-866 102-206 (212)
260 cd05212 NAD_bind_m-THF_DH_Cycl 60.2 31 0.00067 33.3 7.1 54 727-786 26-83 (140)
261 COG2185 Sbm Methylmalonyl-CoA 59.8 1.7E+02 0.0037 28.3 12.4 117 730-867 13-136 (143)
262 PF01596 Methyltransf_3: O-met 59.6 27 0.00059 36.0 7.0 55 729-783 70-130 (205)
263 TIGR01334 modD putative molybd 59.5 39 0.00085 36.6 8.4 71 755-851 191-261 (277)
264 PRK13111 trpA tryptophan synth 59.4 24 0.00053 37.8 6.9 57 788-866 75-137 (258)
265 TIGR02370 pyl_corrinoid methyl 59.0 71 0.0015 32.7 10.0 99 730-852 85-192 (197)
266 PRK10558 alpha-dehydro-beta-de 58.2 97 0.0021 33.2 11.2 99 745-865 10-111 (256)
267 TIGR00007 phosphoribosylformim 57.3 87 0.0019 32.6 10.6 66 763-852 148-217 (230)
268 PRK09426 methylmalonyl-CoA mut 56.2 82 0.0018 38.9 11.4 111 736-869 593-708 (714)
269 cd04729 NanE N-acetylmannosami 55.6 1.5E+02 0.0032 30.7 11.9 81 747-852 116-205 (219)
270 COG0512 PabA Anthranilate/para 53.3 23 0.0005 35.9 5.0 52 730-782 2-53 (191)
271 PF06490 FleQ: Flagellar regul 53.3 93 0.002 28.5 8.8 33 583-615 1-33 (109)
272 PRK10128 2-keto-3-deoxy-L-rham 53.0 1.4E+02 0.003 32.3 11.3 99 745-865 9-110 (267)
273 PRK13587 1-(5-phosphoribosyl)- 52.8 85 0.0018 33.1 9.6 67 763-852 151-220 (234)
274 cd04723 HisA_HisF Phosphoribos 52.6 84 0.0018 33.1 9.5 67 762-852 148-217 (233)
275 cd04726 KGPDC_HPS 3-Keto-L-gul 52.6 1.9E+02 0.0041 29.3 12.0 96 731-852 79-185 (202)
276 PLN02591 tryptophan synthase 52.3 37 0.00081 36.2 6.8 44 823-866 77-126 (250)
277 PF10087 DUF2325: Uncharacteri 52.0 1.7E+02 0.0038 25.9 10.2 64 731-799 1-70 (97)
278 COG5385 Uncharacterized protei 51.7 2.5E+02 0.0055 27.8 17.7 121 283-420 18-139 (214)
279 PRK05458 guanosine 5'-monophos 51.2 2.2E+02 0.0047 31.7 12.7 97 731-852 113-229 (326)
280 TIGR03239 GarL 2-dehydro-3-deo 50.8 1.7E+02 0.0038 31.1 11.6 84 760-865 20-104 (249)
281 COG0742 N6-adenine-specific me 50.4 54 0.0012 33.3 7.2 53 730-782 67-122 (187)
282 PRK13125 trpA tryptophan synth 50.0 1.7E+02 0.0036 31.0 11.4 89 741-854 117-215 (244)
283 COG0187 GyrB Type IIA topoisom 49.7 2.3 4.9E-05 50.2 -3.1 51 481-531 69-131 (635)
284 cd00331 IGPS Indole-3-glycerol 49.6 2.2E+02 0.0047 29.4 12.0 80 749-852 117-200 (217)
285 KOG1977 DNA mismatch repair pr 49.4 34 0.00073 40.9 6.2 44 479-522 49-98 (1142)
286 TIGR00262 trpA tryptophan synt 49.1 48 0.001 35.5 7.1 57 788-866 73-135 (256)
287 PRK15369 two component system 48.7 1.4E+02 0.003 29.4 10.2 118 581-706 3-122 (211)
288 COG3105 Uncharacterized protei 48.5 1.8E+02 0.0039 27.5 9.4 25 230-254 6-30 (138)
289 PTZ00108 DNA topoisomerase 2-l 48.3 17 0.00036 47.7 3.9 51 481-531 95-157 (1388)
290 PF07568 HisKA_2: Histidine ki 48.2 1E+02 0.0022 26.2 7.6 72 287-367 2-73 (76)
291 PRK10651 transcriptional regul 48.1 1.4E+02 0.0031 29.6 10.3 118 581-706 6-125 (216)
292 KOG1979 DNA mismatch repair pr 48.0 25 0.00054 41.2 4.8 26 481-506 58-83 (694)
293 PRK03659 glutathione-regulated 48.0 1.1E+02 0.0024 37.2 10.8 95 729-853 423-518 (601)
294 PRK10669 putative cation:proto 47.7 2E+02 0.0043 34.5 12.9 109 729-870 440-549 (558)
295 PLN03128 DNA topoisomerase 2; 47.6 27 0.00058 45.2 5.6 51 481-531 87-149 (1135)
296 PRK00278 trpC indole-3-glycero 47.1 2.6E+02 0.0056 30.0 12.3 105 733-861 139-253 (260)
297 PRK14474 F0F1 ATP synthase sub 46.6 3.9E+02 0.0085 28.5 17.5 20 392-411 190-212 (250)
298 PF05582 Peptidase_U57: YabG p 46.5 1.4E+02 0.003 32.2 9.7 101 730-854 106-227 (287)
299 PRK08385 nicotinate-nucleotide 46.1 1.7E+02 0.0037 31.7 10.7 96 731-851 156-257 (278)
300 TIGR02855 spore_yabG sporulati 46.0 1.1E+02 0.0023 32.9 8.7 101 730-854 105-226 (283)
301 cd04724 Tryptophan_synthase_al 45.3 57 0.0012 34.6 6.9 42 824-865 76-123 (242)
302 cd00452 KDPG_aldolase KDPG and 45.1 1.3E+02 0.0028 30.4 9.3 77 749-852 93-170 (190)
303 PRK10742 putative methyltransf 44.9 2.6E+02 0.0057 29.8 11.5 58 729-788 110-178 (250)
304 PRK15411 rcsA colanic acid cap 44.9 2.3E+02 0.005 29.0 11.2 116 583-706 2-122 (207)
305 PRK13558 bacterio-opsin activa 44.4 70 0.0015 39.2 8.5 116 582-705 8-125 (665)
306 PRK15029 arginine decarboxylas 44.4 1.3E+02 0.0027 37.6 10.5 72 582-654 1-81 (755)
307 CHL00162 thiG thiamin biosynth 44.4 4.2E+02 0.0092 28.3 12.7 97 744-866 128-236 (267)
308 PRK07896 nicotinate-nucleotide 44.0 88 0.0019 34.1 8.1 71 755-851 202-272 (289)
309 PRK14471 F0F1 ATP synthase sub 43.6 3.3E+02 0.0071 26.8 14.5 64 230-293 10-78 (164)
310 PRK13428 F0F1 ATP synthase sub 43.6 4.2E+02 0.009 30.9 14.1 66 231-296 4-74 (445)
311 PF01408 GFO_IDH_MocA: Oxidore 42.9 1.4E+02 0.003 27.2 8.4 34 833-866 73-108 (120)
312 COG0157 NadC Nicotinate-nucleo 42.5 1.2E+02 0.0025 32.8 8.5 92 732-850 160-259 (280)
313 cd02068 radical_SAM_B12_BD B12 42.4 2.5E+02 0.0055 26.1 10.2 60 740-799 3-65 (127)
314 cd00564 TMP_TenI Thiamine mono 42.0 1.9E+02 0.0042 28.7 10.1 74 753-852 95-177 (196)
315 PF14689 SPOB_a: Sensor_kinase 42.0 1.1E+02 0.0024 24.9 6.6 43 283-329 15-57 (62)
316 PRK10403 transcriptional regul 41.8 2E+02 0.0044 28.4 10.3 116 582-705 7-124 (215)
317 PRK03562 glutathione-regulated 41.4 1.6E+02 0.0035 35.9 10.8 93 729-851 423-516 (621)
318 cd04730 NPD_like 2-Nitropropan 41.1 3E+02 0.0064 28.6 11.6 84 745-853 94-185 (236)
319 PRK12724 flagellar biosynthesi 41.0 2.6E+02 0.0056 32.4 11.5 108 729-855 252-369 (432)
320 PRK06543 nicotinate-nucleotide 41.0 2E+02 0.0043 31.2 10.2 67 755-850 196-262 (281)
321 PRK00811 spermidine synthase; 40.8 1.3E+02 0.0027 32.7 8.9 55 730-786 101-162 (283)
322 TIGR00693 thiE thiamine-phosph 40.7 1.8E+02 0.004 29.3 9.7 70 757-851 101-178 (196)
323 COG3707 AmiR Response regulato 40.4 1.1E+02 0.0024 31.1 7.5 117 580-705 4-121 (194)
324 PF11044 TMEMspv1-c74-12: Plec 39.9 1.6E+02 0.0036 22.2 6.5 29 229-257 5-33 (49)
325 PRK06231 F0F1 ATP synthase sub 39.9 4.4E+02 0.0095 27.2 14.7 68 229-296 49-121 (205)
326 PRK07428 nicotinate-nucleotide 39.9 95 0.0021 33.9 7.6 70 756-851 200-269 (288)
327 cd04732 HisA HisA. Phosphorib 39.7 2.6E+02 0.0057 29.0 10.9 65 764-852 150-218 (234)
328 PF05690 ThiG: Thiazole biosyn 39.7 2.3E+02 0.0049 29.9 9.8 96 743-864 113-220 (247)
329 cd02065 B12-binding_like B12 b 39.1 1.4E+02 0.003 27.4 7.9 62 736-798 10-75 (125)
330 PRK05848 nicotinate-nucleotide 38.9 2.2E+02 0.0049 30.8 10.2 71 755-851 185-255 (273)
331 PRK13453 F0F1 ATP synthase sub 38.1 4.2E+02 0.0091 26.4 14.5 60 234-293 24-88 (173)
332 CHL00200 trpA tryptophan synth 37.7 81 0.0017 33.9 6.6 42 823-864 90-137 (263)
333 TIGR00736 nifR3_rel_arch TIM-b 37.6 1.3E+02 0.0027 31.8 7.9 56 775-852 162-219 (231)
334 PRK00748 1-(5-phosphoribosyl)- 37.1 1.2E+02 0.0026 31.6 7.8 66 763-852 149-219 (233)
335 PRK06096 molybdenum transport 36.3 1.2E+02 0.0026 33.0 7.7 71 755-851 192-262 (284)
336 TIGR02311 HpaI 2,4-dihydroxyhe 36.0 3.9E+02 0.0085 28.4 11.5 85 760-866 20-105 (249)
337 PRK06731 flhF flagellar biosyn 35.8 4.3E+02 0.0094 28.5 11.8 107 730-856 104-222 (270)
338 smart00448 REC cheY-homologous 35.6 1.5E+02 0.0032 20.4 7.0 50 583-634 2-51 (55)
339 TIGR00566 trpG_papA glutamine 35.6 93 0.002 31.5 6.4 48 732-780 2-49 (188)
340 PRK10100 DNA-binding transcrip 35.5 2.8E+02 0.0061 28.7 10.2 116 581-706 10-126 (216)
341 PRK14472 F0F1 ATP synthase sub 35.5 4.6E+02 0.01 26.1 14.6 17 237-253 27-43 (175)
342 PRK11677 hypothetical protein; 35.3 2.1E+02 0.0045 27.5 8.1 9 241-249 12-20 (134)
343 TIGR01163 rpe ribulose-phospha 34.9 3.1E+02 0.0067 27.8 10.4 100 733-853 84-193 (210)
344 TIGR00064 ftsY signal recognit 34.5 3.8E+02 0.0082 28.9 11.3 109 729-852 100-224 (272)
345 PRK14974 cell division protein 34.5 3.7E+02 0.0081 30.0 11.4 107 729-856 168-290 (336)
346 TIGR03151 enACPred_II putative 33.6 2.9E+02 0.0063 30.4 10.4 83 745-852 101-189 (307)
347 PRK11889 flhF flagellar biosyn 33.6 4.5E+02 0.0097 30.3 11.7 108 729-856 269-388 (436)
348 TIGR00735 hisF imidazoleglycer 33.5 2.9E+02 0.0064 29.3 10.2 42 824-865 199-247 (254)
349 PRK11840 bifunctional sulfur c 33.3 4.7E+02 0.01 29.0 11.5 93 747-865 191-295 (326)
350 cd04727 pdxS PdxS is a subunit 33.1 1.7E+02 0.0037 31.6 8.0 28 824-851 194-223 (283)
351 KOG1978 DNA mismatch repair pr 33.1 39 0.00083 40.5 3.5 25 481-505 51-75 (672)
352 PLN02589 caffeoyl-CoA O-methyl 33.1 1.7E+02 0.0036 31.2 8.1 54 730-783 105-165 (247)
353 TIGR00095 RNA methyltransferas 32.7 1.3E+02 0.0028 30.5 6.9 55 730-784 73-131 (189)
354 cd04722 TIM_phosphate_binding 32.6 2.5E+02 0.0055 27.5 9.2 57 773-852 135-198 (200)
355 PRK05458 guanosine 5'-monophos 32.1 1.3E+02 0.0028 33.5 7.1 67 762-851 99-166 (326)
356 PRK09174 F0F1 ATP synthase sub 32.0 5.8E+02 0.013 26.3 14.8 24 255-278 85-108 (204)
357 PRK07649 para-aminobenzoate/an 32.0 57 0.0012 33.3 4.2 48 732-780 2-49 (195)
358 TIGR01037 pyrD_sub1_fam dihydr 32.0 72 0.0016 34.9 5.3 48 824-871 234-287 (300)
359 PRK05282 (alpha)-aspartyl dipe 31.6 2.1E+02 0.0046 30.2 8.4 63 729-798 31-99 (233)
360 PRK07259 dihydroorotate dehydr 31.2 2.8E+02 0.006 30.3 9.8 48 824-871 234-287 (301)
361 PRK11359 cyclic-di-GMP phospho 30.7 2.8E+02 0.0062 34.5 11.1 105 743-869 681-796 (799)
362 cd00429 RPE Ribulose-5-phospha 30.4 4.1E+02 0.009 26.8 10.4 87 745-852 97-193 (211)
363 PRK05703 flhF flagellar biosyn 30.2 3.8E+02 0.0083 31.0 11.0 109 729-856 251-368 (424)
364 COG0626 MetC Cystathionine bet 30.2 3.5E+02 0.0077 30.9 10.4 53 729-782 102-157 (396)
365 cd00331 IGPS Indole-3-glycerol 29.9 1.8E+02 0.004 29.9 7.7 43 824-866 72-116 (217)
366 PRK08476 F0F1 ATP synthase sub 29.8 5.1E+02 0.011 24.9 14.2 25 231-255 10-34 (141)
367 PRK06559 nicotinate-nucleotide 29.8 3.4E+02 0.0073 29.7 9.7 66 756-850 201-266 (290)
368 PF02581 TMP-TENI: Thiamine mo 29.7 2.9E+02 0.0063 27.6 8.9 82 744-851 87-175 (180)
369 PRK11677 hypothetical protein; 29.7 5.1E+02 0.011 24.9 10.9 27 233-259 8-34 (134)
370 PF06295 DUF1043: Protein of u 29.5 4.9E+02 0.011 24.6 10.3 13 316-328 68-80 (128)
371 PRK13461 F0F1 ATP synthase sub 29.4 5.4E+02 0.012 25.1 14.5 20 235-254 12-31 (159)
372 TIGR00343 pyridoxal 5'-phospha 29.3 78 0.0017 34.2 4.7 41 824-864 197-244 (287)
373 PF01564 Spermine_synth: Sperm 29.3 99 0.0021 32.9 5.6 68 730-798 101-179 (246)
374 PF07851 TMPIT: TMPIT-like pro 28.8 7.2E+02 0.016 27.7 12.1 77 258-336 8-88 (330)
375 TIGR01163 rpe ribulose-phospha 28.4 3.6E+02 0.0079 27.3 9.6 56 788-866 43-99 (210)
376 PLN02781 Probable caffeoyl-CoA 28.0 2.2E+02 0.0047 30.0 7.9 54 730-783 94-153 (234)
377 TIGR00262 trpA tryptophan synt 27.9 7.4E+02 0.016 26.4 12.0 97 732-854 119-228 (256)
378 PF10669 Phage_Gp23: Protein g 27.8 4.4E+02 0.0095 23.5 12.3 18 273-290 63-80 (121)
379 PLN02274 inosine-5'-monophosph 27.8 7E+02 0.015 29.6 12.8 99 729-852 260-379 (505)
380 PRK06106 nicotinate-nucleotide 27.4 1.8E+02 0.004 31.5 7.2 68 755-851 197-264 (281)
381 PF01729 QRPTase_C: Quinolinat 27.2 2E+02 0.0044 28.7 7.0 71 755-851 83-153 (169)
382 PRK14473 F0F1 ATP synthase sub 27.2 6E+02 0.013 24.9 15.6 26 230-255 10-35 (164)
383 PRK09016 quinolinate phosphori 27.1 2E+02 0.0044 31.4 7.5 68 755-851 211-278 (296)
384 PRK13566 anthranilate synthase 26.7 1.8E+02 0.004 36.0 7.9 52 727-780 524-575 (720)
385 PRK06978 nicotinate-nucleotide 26.5 1.9E+02 0.0042 31.6 7.2 67 755-850 208-274 (294)
386 cd01748 GATase1_IGP_Synthase T 26.4 2.4E+02 0.0053 28.5 7.8 42 732-780 1-42 (198)
387 PLN02823 spermine synthase 26.3 1.6E+02 0.0034 33.0 6.7 55 730-786 128-188 (336)
388 PRK03958 tRNA 2'-O-methylase; 26.2 4.8E+02 0.01 26.2 9.3 64 730-798 32-98 (176)
389 PRK05637 anthranilate synthase 25.8 1.3E+02 0.0028 31.2 5.5 49 730-780 2-50 (208)
390 PF07652 Flavi_DEAD: Flaviviru 25.6 3.7E+02 0.0079 26.3 8.1 28 728-755 32-59 (148)
391 COG0159 TrpA Tryptophan syntha 25.5 1.5E+02 0.0033 31.8 6.1 43 823-865 93-144 (265)
392 PRK01130 N-acetylmannosamine-6 25.2 2E+02 0.0042 29.8 6.9 42 824-866 56-116 (221)
393 TIGR00417 speE spermidine synt 25.2 3.8E+02 0.0082 28.8 9.3 67 730-798 97-174 (270)
394 TIGR00336 pyrE orotate phospho 25.2 3.2E+02 0.0068 27.2 8.1 33 726-758 105-140 (173)
395 cd01080 NAD_bind_m-THF_DH_Cycl 25.0 1.9E+02 0.0042 28.8 6.4 58 727-786 42-99 (168)
396 PRK14722 flhF flagellar biosyn 25.0 4.3E+02 0.0093 30.0 9.9 94 730-842 168-265 (374)
397 COG0813 DeoD Purine-nucleoside 24.7 78 0.0017 32.8 3.5 24 389-412 19-42 (236)
398 PRK12723 flagellar biosynthesi 24.7 6.9E+02 0.015 28.6 11.6 107 729-855 206-322 (388)
399 COG2061 ACT-domain-containing 24.6 2.7E+02 0.0058 27.2 6.8 59 732-791 53-130 (170)
400 PF00430 ATP-synt_B: ATP synth 24.6 5.7E+02 0.012 23.7 12.7 56 241-296 12-72 (132)
401 PLN02476 O-methyltransferase 24.6 2.5E+02 0.0054 30.5 7.6 54 730-783 144-203 (278)
402 PLN02366 spermidine synthase 24.5 3.8E+02 0.0083 29.5 9.2 56 730-786 116-177 (308)
403 PRK06774 para-aminobenzoate sy 24.4 1.3E+02 0.0027 30.5 5.1 48 732-780 2-49 (191)
404 PRK04180 pyridoxal biosynthesi 24.4 1.2E+02 0.0026 32.9 5.1 42 824-865 203-251 (293)
405 PRK02083 imidazole glycerol ph 24.3 5.3E+02 0.011 27.3 10.2 43 824-866 197-246 (253)
406 PTZ00314 inosine-5'-monophosph 24.2 5.9E+02 0.013 30.1 11.3 102 729-852 253-372 (495)
407 PLN02716 nicotinate-nucleotide 23.8 3.9E+02 0.0085 29.4 8.9 73 755-850 206-287 (308)
408 PLN02335 anthranilate synthase 23.5 2.3E+02 0.005 29.6 7.0 51 729-780 18-68 (222)
409 PRK08007 para-aminobenzoate sy 23.5 97 0.0021 31.3 4.1 49 732-781 2-50 (187)
410 COG2820 Udp Uridine phosphoryl 23.4 1.7E+02 0.0037 30.8 5.7 25 388-413 21-45 (248)
411 cd01948 EAL EAL domain. This d 23.2 2.6E+02 0.0056 28.7 7.5 94 743-858 135-239 (240)
412 cd04740 DHOD_1B_like Dihydroor 23.0 1.2E+02 0.0027 32.9 5.1 48 824-871 231-284 (296)
413 KOG1562 Spermidine synthase [A 23.0 2.7E+02 0.0059 30.4 7.2 62 731-793 147-214 (337)
414 cd01573 modD_like ModD; Quinol 22.8 2.9E+02 0.0064 29.8 7.8 70 756-851 187-256 (272)
415 PRK05286 dihydroorotate dehydr 22.7 83 0.0018 35.3 3.7 47 824-870 289-342 (344)
416 PF13659 Methyltransf_26: Meth 22.7 2.3E+02 0.005 25.4 6.2 54 730-784 24-80 (117)
417 PRK04457 spermidine synthase; 22.4 2.5E+02 0.0055 30.0 7.3 68 729-798 90-165 (262)
418 PRK12704 phosphodiesterase; Pr 22.3 78 0.0017 37.6 3.5 43 826-868 251-295 (520)
419 KOG1478 3-keto sterol reductas 22.2 53 0.0012 34.8 1.8 28 516-553 12-39 (341)
420 PRK13141 hisH imidazole glycer 22.2 3.7E+02 0.0081 27.4 8.2 43 731-780 1-43 (205)
421 PF05768 DUF836: Glutaredoxin- 22.1 1.9E+02 0.0042 24.7 5.1 66 762-865 16-81 (81)
422 PRK13454 F0F1 ATP synthase sub 21.9 8.2E+02 0.018 24.5 14.6 31 257-287 65-95 (181)
423 PRK14723 flhF flagellar biosyn 21.8 6.4E+02 0.014 31.6 11.1 106 730-855 216-333 (767)
424 TIGR01425 SRP54_euk signal rec 21.8 6.9E+02 0.015 29.0 10.9 67 729-799 128-207 (429)
425 PRK07695 transcriptional regul 21.6 4.7E+02 0.01 26.5 8.8 66 759-850 102-174 (201)
426 PRK13125 trpA tryptophan synth 21.6 2.4E+02 0.0053 29.8 6.8 34 823-856 73-113 (244)
427 PRK10037 cell division protein 21.6 3.8E+02 0.0082 28.2 8.4 13 728-740 29-41 (250)
428 PRK13460 F0F1 ATP synthase sub 21.5 8E+02 0.017 24.3 15.8 61 238-298 26-91 (173)
429 KOG0020 Endoplasmic reticulum 21.4 2.4E+02 0.0051 32.7 6.7 16 481-496 143-158 (785)
430 TIGR00734 hisAF_rel hisA/hisF 21.2 4.1E+02 0.0089 27.6 8.3 55 775-852 155-212 (221)
431 smart00052 EAL Putative diguan 21.1 4E+02 0.0086 27.3 8.4 93 744-858 137-240 (241)
432 PF07492 Trehalase_Ca-bi: Neut 21.0 67 0.0015 22.2 1.5 12 479-490 13-24 (30)
433 PRK06843 inosine 5-monophospha 20.8 9.3E+02 0.02 27.7 11.5 101 729-852 165-284 (404)
434 TIGR03128 RuMP_HxlA 3-hexulose 20.8 8.7E+02 0.019 24.5 14.3 95 743-865 92-203 (206)
435 PRK11475 DNA-binding transcrip 20.8 5.1E+02 0.011 26.6 8.8 100 604-707 16-115 (207)
436 cd00532 MGS-like MGS-like doma 20.6 2.8E+02 0.006 25.4 6.2 51 745-796 34-95 (112)
437 cd06346 PBP1_ABC_ligand_bindin 20.6 8E+02 0.017 26.4 11.0 65 731-798 139-214 (312)
438 PRK10060 RNase II stability mo 20.5 6.4E+02 0.014 31.0 11.1 106 743-870 544-660 (663)
439 PRK01033 imidazole glycerol ph 20.5 3.8E+02 0.0082 28.6 8.1 54 776-852 168-225 (258)
440 COG3967 DltE Short-chain dehyd 20.4 60 0.0013 33.4 1.8 17 514-530 12-28 (245)
441 PRK04338 N(2),N(2)-dimethylgua 20.4 5.1E+02 0.011 29.5 9.5 63 730-798 82-147 (382)
442 PRK04302 triosephosphate isome 20.4 9.6E+02 0.021 24.8 11.9 29 824-852 173-201 (223)
443 COG0421 SpeE Spermidine syntha 20.3 2.2E+02 0.0048 31.0 6.2 55 730-786 101-161 (282)
444 PRK13585 1-(5-phosphoribosyl)- 20.3 6.5E+02 0.014 26.2 9.8 79 761-863 150-238 (241)
445 PRK12727 flagellar biosynthesi 20.3 5.6E+02 0.012 30.6 9.8 58 729-788 380-440 (559)
446 cd00381 IMPDH IMPDH: The catal 20.1 9.7E+02 0.021 26.5 11.5 29 824-852 197-225 (325)
447 PF02882 THF_DHG_CYH_C: Tetrah 20.0 1.8E+02 0.0039 28.7 5.0 59 727-787 34-92 (160)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=1.2e-61 Score=610.20 Aligned_cols=505 Identities=36% Similarity=0.522 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q 002821 270 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 349 (876)
Q Consensus 270 ~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~ 349 (876)
+++++++++.|++|++++||||||||++|+|+++++.....++.+++|++.+..++++|..+|+++++++|++++++.++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34566777888999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccc
Q 002821 350 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 429 (876)
Q Consensus 350 ~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 429 (876)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998887754321
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCC
Q 002821 430 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 509 (876)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s 509 (876)
..+...+.|+|.|+|+|||++.++++|+||++.+.+
T Consensus 439 --------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 474 (919)
T PRK11107 439 --------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS 474 (919)
T ss_pred --------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC
Confidence 112235889999999999999999999999999998
Q ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECC
Q 002821 510 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 589 (876)
Q Consensus 510 ~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~ 589 (876)
+++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........ .......+.|.+++++|+
T Consensus 475 ~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~ 544 (919)
T PRK11107 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEP 544 (919)
T ss_pred CCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeC
Confidence 8888999999999999999999999999999999999999999965432110 111234578899999999
Q ss_pred chhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEecc
Q 002821 590 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 669 (876)
Q Consensus 590 ~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 669 (876)
++..+......|..+|+.+..+.+..+ + ....++.++++........... .....+..... ...++++..+
T Consensus 545 ~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~~~~~ 615 (919)
T PRK11107 545 NSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPLTM--LHERLAKAKSM-TDFLILALPC 615 (919)
T ss_pred CHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCHHH--HHHHHHhhhhc-CCcEEEEeCC
Confidence 999999999999999999999988776 2 2345777777766543322211 11222221111 2223333332
Q ss_pred cCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHH
Q 002821 670 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 749 (876)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl~~~L 749 (876)
....... .....+...++.||+....+...+............. .......+.+|||||||+.++..++.+|
T Consensus 616 ~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~vLivdd~~~~~~~l~~~L 687 (919)
T PRK11107 616 HEQVLAE-QLKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLP-------PTDESRLPLTVMAVDDNPANLKLIGALL 687 (919)
T ss_pred cchhhHH-HHhhCCCceEECCCCCHHHHHHHHHHhhccccccccc-------ccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 2221111 1122355678999999999888887654211111000 0011123568999999999999999999
Q ss_pred hHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEE
Q 002821 750 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 829 (876)
Q Consensus 750 ~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa 829 (876)
+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||+++++.||+... ..++|||+
T Consensus 688 ~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~--------------------~~~~pii~ 746 (919)
T PRK11107 688 EEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPH--------------------NQNTPIIA 746 (919)
T ss_pred HHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhccc--------------------CCCCCEEE
Confidence 999999999999999999985 578999999999999999999999997431 34689999
Q ss_pred EcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 830 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 830 lTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
+|++...+...+|+++||++|+.||++.++|...+.+++..
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999754
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=7.7e-61 Score=593.70 Aligned_cols=489 Identities=29% Similarity=0.449 Sum_probs=388.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002821 263 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 342 (876)
Q Consensus 263 ~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie 342 (876)
.+++.++++++++++++|++|+++|||||||||++|+|++++|.....+++++++++.+..++++|..+|+++|+++|++
T Consensus 430 e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie 509 (924)
T PRK10841 430 EESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIE 509 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677788888999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred cCCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEE
Q 002821 343 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 422 (876)
Q Consensus 343 ~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~ 422 (876)
++.+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+|||.||++||+|||+.|.|.|.+..
T Consensus 510 ~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~ 589 (924)
T PRK10841 510 SEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRV 589 (924)
T ss_pred CCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999998887753
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccc
Q 002821 423 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 502 (876)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 502 (876)
.+ ..+.|+|.|||+||+++.+++||+|
T Consensus 590 ~~-----------------------------------------------------~~l~i~V~DtG~GI~~e~~~~lFep 616 (924)
T PRK10841 590 DG-----------------------------------------------------DYLSFRVRDTGVGIPAKEVVRLFDP 616 (924)
T ss_pred eC-----------------------------------------------------CEEEEEEEEcCcCCCHHHHHHHhcc
Confidence 11 2478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCc
Q 002821 503 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 582 (876)
Q Consensus 503 F~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 582 (876)
|++.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+....... ........|.
T Consensus 617 F~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~------------~~~~~~~~g~ 684 (924)
T PRK10841 617 FFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ------------KKGVEGLQGK 684 (924)
T ss_pred cccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc------------cccCcccCCC
Confidence 9999887777788999999999999999999999999999999999999986432111 1122346788
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++.+++........+++++|+.+....... ....+.++.|............ ...
T Consensus 685 ~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~---------~~~~d~~i~d~~~~~~~~~~~~---~~~---------- 742 (924)
T PRK10841 685 RCWLAVRNASLEQFLETLLQRSGIQVQRYEGQE---------PTPEDVLITDDPVQKKWQGRAV---ITF---------- 742 (924)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCeEEEccccc---------CCcCcEEEEcCccccccchhhh---hhh----------
Confidence 999999999888999999999999988765321 1122334443321110000000 000
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhccCCCCeEEEEeCCHHH
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVN 741 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ILvVdDn~~n 741 (876)
........ ........+.+|.....+...+.+...............+. ........+.+|||||||+.+
T Consensus 743 ---~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~ 813 (924)
T PRK10841 743 ---CRRHIGIP------LEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVDDHPIN 813 (924)
T ss_pred ---hhccccCh------hhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEECCCHHH
Confidence 00000000 00011123445666666666665555322211111100000 001112245799999999999
Q ss_pred HHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCC
Q 002821 742 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 821 (876)
Q Consensus 742 ~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 821 (876)
+..+..+|++.||.|.++.||.+|++.+. .+.||+||||++||+|||+++++.||+.
T Consensus 814 ~~~l~~~L~~~G~~v~~a~~g~eal~~l~-~~~~DlVl~D~~mP~mdG~el~~~ir~~---------------------- 870 (924)
T PRK10841 814 RRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLTDVNMPNMDGYRLTQRLRQL---------------------- 870 (924)
T ss_pred HHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhc----------------------
Confidence 99999999999999999999999999985 5679999999999999999999999974
Q ss_pred CCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 822 NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 822 ~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
...+|||++|++...+...+|+++||++|+.||++.++|...|.++...
T Consensus 871 ~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 871 GLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 2368999999999999999999999999999999999999999988653
No 3
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-63 Score=596.35 Aligned_cols=770 Identities=33% Similarity=0.385 Sum_probs=555.1
Q ss_pred CccceeEeecCCcceEEEeccCCChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHH-Hh
Q 002821 68 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI-EA 146 (876)
Q Consensus 68 ~~y~pv~~~~~~~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~-~~ 146 (876)
.+|.|+++...+..+...+|...+.+.+.+...++-++..+++.++....++..+...++-++...++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777766555554444443 22
Q ss_pred hcceeeeeeehHHHHHHHHHHhhccCcEEEEeeccCCCCCceeecccccCCCcceeEeeccCCCcccccceeee--eccc
Q 002821 147 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR--FKQK 224 (876)
Q Consensus 147 ~~g~~~~~~~v~~l~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 224 (876)
...+-...++........++....+......++..........+|+........+++....+..+.+.+...++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 22444455566555555555555444444445444444444456666666666666666666666666666666 3333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhhhhhHHHHHHHHH
Q 002821 225 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 302 (876)
Q Consensus 225 ~~~~~~~~~~~~~~l~i~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~ae~a~~aks~--fla~iSHElRTPL~~I~g~~ 302 (876)
..+.+.++..............+.......|...++.....+.+.....+++...+++ |+++++|||||||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 4445555555544444444455566677777777777777777777788888888888 999999999999999 888
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeC
Q 002821 303 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 382 (876)
Q Consensus 303 ~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~ 382 (876)
..+.++..+.+++.+.+..+.++..++.++|+++|.+++++|.+++...+|+++.+++.+++.+...+..++..+....+
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 002821 383 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 462 (876)
Q Consensus 383 ~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (876)
...|..+.+|+.+++||+.|+++||+|||..|+|.+++++.+.......+.... ....+..+.........|. ...
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~-~~e~~~~~~~~~~~~~~~~--~~~- 397 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRA-KEEAHMAGKARIDFLQKMS--HAM- 397 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhh-hhhhhhccchhhhHHHHhc--ccc-
Confidence 999999999999999999999999999999999999998876543322211000 0000001110000000000 000
Q ss_pred CCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhh-hcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC
Q 002821 463 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR-IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 541 (876)
Q Consensus 463 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~-iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 541 (876)
..................+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|++||++++++|+|.+.+.+..
T Consensus 398 -~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~ 476 (786)
T KOG0519|consen 398 -RAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCI 476 (786)
T ss_pred -ccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhh
Confidence 00000000011112345688999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHH
Q 002821 542 NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 621 (876)
Q Consensus 542 g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~ 621 (876)
..|++|+|++++....+......... .......+.|..+.+.+....+.++.+...+..|+.++...+...++-..
T Consensus 477 ~~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 552 (786)
T KOG0519|consen 477 SLGKTFSFTLDLLTNLPKSVVGDEKR----LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFL 552 (786)
T ss_pred ccCceeeEEEEeccCCCccchhhhhh----hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhc
Confidence 99999999999977655433211111 12334567788888777777777777777888888888876544444333
Q ss_pred hcCCCc-ceEEEeeccccccCc---chhHHHHHHHhhcCCC-CCceEEEEecccCccccCCCCCCCCCCceeccCCchHH
Q 002821 622 ASGSKI-INMILVEQEVWEKDT---SVSTLFVNNLRKLGCG-FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 696 (876)
Q Consensus 622 ~~~~~~-~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~ 696 (876)
...... ...+.++...|.... +....+....+..... .....+.++.............+........+|.....
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 632 (786)
T KOG0519|consen 553 DLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLC 632 (786)
T ss_pred ccccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHH
Confidence 222222 444555665553332 1111111111111110 01222233322222222222222222244556667777
Q ss_pred HHHHHHHHhcC-CCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCc
Q 002821 697 LAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 775 (876)
Q Consensus 697 l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~ 775 (876)
+..+.+..++. +..................+.|++|||||||++|++|++.+|+++|++++++.+|.||+++++.++.|
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~~~y 712 (786)
T KOG0519|consen 633 LEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSY 712 (786)
T ss_pred HHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCCCcc
Confidence 77777766654 22222222222222245677899999999999999999999999999999999999999999878999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC
Q 002821 776 DACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 855 (876)
Q Consensus 776 DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~ 855 (876)
|+||||+|||+|||+|++++||+.+ .+++|||||||+++++..++|+++|||+||+|||
T Consensus 713 ~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~ 771 (786)
T KOG0519|consen 713 DVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVALTADADPSTEEECLEVGMDGYLSKPF 771 (786)
T ss_pred cEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEEEecCCcHHHHHHHHHhCCceEEcccc
Confidence 9999999999999999999999854 2689999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhCC
Q 002821 856 EAEQLYREVSRFFP 869 (876)
Q Consensus 856 ~~~~L~~~l~~~~~ 869 (876)
+.+.|..++.+|+.
T Consensus 772 ~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 772 TLEKLVKILREFLL 785 (786)
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999999875
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=1.1e-55 Score=558.77 Aligned_cols=369 Identities=39% Similarity=0.634 Sum_probs=325.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q 002821 270 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 349 (876)
Q Consensus 270 ~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~ 349 (876)
+.++++++++|++|+++|||||||||++|+|++++|.+..+++.+++|++.+..++++|..+++++++++|+|.+.+.++
T Consensus 454 ~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~~ 533 (968)
T TIGR02956 454 RAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSIS 533 (968)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 44567778889999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccc
Q 002821 350 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 429 (876)
Q Consensus 350 ~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 429 (876)
..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...++
T Consensus 534 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~---- 609 (968)
T TIGR02956 534 PRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD---- 609 (968)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998888754211
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCC
Q 002821 430 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 509 (876)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s 509 (876)
..+.|+|+|+|+|||++.+++||+||++.+
T Consensus 610 ------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-- 639 (968)
T TIGR02956 610 ------------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQAD-- 639 (968)
T ss_pred ------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhccC--
Confidence 117899999999999999999999999987
Q ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECC
Q 002821 510 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 589 (876)
Q Consensus 510 ~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~ 589 (876)
..+..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 640 ~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~--------------~------------ 693 (968)
T TIGR02956 640 GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDS--------------A------------ 693 (968)
T ss_pred CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccc--------------c------------
Confidence 34566899999999999999999999999999999999999998532110000 0
Q ss_pred chhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEecc
Q 002821 590 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 669 (876)
Q Consensus 590 ~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 669 (876)
.
T Consensus 694 -----------------------------------------------------------------------~-------- 694 (968)
T TIGR02956 694 -----------------------------------------------------------------------T-------- 694 (968)
T ss_pred -----------------------------------------------------------------------c--------
Confidence 0
Q ss_pred cCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHH
Q 002821 670 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 749 (876)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl~~~L 749 (876)
.. .....+.+|||||||+.++..+..+|
T Consensus 695 ---------~~-------------------------------------------~~~~~~~~iLvvdd~~~~~~~l~~~L 722 (968)
T TIGR02956 695 ---------LT-------------------------------------------VIDLPPQRVLLVEDNEVNQMVAQGFL 722 (968)
T ss_pred ---------cc-------------------------------------------cccccccceEEEcCcHHHHHHHHHHH
Confidence 00 00012347999999999999999999
Q ss_pred hHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEE
Q 002821 750 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 829 (876)
Q Consensus 750 ~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa 829 (876)
+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||+++++.||+..+. ..++|||+
T Consensus 723 ~~~g~~v~~~~~~~~a~~~l~-~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~-------------------~~~~pii~ 782 (968)
T TIGR02956 723 TRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPDGDGVTLLQQLRAIYGA-------------------KNEVKFIA 782 (968)
T ss_pred HHcCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHhCccc-------------------cCCCeEEE
Confidence 999999999999999999985 4789999999999999999999999974321 11389999
Q ss_pred EcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 830 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 830 lTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
+|++...+...+|+++||++|+.||++.++|...|.+++.
T Consensus 783 lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999874
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=4.5e-56 Score=549.16 Aligned_cols=371 Identities=33% Similarity=0.533 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q 002821 270 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 349 (876)
Q Consensus 270 ~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~ 349 (876)
.++++.++++|++|+++|||||||||++|.|+++++.++..+++++++++.+..++++|..++++++++++++++++.+.
T Consensus 273 e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 352 (779)
T PRK11091 273 QDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLD 352 (779)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEE
Confidence 34556667789999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccc
Q 002821 350 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 429 (876)
Q Consensus 350 ~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 429 (876)
..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+||++.|.|.|.+....
T Consensus 353 ~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~----- 427 (779)
T PRK11091 353 NQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE----- 427 (779)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc-----
Confidence 999999999999999999999999999999998888888999999999999999999999999998888774321
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccccccc-CC
Q 002821 430 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV-GP 508 (876)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~-~~ 508 (876)
...+.|+|.|||+|||++.+++||+|||++ +.
T Consensus 428 -----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~ 460 (779)
T PRK11091 428 -----------------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDS 460 (779)
T ss_pred -----------------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCC
Confidence 113789999999999999999999999999 56
Q ss_pred CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEEC
Q 002821 509 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 588 (876)
Q Consensus 509 s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd 588 (876)
+.++..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 461 ~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~-------------~------------ 515 (779)
T PRK11091 461 HGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED-------------A------------ 515 (779)
T ss_pred CCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc-------------c------------
Confidence 666668999999999999999999999999999999999999998432110000 0
Q ss_pred CchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEec
Q 002821 589 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 668 (876)
Q Consensus 589 ~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 668 (876)
+
T Consensus 516 ------------------------------------------------------------------------~------- 516 (779)
T PRK11091 516 ------------------------------------------------------------------------F------- 516 (779)
T ss_pred ------------------------------------------------------------------------c-------
Confidence 0
Q ss_pred ccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHH
Q 002821 669 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 748 (876)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl~~~ 748 (876)
... .....+.+||||||++.++..+..+
T Consensus 517 ----------~~~------------------------------------------~~~~~~~~ILivdD~~~~~~~l~~~ 544 (779)
T PRK11091 517 ----------DED------------------------------------------DMPLPALNILLVEDIELNVIVARSV 544 (779)
T ss_pred ----------ccc------------------------------------------cccccccceEEEcCCHHHHHHHHHH
Confidence 000 0001235899999999999999999
Q ss_pred HhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCC-CcE
Q 002821 749 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VPI 827 (876)
Q Consensus 749 L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~-~pI 827 (876)
|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+..+ ..+ +||
T Consensus 545 L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~--------------------~~~~~~i 603 (779)
T PRK11091 545 LEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYP--------------------REDLPPL 603 (779)
T ss_pred HHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccc--------------------cCCCCcE
Confidence 9999999999999999999985 567999999999999999999999997421 124 499
Q ss_pred EEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 828 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 828 IalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
|++|++... ...+|+++||++|+.||++.++|...+.+++..
T Consensus 604 i~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 604 VALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 999998765 467899999999999999999999999998754
No 6
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=5.6e-55 Score=549.73 Aligned_cols=427 Identities=34% Similarity=0.514 Sum_probs=335.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002821 266 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 345 (876)
Q Consensus 266 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~ 345 (876)
+.+.+++++.++..|++|++++||||||||++|+|++++|.....+.+++++++.+..++++|..+++++|+++|+|+++
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~ 463 (921)
T PRK15347 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQ 463 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566777788899999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeec
Q 002821 346 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 425 (876)
Q Consensus 346 ~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~ 425 (876)
+.++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++...+
T Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~~- 542 (921)
T PRK15347 464 MTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRHE- 542 (921)
T ss_pred ccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEcC-
Confidence 9999999999999999999999999999999999998888888999999999999999999999999999888774321
Q ss_pred cccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccc
Q 002821 426 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 505 (876)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q 505 (876)
..+.|+|+|||+||+++.+++||+||+|
T Consensus 543 ----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 570 (921)
T PRK15347 543 ----------------------------------------------------QQLCFTVEDTGCGIDIQQQQQIFTPFYQ 570 (921)
T ss_pred ----------------------------------------------------CEEEEEEEEcCCCCCHHHHHHHhcCccc
Confidence 2478999999999999999999999998
Q ss_pred cCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEE
Q 002821 506 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 585 (876)
Q Consensus 506 ~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 585 (876)
.+. ..+|+||||+||++++++|||+|+++|.+|+||+|+|++|+........ +.+..
T Consensus 571 ~~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----------------~~~~~-- 627 (921)
T PRK15347 571 ADT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----------------LKGEL-- 627 (921)
T ss_pred CCC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----------------ccccc--
Confidence 754 3479999999999999999999999999999999999999854211100 00000
Q ss_pred EECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEE
Q 002821 586 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 665 (876)
Q Consensus 586 vvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 665 (876)
.........+..||............. .
T Consensus 628 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~------------------------------- 655 (921)
T PRK15347 628 ------SAPLALHRQLSAWGITCQPGHQNPALL---------------D------------------------------- 655 (921)
T ss_pred ------cchHHHHHHHHHcCCcccccccchhhc---------------c-------------------------------
Confidence 000112233444554432221000000 0
Q ss_pred EecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHH
Q 002821 666 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 745 (876)
Q Consensus 666 l~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl 745 (876)
+.. +.-+..+...+............. ..+ ....+.+||||||++.++..+
T Consensus 656 -------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~iLivdd~~~~~~~l 706 (921)
T PRK15347 656 -------------------PEL---AYLPGRLYDLLQQIIQGAPNEPVI--NLP-----LQPWQLQILLVDDVETNRDII 706 (921)
T ss_pred -------------------hhh---hhcchHHHHHHHHHhhcCCCcccc--cCC-----CCcccCCEEEEeCCHHHHHHH
Confidence 000 000001111111111110000000 000 112245899999999999999
Q ss_pred HHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCC
Q 002821 746 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 825 (876)
Q Consensus 746 ~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 825 (876)
..+|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+.+.. ..+++
T Consensus 707 ~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~------------------~~~~~ 767 (921)
T PRK15347 707 GMMLVELGQQVTTAASGTEALELGR-QHRFDLVLMDIRMPGLDGLETTQLWRDDPNN------------------LDPDC 767 (921)
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhh------------------cCCCC
Confidence 9999999999999999999999885 5789999999999999999999999974311 13578
Q ss_pred cEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 826 PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 826 pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
|||++|++...+...+|+++||++|+.||++.++|..++.++.
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=4.6e-54 Score=540.77 Aligned_cols=370 Identities=33% Similarity=0.551 Sum_probs=323.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002821 265 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 344 (876)
Q Consensus 265 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g 344 (876)
+..+.+.+++++.++|++|+++|||||||||++|.|++++|.+...++.++++++.+..++++|..++++++++++++.|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~ 508 (914)
T PRK11466 429 EHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG 508 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445566777888999999999999999999999999999988888889999999999999999999999999999988
Q ss_pred C--ceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEE
Q 002821 345 K--LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 422 (876)
Q Consensus 345 ~--~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~ 422 (876)
. +.++..+|++.+++++++..+...+..|++.+.+++++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+..
T Consensus 509 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~ 588 (914)
T PRK11466 509 GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRT 588 (914)
T ss_pred CCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEE
Confidence 4 56777899999999999999999999999999999988888889999999999999999999999999998887643
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccc
Q 002821 423 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 502 (876)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 502 (876)
.+ ..+.|.|.|||+|||++.++++|+|
T Consensus 589 ~~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~ 615 (914)
T PRK11466 589 DG-----------------------------------------------------EQWLVEVEDSGCGIDPAKLAEIFQP 615 (914)
T ss_pred cC-----------------------------------------------------CEEEEEEEECCCCCCHHHHHHHhch
Confidence 11 2477999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCc
Q 002821 503 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 582 (876)
Q Consensus 503 F~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 582 (876)
|++.+ ...+|+||||+||+++++.|||+|.++|.+|+||+|+|++|+........ .
T Consensus 616 f~~~~----~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~---------------~----- 671 (914)
T PRK11466 616 FVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP---------------K----- 671 (914)
T ss_pred hhcCC----CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccc---------------c-----
Confidence 99863 24579999999999999999999999999999999999999743210000 0
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
T Consensus 672 -------------------------------------------------------------------------------- 671 (914)
T PRK11466 672 -------------------------------------------------------------------------------- 671 (914)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHH
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 742 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~ 742 (876)
... . .....+++|||||||+.++
T Consensus 672 ----------------~~~--------~---------------------------------~~~~~~~~vLivdD~~~~~ 694 (914)
T PRK11466 672 ----------------TVN--------Q---------------------------------AVRLDGLRLLLIEDNPLTQ 694 (914)
T ss_pred ----------------ccc--------c---------------------------------ccccCCcceEEEeCCHHHH
Confidence 000 0 0001245899999999999
Q ss_pred HHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 002821 743 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 822 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 822 (876)
..+..+|+..|+.|.++.+|.+|++.+...+.||+||||++||+|||++++++||+. .
T Consensus 695 ~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~----------------------~ 752 (914)
T PRK11466 695 RITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ----------------------Y 752 (914)
T ss_pred HHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh----------------------C
Confidence 999999999999999999999999987544679999999999999999999999973 3
Q ss_pred CCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 823 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 823 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
+++|||++|++...+...+|+++|+++|+.||++.++|...|.+++..
T Consensus 753 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 753 PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 468999999999999999999999999999999999999999998753
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=1.8e-49 Score=512.02 Aligned_cols=382 Identities=31% Similarity=0.475 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 261 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT-QQDYVRTAQASGKALVSLINEVLDQA 339 (876)
Q Consensus 261 ~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~-~~~~l~~i~~~~~~L~~lindlLd~s 339 (876)
+..+++.+.+++++++..++.+|+++|||||||||++|.|++++|.+...+.+ ..++++.+..++++|..+++++++++
T Consensus 693 ~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~ 772 (1197)
T PRK09959 693 DLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVD 772 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666677778889999999999999999999999999976655544 45788999999999999999999999
Q ss_pred HHhcCCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEE
Q 002821 340 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 419 (876)
Q Consensus 340 kie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~ 419 (876)
+++++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+.
T Consensus 773 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~ 852 (1197)
T PRK09959 773 KIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKIT 852 (1197)
T ss_pred HhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999999999999999998876543334468899999999999999999999999987776
Q ss_pred EEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhh
Q 002821 420 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 499 (876)
Q Consensus 420 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~i 499 (876)
+..... ..+...+.|+|.|+|+|||++.+++|
T Consensus 853 ~~~~~~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~i 884 (1197)
T PRK09959 853 TSLGHI------------------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQL 884 (1197)
T ss_pred EEEeee------------------------------------------------cCCceEEEEEEEEcCCCCCHHHHHHh
Confidence 543210 01123478999999999999999999
Q ss_pred cccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCccc
Q 002821 500 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 579 (876)
Q Consensus 500 F~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (876)
|+||++.+. .+..+|+||||+|||+|++.|||+|+++|.+|+||+|+|++|+......... .
T Consensus 885 F~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~-------------~--- 946 (1197)
T PRK09959 885 FKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATV-------------E--- 946 (1197)
T ss_pred hcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhccc-------------c---
Confidence 999998654 2455799999999999999999999999999999999999997421100000 0
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
T Consensus 947 -------------------------------------------------------------------------------- 946 (1197)
T PRK09959 947 -------------------------------------------------------------------------------- 946 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCH
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 739 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~ 739 (876)
. ... .| .....+.+||||||++
T Consensus 947 -~-----------------~~~--------~~--------------------------------~~~~~~~~iLivdd~~ 968 (1197)
T PRK09959 947 -A-----------------KAE--------QP--------------------------------ITLPEKLSILIADDHP 968 (1197)
T ss_pred -c-----------------ccc--------cc--------------------------------cccccCceEEEcCCCH
Confidence 0 000 00 0001135899999999
Q ss_pred HHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcc
Q 002821 740 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 819 (876)
Q Consensus 740 ~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~ 819 (876)
.++..+..+|+..|+.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 969 ~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~-------------------- 1027 (1197)
T PRK09959 969 TNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQ-------------------- 1027 (1197)
T ss_pred HHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc--------------------
Confidence 9999999999999999999999999999885 5789999999999999999999999963
Q ss_pred CCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 820 VSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 820 ~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+........+|+++|+++||.||++.++|...|.++..
T Consensus 1028 --~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1028 --NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred --CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 246899999999999999999999999999999999999999987653
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=5.6e-47 Score=463.45 Aligned_cols=240 Identities=20% Similarity=0.321 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002821 264 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 343 (876)
Q Consensus 264 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~ 343 (876)
+++.+++++++++.++|++|+++|||||||||++|.|++++|.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34666777888889999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEe
Q 002821 344 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 423 (876)
Q Consensus 344 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 423 (876)
|+..++..+|++.+++++++..+...+..|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766677899999999999999999999999999988877532
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccc
Q 002821 424 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 503 (876)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 503 (876)
.. ....+.|+|.|||+|||++.+++||+||
T Consensus 594 ~~--------------------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF 623 (894)
T PRK10618 594 ES--------------------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPF 623 (894)
T ss_pred cC--------------------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCcc
Confidence 11 1135789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 504 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 504 ~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
++.+. ..+..+|+||||+|||+||++|||+|+++|.+|+||+|+|++|+.
T Consensus 624 ~t~~~-~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 624 LNQTQ-GDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred ccCCC-CCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 98643 234567999999999999999999999999999999999999974
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1.9e-44 Score=446.66 Aligned_cols=363 Identities=19% Similarity=0.279 Sum_probs=291.6
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT-ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~-~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
+..+|++++||||||||++|.|+++++.+. ......+++++.+..+++++..++++++++++...+ ...++++.+
T Consensus 449 ~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~~ 524 (828)
T PRK13837 449 AVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLSE 524 (828)
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHHH
Confidence 567899999999999999999999987653 334567889999999999999999999999986544 346799999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC-CCeEEEEEEEeeccccchhhhhhh
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 436 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 436 (876)
++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++ .|.|.|++..........
T Consensus 525 ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~------ 596 (828)
T PRK13837 525 LVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV------ 596 (828)
T ss_pred HHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc------
Confidence 999999988753 45788888877654 446899999999999999999999985 467777765432100000
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002821 437 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 516 (876)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 516 (876)
. ......+...+.|+|+|+|+|||++.+++||+||++.+. +|
T Consensus 597 ------~--------------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G 638 (828)
T PRK13837 597 ------L--------------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GG 638 (828)
T ss_pred ------c--------------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CC
Confidence 0 000011234688999999999999999999999997432 79
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHH
Q 002821 517 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKV 596 (876)
Q Consensus 517 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v 596 (876)
+||||+|||++++.|||+|+++|.+|+||+|+|++|.......... .
T Consensus 639 ~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~-----------~---------------------- 685 (828)
T PRK13837 639 TGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQ-----------A---------------------- 685 (828)
T ss_pred CcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCcc-----------c----------------------
Confidence 9999999999999999999999999999999999997432110000 0
Q ss_pred HHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEecccCccccC
Q 002821 597 SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 676 (876)
Q Consensus 597 ~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 676 (876)
T Consensus 686 -------------------------------------------------------------------------------- 685 (828)
T PRK13837 686 -------------------------------------------------------------------------------- 685 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhHcCCEE
Q 002821 677 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 756 (876)
Q Consensus 677 ~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v 756 (876)
... |. ......+.+|||||||+.++..+...|...||.+
T Consensus 686 -~~~----------~~------------------------------~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v 724 (828)
T PRK13837 686 -FFG----------PG------------------------------PLPRGRGETVLLVEPDDATLERYEEKLAALGYEP 724 (828)
T ss_pred -cCC----------Cc------------------------------ccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEE
Confidence 000 00 0001124589999999999999999999999999
Q ss_pred EEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCC
Q 002821 757 VCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 835 (876)
Q Consensus 757 ~~a~~g~eA~~~~~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 835 (876)
+.+.++.+|++.+... ..||+||+ .||.|+|+++++.|+.. .+.+|||++|+...
T Consensus 725 ~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~----------------------~~~ipIIvls~~~~ 780 (828)
T PRK13837 725 VGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA----------------------APTLPIILGGNSKT 780 (828)
T ss_pred EEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh----------------------CCCCCEEEEeCCCc
Confidence 9999999999988432 35899999 79999999999999863 34689999999999
Q ss_pred HHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 836 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 836 ~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.....+++.+| ++||.||++.++|..+|.+++..
T Consensus 781 ~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 781 MALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred hhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 99999999999 99999999999999999998763
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-42 Score=355.44 Aligned_cols=227 Identities=27% Similarity=0.474 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEee
Q 002821 276 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT--QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 353 (876)
Q Consensus 276 a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~--~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~ 353 (876)
.++.+..|.|++||||||||+++.++++.|.+....+. ...++..-+...+||.+||||||.+||+.....+++.+.+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34567889999999999999999999999988765444 5688999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhHhhhcCCE-EEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC-eEEEEEEEeeccccchh
Q 002821 354 NLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 431 (876)
Q Consensus 354 ~L~~ll~~v~~~~~~~a~~k~i~-l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~ 431 (876)
|+...+..+++.|.....+..+. +.-.+ +..+.++..|+.++-||+.|+++||+||+|.| .|++.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998775544443 32233 44567889999999999999999999999874 677766421
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC
Q 002821 432 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 511 (876)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~ 511 (876)
..++.|+|.|.|.|||++++++||++||++|..++
T Consensus 372 ---------------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARs 406 (459)
T COG5002 372 ---------------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARS 406 (459)
T ss_pred ---------------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhh
Confidence 12578999999999999999999999999999999
Q ss_pred CCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002821 512 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 556 (876)
Q Consensus 512 ~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 556 (876)
|+.|||||||+|+|.+|+.|||.||.+|+.|+||+|+|+||....
T Consensus 407 R~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 407 RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred hcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 999999999999999999999999999999999999999998643
No 12
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=1.2e-37 Score=368.53 Aligned_cols=368 Identities=20% Similarity=0.240 Sum_probs=285.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEee
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-----LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 353 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~-----l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~ 353 (876)
...++++.++||+||||+.|.|+++++.... ......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3457899999999999999999999875321 224456788889999999999999999998743 3445678
Q ss_pred cHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC-eEEEEEEEeeccccchhh
Q 002821 354 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEV 432 (876)
Q Consensus 354 ~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~ 432 (876)
++..+++.+...+.. ...+++.+.+.+++..+ .+.+|+.+++||+.||+.||+||++.| .|.|.+.........
T Consensus 238 ~l~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~--- 312 (540)
T PRK13557 238 NLNGLVSGMGELAER-TLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDED--- 312 (540)
T ss_pred CHHHHHHHHHHHHHH-hcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccc---
Confidence 999999988776553 34577888777766654 477899999999999999999999654 444443221100000
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCC
Q 002821 433 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 512 (876)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 512 (876)
...| ....+...+.|+|.|+|+|||++.++++|+||++.+.
T Consensus 313 -------------------~~~~----------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 313 -------------------LAMY----------------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred -------------------cccc----------------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 0000 0011223578999999999999999999999997532
Q ss_pred CCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchh
Q 002821 513 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 592 (876)
Q Consensus 513 ~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~ 592 (876)
..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|......... +.
T Consensus 354 ~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------~~--------------- 404 (540)
T PRK13557 354 EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------QE--------------- 404 (540)
T ss_pred CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC--------------CC---------------
Confidence 3469999999999999999999999999999999999998743210000 00
Q ss_pred hHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEecccCc
Q 002821 593 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 672 (876)
Q Consensus 593 ~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 672 (876)
T Consensus 405 -------------------------------------------------------------------------------- 404 (540)
T PRK13557 405 -------------------------------------------------------------------------------- 404 (540)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhHc
Q 002821 673 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 752 (876)
Q Consensus 673 ~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl~~~L~~~ 752 (876)
.... ......+++||||||++..+..+..+|+..
T Consensus 405 -----~~~~-----------------------------------------~~~~~~~~~iliv~~~~~~~~~l~~~l~~~ 438 (540)
T PRK13557 405 -----PKAR-----------------------------------------AIDRGGTETILIVDDRPDVAELARMILEDF 438 (540)
T ss_pred -----CCCc-----------------------------------------ccccCCCceEEEEcCcHHHHHHHHHHHHhc
Confidence 0000 000112468999999999999999999999
Q ss_pred CCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEc
Q 002821 753 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 831 (876)
Q Consensus 753 g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 831 (876)
|+.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+. .+.+|||++|
T Consensus 439 ~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~----------------------~~~~~ii~~~ 496 (540)
T PRK13557 439 GYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRR----------------------QPKIKVLLTT 496 (540)
T ss_pred CCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHh----------------------CCCCcEEEEc
Confidence 9999999999999998753346999999999997 9999999999973 2468999999
Q ss_pred CCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 832 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 832 a~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
..........++.+|+++|+.||++.++|...+.+.+...
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 536 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGP 536 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCC
Confidence 9988888888999999999999999999999999877643
No 13
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-38 Score=357.93 Aligned_cols=225 Identities=24% Similarity=0.429 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEe
Q 002821 274 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVT-QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 350 (876)
Q Consensus 274 e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~-~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~ 350 (876)
.+.++.++.||+++||||||||++|+|.++.|... .++++ +.+.+..|...+++|.++|++|||++|+++|.++++.
T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~ 733 (890)
T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKL 733 (890)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccc
Confidence 34567789999999999999999999999998764 34444 7789999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCe-EEEEEEEeeccccc
Q 002821 351 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDS 429 (876)
Q Consensus 351 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~ 429 (876)
.+..+.+++.+++........... +.+.+++++| .+.+|...|+|||.|||+||+||++.|. |.|.++...
T Consensus 734 ~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~----- 805 (890)
T COG2205 734 DWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER----- 805 (890)
T ss_pred chhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec-----
Confidence 999999999999998776655444 6666777776 6889999999999999999999998875 777775422
Q ss_pred hhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCC
Q 002821 430 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 509 (876)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s 509 (876)
.++.|+|.|+|+|||++++++||++||+.++.
T Consensus 806 ------------------------------------------------~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~ 837 (890)
T COG2205 806 ------------------------------------------------ENVVFSVIDEGPGIPEGELERIFDKFYRGNKE 837 (890)
T ss_pred ------------------------------------------------ceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC
Confidence 35889999999999999999999999998763
Q ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002821 510 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 556 (876)
Q Consensus 510 ~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 556 (876)
.. ..|+|||||||+.+|+.|||+|++.+.+++|++|+|++|....
T Consensus 838 ~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 838 SA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 33 6899999999999999999999999999999999999998643
No 14
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=4e-37 Score=348.45 Aligned_cols=242 Identities=26% Similarity=0.386 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHHHHHHH
Q 002821 258 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-------VTQQDYVRTAQASGKALVS 330 (876)
Q Consensus 258 ~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-------~~~~~~l~~i~~~~~~L~~ 330 (876)
++.+....+.+.++++++..+++.+|++++||||||||++|.+++++|.....+ +..+++++.+..+.++|..
T Consensus 129 ~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (380)
T PRK09303 129 QLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIER 208 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666677899999999999999999999999999754322 2357788999999999999
Q ss_pred HHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhc
Q 002821 331 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 410 (876)
Q Consensus 331 lindlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKf 410 (876)
++++++++++.+.+...++..++++.+++++++..+...+..+++.+.++++...| .+.+|+.+|+||+.||++||+||
T Consensus 209 li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~ 287 (380)
T PRK09303 209 LITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKY 287 (380)
T ss_pred HHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999877766 58899999999999999999999
Q ss_pred cCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCC
Q 002821 411 TEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 489 (876)
Q Consensus 411 T~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 489 (876)
++. |.|.+.+... +...+.|+|.|+|+
T Consensus 288 ~~~~~~I~i~~~~~----------------------------------------------------~~~~v~i~V~D~G~ 315 (380)
T PRK09303 288 TPEGGTITLSMLHR----------------------------------------------------TTQKVQVSICDTGP 315 (380)
T ss_pred CCCCceEEEEEEec----------------------------------------------------CCCEEEEEEEEcCC
Confidence 976 4665554211 11247899999999
Q ss_pred CCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 490 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 490 GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
|||++.+++||+|||+.+. ++..+|+||||+||+++++.|||+|+++|.+++||+|+|++|+.
T Consensus 316 GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 316 GIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 9999999999999998765 44567999999999999999999999999999999999999974
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=9.1e-34 Score=326.79 Aligned_cols=221 Identities=26% Similarity=0.382 Sum_probs=190.4
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 002821 278 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 356 (876)
Q Consensus 278 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~ 356 (876)
+++.+|++++||||||||++|.|+++++.+... ++...++++.+..++++|..++++++++++++.+........+++.
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~ 281 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVP 281 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHH
Confidence 356689999999999999999999999876543 4456788999999999999999999999999998877667789999
Q ss_pred HHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC-eEEEEEEEeeccccchhhhhh
Q 002821 357 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETE 435 (876)
Q Consensus 357 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~ 435 (876)
.+++.+...+...+ .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 282 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------ 346 (430)
T PRK11006 282 MMLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------ 346 (430)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc------------
Confidence 99988877766555 67788888776654 588999999999999999999999764 566654321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCC
Q 002821 436 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 515 (876)
...+.|+|+|+|+|||++.++++|+|||+.+.+.++..+
T Consensus 347 -----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 385 (430)
T PRK11006 347 -----------------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTG 385 (430)
T ss_pred -----------------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCC
Confidence 124679999999999999999999999998887777788
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|..
T Consensus 386 G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 386 GSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 999999999999999999999999999999999999864
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=8e-33 Score=319.03 Aligned_cols=229 Identities=25% Similarity=0.374 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002821 265 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 344 (876)
Q Consensus 265 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g 344 (876)
.++++.++.++..+.+.+|++++||||||||+.|.+.++++.+. ...+. +.+.+..++|..++++++.+++++.+
T Consensus 197 ~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~ 271 (433)
T PRK10604 197 AFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRP 271 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455566667777788999999999999999999999988632 22222 23777889999999999999999999
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEee
Q 002821 345 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 424 (876)
Q Consensus 345 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 424 (876)
...+...++++.+++++++..+......+++++.+..+ +..+.+|+..+++|+.||++||+||+. |.|.|++...+
T Consensus 272 ~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~ 347 (433)
T PRK10604 272 QNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG 347 (433)
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC
Confidence 98888899999999999999998887777777765322 335678999999999999999999995 77777764321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccccc
Q 002821 425 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 504 (876)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 504 (876)
..+.|+|+|+|+|||++.+++||+||+
T Consensus 348 -----------------------------------------------------~~~~I~V~D~G~Gi~~e~~~~if~~f~ 374 (433)
T PRK10604 348 -----------------------------------------------------NQACLIVEDDGPGIPPEERERVFEPFV 374 (433)
T ss_pred -----------------------------------------------------CEEEEEEEEcCCCCCHHHHhhcCCCCc
Confidence 136899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 505 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 505 q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
+.+.++++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 375 r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 375 RLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred cCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 998887777889999999999999999999999999999999999999854
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=1e-31 Score=313.19 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeE
Q 002821 272 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 351 (876)
Q Consensus 272 ~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~ 351 (876)
+.++......+|++++||||||||++|.+.++.|.+.... ...+....+.....++..+++++++.++.+++...+...
T Consensus 258 ~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~ 336 (485)
T PRK10815 258 NERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRE 336 (485)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Confidence 3344444557899999999999999999999998765421 122334566778889999999999999999998888888
Q ss_pred eecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchh
Q 002821 352 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 431 (876)
Q Consensus 352 ~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~ 431 (876)
.+++..+++++++.+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||+.+ .|.|++...
T Consensus 337 ~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~-------- 405 (485)
T PRK10815 337 LHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT-------- 405 (485)
T ss_pred eecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe--------
Confidence 9999999999999999999999999998876543 57799999999999999999999965 355554321
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC
Q 002821 432 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 511 (876)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~ 511 (876)
...+.|+|+|+|+|||++.++++|+||++.+.+
T Consensus 406 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~-- 438 (485)
T PRK10815 406 ---------------------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADTL-- 438 (485)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--
Confidence 124789999999999999999999999986542
Q ss_pred CCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 512 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 512 ~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
.+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 439 --~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 439 --RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred --CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 35999999999999999999999999999999999999864
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=100.00 E-value=1.1e-31 Score=313.17 Aligned_cols=214 Identities=21% Similarity=0.287 Sum_probs=166.7
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHH
Q 002821 280 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 359 (876)
Q Consensus 280 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll 359 (876)
..++++.++|||||||++|.|++++|.....+.........+......+..++..+.++. .........++|+.+++
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~dl~~~~ 352 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVI---PQSPQEIVVPVNLNQIL 352 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhh---ccCcccccccccHHHHH
Confidence 456788899999999999999999987653332223333333333333333333333332 23334456789999999
Q ss_pred HHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCe-----EEEEEEEeeccccchhhhh
Q 002821 360 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-----IFVTVYLVEEVVDSIEVET 434 (876)
Q Consensus 360 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-----I~v~v~~~~~~~~~~~~~~ 434 (876)
++++..+...+..+++.+.+..++.+| .+.+|+.+|+|||.||++||+||++.|. |.+.+..
T Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------------ 419 (494)
T TIGR02938 353 RDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL------------ 419 (494)
T ss_pred HHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------------
Confidence 999999999999999999988877666 5789999999999999999999996652 3333211
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCC
Q 002821 435 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 514 (876)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 514 (876)
+...+.|+|+|||+|||++.+.+||+||++.+.. ..
T Consensus 420 -----------------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~~ 455 (494)
T TIGR02938 420 -----------------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---SR 455 (494)
T ss_pred -----------------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---CC
Confidence 1125789999999999999999999999987643 26
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 515 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 515 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
+||||||+|||.||++|||+|+++|.+|+||+|+|++|+
T Consensus 456 ~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 456 KHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred CCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999985
No 19
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=5e-31 Score=306.84 Aligned_cols=236 Identities=25% Similarity=0.427 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002821 264 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 343 (876)
Q Consensus 264 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~ 343 (876)
+.++++..+.+.....+.+|++.+|||+||||+.+.+.++.+.+... ....+.+..+....++|..++++++++++.+.
T Consensus 224 ~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~ 302 (466)
T PRK10549 224 QDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDE 302 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34555666677777788899999999999999999999999876432 22345678888889999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEE
Q 002821 344 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 422 (876)
Q Consensus 344 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~ 422 (876)
+...+...++++.+++++++..+......+++++.+++++.. .+.+|+.++.|++.||++||+||++. |.|.|.+..
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~ 380 (466)
T PRK10549 303 GALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ 380 (466)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 999999999999999999999999999999999998876543 47799999999999999999999965 567766542
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccc
Q 002821 423 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 502 (876)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 502 (876)
.+ ..+.|.|+|+|+|||++.++++|+|
T Consensus 381 ~~-----------------------------------------------------~~~~i~V~D~G~Gi~~e~~~~lf~~ 407 (466)
T PRK10549 381 RD-----------------------------------------------------KTLRLTFADSAPGVSDEQLQKLFER 407 (466)
T ss_pred cC-----------------------------------------------------CEEEEEEEecCCCcCHHHHHHhccC
Confidence 11 2478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 503 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 503 F~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
||+.+.+..+..+|+||||+||+++++.|||++.++|.+++||+|+|.+|+..
T Consensus 408 ~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 408 FYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 99998776677789999999999999999999999999999999999999854
No 20
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=7e-31 Score=325.10 Aligned_cols=223 Identities=22% Similarity=0.353 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEe
Q 002821 275 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE--LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 352 (876)
Q Consensus 275 ~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~--l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~ 352 (876)
+.++.|.+|++.+||||||||++|.|+++++.... ......++++.+.....++..+++++++++++++|.+.++..+
T Consensus 659 e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~ 738 (895)
T PRK10490 659 EREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEW 738 (895)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 34566789999999999999999999999886432 2223446788899999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC-eEEEEEEEeeccccchh
Q 002821 353 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 431 (876)
Q Consensus 353 ~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~ 431 (876)
+++.+++++++..+......+++.+. +++..| .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 739 ~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~-------- 807 (895)
T PRK10490 739 LTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE-------- 807 (895)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe--------
Confidence 99999999999999887777766654 455544 588999999999999999999999765 566655321
Q ss_pred hhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC
Q 002821 432 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 511 (876)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~ 511 (876)
...+.|+|.|+|+|||++.+++||+||++.+..
T Consensus 808 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~-- 840 (895)
T PRK10490 808 ---------------------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE-- 840 (895)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--
Confidence 124789999999999999999999999986542
Q ss_pred CCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 512 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 512 ~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
+..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 841 ~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 841 SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 34569999999999999999999999999999999999999853
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.98 E-value=4.3e-30 Score=298.61 Aligned_cols=213 Identities=26% Similarity=0.438 Sum_probs=183.4
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
+..+|.+++||||||||++|.|+++++.+.. ...+.+++++.+....+++..++++++++++.. .....++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567999999999999999999999987643 345567888999999999999999999999843 34556899999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC-CCeEEEEEEEeeccccchhhhhhh
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 436 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 436 (876)
++++++..+...+.++++.+.+..++..+ .+.+|+.+|.|++.||++||+||+. .|.|.|.+...+
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~------------ 378 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESG------------ 378 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeC------------
Confidence 99999999999999999999998876554 5778999999999999999999975 456766654211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002821 437 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 516 (876)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 516 (876)
..+.|+|+|+|+|||++.++++|++|++. +.+|
T Consensus 379 -----------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------k~~g 411 (457)
T PRK10364 379 -----------------------------------------AGVKISVTDSGKGIAADQLEAIFTPYFTT------KAEG 411 (457)
T ss_pred -----------------------------------------CeEEEEEEECCCCCCHHHHHHHhCccccC------CCCC
Confidence 13789999999999999999999999853 2468
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 517 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 517 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
+||||+|||++++.|||+|+++|.++.||+|++++|...
T Consensus 412 ~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 412 TGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 999999999999999999999999999999999999853
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.98 E-value=4.8e-30 Score=288.29 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002821 265 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 344 (876)
Q Consensus 265 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g 344 (876)
.+.++.++.+...+.+.+|++++||||||||++|.+.++++.+... . ..+.+....+++..++++++++++.+..
T Consensus 122 ~~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~ 196 (356)
T PRK10755 122 ALNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQS 196 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444555555556666789999999999999999999998765422 1 2334455677899999999999998776
Q ss_pred CceeEeEeecH-HHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEE
Q 002821 345 KLELEAVSFNL-RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 422 (876)
Q Consensus 345 ~~~l~~~~~~L-~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~ 422 (876)
........+++ .+++..+...+...+..+++.+.+...+ .+..+.+|+.++++|+.||++||+||++. |.|.|.+..
T Consensus 197 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~ 275 (356)
T PRK10755 197 FSSGHYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ 275 (356)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 65566667888 8999998888988888898888764222 34468899999999999999999999965 456666532
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccc
Q 002821 423 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 502 (876)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 502 (876)
. ...+.|+|+|+|+||+++.++++|+|
T Consensus 276 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~ 302 (356)
T PRK10755 276 E-----------------------------------------------------DGGAVLAVEDEGPGIDESKCGELSKA 302 (356)
T ss_pred c-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHhCCC
Confidence 1 12478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC-CcEEEEEEEEeC
Q 002821 503 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 554 (876)
Q Consensus 503 F~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp~~ 554 (876)
|++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 303 f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 303 FVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred eEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 998643 357999999999999999999999999998 999999999864
No 23
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=1.2e-29 Score=296.48 Aligned_cols=232 Identities=26% Similarity=0.425 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002821 265 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVES 343 (876)
Q Consensus 265 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~L~~lindlLd~skie~ 343 (876)
.++++.++.++....+.+|++++|||||||++.+.+.++.+..... ..+..+.+..+.....++..++++++++++.+.
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~ 326 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADN 326 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556666777778899999999999999999999988765433 334556677777888999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC-eEEEEEEE
Q 002821 344 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 422 (876)
Q Consensus 344 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~ 422 (876)
+.......++++.++++++...+...+.++++.+.+..+ +..+.+|+.+|+||+.||++||+||++.| .|.|++..
T Consensus 327 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~ 403 (482)
T PRK09835 327 NQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQE 403 (482)
T ss_pred CCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 988888889999999999999999988899988876532 34688999999999999999999999765 46666532
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccc
Q 002821 423 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 502 (876)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 502 (876)
.+ ..+.|+|+|+|+|||++.++++|+|
T Consensus 404 ~~-----------------------------------------------------~~~~i~v~d~G~gi~~~~~~~if~~ 430 (482)
T PRK09835 404 VD-----------------------------------------------------HQVQLVVENPGTPIAPEHLPRLFDR 430 (482)
T ss_pred eC-----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCC
Confidence 11 1368999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 503 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 503 F~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
||+.+.+..+..+|+||||+||+++++.|||+|+++|.+ .|++|++++|.
T Consensus 431 f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 431 FYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 999988776667899999999999999999999999974 69999999985
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=1e-29 Score=307.91 Aligned_cols=231 Identities=19% Similarity=0.312 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002821 266 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 345 (876)
Q Consensus 266 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~ 345 (876)
++++..++++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..+.++|..++++++++++++.+.
T Consensus 471 fn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~ 550 (703)
T TIGR03785 471 FAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAI 550 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 33444556666666778999999999999999999999988777777788899999999999999999999999999988
Q ss_pred ceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEEee
Q 002821 346 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVE 424 (876)
Q Consensus 346 ~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~ 424 (876)
...+..++++.+++++++..+......+++.+.+.. . +..+.+|+..|.||+.||++||+||++. |.|.|++...
T Consensus 551 ~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~--~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~- 626 (703)
T TIGR03785 551 QSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPE--T-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN- 626 (703)
T ss_pred ccccceeecHHHHHHHHHHHHHHHhhcCCEEEEecC--C-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc-
Confidence 888888999999999999999988888877776543 2 2368899999999999999999999965 4565554321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccccc
Q 002821 425 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 504 (876)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 504 (876)
...+.|+|+|+|+|||++.+++||+||+
T Consensus 627 ----------------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~ 654 (703)
T TIGR03785 627 ----------------------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMV 654 (703)
T ss_pred ----------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCe
Confidence 1247899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC-CcEEEEEEEE
Q 002821 505 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 552 (876)
Q Consensus 505 q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp 552 (876)
+.+.......+|+||||+|||++++.|||+|.++|.++ .|++|+|++|
T Consensus 655 t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 655 SVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred ecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 87655555556899999999999999999999999976 8999999986
No 25
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=1.3e-29 Score=293.73 Aligned_cols=231 Identities=29% Similarity=0.447 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002821 264 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVE 342 (876)
Q Consensus 264 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lindlLd~skie 342 (876)
+.+.++.+++++......+|.+++||||||||+.+.+.++.+.....+ .+..++++.+.....+|..++++++++++++
T Consensus 225 ~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 304 (457)
T TIGR01386 225 QSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARAD 304 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455556666666677899999999999999999999987654333 3446778888888899999999999999999
Q ss_pred cCCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEE
Q 002821 343 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVY 421 (876)
Q Consensus 343 ~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~ 421 (876)
.........++++.++++++++.+...+.++++.+.+.. . ..+.+|+..|.+++.||++||+||++. |.|.|++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~ 380 (457)
T TIGR01386 305 NGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIE 380 (457)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence 998888889999999999999999988899998876643 2 468899999999999999999999965 56766653
Q ss_pred EeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcc
Q 002821 422 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 501 (876)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~ 501 (876)
.. ...+.|+|+|+|+|||++.++++|+
T Consensus 381 ~~-----------------------------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~ 407 (457)
T TIGR01386 381 RR-----------------------------------------------------SDEVRVSVSNPGPGIPPEHLSRLFD 407 (457)
T ss_pred ec-----------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhcc
Confidence 21 1247899999999999999999999
Q ss_pred cccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002821 502 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 552 (876)
Q Consensus 502 pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 552 (876)
|||+.+.++++..+|+||||+||+++++.|||+|.+++ +++|++|++++|
T Consensus 408 ~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 408 RFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred ccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 99999887777778999999999999999999999999 999999999986
No 26
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-30 Score=288.21 Aligned_cols=236 Identities=25% Similarity=0.409 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 264 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQAK 340 (876)
Q Consensus 264 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~---~l~~~~~~~l~~i~~~~~~L~~lindlLd~sk 340 (876)
.++.++...+|+++....+|...+||++|.||+.|.+++++|... .++.+.++++..+.+....+.+||++++.+|+
T Consensus 508 eela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 508 EELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456667778888888899999999999999999999999999754 57888999999999999999999999999999
Q ss_pred HhcCCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEE
Q 002821 341 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 420 (876)
Q Consensus 341 ie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v 420 (876)
+..-...+. +.|+.+++++++........+.++++.+ .+ +| .+.+|+.++.|++.||+.|||||..++.-.|.|
T Consensus 588 l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I 661 (750)
T COG4251 588 LGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEI 661 (750)
T ss_pred hccccCCCC--CcchHHHHHHHHHhcccccccccceEEe--cc-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEE
Confidence 866555554 7899999999999999999999998876 34 66 588999999999999999999998665323333
Q ss_pred EEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhc
Q 002821 421 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 500 (876)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF 500 (876)
.... ....+.++|.|+|+||.++..++||
T Consensus 662 ~~~r---------------------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 662 SAER---------------------------------------------------QEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred eeec---------------------------------------------------cCCceEEEecCCCCCcCHHHHHHHH
Confidence 2110 1123679999999999999999999
Q ss_pred ccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCC
Q 002821 501 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 558 (876)
Q Consensus 501 ~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~ 558 (876)
..|.+..+ ...+.|||+||+|||+|++.|+|.|+|+|.+|+|+||.|++|....++
T Consensus 691 ~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e~ 746 (750)
T COG4251 691 VIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEEP 746 (750)
T ss_pred HHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcCc
Confidence 99988643 456889999999999999999999999999999999999999876543
No 27
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=291.70 Aligned_cols=232 Identities=23% Similarity=0.385 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002821 265 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 344 (876)
Q Consensus 265 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g 344 (876)
.+..+.+++++....+.+|++++||||||||+++.+.++++.....+. ..+..+....++|..++++++++++.+..
T Consensus 228 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~ 304 (461)
T PRK09470 228 SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQK 304 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555666666777788999999999999999999999886543322 24567788899999999999999998765
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEee
Q 002821 345 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 424 (876)
Q Consensus 345 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 424 (876)
. .+....+++.+++++++..+...+..+++.+.+...+. +..+.+|+..|.+++.||++||+||++ +.|.|+++..+
T Consensus 305 ~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~ 381 (461)
T PRK09470 305 N-HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDK 381 (461)
T ss_pred c-ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEEC
Confidence 3 56777899999999999998888888899888874332 457889999999999999999999996 56666654321
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccccc
Q 002821 425 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 504 (876)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 504 (876)
..+.|+|+|+|+||+++.++++|+|||
T Consensus 382 -----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~ 408 (461)
T PRK09470 382 -----------------------------------------------------DGLTITVDDDGPGVPEEEREQIFRPFY 408 (461)
T ss_pred -----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCc
Confidence 146899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 505 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 505 q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
+.+...++..+|+||||+||+++++.|||++.+.|.++.||+|++++|+..
T Consensus 409 ~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 409 RVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred cCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 988777777789999999999999999999999999999999999999853
No 28
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=3.4e-30 Score=264.42 Aligned_cols=222 Identities=23% Similarity=0.389 Sum_probs=183.1
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 278 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 278 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
++-+....+++|||||||.||.|.+++|...-.++..++|.+.|-..++||.+|++.+.-++ ..-..+..++|+++
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~----~~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLG----PQRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccccchHHH
Confidence 35567899999999999999999999998876677689999999999999999999886554 23345566899999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC---C--CeEEEEEEEeeccccchhh
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---K--GHIFVTVYLVEEVVDSIEV 432 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~~~~ 432 (876)
+++.|..+.+..+ ..++.|.-++++++|. +.+|+.+|.|++.||+.||...-. . |.|.++-+..-.. ++
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~----~i 279 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL----TI 279 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE----Ec
Confidence 9999998887654 4679999999999996 789999999999999999999864 3 7777664321110 00
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCC
Q 002821 433 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 512 (876)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 512 (876)
........+.++|.|||+|||++.++++|.||...
T Consensus 280 ---------------------------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------ 314 (363)
T COG3852 280 ---------------------------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------ 314 (363)
T ss_pred ---------------------------------------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc------
Confidence 01112234678999999999999999999999853
Q ss_pred CCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 513 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 513 ~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
+.+||||||+|+++||..|||.|.|+|.||. |+|++.+|..+
T Consensus 315 r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~~ 356 (363)
T COG3852 315 REGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIRK 356 (363)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEEeccCCc-eEEEEEeeccc
Confidence 4589999999999999999999999999984 99999999865
No 29
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=6.4e-29 Score=286.63 Aligned_cols=222 Identities=20% Similarity=0.304 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002821 264 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 343 (876)
Q Consensus 264 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~ 343 (876)
+.++++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....++|..++++++++++.+.
T Consensus 213 ~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~ 287 (435)
T PRK09467 213 RAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQ 287 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445566677777888899999999999999999999998877532 233456678888999999999999998764
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEe
Q 002821 344 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 423 (876)
Q Consensus 344 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~ 423 (876)
+ ....++++.+++++++..+. ..+..+.+.+++. +..+.+|+..|++|+.||++||+||+ .|.|.|++...
T Consensus 288 ~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~ 358 (435)
T PRK09467 288 E---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE 358 (435)
T ss_pred C---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec
Confidence 3 34567899999999987654 3445555555443 34788999999999999999999998 57777765421
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccc
Q 002821 424 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 503 (876)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 503 (876)
...+.|+|+|+|+||+++.++++|+||
T Consensus 359 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 359 -----------------------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 124789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 504 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 504 ~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
++.+.+. ..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 386 ~~~~~~~--~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 386 TRGDSAR--GSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred ccCCCCC--CCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 9987643 347999999999999999999999999999999999999974
No 30
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=9.6e-29 Score=286.45 Aligned_cols=226 Identities=20% Similarity=0.315 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002821 265 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVES 343 (876)
Q Consensus 265 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~-~~~~~l~~i~~~~~~L~~lindlLd~skie~ 343 (876)
.++.+..+.++......+|++.+|||||||++.+.+.++.+.....++ ...++++.+...++++..++++++.+++++.
T Consensus 222 ~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~ 301 (449)
T PRK10337 222 ALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDS 301 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344445555555556678999999999999999999998876544333 3457889999999999999999999999998
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC-eEEEEEEE
Q 002821 344 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 422 (876)
Q Consensus 344 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~ 422 (876)
+.......++++.+++++++..+...+..+++.+.+.+++. +..+.+|+..+.+++.||++||+||++.| .|.+.+..
T Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~ 380 (449)
T PRK10337 302 LDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA 380 (449)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe
Confidence 77666777899999999999999989999999999887643 34568999999999999999999999764 55554321
Q ss_pred eeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccc
Q 002821 423 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 502 (876)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~p 502 (876)
..|+|+|+|+|||++.++++|+|
T Consensus 381 ---------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~~ 403 (449)
T PRK10337 381 ---------------------------------------------------------RNFTVRDNGPGVTPEALARIGER 403 (449)
T ss_pred ---------------------------------------------------------eEEEEEECCCCCCHHHHHHhccc
Confidence 14899999999999999999999
Q ss_pred ccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEE
Q 002821 503 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 551 (876)
Q Consensus 503 F~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~l 551 (876)
|++.+. +..+|+||||+||++++++|||+|+++|.++.|++|++++
T Consensus 404 f~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 404 FYRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred ccCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 998643 2447999999999999999999999999999999999863
No 31
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.97 E-value=5.6e-29 Score=275.11 Aligned_cols=218 Identities=32% Similarity=0.427 Sum_probs=190.4
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 356 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~ 356 (876)
.+.+|++.++|||||||++|.++++++... ..++...++++.+..++++|..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 355799999999999999999999988654 344566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEEeeccccchhhhhh
Q 002821 357 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETE 435 (876)
Q Consensus 357 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~ 435 (876)
+++..++..+......+++.+.+.++. +..+.+|+..|.+|+.||++||+||++. +.|.|++...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 999999999999999999999888732 3468899999999999999999999864 5565554321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCC
Q 002821 436 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 515 (876)
...+.|.|.|+|+|||++.++++|+||++.+...+...+
T Consensus 259 -----------------------------------------~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~ 297 (333)
T TIGR02966 259 -----------------------------------------GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTG 297 (333)
T ss_pred -----------------------------------------CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCC
Confidence 113679999999999999999999999987766566678
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEE
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 551 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~l 551 (876)
|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 298 g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 298 GTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 999999999999999999999999999999999974
No 32
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=267.03 Aligned_cols=211 Identities=23% Similarity=0.419 Sum_probs=181.6
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHH---HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 281 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 281 s~fla~iSHElRTPL~~I~g~~~---lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
.++.+.+||||+.||++|.++++ +|.+....++-.+.++.|..-.++|-.+..+|=.|++--... ..++.+.+
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~~ 460 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLRE 460 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHHH
Confidence 47999999999999999999886 466677777788899999999999999999999998754433 46789999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC---CCeEEEEEEEeeccccchhhhh
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVET 434 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~ 434 (876)
.|++++.++....+..+..+....++. |.+|.+|+.||+|||.|||+||+..+. ++.|.|.+..
T Consensus 461 ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------------ 527 (603)
T COG4191 461 AIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------------ 527 (603)
T ss_pred HHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------------
Confidence 999999999999999999998876543 568999999999999999999999974 4556555432
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCC
Q 002821 435 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 514 (876)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 514 (876)
+...+.|+|.|||+||+++.+.++|+||++.++ ..
T Consensus 528 -----------------------------------------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~----~~ 562 (603)
T COG4191 528 -----------------------------------------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP----VG 562 (603)
T ss_pred -----------------------------------------cCCeEEEEEccCCCCCCHHHHHhhcCCccccCc----cc
Confidence 122478999999999999999999999997542 35
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 515 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 515 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
.|.||||+||+.|++-|||+|.+.+.++.|+.|++.|+.
T Consensus 563 ~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 563 KGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred CCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 799999999999999999999999999999999999874
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1.6e-27 Score=277.59 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=191.3
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 358 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~l 358 (876)
...+|++.++||+|||++.+.+.++++......+...++++.+...++++..++++++.+++++.+.......++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578999999999999999999999887555566788999999999999999999999999998887777889999999
Q ss_pred HHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC-CCeEEEEEEEeeccccchhhhhhhc
Q 002821 359 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 437 (876)
Q Consensus 359 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 437 (876)
+++++..+...+..+++.+.+.++ +..+.+|...|.+++.||+.||+||+. .|.|.|++...+
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~------------- 398 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDG------------- 398 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcC-------------
Confidence 999999999999999999988765 446889999999999999999999995 467777664211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002821 438 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 517 (876)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 517 (876)
..+.|+|+|+|+|||++.++++|++|++.+.. ....+|+
T Consensus 399 ----------------------------------------~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~ 437 (475)
T PRK11100 399 ----------------------------------------EQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKST 437 (475)
T ss_pred ----------------------------------------CEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCc
Confidence 24789999999999999999999999976432 2345799
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 518 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 518 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
||||+||+.++++|||+|.++|.++.||+|.+.+|.
T Consensus 438 GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~ 473 (475)
T PRK11100 438 GLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred chhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeC
Confidence 999999999999999999999999999999999986
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=6.8e-28 Score=269.76 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=173.5
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 358 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~l 358 (876)
+..+|++.+||||||||++|.|+++++.+...++..+++++.+..++++|..++++++++.+... ....++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45789999999999999999999999887666667789999999999999999999997755322 345799999
Q ss_pred HHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcc--CCCeEEEEEEEeeccccchhhhhhh
Q 002821 359 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT--EKGHIFVTVYLVEEVVDSIEVETEL 436 (876)
Q Consensus 359 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~~~~~~~~ 436 (876)
++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.|.|.|.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888777554 467888877766655 478999999999999999999997 3455655542110000
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002821 437 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 516 (876)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 516 (876)
.........+.|+|.|+|+|||++.++++|+||++. +.+|
T Consensus 272 ----------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g 311 (348)
T PRK11073 272 ----------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGG 311 (348)
T ss_pred ----------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCC
Confidence 000011123679999999999999999999999863 2469
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 517 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 517 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
+||||+|||++++.|||+|+++|.+|+ |+|++++|+
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 999999999999999999999999885 999999986
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=3.5e-26 Score=250.65 Aligned_cols=217 Identities=39% Similarity=0.666 Sum_probs=184.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceeEeEeecHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK-LELEAVSFNLRA 357 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~-~~l~~~~~~L~~ 357 (876)
.+..|++.++||+|||++.+.+.++++.....+ .+.+++..+...++++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999998866544222 267888888889999999999999999998873 344466778999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhc
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 437 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 437 (876)
++++++..+...+..+++.+....+ .+..+.+|+.+++||+.||++||+||++.|.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999888888888886554 2346889999999999999999999998777777764211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002821 438 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 517 (876)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 517 (876)
..+.++|.|+|+||+++.++++|+||++.+...+ |+
T Consensus 258 ----------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~ 293 (336)
T COG0642 258 ----------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GT 293 (336)
T ss_pred ----------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CC
Confidence 0478999999999999999999999998765432 99
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 518 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 518 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
||||+||+++++.|||+|.++|.++.||+|++++|...
T Consensus 294 GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 294 GLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999854
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=2.6e-26 Score=274.75 Aligned_cols=214 Identities=26% Similarity=0.498 Sum_probs=184.9
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 358 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~l 358 (876)
+..+|++.++|||||||+.|.|+++++.....+....++++.+....++|..++++++++++.+... ..++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 4568999999999999999999999987765566778999999999999999999999999875433 467899999
Q ss_pred HHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC-CCeEEEEEEEeeccccchhhhhhhc
Q 002821 359 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 437 (876)
Q Consensus 359 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~~ 437 (876)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...++
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~------------ 531 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSD------------ 531 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCC------------
Confidence 9999999998878899999988876655 4778999999999999999999975 4666666532110
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002821 438 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 517 (876)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 517 (876)
..+.|+|+|+|+|||++.++++|+||++.+ .+|+
T Consensus 532 ----------------------------------------~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~ 565 (607)
T PRK11360 532 ----------------------------------------GQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGT 565 (607)
T ss_pred ----------------------------------------CEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCC
Confidence 127899999999999999999999999643 3589
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 518 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 518 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
||||++|++++++|||+|+++|.+|+||+|+|++|+..
T Consensus 566 glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 566 GLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred chhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999854
No 37
>PRK13560 hypothetical protein; Provisional
Probab=99.94 E-value=1.2e-25 Score=279.24 Aligned_cols=213 Identities=17% Similarity=0.171 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002821 264 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 343 (876)
Q Consensus 264 ~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~ 343 (876)
.+..++.++++++.++|++|+++|||||||||++|.|+++++.....++....++..+......+..+++.++..
T Consensus 589 TerK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----- 663 (807)
T PRK13560 589 SERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS----- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 344555667777788899999999999999999999999998777666777777766665555555555544321
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC----CeEEEE
Q 002821 344 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK----GHIFVT 419 (876)
Q Consensus 344 g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~----G~I~v~ 419 (876)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+.. |.|.|.
T Consensus 664 ----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~ 739 (807)
T PRK13560 664 ----EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVE 739 (807)
T ss_pred ----ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEE
Confidence 233568999999999998887776666666666655444444456778999999999999999843 456555
Q ss_pred EEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhh
Q 002821 420 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 499 (876)
Q Consensus 420 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~i 499 (876)
+... +...+.|+|+|||+|||++..
T Consensus 740 ~~~~----------------------------------------------------~~~~v~i~V~D~G~GI~~~~~--- 764 (807)
T PRK13560 740 IREQ----------------------------------------------------GDGMVNLCVADDGIGLPAGFD--- 764 (807)
T ss_pred EEEc----------------------------------------------------CCCEEEEEEEeCCCcCCcccc---
Confidence 4311 012478999999999998731
Q ss_pred cccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 500 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 500 F~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
...|+||||+|||+||++|||+|+|+|. +||+|+|+||+..
T Consensus 765 -------------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 765 -------------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred -------------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 1247899999999999999999999994 7999999999853
No 38
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.94 E-value=7.7e-25 Score=266.28 Aligned_cols=203 Identities=21% Similarity=0.314 Sum_probs=163.0
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
+..++.+.++||||||++.+.++++...+...+ +.+.++++.+.++.++|..+++++.+. ....+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHH
Confidence 346788999999999999999888876554433 345678888999999998888776432 2355667899999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC-CCeEEEEEEEeeccccchhhhhhh
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 436 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~~ 436 (876)
+++++...+... ...+++ .++++ ..+.+|+.++.||+.||++||+||++ +|.|.|++...+
T Consensus 548 ll~~~~~~~~~~--~~~~~l--~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~------------ 609 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEV--SIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC------------ 609 (679)
T ss_pred HHHHHHHHhhhh--cCCceE--EeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC------------
Confidence 999998876542 233444 34443 46889999999999999999999996 467777764211
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhh-HhhhcccccccCCCCCCCCC
Q 002821 437 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-QSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~iF~pF~q~~~s~~~~~~ 515 (876)
..+.|+|+|+|+|||++. ++++|+||++.+ .+
T Consensus 610 -----------------------------------------~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~ 642 (679)
T TIGR02916 610 -----------------------------------------GAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GA 642 (679)
T ss_pred -----------------------------------------CEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CC
Confidence 247899999999999999 999999998643 27
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 552 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 552 (876)
|+||||+|||++++.|||+|+++|.+|+||+|++++|
T Consensus 643 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 643 GMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9999999999999999999999999999999999986
No 39
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.93 E-value=1.3e-25 Score=230.08 Aligned_cols=184 Identities=30% Similarity=0.433 Sum_probs=137.6
Q ss_pred cccHHHHHHHHHH--hhhhccCcccceehhccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCCccceeEee--c
Q 002821 2 ARTRLLLIRYTER--TAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFA--Q 77 (876)
Q Consensus 2 ~~~~~~f~~~~~~--~~~~~p~~~~~~~~~~v~~~~r~~fe~~~~~~i~~~~~~~~~~~~~~~~~~~~~~y~pv~~~--~ 77 (876)
.+|+++|..|++. ++..+|++.+++|+|+|.+++|++||+++........ ...|.+.+++|+||.|. .
T Consensus 4 ~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f--------~i~~~~~~~~~~pv~yi~P~ 75 (193)
T PF03924_consen 4 EVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPDF--------RIRPDGPRDEYFPVTYIEPL 75 (193)
T ss_dssp ---HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT------S----------BTTS--SEE-BEEEE-GG
T ss_pred ccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccce--------EeeeCCCCCCceEEEEeecc
Confidence 4799999999999 9999999999999999999999999998753322211 11235589999999774 4
Q ss_pred CCcceEEEeccCCChhchHHHHHHHhcCCceeeccccccccC--cceEEEEEeeecCCCCCCCChHHHHHhhcceeeeee
Q 002821 78 DTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN--RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIF 155 (876)
Q Consensus 78 ~~~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~--~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~ 155 (876)
..+..++|+|++|+|.||++|.+|++||+.++|+|++|++.+ +.|++++.|||..+.+...++++|...++||+.++|
T Consensus 76 ~~n~~~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~v~ 155 (193)
T PF03924_consen 76 EGNEAALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSAVF 155 (193)
T ss_dssp G--GGGBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEEEE
T ss_pred hhHHhccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEEEE
Confidence 567889999999999999999999999999999999999765 699999999997666677789999999999999999
Q ss_pred ehHHHHHHHHHHhhccCcEEEEeeccCCCCCceeeccc
Q 002821 156 DIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 193 (876)
Q Consensus 156 ~v~~l~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~y~~ 193 (876)
++++|++.++........+.+.+||.+....+..+|++
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 156 RVDDLFESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp EHHHHHHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred EHHHHHHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 99999999987765346899999998777777777753
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.91 E-value=3.7e-23 Score=245.33 Aligned_cols=195 Identities=22% Similarity=0.313 Sum_probs=137.4
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHH
Q 002821 280 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 359 (876)
Q Consensus 280 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll 359 (876)
..++++.+|||+||||++|.|++++... .+..+++..+ +......++++++..+ . .++
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~-----~~~ 396 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK----------S-----PVI 396 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc----------C-----HHH
Confidence 3457788999999999999999987432 1223333222 1222222333322111 0 112
Q ss_pred HHHHHHHHhHhhhcCCEEEEEeCCCCCceE-eecHHHHHHHHHHHHHHHhhccC---CCeEEEEEEEeeccccchhhhhh
Q 002821 360 DDVLSLFSGKSQDKGVELAVYISDRVPETL-IGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVETE 435 (876)
Q Consensus 360 ~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v-~~D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~~~~~~~ 435 (876)
...+......+..+++.+.+..++.+|... ..+...|.||+.||++||+||+. .|.|.|++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------ 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------ 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc------------
Confidence 222222334567789998887766555422 23446899999999999999963 45666655321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCC
Q 002821 436 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 515 (876)
...+.|+|+|+|+|||++.++++|+||++. +.+
T Consensus 465 -----------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~ 497 (542)
T PRK11086 465 -----------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGS 497 (542)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCC
Confidence 124789999999999999999999999853 246
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 498 g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 498 NRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999854
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.90 E-value=5.2e-22 Score=231.80 Aligned_cols=195 Identities=11% Similarity=0.194 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecH
Q 002821 277 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 355 (876)
Q Consensus 277 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L 355 (876)
++.+.++.+.++||+||||++|.+.++++.+...+ ++.++..+.+.+.+.++.+.++++++..+- ....++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 34567888999999999999999999988664333 345577888999999999999999865441 12346799
Q ss_pred HHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhh
Q 002821 356 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 435 (876)
Q Consensus 356 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 435 (876)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...+
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~----------- 439 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQD----------- 439 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcC-----------
Confidence 9999999988875544444444433322 224456788899999999999999999888777664211
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCC
Q 002821 436 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 515 (876)
..+.++|+|+|+|||++. .
T Consensus 440 ------------------------------------------~~i~l~V~DnG~Gi~~~~-------------------~ 458 (495)
T PRK11644 440 ------------------------------------------ERLMLVIEDDGSGLPPGS-------------------G 458 (495)
T ss_pred ------------------------------------------CEEEEEEEECCCCCCcCC-------------------C
Confidence 247899999999998641 3
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
|+|+||+|||++++.|||+|+++| ++||+|++++|.
T Consensus 459 ~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 459 QQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 679999999999999999999999 889999999984
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.90 E-value=4.2e-22 Score=236.82 Aligned_cols=198 Identities=21% Similarity=0.312 Sum_probs=144.7
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHH
Q 002821 282 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 361 (876)
Q Consensus 282 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll~~ 361 (876)
+.+..++||+++||++|.|++++- ...+.++.+...+..+..+++++...-+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 456779999999999999987752 1234566777777778887777765422 1122222
Q ss_pred HHHHHHhHhhhcCCEEEEEeCCCCC-ceEeecHHHHHHHHHHHHHHHhhcc---CCCeEEEEEEEeeccccchhhhhhhc
Q 002821 362 VLSLFSGKSQDKGVELAVYISDRVP-ETLIGDPGRFRQIITNLMGNSIKFT---EKGHIFVTVYLVEEVVDSIEVETELS 437 (876)
Q Consensus 362 v~~~~~~~a~~k~i~l~~~~~~~~p-~~v~~D~~rl~qIl~NLl~NAiKfT---~~G~I~v~v~~~~~~~~~~~~~~~~~ 437 (876)
+.. ....+.++++.+.+..+..+. .....|+..|.||+.||++||+||. +.|...|.+....
T Consensus 399 l~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------- 464 (545)
T PRK15053 399 LFG-KVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------- 464 (545)
T ss_pred HHH-HHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------
Confidence 222 234567788888775443321 1235699999999999999999994 3343333333211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002821 438 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 517 (876)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 517 (876)
+...+.|+|+|+|+|||++.+++||+|||+.+ ++..+|+
T Consensus 465 --------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~ 503 (545)
T PRK15053 465 --------------------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEH 503 (545)
T ss_pred --------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCc
Confidence 11247899999999999999999999999743 3345789
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 518 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 518 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
||||+|||++|+.|||+|+++|.+|.||+|++++|...
T Consensus 504 GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 504 GIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred eeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 99999999999999999999999999999999999753
No 43
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.89 E-value=2.3e-22 Score=223.28 Aligned_cols=220 Identities=23% Similarity=0.355 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhC---CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 265 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD---TELDV---TQQDYVRTAQASGKALVSLINEVLDQ 338 (876)
Q Consensus 265 ~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~---~~l~~---~~~~~l~~i~~~~~~L~~lindlLd~ 338 (876)
.+..+++.+.-.+.|| -++|||||||+-|...++-|.. ...++ .-.++.++|.+....+.+||++.-.|
T Consensus 476 dLV~AQRs~AW~dVAr-----RIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~af 550 (712)
T COG5000 476 DLVIAQRSAAWGDVAR-----RIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAF 550 (712)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544 5999999999999999998753 22332 23577899999999999999999999
Q ss_pred HHHhcCCceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC----
Q 002821 339 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---- 414 (876)
Q Consensus 339 skie~g~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G---- 414 (876)
+|+-.- +.+..||++++.+++.++.. ....+.+..++... |....+|+..|.|++.||+.||..+-+.-
T Consensus 551 ARmP~p----~~e~~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e 623 (712)
T COG5000 551 ARMPAP----KLEKSDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEE 623 (712)
T ss_pred hcCCCC----CCCcchHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhccccc
Confidence 986543 44578999999999988764 34578888888766 77888899999999999999999985321
Q ss_pred -e-EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCC
Q 002821 415 -H-IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 492 (876)
Q Consensus 415 -~-I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~ 492 (876)
. -.++++. ......+++.|.|||.|.|
T Consensus 624 ~~~~~i~~~~---------------------------------------------------~~~~g~i~v~V~DNGkG~p 652 (712)
T COG5000 624 RRTALIRVSL---------------------------------------------------DDADGRIVVDVIDNGKGFP 652 (712)
T ss_pred CCcceEEEEE---------------------------------------------------ecCCCeEEEEEecCCCCCC
Confidence 0 0112211 1112358899999999999
Q ss_pred hhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC-CCcEEEEEEEEe
Q 002821 493 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP-NIGSTFTFTAVF 553 (876)
Q Consensus 493 ~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~-g~GstF~~~lp~ 553 (876)
.|.+.|+||||++. +.+||||||+|||+|+|-|||.|.+...| -.|....+.+|.
T Consensus 653 ~e~r~r~~EPYvTt------r~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 653 RENRHRALEPYVTT------REKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred hHHhhhhccCceec------ccccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 99999999999864 34699999999999999999999999884 359999998886
No 44
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.86 E-value=8.4e-20 Score=195.64 Aligned_cols=212 Identities=20% Similarity=0.334 Sum_probs=172.3
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 281 SQFLATVSHEIRTPMNGVLGMLDM---LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 281 s~fla~iSHElRTPL~~I~g~~~l---L~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
.+-+.++||||..|||++..++=. ..+...+.....++..|..-.+|+-.+|+.+-.|+|-.+++-.+ .|++|++
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 356789999999999999887632 23344455668999999999999999999999999988777555 4689999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhc
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 437 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 437 (876)
+++.+..++..+.+.+.+.+..-. +. .+|.||..+++||+.||+-||+..+..---.|.+...
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~-------------- 592 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL-------------- 592 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee--------------
Confidence 999999999999988888876532 22 3799999999999999999999987543222332211
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002821 438 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 517 (876)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 517 (876)
..+...+++.|.|+|+|-|-+..+++|.||... +.-|.
T Consensus 593 ------------------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtts------K~vgL 630 (673)
T COG4192 593 ------------------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTS------KEVGL 630 (673)
T ss_pred ------------------------------------cCcccceEEEEecCCCCCchhHHHHhcCCcccc------ccccc
Confidence 111234789999999999999999999999642 44699
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 518 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 518 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
|||||||..|++.|.|.+.+.|...+|.++.+.+..
T Consensus 631 GlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 631 GLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred ccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 999999999999999999999999999998877644
No 45
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=2.5e-20 Score=194.73 Aligned_cols=118 Identities=25% Similarity=0.394 Sum_probs=110.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+...|...||.|.++.+|.+|++.+. .. ||+|++|++||+|||+++|++||+..
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~-~dlviLD~~lP~~dG~~~~~~iR~~~---------- 69 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-EQ-PDLVLLDLMLPDLDGLELCRRLRAKK---------- 69 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cC-CCEEEEECCCCCCCHHHHHHHHHhhc----------
Confidence 7999999999999999999999999999999999999985 45 99999999999999999999999631
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
...+|||++||....+++..++++|+|||++|||++.+|...|+..+...
T Consensus 70 -----------~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 70 -----------GSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred -----------CCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 34689999999999999999999999999999999999999999887654
No 46
>PRK13559 hypothetical protein; Provisional
Probab=99.83 E-value=1.3e-19 Score=204.13 Aligned_cols=187 Identities=13% Similarity=0.157 Sum_probs=141.9
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 278 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 278 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
+.+.+|++.++||+||||+.|.|+++++... ....++++.+...+.+|..+++++|+.++ ..++++.+
T Consensus 168 ~~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~ 235 (361)
T PRK13559 168 AHERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEE 235 (361)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHH
Confidence 3456799999999999999999999988622 23456788888899999999999987643 35689999
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeec-HHHHHHHHHHHHHHHhhc---c-CCCeEEEEEEEeeccccchhh
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKF---T-EKGHIFVTVYLVEEVVDSIEV 432 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D-~~rl~qIl~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~~~~ 432 (876)
++++++..+... +..+.+..+ .+ .+..+ ...|.|||.||++||+|| + +.|.|.|.+....
T Consensus 236 ~~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~-------- 300 (361)
T PRK13559 236 LIRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP-------- 300 (361)
T ss_pred HHHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC--------
Confidence 999998877533 444544432 11 12222 356999999999999999 4 3577777652110
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCC
Q 002821 433 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 512 (876)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 512 (876)
+...+.+.|.|+|.|++++
T Consensus 301 -------------------------------------------~~~~~~i~v~d~G~~~~~~------------------ 319 (361)
T PRK13559 301 -------------------------------------------EGAGFRIDWQEQGGPTPPK------------------ 319 (361)
T ss_pred -------------------------------------------CCCeEEEEEECCCCCCCCC------------------
Confidence 1124789999999997653
Q ss_pred CCCcccccHHHHHHHHHH-cCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 513 THGGTGIGLSISKYLVGR-MKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 513 ~~~GtGLGLsI~k~lv~~-mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
..|+|+||.||+++++. |||+|++++. +.|++|+|++|..
T Consensus 320 -~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 -LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred -CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999987 9999999998 5799999999963
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.83 E-value=4.3e-20 Score=171.50 Aligned_cols=109 Identities=36% Similarity=0.595 Sum_probs=97.6
Q ss_pred ecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002821 391 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 469 (876)
Q Consensus 391 ~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (876)
||+.+|++|+.||+.||+||+++ |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999966 88888875422
Q ss_pred CCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEE
Q 002821 470 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 549 (876)
Q Consensus 470 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~ 549 (876)
..+.|+|.|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|+|++.|.++.||+|+|
T Consensus 36 --------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~ 106 (111)
T PF02518_consen 36 --------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTF 106 (111)
T ss_dssp --------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEE
T ss_pred --------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 2578999999999999999999999999876 2345578999999999999999999999999999999999
Q ss_pred EEEe
Q 002821 550 TAVF 553 (876)
Q Consensus 550 ~lp~ 553 (876)
++|+
T Consensus 107 ~~p~ 110 (111)
T PF02518_consen 107 TLPL 110 (111)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 9996
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.79 E-value=1.4e-17 Score=198.95 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=140.9
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHH----HhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecH
Q 002821 282 QFLATVSHEIRTPMNGVLGMLDM----LMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 355 (876)
Q Consensus 282 ~fla~iSHElRTPL~~I~g~~~l----L~~~--~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L 355 (876)
+..+.++||+++|++.++.++.+ +... ...+...+.+..+.....++...+.+++...+ +...++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 34566999999999888777653 3321 12234456666777777777777777775443 33456899
Q ss_pred HHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhh
Q 002821 356 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 435 (876)
Q Consensus 356 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~ 435 (876)
.+.+.+++..+... .++.+.+......+....+++.++.|++.||+.||+||++.|.|.+.+....
T Consensus 435 ~~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~----------- 500 (565)
T PRK10935 435 GSALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNP----------- 500 (565)
T ss_pred HHHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-----------
Confidence 99999999988754 3344444332111112234556799999999999999999888877764310
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCC
Q 002821 436 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 515 (876)
...+.|+|.|+|+|||++. ..
T Consensus 501 -----------------------------------------~~~~~i~V~D~G~Gi~~~~------------------~~ 521 (565)
T PRK10935 501 -----------------------------------------DGEHTVSIRDDGIGIGELK------------------EP 521 (565)
T ss_pred -----------------------------------------CCEEEEEEEECCcCcCCCC------------------CC
Confidence 1247899999999999631 24
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
|+||||+||+++++.|||+|+++|.+|+||+|+|++|...
T Consensus 522 ~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 522 EGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCCC
Confidence 7899999999999999999999999999999999999753
No 49
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.76 E-value=6.6e-17 Score=180.38 Aligned_cols=194 Identities=26% Similarity=0.383 Sum_probs=140.3
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHH
Q 002821 282 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 361 (876)
Q Consensus 282 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll~~ 361 (876)
+-|...+||.+|=|+.|.|++++=. -++..+|+..+...- ...++.+.. ++. ...+..
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~----yd~a~~~I~~~~~~q---q~~~~~l~~--~i~-------------~~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE----YDDALDYIQQESEEQ---QELIDSLSE--KIK-------------DPVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHhhh---hhhHHHHHH--hcc-------------cHHHHH
Confidence 3466789999999999999998632 123344554443322 222222211 111 123334
Q ss_pred HHHHHHhHhhhcCCEEEEEeCCCCCce-EeecHHHHHHHHHHHHHHHhhccC--C--CeEEEEEEEeeccccchhhhhhh
Q 002821 362 VLSLFSGKSQDKGVELAVYISDRVPET-LIGDPGRFRQIITNLMGNSIKFTE--K--GHIFVTVYLVEEVVDSIEVETEL 436 (876)
Q Consensus 362 v~~~~~~~a~~k~i~l~~~~~~~~p~~-v~~D~~rl~qIl~NLl~NAiKfT~--~--G~I~v~v~~~~~~~~~~~~~~~~ 436 (876)
.+---..+|+++|+.+.++.+..+|.. -.-++.-+--|+-||++||+..+. . ..|.+.+.-
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~-------------- 458 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD-------------- 458 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe--------------
Confidence 444445678999999999877766542 234889999999999999999874 2 344444421
Q ss_pred ccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCc
Q 002821 437 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 516 (876)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G 516 (876)
+...+.|+|.|||+|||++.++++|+.=+.. +..+|
T Consensus 459 ---------------------------------------~~~~lvieV~D~G~GI~~~~~~~iFe~G~St-----k~~~~ 494 (537)
T COG3290 459 ---------------------------------------RGDELVIEVADTGPGIPPEVRDKIFEKGVST-----KNTGG 494 (537)
T ss_pred ---------------------------------------cCCEEEEEEeCCCCCCChHHHHHHHhcCccc-----cCCCC
Confidence 2236899999999999999999999986643 23578
Q ss_pred ccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 517 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 517 tGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
.|.||++||++|+.+||.|+++|+.+.||+|++.+|...
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999999999999999854
No 50
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.74 E-value=1.5e-16 Score=184.37 Aligned_cols=257 Identities=18% Similarity=0.176 Sum_probs=184.5
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++++++.........+...|..+..+.+..+++..+.. ..++++++|......+ ....+..++........+
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMD---GFEVCRRLKSDPATTHIP 78 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCCC
Confidence 68999999999988888999999999999999999988754 3467888886654322 233445555432222334
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCC------CCCCCC-----CCCcchhhccCCCCe
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK------GNIRNW-----ELPSMSLRHLLLGRK 731 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~------~~~~~~-----~~~~~~~~~~~~~~~ 731 (876)
++++............. ..+...++.||+....+...+...+..... ...... ..+...........+
T Consensus 79 ii~~s~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T PRK09581 79 VVMVTALDDPEDRVRGL-EAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAYANKDEDGR 157 (457)
T ss_pred EEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccccccccCce
Confidence 44444332221111111 125567999999998888777655431100 000000 000000111234578
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 811 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 811 (876)
||||||++..+..+..+|.. ++.+..+.+|.+|+..+. .+.||+|++|+.||.|||++++++||+..
T Consensus 158 vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~----------- 224 (457)
T PRK09581 158 ILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKE----------- 224 (457)
T ss_pred EEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhcc-----------
Confidence 99999999999999999965 577788999999999874 57899999999999999999999999742
Q ss_pred cchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 812 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 812 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
..+++|||++|++.+.+...+|+++|++||+.||++.++|...+...
T Consensus 225 ---------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~ 271 (457)
T PRK09581 225 ---------RTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQ 271 (457)
T ss_pred ---------ccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHH
Confidence 13579999999999999999999999999999999999999888653
No 51
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.74 E-value=7.1e-16 Score=184.37 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHHHhHh
Q 002821 293 TPMNGVLGMLDMLM--DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 370 (876)
Q Consensus 293 TPL~~I~g~~~lL~--~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~~~~a 370 (876)
.+|+.+...+..+. ....++..++.+..+....+.+...+.+++...+.. ..+.++.+.+++++..+....
T Consensus 375 ~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~~~ 447 (569)
T PRK10600 375 QSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSARF 447 (569)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHHHh
Confidence 34455554444332 233456677889999999999999999999876542 345788899999988887543
Q ss_pred hhcCCEEEEEeCCCCCceEe-ecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCcc
Q 002821 371 QDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 449 (876)
Q Consensus 371 ~~k~i~l~~~~~~~~p~~v~-~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (876)
++.+.+.++... ..+. .++..+.||+.|+++||+||++.+.|.|++...
T Consensus 448 ---~~~i~~~~~~~~-~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~-------------------------- 497 (569)
T PRK10600 448 ---GFPVKLDYQLPP-RLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN-------------------------- 497 (569)
T ss_pred ---CCeEEEEecCCc-ccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc--------------------------
Confidence 444444433211 1122 244569999999999999999888877766321
Q ss_pred ccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHH
Q 002821 450 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 529 (876)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~ 529 (876)
...+.|+|.|+|+|||++. ..|+|+||+||+.+++
T Consensus 498 ---------------------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~~ 532 (569)
T PRK10600 498 ---------------------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRAQ 532 (569)
T ss_pred ---------------------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHHH
Confidence 1247899999999999752 1368999999999999
Q ss_pred HcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 530 RMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 530 ~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
.|||+|.+.|.+|+||+|++++|..
T Consensus 533 ~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 533 SLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HcCCEEEEEECCCCCEEEEEEEecC
Confidence 9999999999999999999999874
No 52
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-17 Score=185.12 Aligned_cols=117 Identities=33% Similarity=0.480 Sum_probs=110.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..|.++..+|...||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~---------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR---------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 4799999999999999999999999999999999999999654 79999999999999999999999984
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||+||++.+.++..+|++.||.|||.|||+.++|...|.+.+.
T Consensus 74 ------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 74 ------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999998775
No 53
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.72 E-value=5.1e-17 Score=150.37 Aligned_cols=111 Identities=36% Similarity=0.564 Sum_probs=104.6
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
||||||++..+..+...|+..|+ .|..+.++.+|++.+. .+.||+|++|+.||+++|.+++++||+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i~~~----------- 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQIRQI----------- 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHHHHH-----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-ccCceEEEEEeeeccccccccccccccc-----------
Confidence 79999999999999999999999 9999999999999995 5779999999999999999999999974
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
.+++|||++|+..+.....+++++|+++|+.||++.++|..+|+
T Consensus 69 -----------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 69 -----------NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp -----------TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred -----------cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 24799999999999999999999999999999999999999874
No 54
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.72 E-value=2.2e-17 Score=175.51 Aligned_cols=120 Identities=32% Similarity=0.491 Sum_probs=110.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||+|||.+.++..++..|+..||.|..+++|++|+++.. .+++|+||+|++||+|||+|++++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-~~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-ccCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 358999999999999999999999999999999999999885 456999999999999999999999998543
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.++||+++||.++.++..+|+.+|+++||.||+++.+|...++..+
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999998886443
No 55
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.71 E-value=1.8e-16 Score=150.72 Aligned_cols=119 Identities=34% Similarity=0.523 Sum_probs=105.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHH-HHHHHhCCCC-CccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPH-QFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~-eA~~~~~~~~-~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
+.+||+|||++.++..+..+|...|+.+..+.+|. +|++.+. .+ .||+|++|++||+|||+++++++|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-ELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 56899999999999999999999999999999996 9999985 45 59999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHH-HHHHHHhhCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ-LYREVSRFFPP 870 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~-L~~~l~~~~~~ 870 (876)
...+|+|++|++........++.+|+++|+.||+...+ |..++.+++..
T Consensus 77 ---------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 77 ---------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred ---------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 23578999999999988888899999999999977666 78888876543
No 56
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.71 E-value=5.5e-17 Score=181.31 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=106.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHh--HcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~--~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
.+||||||++..|+.++.++. .+|++|+ .|.||++|++++. +.+||+|++||.||+|||+++++.+|+.
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-e~~pDiviTDI~MP~mdGLdLI~~ike~------- 73 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAIKEQ------- 73 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh-------
Confidence 379999999999999999996 5688655 7999999999995 5789999999999999999999999984
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+-+|++|+..+=+...+|+++|+.|||.||++.++|..++.+..
T Consensus 74 ---------------~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 74 ---------------SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred ---------------CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999998764
No 57
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.67 E-value=1.7e-15 Score=168.73 Aligned_cols=123 Identities=26% Similarity=0.395 Sum_probs=113.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
..++||||||+..++..++.+|...|+.|..+.+|++|+..+.+ .+||+||.|+.||+||||++|+++|+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~------ 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLER------ 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccc------
Confidence 45799999999999999999999999999999999999999964 58999999999999999999999998642
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
...+|||++|+..+.....++++.|++|||+||++..+|...+.+.+...
T Consensus 204 --------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~ 253 (435)
T COG3706 204 --------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK 253 (435)
T ss_pred --------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999999999999999999988776543
No 58
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.66 E-value=6.9e-15 Score=174.20 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=110.9
Q ss_pred ecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHH---HHHHHHHHhhcc-------------CCCeE
Q 002821 353 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHI 416 (876)
Q Consensus 353 ~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qI---l~NLl~NAiKfT-------------~~G~I 416 (876)
+.+..++...-.+.+..+...+.++.+.+... .+..|+..+.++ |.||+.||++|+ +.|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34566666666666666665555555555443 256799999999 679999999996 23566
Q ss_pred EEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhH
Q 002821 417 FVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 496 (876)
Q Consensus 417 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~ 496 (876)
.+++... ...+.|+|+|+|.||+++.+
T Consensus 420 ~l~a~~~-----------------------------------------------------~~~v~I~V~DdG~GId~e~i 446 (670)
T PRK10547 420 ILSAEHQ-----------------------------------------------------GGNICIEVTDDGAGLNRERI 446 (670)
T ss_pred EEEEEEc-----------------------------------------------------CCEEEEEEEeCCCCCCHHHH
Confidence 6655321 12578999999999998654
Q ss_pred ---------------------hhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 497 ---------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 497 ---------------------~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
..||+|||..... .+..+|+|+||+|||++++.|||+|+++|.+|+||+|++++|+..
T Consensus 447 ~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 447 LAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred HHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 4699997764332 234579999999999999999999999999999999999999864
No 59
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.66 E-value=8.4e-16 Score=149.11 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=108.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.-|-||||+...|+.+..+|...||+|.+..++.+-+... ....+-++++|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~~~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-PLDRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-cCCCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 4699999999999999999999999999999999999985 45779999999999999999999999873
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
....|||++|++.+.....+++++|+-|||.|||+.+.|+.+|.+.+.
T Consensus 74 ------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 74 ------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred ------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999988664
No 60
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=1e-15 Score=151.43 Aligned_cols=115 Identities=27% Similarity=0.442 Sum_probs=104.9
Q ss_pred eEEEEeCCHHHHHHHHHHHhHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+||||||++....+-+.+++.. ||.++ .|.++++|..++. ...+||||+|+-||+.+|++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-~~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-hhCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999985 77655 6899999999885 5678999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
+.++-||++||..+.++..+++.+|+-|||.|||..+.|.++|.+|.
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999885
No 61
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.65 E-value=1.6e-15 Score=157.04 Aligned_cols=118 Identities=30% Similarity=0.361 Sum_probs=106.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcC-CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g-~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+||||||++..|..++.+|...+ ++|+ .+.||.++++.+ ....||+|+||+.||+|||+++++.||+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~--------- 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-RELKPDVVLLDLSMPGMDGLEALKQLRAR--------- 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-hhcCCCEEEEcCCCCCCChHHHHHHHHHH---------
Confidence 69999999999999999998876 7755 567799999986 46789999999999999999999999963
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.++++|+++|++.+.+...+++++|+++|+.|..+.++|.++|+..+...
T Consensus 72 -------------~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 72 -------------GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred -------------CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999999999999999999876443
No 62
>PLN03029 type-a response regulator protein; Provisional
Probab=99.61 E-value=8.4e-15 Score=153.31 Aligned_cols=119 Identities=26% Similarity=0.410 Sum_probs=104.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCC-------------------CCccEEEEeCCCCCCCH
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-------------------HQFDACFMDIQMPEMDG 789 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~-------------------~~~DlilmDi~MP~mdG 789 (876)
..+||||||++.++..+..+|+..|+.|.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 46899999999999999999999999999999999999987421 24789999999999999
Q ss_pred HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 790 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 790 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
+++++.||+.. ....+|||++|+....+...+|+++|+++|+.||++..+|.+.+..+
T Consensus 88 ~e~l~~ir~~~--------------------~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~ 145 (222)
T PLN03029 88 YDLLKKIKESS--------------------SLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHM 145 (222)
T ss_pred HHHHHHHHhcc--------------------ccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHH
Confidence 99999999732 12468999999999999999999999999999999999997765543
No 63
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.59 E-value=6.2e-15 Score=153.38 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=121.9
Q ss_pred cccHHHHHHHHHHhhhhccCcccceehhccCcchHHHHHHHhCceee-eecccccCCCCCCCC-CCCCCccceeEeec--
Q 002821 2 ARTRLLLIRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIK-RMDTFEHNPVHKDEP-SPIEEEYAPVIFAQ-- 77 (876)
Q Consensus 2 ~~~~~~f~~~~~~~~~~~p~~~~~~~~~~v~~~~r~~fe~~~~~~i~-~~~~~~~~~~~~~~~-~~~~~~y~pv~~~~-- 77 (876)
.+|+.+|+.|+. ++.-.-.+.|+.|.++|...+++.||..+-..+. ....+..+-.++..| ...+++|+||-|.+
T Consensus 80 ~it~~~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl 158 (348)
T COG3614 80 DITRREFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPL 158 (348)
T ss_pred CCcHHHHHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCC
Confidence 379999999998 8888889999999999999999999965322111 122121122334557 77888999997754
Q ss_pred CC-cceEEEeccCCChhchHHHHHHHhcCCceeecccccccc-----CcceEEEEEeeecCCCCCCCChHHHHHhhccee
Q 002821 78 DT-VSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKT-----NRLGVILTFAVYKRELPSNATPNERIEATDGYL 151 (876)
Q Consensus 78 ~~-~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~-----~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~ 151 (876)
.. |..++||||.|+|.||+|+..|++++...+|+|++|+|. ...|++++.|||+.+.++...+. ...+.||+
T Consensus 159 ~~~N~~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~g--q~~l~Gfl 236 (348)
T COG3614 159 NYDNRKALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPG--QAVLVGFL 236 (348)
T ss_pred CccchhhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcc--hhhhhhhH
Confidence 44 778999999999999999999999999999999999983 24689999999998665443322 33456888
Q ss_pred eeeeehHHHHH
Q 002821 152 GGIFDIESLVE 162 (876)
Q Consensus 152 ~~~~~v~~l~~ 162 (876)
+..+...+++.
T Consensus 237 ~~~~~~~~~~q 247 (348)
T COG3614 237 YLATRFEKLVQ 247 (348)
T ss_pred HHHHHHhhhhh
Confidence 88887776654
No 64
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.57 E-value=4.8e-14 Score=148.13 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=103.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..+...|... |+. |..+.++.+|++.+. ...||+|++|+.||++||+++++.||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-~~~pdlvllD~~mp~~~gle~~~~l~~~-------- 75 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-RFKPGLILLDNYLPDGRGINLLHELVQA-------- 75 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhc--------
Confidence 58999999999999999999874 774 678999999999985 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 76 --------------~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 76 --------------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 2357899999999999999999999999999999999999999774
No 65
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.56 E-value=7.7e-14 Score=145.73 Aligned_cols=117 Identities=22% Similarity=0.351 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQW---------- 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcC----------
Confidence 37999999999999999999999999999999999998874 4679999999999999999999999852
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.++|||++|+....+...+++++|+++|+.||++.++|...+.+.+..
T Consensus 71 -------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 71 -------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999876643
No 66
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.56 E-value=6.3e-14 Score=160.51 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=92.4
Q ss_pred EeecHHHHHHHHHHHHHHHhhccCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002821 389 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 464 (876)
Q Consensus 389 v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (876)
+.++...|.|++.|||+||++|++.+ .|.|.+....
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---------------------------------------- 69 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---------------------------------------- 69 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc----------------------------------------
Confidence 34567889999999999999999764 3555443210
Q ss_pred CCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC--CCCCCcccccHHHHHHHHHHcCCE-EEEEEeC
Q 002821 465 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 541 (876)
Q Consensus 465 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--~~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~ 541 (876)
.+...+.|+|+|+|+||+++.++++|++|++.+... ....||+||||++|+.++++|+|. |++.|.+
T Consensus 70 ----------~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~ 139 (535)
T PRK04184 70 ----------EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISST 139 (535)
T ss_pred ----------CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEec
Confidence 011246799999999999999999999997654322 234578999999999999999997 9999999
Q ss_pred CCcE-EEEEEEEeCC
Q 002821 542 NIGS-TFTFTAVFGN 555 (876)
Q Consensus 542 g~Gs-tF~~~lp~~~ 555 (876)
+.|+ .|+|++++..
T Consensus 140 ~~g~~~~~~~l~id~ 154 (535)
T PRK04184 140 GGSKKAYYFELKIDT 154 (535)
T ss_pred CCCceEEEEEEEecc
Confidence 9998 8999988753
No 67
>PRK11173 two-component response regulator; Provisional
Probab=99.54 E-value=1.2e-13 Score=145.89 Aligned_cols=117 Identities=23% Similarity=0.366 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+...|+..|+.|..+.++.+|+..+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+|||++|+.........++++|+++|+.||++.++|...+...+..
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999888776543
No 68
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.53 E-value=1.8e-13 Score=142.89 Aligned_cols=117 Identities=28% Similarity=0.435 Sum_probs=107.7
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||+|||++..+..+...|+..|+.|..+.++.+|+..+. .+.||+|++|+.||.++|+++++.+|+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~----------- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999862
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+..+.+....++++|+++|+.||++..+|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 2468999999999999999999999999999999999999999877654
No 69
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.52 E-value=2.2e-13 Score=142.56 Aligned_cols=116 Identities=28% Similarity=0.471 Sum_probs=106.9
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+...|+..|+.|.++.++.+|++.+. ...||+|++|+.||.++|+++++.+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~~~~~~g~~~~~~lr~~----------- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWDIVRMLRSA----------- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998874 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 70 -----------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999999987664
No 70
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.52 E-value=3.2e-14 Score=145.96 Aligned_cols=115 Identities=31% Similarity=0.513 Sum_probs=101.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+|+||||+...-..+..+|++.|..+-.++...+|++.+. .+.||+||+||.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 7999999999999999999999999999999999999985 688999999999999999999999998653
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+|||++|++..-. ..++..-.+|||.||++++.|-++|.|..+.
T Consensus 72 -------------~v~iifIssh~eya--~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 72 -------------AVPIIFISSHAEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred -------------cCcEEEEecchhhh--hhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 58999999985443 3444445589999999999999999988753
No 71
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.52 E-value=2.9e-13 Score=142.92 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=108.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~--------- 74 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-RESFHLMVLDLMLPGEDGLSICRRLRSQ--------- 74 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999875 4679999999999999999999999963
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+....+....++++|+++|+.||++.++|...+...+..
T Consensus 75 -------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 -------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred -------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999887653
No 72
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.52 E-value=2.6e-13 Score=140.98 Aligned_cols=116 Identities=28% Similarity=0.476 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~----------- 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-SGHYSLVVLDLGLPDEDGLHLLRRWRQK----------- 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999874 4679999999999999999999999863
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+....++++|+++|+.||++.++|...+.....
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 70 -----------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999999887654
No 73
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.51 E-value=2.4e-13 Score=141.58 Aligned_cols=116 Identities=26% Similarity=0.355 Sum_probs=106.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||+|||++..+..+...|...|+.|..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-NQHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999998875 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
+++|||++|+..+.....+++++|++||+.||++.++|...+...+.
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999988876543
No 74
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.51 E-value=2.1e-13 Score=144.57 Aligned_cols=115 Identities=20% Similarity=0.393 Sum_probs=101.7
Q ss_pred eEEEEeCCHHHHHHHHHHHhHc-CCEEE-EEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eA~~~~~~-~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+||||||++..+..+..+|... |+.+. .+.++.+|++.+.. ...||+||+|+.||+|||+++++.|++.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~-------- 74 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-------- 74 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--------
Confidence 7999999999999999999874 67644 78999999987742 3569999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.++
T Consensus 75 --------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 75 --------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred --------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2468999999999999999999999999999999999999998763
No 75
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.50 E-value=3.6e-13 Score=142.40 Aligned_cols=116 Identities=23% Similarity=0.297 Sum_probs=106.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-REQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999885 4679999999999999999999999962
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
...|||++|+........+++++|+++|+.||++..+|...+...+..
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 247999999999998899999999999999999999999999876543
No 76
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.50 E-value=4.4e-13 Score=140.48 Aligned_cols=114 Identities=27% Similarity=0.459 Sum_probs=104.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+...|+..|+.+..+.++.+|++.+. ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~----------- 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQT----------- 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999874 369999999999999999999999862
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
. .+|||++|+.........++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 -----------H-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred -----------C-CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 1 3899999999999999999999999999999999999999987654
No 77
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.49 E-value=4.1e-13 Score=142.28 Aligned_cols=115 Identities=19% Similarity=0.342 Sum_probs=103.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||+|||++..+..+...|+..|+.|..+.++.++++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-SETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999874 4679999999999999999999999852
Q ss_pred ccchhhhccCCCCCCcEEEEcCCC-CHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.++|||++|+.. ......+++++|+++|+.||++.++|...+...+.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 258999999854 56777899999999999999999999988877654
No 78
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.49 E-value=4.4e-13 Score=140.47 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||+|||++..+..+...|+..|+.+..+.++.+|++.+. .+.||+|++|+.||.++|+++++.||+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~--------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHLKRES--------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999885 46799999999999999999999998631
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+.+|||++|+..+.....+++++|+++|+.||++.++|...+...+..
T Consensus 73 -----------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 12468999999999999999999999999999999999999988876543
No 79
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.49 E-value=4.9e-13 Score=139.12 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=108.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~g~~~~~~l~~~~--------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRLRRRP--------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-hcCCCEEEEECCCCCCcHHHHHHHHHccc---------
Confidence 47999999999999999999999999999999999999885 46799999999999999999999998632
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+.+|||++|+........+++++|+++|+.||++.++|..++...+..
T Consensus 73 -----------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 73 -----------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred -----------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 12468999999999999999999999999999999999999999877643
No 80
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.48 E-value=7.6e-13 Score=137.76 Aligned_cols=116 Identities=26% Similarity=0.454 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||+|||++..+..+...|...|+.+.++.++.+|+..+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 6999999999999999999999999999999999999875 4679999999999999999999999862
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+|||++|+....+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 258999999999999999999999999999999999999999876643
No 81
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.48 E-value=5.9e-13 Score=143.13 Aligned_cols=119 Identities=26% Similarity=0.332 Sum_probs=104.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+|||||||+..+..+...|... ++.+ .++.+|.+|++.+. ...||+|++|+.||+|||+++++.||+...
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 48999999999999999999864 5554 47899999999885 567999999999999999999999997421
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
...+|||++|+........+++++|+++|+.||++.++|...+.++..
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 124799999999999999999999999999999999999999988764
No 82
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.48 E-value=6.9e-13 Score=137.58 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=106.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~i~~~----------- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRDILREWREK----------- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999875 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+....++++|+++|+.||++.++|..++...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 -----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999988887654
No 83
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.47 E-value=6.5e-13 Score=138.89 Aligned_cols=117 Identities=26% Similarity=0.345 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~ 807 (876)
++||||||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+ ++|+++++.||..
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~~~g~~~~~~i~~~-------- 71 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-QRLPDLAIIDIGLGEEIDGGFMLCQDLRSL-------- 71 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-hCCCCEEEEECCCCCCCCCHHHHHHHHHhc--------
Confidence 47999999999999999999999999999999999999874 467999999999997 5899999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+....++++|+++|+.||++.++|..++...+.
T Consensus 72 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 72 --------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999988877654
No 84
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.47 E-value=8.3e-13 Score=120.46 Aligned_cols=109 Identities=48% Similarity=0.716 Sum_probs=92.5
Q ss_pred ecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002821 391 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 469 (876)
Q Consensus 391 ~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (876)
+|+..|.+++.|++.||+++... +.|.|.+...+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~--------------------------------------------- 35 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG--------------------------------------------- 35 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC---------------------------------------------
Confidence 58899999999999999999976 66766654311
Q ss_pred CCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEE
Q 002821 470 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 549 (876)
Q Consensus 470 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~ 549 (876)
..+.|.|.|+|.|++++...++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|
T Consensus 36 --------~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 106 (111)
T smart00387 36 --------DHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTI 106 (111)
T ss_pred --------CEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 2467999999999999999999999987543 2334568999999999999999999999999899999999
Q ss_pred EEEe
Q 002821 550 TAVF 553 (876)
Q Consensus 550 ~lp~ 553 (876)
.+|+
T Consensus 107 ~~~~ 110 (111)
T smart00387 107 TLPL 110 (111)
T ss_pred EeeC
Confidence 9986
No 85
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.46 E-value=8.2e-13 Score=123.00 Aligned_cols=115 Identities=24% Similarity=0.346 Sum_probs=107.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
+..|+|||+....+.+...+++.||.|.++.+..||+..+. ...|...+.|+.|-+.+|++.++.||+.
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~lr~~---------- 78 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEALRER---------- 78 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHHHHhc----------
Confidence 46999999999999999999999999999999999999985 5789999999999999999999999984
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
..+..||++|++.+..+..++.+.|+++|+.||-+.+++..++.+-
T Consensus 79 ------------~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 79 ------------RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ------------CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 3467899999999999999999999999999999999999998776
No 86
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.45 E-value=1.4e-12 Score=134.98 Aligned_cols=116 Identities=27% Similarity=0.465 Sum_probs=106.0
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 811 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 811 (876)
||++||++..+..+...|...|+.+..+.++.+|++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~------------ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-KDDYDLIILDVMLPGMDGWQILQTLRRS------------ 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcc------------
Confidence 589999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 812 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 812 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|...+.+.+..
T Consensus 68 ----------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 ----------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred ----------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2468999999999999999999999999999999999999999876543
No 87
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.44 E-value=2.1e-12 Score=134.72 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=106.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+...|...|+.+..+.++.+++..+. ...||+|++|+.||.++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAF---------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999874 5679999999999999999999999963
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+.........++++|+++|+.||++.++|..++...+..
T Consensus 73 ------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 73 ------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred ------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 2468999999999988899999999999999999999999988876543
No 88
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.44 E-value=1.4e-12 Score=136.07 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=104.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC-E-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCC---CCHHHHHHHHHhhccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPE---MDGFEATKIIREMEHNFN 804 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~---mdG~e~~~~IR~~~~~~~ 804 (876)
.+||||||++..+..++.+|+..++ . +..+.++.++++.+. ...||+||+|+.||+ ++|++++++||..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----- 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRH----- 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-----
Confidence 4899999999999999999988765 3 667899999999875 467999999999999 5999999999863
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+.........++++|+++|+.||++.++|..+|.....
T Consensus 78 -----------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 -----------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -----------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 346899999999999999999999999999999999999999987654
No 89
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.42 E-value=2.2e-12 Score=150.70 Aligned_cols=117 Identities=26% Similarity=0.369 Sum_probs=107.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|...|+.|..+.++.+|+..+. ...||+||+|+.||++||+++++.||..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-~~~~DlvllD~~lp~~dgl~~l~~ir~~---------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEECCCCCCCCHHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999985 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+.+|+|++|+....+....++++|+++|+.||++.++|...+.+.+.
T Consensus 73 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999998877653
No 90
>PRK14084 two-component response regulator; Provisional
Probab=99.42 E-value=2.7e-12 Score=136.49 Aligned_cols=113 Identities=27% Similarity=0.348 Sum_probs=98.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcC-C-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYG-A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g-~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+||||||++..+..+..+|+..+ + .+..+.++.+|+..+. .+.||+||+|++||+|+|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-~~~~dlv~lDi~m~~~~G~~~~~~i~~~--------- 71 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-INQYDIIFLDINLMDESGIELAAKIQKM--------- 71 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 79999999999999999999876 4 5778999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
...+|||++|+.. +...+++++|+++|+.||++.++|..++.++.
T Consensus 72 -------------~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 72 -------------KEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred -------------CCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 2356789999864 35678999999999999999999999998865
No 91
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.41 E-value=3.5e-12 Score=134.37 Aligned_cols=116 Identities=31% Similarity=0.455 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||+|||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.||..
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-KEQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999874 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
+++|||++|+....+...+++++|+++|+.||++.++|...+...+.
T Consensus 76 -------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 76 -------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred -------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999998877653
No 92
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.41 E-value=3.6e-12 Score=130.80 Aligned_cols=117 Identities=16% Similarity=0.297 Sum_probs=106.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
+||++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||.++|+++++.++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR---------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 699999999999999999999999987 6999999999885 4679999999999999999999999863
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+..|||++|+.........++++|+++|+.||++.++|..++......
T Consensus 71 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 71 ------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2357899999999999999999999999999999999999999887543
No 93
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.41 E-value=3e-12 Score=149.09 Aligned_cols=118 Identities=35% Similarity=0.499 Sum_probs=108.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+...|...|+.|.++.++.+|+..+. .+.||+|++|+.||+|+|+++++.|++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlillD~~~p~~~g~~ll~~i~~~--------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-DIHPDVVLMDIRMPEMDGIKALKEMRSH--------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 458999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 74 -------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 74 -------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 246899999999999999999999999999999999999999987654
No 94
>PRK15115 response regulator GlrR; Provisional
Probab=99.40 E-value=2.2e-12 Score=149.67 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++.++..+...|+..|+.|..+.++.+|+..+. .+.||+||+|+.||+|||+++++.++..
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-~~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-REKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|...|.+.+.
T Consensus 75 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 75 ------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987653
No 95
>PRK09483 response regulator; Provisional
Probab=99.39 E-value=5e-12 Score=131.13 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=105.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+||||||++..+..+..+|+.. |+.+. .+.++.+++..+. ...||+|++|+.||+++|+++++.|++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999874 78876 6899999998885 4679999999999999999999999863
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|..........++..|+++|+.||++.++|..++.+++..
T Consensus 73 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 73 -------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999887654
No 96
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.38 E-value=2.8e-12 Score=156.57 Aligned_cols=402 Identities=21% Similarity=0.254 Sum_probs=277.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 002821 268 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 346 (876)
Q Consensus 268 ~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~-~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~ 346 (876)
..++++..+..++..++..++|..|+|++++++.+..+. ...+...+.-.+++..+....+..+++.-.+.++...|..
T Consensus 374 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~ 453 (786)
T KOG0519|consen 374 RAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTG 453 (786)
T ss_pred hhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCc
Confidence 344455556667778888888999999999999988543 4444455555667777888889999999999998877777
Q ss_pred eeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhh--ccCCCeE-EEEEEEe
Q 002821 347 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK--FTEKGHI-FVTVYLV 423 (876)
Q Consensus 347 ~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiK--fT~~G~I-~v~v~~~ 423 (876)
..+...+.+..++...+.........+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..|+= ...+...
T Consensus 454 ~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 533 (786)
T KOG0519|consen 454 LGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAE 533 (786)
T ss_pred ccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEec
Confidence 777888999999999999998888888888888888888889999999999999999999999 8877731 2333221
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccc
Q 002821 424 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 503 (876)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 503 (876)
.- ...+++...+ ...-|. ...+.....+.+.+++++.|+....++..|..|
T Consensus 534 ~~-~~~vd~~~~~--------------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 584 (786)
T KOG0519|consen 534 LL-GISVDVSLSL--------------SLAFWF--------------LDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLH 584 (786)
T ss_pred cc-Cccccccccc--------------hhhhhh--------------cccccccchheEEeeeccccccCCCcchhhhhh
Confidence 00 0000000000 000010 000111135789999999999999999888888
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEE-eCCC----cEEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 002821 504 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNI----GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 578 (876)
Q Consensus 504 ~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S-~~g~----GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (876)
.+....+++...+.+++++.|.+..+.++|.+++.- ..+. -+.+.+............... .............
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~ 663 (786)
T KOG0519|consen 585 KSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSG-NPEKLAEPRDSKL 663 (786)
T ss_pred hccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCC-CcccccCcccccc
Confidence 776666555557889999999999999999998762 1111 011111111000000000000 0001111113456
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
++|.++|+||++++++.|....|..+|..+..+.+..+|+..+. ....++++++|..+...++. ....++++...
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~---e~~~~irk~~~- 738 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGY---EATREIRKKER- 738 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchH---HHHHHHHHhhc-
Confidence 78999999999999999999999999999999999999999887 55789999999999888873 33445555443
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
..+.++.++.+..+....+ ....|...++.||+....+..++++.+
T Consensus 739 ~~~pIvAlTa~~~~~~~~~-c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 739 WHLPIVALTADADPSTEEE-CLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCCCEEEEecCCcHHHHHH-HHHhCCceEEcccccHHHHHHHHHHHh
Confidence 3333443333333222222 234488899999999999999888765
No 97
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.38 E-value=3.2e-12 Score=148.37 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=102.9
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-----CCHHHHHHHHHhhccccccc
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-----MDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~-----mdG~e~~~~IR~~~~~~~~~ 806 (876)
||||||++.++..+...| .||.|.++.++.+|++.+. ...||+||+|+.||+ |||++++++|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-RHEPAVVTLDLGLPPDADGASEGLAALQQILAI------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh-------
Confidence 689999999999999988 7999999999999999985 467999999999996 9999999999863
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+..+.+...+|+++|+++|+.||++.++|..+|.+.+.
T Consensus 71 ---------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 ---------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 346899999999999999999999999999999999999998876543
No 98
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=2.8e-12 Score=148.67 Aligned_cols=116 Identities=31% Similarity=0.478 Sum_probs=106.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+...|+..|+.+.++.++.+|+..+. ...||+||+|+.||+|+|++++++||+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|++...+...+++++|+.+|+.||++.++|...+.+.+
T Consensus 75 ------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l 121 (441)
T PRK10365 75 ------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999887654
No 99
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.38 E-value=4.7e-12 Score=141.38 Aligned_cols=114 Identities=28% Similarity=0.341 Sum_probs=98.1
Q ss_pred eEEEEeCCHHHHHHHHHHHh-HcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLK-RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~-~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+||||||++..+..+..+|. ..|+.+. .+.++.+|++.+. .+.||+|+||+.||+|||++++++|++.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-~~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-AQPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-ccCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 79999999999999999994 5688876 6899999999985 5679999999999999999999999862
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCC--HHhHHHHHHcCCCeeEeCCC---------CHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPF---------EAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~---------~~~~L~~~l~~~~ 868 (876)
.++|||++|+... .+...+|+++|+++|+.||+ ..++|...|++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 2479999998754 45667899999999999999 6677888877654
No 100
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.37 E-value=2.6e-12 Score=108.12 Aligned_cols=66 Identities=38% Similarity=0.748 Sum_probs=61.9
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhC-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMD-TELDVTQ-QDYVRTAQASGKALVSLINEVLDQAKVESG 344 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~-~~l~~~~-~~~l~~i~~~~~~L~~lindlLd~skie~g 344 (876)
+|.+|++++||||||||++|.+++++|.. ...++++ +++++.+..++++|..+++++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999998 7788888 999999999999999999999999999987
No 101
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.37 E-value=5e-12 Score=133.60 Aligned_cols=114 Identities=24% Similarity=0.280 Sum_probs=96.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC-E-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+|||+||++..+..+..+|+..|. . +..+.++.+|++.+. .+.||++|+|++||+|||+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlv~lDi~~~~~~G~~~~~~l~~~-------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-RLKPDVVFLDIQMPRISGLELVGMLDPE-------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHhccc--------
Confidence 3799999999999999999998883 3 456899999999875 4679999999999999999999988631
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
...+||++|+.. +...++++.|+.+|+.||++.++|..++.++..
T Consensus 73 ---------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 ---------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ---------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 134688899864 466789999999999999999999999988753
No 102
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.37 E-value=9.3e-12 Score=128.05 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=104.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.++..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~-------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQI-------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHh--------
Confidence 47999999999999999999876 57775 6889999998875 5679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+.+|||++|+.........++++|+++|+.||++.++|..++...+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 75 --------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred --------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 2358999999999989999999999999999999999999999876654
No 103
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.37 E-value=7e-12 Score=127.81 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=101.8
Q ss_pred eEEEEeCCHHHHHHHHHHHhHc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+||||||++..+..+...|... |+. +..+.++.++++.+. .+.||+|++|+.||+++|+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999854 565 567899999999885 567999999999999999999988863
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+|||++|.....+....|+++|+++|+.||++.++|..++.+....
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999987654
No 104
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.36 E-value=4.7e-12 Score=147.69 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=105.2
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 811 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 811 (876)
||||||++..+..+...|+..|+.|..+.++.+|+..+. .+.||+|++|+.||+|||+++++.|++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlVllD~~~p~~~g~~ll~~l~~~------------ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-RGQPDLLITDVRMPGEDGLDLLPQIKKR------------ 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHHh------------
Confidence 689999999999999999999999999999999999885 4679999999999999999999999863
Q ss_pred cchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 812 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 812 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+|||++|+........+|+++|+++|+.||++.++|...+.+.+
T Consensus 68 ----------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 68 ----------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred ----------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998754
No 105
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.36 E-value=1.5e-11 Score=129.51 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||+|||++..+..+...|...|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999852
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+|||++++.........++++|+++|+.||++.++|...+...+.
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 25899999999988889999999999999999999999988877654
No 106
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.34 E-value=2.1e-11 Score=126.41 Aligned_cols=116 Identities=32% Similarity=0.494 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||++||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|++.++.++..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~vild~~~~~~~~~~~~~~i~~~----------- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-SEMYALAVLDINMPGMDGLEVLQRLRKR----------- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998774 4679999999999999999999999863
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|.....+...+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 -----------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred -----------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999998887654
No 107
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.34 E-value=9.9e-12 Score=144.93 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=86.7
Q ss_pred hhcCCEEEEEeCCCCCceEe--ecHHHHHHHHHHHHHHHhhccCCCe----EEEEEEEeeccccchhhhhhhccccCcCC
Q 002821 371 QDKGVELAVYISDRVPETLI--GDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLS 444 (876)
Q Consensus 371 ~~k~i~l~~~~~~~~p~~v~--~D~~rl~qIl~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 444 (876)
..+.+.+...+..+.+ .+. .|...|.+++.|||+||+||+..++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~---------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE---------------------- 77 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE----------------------
Confidence 4567888777765543 233 3578899999999999999997654 4444421
Q ss_pred CCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCC----CCCCCCccccc
Q 002821 445 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS----ISRTHGGTGIG 520 (876)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s----~~~~~~GtGLG 520 (876)
....+.|.|+|+|+||++++++++|++|++.+.- .++...|.|||
T Consensus 78 -------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLg 126 (795)
T PRK14868 78 -------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGIS 126 (795)
T ss_pred -------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehH
Confidence 0124689999999999999999999999865421 12333455555
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCC-c--EEEEEEE
Q 002821 521 LSISKYLVGRMKGEIGFVSIPNI-G--STFTFTA 551 (876)
Q Consensus 521 LsI~k~lv~~mgG~I~v~S~~g~-G--stF~~~l 551 (876)
|++|...+ .+||.|.+.|..+. + +.|.+.+
T Consensus 127 lai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~I 159 (795)
T PRK14868 127 AAVLYSQL-TSGKPAKITSRTQGSEEAQYFELII 159 (795)
T ss_pred HHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEE
Confidence 55555555 37888999999754 3 3345544
No 108
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.34 E-value=6.9e-12 Score=142.44 Aligned_cols=112 Identities=24% Similarity=0.383 Sum_probs=87.1
Q ss_pred EeecHHHHHHHHHHHHHHHhhccCC-C---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002821 389 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 464 (876)
Q Consensus 389 v~~D~~rl~qIl~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (876)
+.+|...|.|++.||++||++|+.. | .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 4568999999999999999999965 4 354444210
Q ss_pred CCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC--CCCCCcccccHHHHHHHHHHcCCE-EEEEEeC
Q 002821 465 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 541 (876)
Q Consensus 465 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--~~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~ 541 (876)
+...+.|+|+|+|+||+++.++++|++|++.+... ....||.|+||++|+.++++|+|. +.+.|..
T Consensus 61 -----------g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 61 -----------GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred -----------CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 01135799999999999999999999998765432 224578999999999999999999 9999998
Q ss_pred CCcEEEEEEEEe
Q 002821 542 NIGSTFTFTAVF 553 (876)
Q Consensus 542 g~GstF~~~lp~ 553 (876)
+ |+.|...+.+
T Consensus 130 ~-g~~~~~~~~~ 140 (488)
T TIGR01052 130 G-GEIYVYKMKL 140 (488)
T ss_pred C-CceEEEEEEE
Confidence 7 6766333333
No 109
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.31 E-value=2e-11 Score=126.84 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=93.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH-HHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT-KIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~-~~IR~~~~~~~~~~ 807 (876)
..++++|||+|..+..++..|...-..+..+.++.+|++.+. +||+||||+.||++||++++ +.||..
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~-------- 78 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRK-------- 78 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHh--------
Confidence 357999999999999999999843234556789999998752 39999999999999999997 567763
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHH--cCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~--aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.++++||++|+... ....++. +|++||+.|+.+.++|.++|+..+.
T Consensus 79 --------------~p~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 79 --------------NNNIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred --------------CCCCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 34689999999866 3345555 5999999999999999999986554
No 110
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.31 E-value=2.8e-11 Score=136.11 Aligned_cols=114 Identities=25% Similarity=0.368 Sum_probs=96.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++.++..+..+|... |+.+. .+.++.+|++.+. .+.||+|++|++||.|||++++++|++.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-~~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-KLNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-hhCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 48999999999999999999876 88877 8899999999885 5679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCC--HHhHHHHHHcCCCeeEeCCCCH---------HHHHHHHHhh
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFEA---------EQLYREVSRF 867 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~---------~~L~~~l~~~ 867 (876)
. .+|||++|+... .....+++++|+++|+.||++. ++|...++..
T Consensus 75 --------------~-~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~ 130 (354)
T PRK00742 75 --------------R-PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAA 130 (354)
T ss_pred --------------C-CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHH
Confidence 1 289999997643 4667789999999999999953 5566665554
No 111
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.30 E-value=2.3e-11 Score=125.55 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=89.3
Q ss_pred HHHHHHHHhH---cCCEEEEEcCHHHHHHHhCCCCCccEEE---EeCCCCCCCHHHHHHHHHhhcccccccccccccchh
Q 002821 742 LKVAAAGLKR---YGAAVVCVERGKKATELLMPPHQFDACF---MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 815 (876)
Q Consensus 742 ~~vl~~~L~~---~g~~v~~a~~g~eA~~~~~~~~~~Dlil---mDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 815 (876)
|..+..+|.. .|+.|.++.++.++++.+. ...||+++ +|+.||+|||++++++||+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-RISFSAVIFSLSAMRSERREGLSCLTELAIK---------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-cCCCCEEEeeccccCCCCCCHHHHHHHHHHH----------------
Confidence 5667788865 5777889999999999875 56789998 78899999999999999873
Q ss_pred hhccCCCCCCcEEEEcCCCCHHhHHHHH-HcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 816 AYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 816 ~~~~~~~~~~pIIalTa~~~~~~~~~~~-~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+.+|||++|+...+.....++ ++|++|||.||++.++|..+|+..+..
T Consensus 66 ------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 66 ------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 3568999999987776666655 799999999999999999999986654
No 112
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.28 E-value=4.1e-11 Score=121.78 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.|+..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~d~~~~~~~~~~~~~~l~~~---------- 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-GLRFGCVVTDVRMPGIDGIELLRRLKAR---------- 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-cCCCCEEEEeCCCCCCcHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999998875 4679999999999999999999999862
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+.........++++|+++|+.||++.++|...+...+.
T Consensus 73 ------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 73 ------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999888876543
No 113
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.28 E-value=3.9e-11 Score=107.59 Aligned_cols=101 Identities=46% Similarity=0.591 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhccC--CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCC
Q 002821 396 FRQIITNLMGNSIKFTE--KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 473 (876)
Q Consensus 396 l~qIl~NLl~NAiKfT~--~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (876)
|.+++.+|++||++|.. .+.|.|.+...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-------------------------------------------------- 30 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-------------------------------------------------- 30 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec--------------------------------------------------
Confidence 46899999999999997 46555554321
Q ss_pred CcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEE
Q 002821 474 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 551 (876)
Q Consensus 474 ~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~l 551 (876)
...+.|.|.|+|.|+++..+++.|.+|. ........++.|+||++|+++++.|||++++.+..+.|++|++++
T Consensus 31 ---~~~~~v~i~d~g~g~~~~~~~~~~~~~~--~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 31 ---GDHLEIRVEDNGPGIPEEDLERIFERFS--DGSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred ---CCEEEEEEEeCCCCCCHHHHHHHhhhhh--cCCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 1247899999999999999999999882 112223446899999999999999999999999998999998863
No 114
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.28 E-value=2.6e-11 Score=141.67 Aligned_cols=114 Identities=23% Similarity=0.318 Sum_probs=88.5
Q ss_pred eecHHHHH---HHHHHHHHHHhhccCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 002821 390 IGDPGRFR---QIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 462 (876)
Q Consensus 390 ~~D~~rl~---qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (876)
.|++..++ +|+.||++||++|+..+ .|.|.+...
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~--------------------------------------- 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL--------------------------------------- 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC---------------------------------------
Confidence 45555555 99999999999998653 455554211
Q ss_pred CCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC--CCCCCcccccHHHHHHHHHHc-CCEEEEEE
Q 002821 463 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRM-KGEIGFVS 539 (876)
Q Consensus 463 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~--~~~~~GtGLGLsI~k~lv~~m-gG~I~v~S 539 (876)
+...+.|.|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+++++ ||.+.+.|
T Consensus 69 -------------g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S 135 (659)
T PRK14867 69 -------------GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITT 135 (659)
T ss_pred -------------CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEE
Confidence 11246799999999999999999999998654311 134578999999999999886 56699999
Q ss_pred eCCCcEEEEEEEEeCC
Q 002821 540 IPNIGSTFTFTAVFGN 555 (876)
Q Consensus 540 ~~g~GstF~~~lp~~~ 555 (876)
.++.|++|++.+|+..
T Consensus 136 ~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 136 STGDGKIHEMEIKMSV 151 (659)
T ss_pred EcCCCEEEEEEEEEEe
Confidence 9999999999998853
No 115
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.27 E-value=2.3e-11 Score=131.73 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=90.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g--~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
|||||||.+..|++++.+|...| ..|-++.||.+|++++. ...||+|.||+.||.|||++++++|-+.
T Consensus 3 rVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-~~~PDVi~ld~emp~mdgl~~l~~im~~--------- 72 (350)
T COG2201 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGLEALRKIMRL--------- 72 (350)
T ss_pred EEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-hcCCCEEEEecccccccHHHHHHHHhcC---------
Confidence 89999999999999999999998 56668999999999996 5789999999999999999999999752
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCC--HHhHHHHHHcCCCeeEeCCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFE 856 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~ 856 (876)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 --------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 --------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred --------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3689999887444 456678999999999999974
No 116
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.25 E-value=7.8e-11 Score=136.56 Aligned_cols=117 Identities=28% Similarity=0.428 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||+|||++..+..+...|...|+.+.++.++.+++..+. .+.||+|++|+.||+++|+++++.||+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-REQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 7999999999999999999999999999999999999885 46799999999999999999999998632
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+.+|||++|+........+++++|+++|+.||++.++|..++.+..
T Consensus 73 ----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 73 ----------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred ----------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999998887753
No 117
>PRK13435 response regulator; Provisional
Probab=99.25 E-value=1.2e-10 Score=113.29 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=98.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+|||+||++.....+...|+..|+.+. ++.++.++++.+. ...||+|++|+.|+ +++|.+..+.+++.
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-RRQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-hcCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999877 7899999998874 45799999999998 59999999988751
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.++|||+++.... ...++.+|+++|+.||++.++|...|.++..
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2589999997643 3567889999999999999999999988754
No 118
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.25 E-value=3.4e-11 Score=118.28 Aligned_cols=112 Identities=28% Similarity=0.361 Sum_probs=95.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.++|++||++.++..+...|...||.+ .++.+|.++.+... .+.||+||||+.||.-|-.+.... .+
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~~~-~~---------- 73 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEALLL-AS---------- 73 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHHHH-hh----------
Confidence 589999999999999999999999965 47889999988874 688999999999999994333322 22
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
.+...|||++|++.+++..+.+.++|+.+||.||++...|+-.|.
T Consensus 74 ------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 134579999999999999999999999999999999998887664
No 119
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.25 E-value=6e-11 Score=114.51 Aligned_cols=98 Identities=14% Similarity=0.329 Sum_probs=77.0
Q ss_pred ecHHHHHHHHHHHHHHHhhccC----CCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002821 391 GDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 466 (876)
Q Consensus 391 ~D~~rl~qIl~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (876)
.|...+.+++.|+++||++|+- .|.|.|++...+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~------------------------------------------ 72 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIED------------------------------------------ 72 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeC------------------------------------------
Confidence 3667899999999999999852 356666654311
Q ss_pred CCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEE
Q 002821 467 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 546 (876)
Q Consensus 467 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~Gst 546 (876)
..+.++|.|+|.||+ ..+++|+||+..++ ..+|+|+||++++++ .++++++|.++.|++
T Consensus 73 -----------~~~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~ 131 (137)
T TIGR01925 73 -----------HEVYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTK 131 (137)
T ss_pred -----------CEEEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeE
Confidence 147899999999998 37789999986533 235899999998874 579999999999999
Q ss_pred EEEEE
Q 002821 547 FTFTA 551 (876)
Q Consensus 547 F~~~l 551 (876)
|+++.
T Consensus 132 v~i~~ 136 (137)
T TIGR01925 132 IIMKK 136 (137)
T ss_pred EEEEe
Confidence 99863
No 120
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.21 E-value=8.5e-11 Score=143.46 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=102.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++.++..+..+|...|+.|..+.++.+|+..+. ...||+||+|+.||+|+|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999863
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHH--HHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE--QLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~--~L~~~l~~~~ 868 (876)
.+.+|||++|+..+.+...+++++|+++|+.||.+.. .+..++.+..
T Consensus 77 ------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 77 ------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999997643 5555555443
No 121
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.20 E-value=2.8e-10 Score=117.32 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=103.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.++..
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~l~~~~~~~~~~~l~~~-------- 77 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 77 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 48999999999999999999875 5654 46899999999884 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|+|++++.........++++|+++|+.||++.++|...+.+.+..
T Consensus 78 --------------~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 78 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999887654
No 122
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.19 E-value=3.2e-10 Score=115.84 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=103.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||++||++..+..+...|... ++.+ ..+.++.+++..+. .+.||+|++|+.||.++|+++++.+++.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~-------- 74 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQR-------- 74 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH--------
Confidence 58999999999999999999875 4664 47889999998774 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|+|++|+.........++.+|+++|+.||++.++|...+..+...
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 75 --------------WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999876543
No 123
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.19 E-value=3.5e-10 Score=116.36 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=102.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhH-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+|||+||++..+..+...|+. .++.+. .+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~~~~~~~~l~~~-------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-RLDPDVILLDLNMKGMSGLDTLNALRRD-------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 4799999999999999999975 577765 6899999998874 4679999999999999999999999863
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|++++|..........++++|+++|+.||++.++|...+.+...
T Consensus 78 --------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 78 --------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred --------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 235789999998888889999999999999999999999999987543
No 124
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.19 E-value=6.8e-10 Score=102.91 Aligned_cols=119 Identities=32% Similarity=0.451 Sum_probs=104.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||++|+++.....+...|...|+ .+.++.++.+++..+. .+.||++++|..+|.++|++..+.++...
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 5899999999999999999999998 4778999999998874 46799999999999999999999998631
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+.+|+++++..........++++|+++|+.||++.++|...+.+++.
T Consensus 77 ------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 77 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred ------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1235799999988888888999999999999999999999999887653
No 125
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.16 E-value=4.1e-09 Score=126.04 Aligned_cols=140 Identities=25% Similarity=0.413 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhHhh--hcCCEEEEEeCCCCCceEeecHHHHHHH---HHHHHHHHhhcc-------------CCCeEEE
Q 002821 357 AILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHIFV 418 (876)
Q Consensus 357 ~ll~~v~~~~~~~a~--~k~i~l~~~~~~~~p~~v~~D~~rl~qI---l~NLl~NAiKfT-------------~~G~I~v 418 (876)
.++...-.+.+..+. .|.++|.+.-.+ ..-|+.-|.++ |.+||.||+.|. +.|.|.+
T Consensus 394 ~vf~RfpR~VRdla~~lgK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L 468 (716)
T COG0643 394 QVFSRFPRMVRDLARKLGKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITL 468 (716)
T ss_pred HHHhhccHHHHHHHHHhCCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEE
Confidence 444443333444443 456666654322 34588888887 899999999995 2366666
Q ss_pred EEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhh---
Q 002821 419 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA--- 495 (876)
Q Consensus 419 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~--- 495 (876)
+++. ...++.|+|+|.|.||..+.
T Consensus 469 ~A~~-----------------------------------------------------~gn~ivIev~DDG~Gid~ekI~~ 495 (716)
T COG0643 469 SAYH-----------------------------------------------------EGNNIVIEVSDDGAGIDREKIRE 495 (716)
T ss_pred EEEc-----------------------------------------------------CCCeEEEEEeeCCCCCCHHHHHH
Confidence 5532 22368899999999999863
Q ss_pred ---------------------HhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 496 ---------------------QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 496 ---------------------~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
..-||.|=|.+.... ..-+|-|.||=+||.-|+.+||.|.|+|++|+||+|++.||++
T Consensus 496 KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~V-tdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 496 KAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQV-TDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred HHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhh-hcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcH
Confidence 356899955443332 2457999999999999999999999999999999999999986
Q ss_pred C
Q 002821 555 N 555 (876)
Q Consensus 555 ~ 555 (876)
.
T Consensus 575 L 575 (716)
T COG0643 575 L 575 (716)
T ss_pred H
Confidence 3
No 126
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.16 E-value=4.3e-10 Score=116.45 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=95.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCC---EEEEEcCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhcccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~---~v~~a~~g~eA~~~~~~~~~~DlilmDi~--MP~mdG~e~~~~IR~~~~~~~~ 805 (876)
.||||||++..+..++.+|...++ .|..+.++.+++..+. ...||+||||+. ||.+||.+++++|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------ 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQ------ 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHH------
Confidence 489999999999999999987653 3457899999999874 467999999976 8989999999999873
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCe-eEeCCCCHHHHHHHHHhhCCC
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG-YVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~-yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+.++||++|+........ ++..|.++ |+.|+.+.++|..++......
T Consensus 75 ----------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 75 ----------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred ----------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 3468999999987765543 55556655 899999999999999876643
No 127
>PRK03660 anti-sigma F factor; Provisional
Probab=99.15 E-value=4e-10 Score=109.98 Aligned_cols=101 Identities=19% Similarity=0.359 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002821 392 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 467 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (876)
|...+.+++.|++.||++|+.. |.|.|++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 6788999999999999998632 4555554321
Q ss_pred CCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002821 468 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 547 (876)
Q Consensus 468 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 547 (876)
...+.|.|.|+|.||++ ..++|+||++.+. ..+++|+||+|+++ +.+++++++.++.||+|
T Consensus 72 ---------~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~ 132 (146)
T PRK03660 72 ---------EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTV 132 (146)
T ss_pred ---------CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEE
Confidence 11478999999999986 6689999986433 22578999999875 45689999999999999
Q ss_pred EEEEEeCC
Q 002821 548 TFTAVFGN 555 (876)
Q Consensus 548 ~~~lp~~~ 555 (876)
+++.++..
T Consensus 133 ~i~~~~~~ 140 (146)
T PRK03660 133 RMKKYLKK 140 (146)
T ss_pred EEEEEecc
Confidence 99998854
No 128
>PRK09191 two-component response regulator; Provisional
Probab=99.12 E-value=7.9e-10 Score=118.52 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=98.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||++||++..+..+...|+..|+.+. .+.++.++++.+. .+.||+|++|+.||+ ++|+++++.++..
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-~~~~dlvi~d~~~~~~~~g~e~l~~l~~~------- 208 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-KTRPGLILADIQLADGSSGIDAVNDILKT------- 208 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-ccCCCEEEEecCCCCCCCHHHHHHHHHHh-------
Confidence 35799999999999999999999999887 7899999999885 467999999999995 8999999999862
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
. ++|||++|+...... .+...|+++|+.||++.++|...|.+....
T Consensus 209 ---------------~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 209 ---------------F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred ---------------C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 2 689999999765443 344567889999999999999999886543
No 129
>PRK10693 response regulator of RpoS; Provisional
Probab=99.05 E-value=9e-10 Score=121.00 Aligned_cols=89 Identities=27% Similarity=0.357 Sum_probs=78.9
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHH
Q 002821 758 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 837 (876)
Q Consensus 758 ~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~ 837 (876)
.+.+|.+|++.+. ...||+|++|+.||+|||++++++||+. .+.+|||++|+....+
T Consensus 2 ~a~~g~~al~~l~-~~~pDlVL~D~~mp~~~Gle~~~~ir~~----------------------~~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLG-GFTPDLIICDLAMPRMNGIEFVEHLRNR----------------------GDQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------------------CCCCcEEEEECCCCHH
Confidence 4789999999885 4679999999999999999999999973 2368999999999999
Q ss_pred hHHHHHHcCCCeeEeCCC-CHHHHHHHHHhhCC
Q 002821 838 TYEECLRSGMDGYVSKPF-EAEQLYREVSRFFP 869 (876)
Q Consensus 838 ~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~ 869 (876)
...+++++|++||+.||+ +.++|...|.+.+.
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 999999999999999999 58999888877653
No 130
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-07 Score=100.31 Aligned_cols=193 Identities=12% Similarity=0.213 Sum_probs=135.8
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 278 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 278 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
..+.+...-.-.||-.-+++|.--+.+++.-..+++.+...+.|+.-+.++-.-+..+|..-|- -...+..+.+
T Consensus 301 siRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~q 374 (497)
T COG3851 301 SIRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQ 374 (497)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCC------cccccccHHH
Confidence 3445555556667888899999888888775555555555666666555655555555543221 1123456788
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhc
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 437 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~ 437 (876)
.+..+++.+.. .++||...++...+....-..-..-+.++...+++|-+||.+...|.+.++..++
T Consensus 375 ai~~l~~Em~~--~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e------------ 440 (497)
T COG3851 375 AIRSLLREMEL--EERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE------------ 440 (497)
T ss_pred HHHHHHHHhhh--hhcCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc------------
Confidence 88888887754 5778887776542211100011124788999999999999998888887764322
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002821 438 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 517 (876)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 517 (876)
.+.++|+|+|.|+|+. .+-+
T Consensus 441 -----------------------------------------~l~Lei~DdG~Gl~~~-------------------~~v~ 460 (497)
T COG3851 441 -----------------------------------------RLMLEIEDDGSGLPPG-------------------SGVQ 460 (497)
T ss_pred -----------------------------------------EEEEEEecCCcCCCCC-------------------CCcc
Confidence 4789999999999863 1347
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002821 518 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 552 (876)
Q Consensus 518 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 552 (876)
|.||.=-++=|..+||+++++| ..||...+++|
T Consensus 461 G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 461 GFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred CcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 8999999999999999999999 67999999987
No 131
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.02 E-value=4.6e-09 Score=93.24 Aligned_cols=112 Identities=35% Similarity=0.523 Sum_probs=99.8
Q ss_pred EEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccccc
Q 002821 733 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 812 (876)
Q Consensus 733 LvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 812 (876)
|++|+++..+..+...|...|+.+..+.++.+++..+. .+.||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~l~~~------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRIRKR------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-hCCCCEEEEecCCCCCchHHHHHHHHHh-------------
Confidence 57899999999999999999999999999999998875 4679999999999999999999999863
Q ss_pred chhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 813 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 813 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
...+|+++++..........++..|+++|+.||++..+|...+.+.
T Consensus 67 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2357999999887788888999999999999999999999988764
No 132
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.01 E-value=2e-07 Score=105.32 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=84.9
Q ss_pred hhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCcc
Q 002821 370 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 449 (876)
Q Consensus 370 a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (876)
...-++.+........+..-..-..-+-+|+.--++||+||+..-++.|++...+
T Consensus 254 ~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~------------------------- 308 (365)
T COG4585 254 EERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTD------------------------- 308 (365)
T ss_pred HhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcC-------------------------
Confidence 3444555555443211111123456789999999999999998888888775322
Q ss_pred ccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHH
Q 002821 450 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 529 (876)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~ 529 (876)
..+.++|.|+|.|.+++.. +.|+||.=-|+=|+
T Consensus 309 ----------------------------~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~mreRv~ 341 (365)
T COG4585 309 ----------------------------DELRLEVIDNGVGFDPDKE-------------------GGGFGLLGMRERVE 341 (365)
T ss_pred ----------------------------CEEEEEEEECCcCCCcccc-------------------CCCcchhhHHHHHH
Confidence 2488999999999886421 16899999999999
Q ss_pred HcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 530 RMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 530 ~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
.+||++.+.|.+|+||+.++++|+
T Consensus 342 ~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 342 ALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred HcCCEEEEEecCCCceEEEEecCC
Confidence 999999999999999999999984
No 133
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.95 E-value=4e-07 Score=94.87 Aligned_cols=194 Identities=21% Similarity=0.288 Sum_probs=131.4
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 358 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~l 358 (876)
.|..++.-+.|-+++=|..|..++.+-.....++ -.+.++..+.-... +.++.+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~s-la~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQS-LALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH-HHHHHHHHhcC---------CcceEcHHHH
Confidence 4667888899999999999999988765544443 33333333322222 23344444332 1234677788
Q ss_pred HHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeec-HHHHHHHHHHHHHHHhhcc----CCCeEEEEEEEeeccccchhhh
Q 002821 359 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVE 433 (876)
Q Consensus 359 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D-~~rl~qIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~ 433 (876)
++.+...+.+....+++.+.....+.+ .+-.| ..-|--|+.-|++||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 887777776654556677776655432 22222 3457889999999999996 25777777654221
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCC
Q 002821 434 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 513 (876)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~ 513 (876)
.....+.|.|+|.|+|.+.- .
T Consensus 157 -------------------------------------------~~~~~l~v~deg~G~~~~~~----------------~ 177 (221)
T COG3920 157 -------------------------------------------GGRFLLTVWDEGGGPPVEAP----------------L 177 (221)
T ss_pred -------------------------------------------CCeEEEEEEECCCCCCCCCC----------------C
Confidence 00357899999999996420 0
Q ss_pred CCcccccHHHHHHHH-HHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 514 HGGTGIGLSISKYLV-GRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 514 ~~GtGLGLsI~k~lv-~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
...|+|+.+++.+| ++.||.+...+.. ||+|++++|...
T Consensus 178 -~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 -SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred -CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24699999999999 8999999887765 999999998753
No 134
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.84 E-value=4.7e-08 Score=97.06 Aligned_cols=103 Identities=19% Similarity=0.293 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002821 392 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 467 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (876)
|...++-++..++.||++|... |.|.|++...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~------------------------------------------- 75 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYE------------------------------------------- 75 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEEC-------------------------------------------
Confidence 5567889999999999999843 45666654321
Q ss_pred CCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002821 468 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 547 (876)
Q Consensus 468 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 547 (876)
..+.|.|+|+|+|++++.....|.||+...+.. ...+.|+||.+++.|++. +.+.+ ..|++|
T Consensus 76 ----------~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v 137 (161)
T PRK04069 76 ----------DRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTV 137 (161)
T ss_pred ----------CEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEE
Confidence 257899999999999999999999987654322 234679999999999986 66665 468999
Q ss_pred EEEEEeCC
Q 002821 548 TFTAVFGN 555 (876)
Q Consensus 548 ~~~lp~~~ 555 (876)
+++-.+..
T Consensus 138 ~~~k~~~~ 145 (161)
T PRK04069 138 SMTKYINR 145 (161)
T ss_pred EEEEEcCc
Confidence 99876654
No 135
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.82 E-value=2.3e-06 Score=96.07 Aligned_cols=184 Identities=22% Similarity=0.325 Sum_probs=128.3
Q ss_pred HHhHhhhhhHHHHHHHHHH----HHhC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 285 ATVSHEIRTPMNGVLGMLD----MLMD---TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 285 a~iSHElRTPL~~I~g~~~----lL~~---~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
++|+-||---|+-.+.++. +|.. .+..++.++.+..+....+.--.-+.++|.--|+ ....-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 4567777776666666554 3432 1333455666666666655555556666655443 223346778
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecH---HHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhh
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 434 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~---~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 434 (876)
-++++++.|+. +.++.+.+++ .+|... -|+ -.+-||+.-=++||+||+...+|.|+++...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~--qlp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~---------- 510 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDY--QLPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND---------- 510 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEec--cCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC----------
Confidence 88888887765 4566666554 333322 233 3467889999999999999888888875311
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCC
Q 002821 435 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 514 (876)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 514 (876)
..+.+.|+|+|+|||+.. ..
T Consensus 511 -------------------------------------------g~~~~~VeDnG~Gi~~~~-----------------e~ 530 (574)
T COG3850 511 -------------------------------------------GQVTLTVEDNGVGIDEAA-----------------EP 530 (574)
T ss_pred -------------------------------------------CeEEEEEeeCCcCCCCcc-----------------CC
Confidence 247899999999999751 11
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002821 515 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 552 (876)
Q Consensus 515 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 552 (876)
+| --||.|-+.=++.+||.+.|++.+|+||++.++++
T Consensus 531 ~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 531 SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred CC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 23 57999999999999999999999999999999986
No 136
>PRK15029 arginine decarboxylase; Provisional
Probab=98.78 E-value=3e-08 Score=119.20 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=84.3
Q ss_pred eEEEEeCCHH--------HHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH----HHHHHHHh
Q 002821 731 KILIVDDNNV--------NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF----EATKIIRE 798 (876)
Q Consensus 731 ~ILvVdDn~~--------n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~----e~~~~IR~ 798 (876)
+||||||+.. .++.++..|+..||+|..+.++.+|++.+.....||+||+|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 69999999999999999999999999998533579999999999999998 89999996
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEcCCCC--HHhHHHHHHcCCCeeEeCCCCHHH
Q 002821 799 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFEAEQ 859 (876)
Q Consensus 799 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~--~~~~~~~~~aG~d~yl~KP~~~~~ 859 (876)
. ...+|||++|+... .......++ -+++|+-+--+..+
T Consensus 82 ~----------------------~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTAD 121 (755)
T ss_pred h----------------------CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHH
Confidence 2 24699999999886 322222222 24677777654433
No 137
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.77 E-value=3.9e-06 Score=97.61 Aligned_cols=65 Identities=28% Similarity=0.302 Sum_probs=55.0
Q ss_pred eEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCc-ccccHHHHHHHHHHcCCE--EEEEEeCCCcEEEEEEEEeC
Q 002821 479 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG-TGIGLSISKYLVGRMKGE--IGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 479 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~G-tGLGLsI~k~lv~~mgG~--I~v~S~~g~GstF~~~lp~~ 554 (876)
.+.++|.|+|+||+++....+.+. .++ .|+||+=+++.++.+-|. +.++|.+++||+..+.+|..
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 578999999999999888765432 122 599999999999999998 58999999999999999864
No 138
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=4.4e-08 Score=103.82 Aligned_cols=112 Identities=29% Similarity=0.370 Sum_probs=93.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcC-CE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g-~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+|+++||++..+.-+..++.... ++ +..+.++.++++.+. ...+|++|+||+||.|+|+++.+.||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ-GLRPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh-ccCCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 79999999999999999998422 22 336889999999885 45899999999999999999999999742
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
+..+|+++|++. +....+++..+-||+.||++.+.|...+.+.
T Consensus 74 --------------~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 74 --------------PRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred --------------CCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 357899999874 4555666788899999999999999999753
No 139
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.59 E-value=2.2e-07 Score=76.27 Aligned_cols=65 Identities=45% Similarity=0.782 Sum_probs=57.6
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002821 280 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 344 (876)
Q Consensus 280 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g 344 (876)
+.+|++.++|||||||++|.++++++.+...++...++++.+..+++++..++++++++++.+.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 66 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46799999999999999999999998876666666889999999999999999999999997653
No 140
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.59 E-value=1.1e-05 Score=89.16 Aligned_cols=129 Identities=22% Similarity=0.342 Sum_probs=91.7
Q ss_pred EeecHHHHHHHHHHHHHhHhhh--cCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcc-----CCCeEEEEEEEe
Q 002821 351 VSFNLRAILDDVLSLFSGKSQD--KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-----EKGHIFVTVYLV 423 (876)
Q Consensus 351 ~~~~L~~ll~~v~~~~~~~a~~--k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-----~~G~I~v~v~~~ 423 (876)
..+.|.+-++.+-.-++-+-.. ..+++.+++++.+-.. .=|. -++.-|+.|||||. +.|.|.|+|...
T Consensus 415 ~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~--~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~~ 489 (557)
T COG3275 415 EIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV--QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEKE 489 (557)
T ss_pred eEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc--cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEEe
Confidence 3467888888776665543222 2345555555443211 0122 25667899999995 247788877543
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccc
Q 002821 424 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 503 (876)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 503 (876)
+ ..+++.|+|+|.||+++
T Consensus 490 d-----------------------------------------------------~~l~i~VeDng~li~p~--------- 507 (557)
T COG3275 490 D-----------------------------------------------------ADLRIEVEDNGGLIQPD--------- 507 (557)
T ss_pred C-----------------------------------------------------CeEEEEEecCCCCcCCC---------
Confidence 2 13789999999999886
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCC---EEEEEEeCCCcEEEEEEEEeCC
Q 002821 504 MQVGPSISRTHGGTGIGLSISKYLVGRMKG---EIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 504 ~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG---~I~v~S~~g~GstF~~~lp~~~ 555 (876)
...|+|+||+.+++=++.+=| -++++|.+..||+++|.+|+..
T Consensus 508 ---------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 ---------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred ---------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 225899999999999988888 7999999999999999999854
No 141
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.58 E-value=6.1e-07 Score=88.86 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhccCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCC
Q 002821 393 PGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 468 (876)
Q Consensus 393 ~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (876)
...+.-++..++.||++|+.. |.|.|.+...+
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~-------------------------------------------- 75 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYE-------------------------------------------- 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeC--------------------------------------------
Confidence 345888999999999999743 56666654321
Q ss_pred CCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEE
Q 002821 469 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 548 (876)
Q Consensus 469 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~ 548 (876)
..+.|.|.|+|.|++++.....|.|+...++.. ...+.|+||.|+++|++ ++.+.+ +.|++++
T Consensus 76 ---------~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~ 138 (159)
T TIGR01924 76 ---------DRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVA 138 (159)
T ss_pred ---------CEEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEE
Confidence 247899999999999999888888876543322 23467999999999998 677776 4678888
Q ss_pred EEEEeC
Q 002821 549 FTAVFG 554 (876)
Q Consensus 549 ~~lp~~ 554 (876)
++..+.
T Consensus 139 l~k~~~ 144 (159)
T TIGR01924 139 MTKYLN 144 (159)
T ss_pred EEEEEc
Confidence 876553
No 142
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.51 E-value=4.7e-05 Score=80.36 Aligned_cols=183 Identities=18% Similarity=0.231 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeE---eecHHHHHHHHHHHHH
Q 002821 291 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV---SFNLRAILDDVLSLFS 367 (876)
Q Consensus 291 lRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~---~~~L~~ll~~v~~~~~ 367 (876)
|..-|-+..-.++++...-.++.+ --...+.+++.+|..-|+++-.+|.- |.+. ..-|..-++-.++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH~------LRP~~LDDLGL~aALe~L~~~f~ 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISHD------LRPRALDDLGLTAALEALLEDFK 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhccc------cChhhhhhhhHHHHHHHHHHHhh
Confidence 445566777777877654333222 12255677778888888888666531 2221 2234445555555555
Q ss_pred hHhhhcCCEEEEEeCCCCCceEee-cHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCC
Q 002821 368 GKSQDKGVELAVYISDRVPETLIG-DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 446 (876)
Q Consensus 368 ~~a~~k~i~l~~~~~~~~p~~v~~-D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (876)
...|+++.+..+. .|..+.- -...|.+|...-++|-=+|+..-.|.|.. ..
T Consensus 335 ---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill--~~---------------------- 386 (459)
T COG4564 335 ---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILL--QQ---------------------- 386 (459)
T ss_pred ---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEe--cc----------------------
Confidence 5678888887653 3443332 34678889999999988888444444433 11
Q ss_pred CccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHH
Q 002821 447 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 526 (876)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~ 526 (876)
....++..|.|+|+|.+.+... ..-.||||--.+.
T Consensus 387 -----------------------------~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrE 421 (459)
T COG4564 387 -----------------------------MGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRE 421 (459)
T ss_pred -----------------------------CCcceEEEEecCCCCccchhhc----------------cCccccccccHHH
Confidence 1234789999999999865431 1126999999999
Q ss_pred HHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 527 LVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 527 lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
=+...||++.++|.|. ||..++.+|..
T Consensus 422 Rma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459)
T COG4564 422 RMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459)
T ss_pred HHHHhCceEEEEecCC-CcEEEEEecch
Confidence 9999999999999998 99999999874
No 143
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.43 E-value=1.3e-05 Score=86.37 Aligned_cols=148 Identities=22% Similarity=0.323 Sum_probs=109.0
Q ss_pred eecHHHHHHHHHHHHHhHhhhcCC---EEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcc-C----CCe----EEEE
Q 002821 352 SFNLRAILDDVLSLFSGKSQDKGV---ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-E----KGH----IFVT 419 (876)
Q Consensus 352 ~~~L~~ll~~v~~~~~~~a~~k~i---~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-~----~G~----I~v~ 419 (876)
.+++.++++++.+..+..+..+=+ ++.+.-+...... ..=|.-|..++.-|+.||+++| + .|. |.|.
T Consensus 215 ~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~-vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~ 293 (414)
T KOG0787|consen 215 RCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFT-VYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVT 293 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCc-cccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 578999999999888877776543 3443333333322 1358899999999999999998 2 233 4444
Q ss_pred EEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhh
Q 002821 420 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 499 (876)
Q Consensus 420 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~i 499 (876)
|... ...+.|.|+|.|-||+.+..+++
T Consensus 294 V~~g-----------------------------------------------------deDl~ikISDrGGGV~~~~~drl 320 (414)
T KOG0787|consen 294 VAKG-----------------------------------------------------DEDLLIKISDRGGGVPHRDIDRL 320 (414)
T ss_pred EecC-----------------------------------------------------CcceEEEEecCCCCcChhHHHHH
Confidence 3211 11367889999999999999999
Q ss_pred cccccccCCC------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 500 FTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 500 F~pF~q~~~s------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
|.=-|...+. ....-.|.|-||.|||...+..||++.+.|-.|-||-..+.+..
T Consensus 321 f~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 321 FSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred HhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEecc
Confidence 9765543322 12233699999999999999999999999999999999998743
No 144
>PF14501 HATPase_c_5: GHKL domain
Probab=98.35 E-value=7.3e-06 Score=74.46 Aligned_cols=94 Identities=26% Similarity=0.343 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002821 392 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 467 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (876)
|+.-|-.+|.||++||++++.. ..|.+.++..
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~-------------------------------------------- 37 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREE-------------------------------------------- 37 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--------------------------------------------
Confidence 4566889999999999998732 3444444321
Q ss_pred CCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002821 468 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 547 (876)
Q Consensus 468 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 547 (876)
...+.|.|+.+-.+ +. +.++ +.+...++.|+||.+++++++.++|.+.++++.+ .|
T Consensus 38 ---------~~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f 93 (100)
T PF14501_consen 38 ---------NGFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IF 93 (100)
T ss_pred ---------CCEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EE
Confidence 12477889988544 11 2222 1234567899999999999999999999887754 67
Q ss_pred EEEEEe
Q 002821 548 TFTAVF 553 (876)
Q Consensus 548 ~~~lp~ 553 (876)
++++-+
T Consensus 94 ~~~i~i 99 (100)
T PF14501_consen 94 TVKIVI 99 (100)
T ss_pred EEEEEE
Confidence 766544
No 145
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.31 E-value=5e-06 Score=105.57 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=98.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 002821 726 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 726 ~~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 805 (876)
.+.+++|||+||++.++..+..+|...|+.+..+.++.+ + ....||++++|+.||.+++.+..........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-~~~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-PEAHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-ccCCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 356789999999999999999999999999999999888 2 2457999999999999888776655543211
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
....++|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 12356888899889999999999999999999999999999987654
No 146
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.15 E-value=8.9e-06 Score=66.01 Aligned_cols=62 Identities=40% Similarity=0.723 Sum_probs=53.0
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 279 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAK 340 (876)
Q Consensus 279 aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~L~~lindlLd~sk 340 (876)
.+.++.+.++|||||||+++.++++.+..... .+...++++.+..++.++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999999998876433 456678889999999999999999998874
No 147
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.10 E-value=3.2e-06 Score=95.14 Aligned_cols=91 Identities=26% Similarity=0.442 Sum_probs=80.1
Q ss_pred CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCC
Q 002821 754 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 833 (876)
Q Consensus 754 ~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~ 833 (876)
++|..+..|.+|+..+. .+.+|.++.|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~-~~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHh-cCCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 45667999999999885 68999999999999999999999999742 238899999
Q ss_pred CCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 834 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 834 ~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+.....+.+++|++++++||.+...+...+..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 999999999999999999999999999888776543
No 148
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.08 E-value=2.4e-05 Score=80.40 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=72.4
Q ss_pred EeecCCcceEEEeccCCChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeee
Q 002821 74 IFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 153 (876)
Q Consensus 74 ~~~~~~~~~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~ 153 (876)
.||.+.|..++|+|+..+|.-+.++.+||+.++.++|+|+.|+| ++-|++..+|++-.. +. -+.++|+|.+
T Consensus 119 ~yPl~~neaa~gLDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~gp--~~------~dRFwGvVs~ 189 (297)
T COG3452 119 VYPLPGNEAAIGLDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMGP--PG------GDRFWGVVSG 189 (297)
T ss_pred EeecCCChhhcCcchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeCC--CC------CCccceEEEE
Confidence 78999999999999999999999999999999999999999997 456999999998642 11 2457899999
Q ss_pred eeehHHHHHHH
Q 002821 154 IFDIESLVEKL 164 (876)
Q Consensus 154 ~~~v~~l~~~~ 164 (876)
+||++.|.+..
T Consensus 190 V~dvDqL~~s~ 200 (297)
T COG3452 190 VFDVDQLYESV 200 (297)
T ss_pred EEEHHHHHHHh
Confidence 99999988875
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=3.1e-05 Score=85.52 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCC
Q 002821 394 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 473 (876)
Q Consensus 394 ~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (876)
..+.+++.|||.||+++.. ..|.|.+.. .
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~------------------------------------------------ 49 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--G------------------------------------------------ 49 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--C------------------------------------------------
Confidence 3578999999999999864 456555421 0
Q ss_pred CcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC------CCCCCcccccHHHHHHHHHHcCCEEEEEEeC--CCcE
Q 002821 474 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIP--NIGS 545 (876)
Q Consensus 474 ~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~------~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~--g~Gs 545 (876)
....|.|.|+|.||++++++++|++|++.+... ...+|--|.||+-...+ +.+.+.|.. +.+.
T Consensus 50 ----~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~ 120 (312)
T TIGR00585 50 ----GLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGL 120 (312)
T ss_pred ----CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcc
Confidence 123599999999999999999999999765432 12345568888644433 378999875 4455
Q ss_pred EEEEE
Q 002821 546 TFTFT 550 (876)
Q Consensus 546 tF~~~ 550 (876)
.+.+.
T Consensus 121 ~~~~~ 125 (312)
T TIGR00585 121 AWQAL 125 (312)
T ss_pred eEEEE
Confidence 54443
No 150
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.80 E-value=6.9e-05 Score=82.57 Aligned_cols=111 Identities=22% Similarity=0.321 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHHHHHhhccCCCeE----EEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002821 392 DPGRFRQIITNLMGNSIKFTEKGHI----FVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 467 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT~~G~I----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (876)
-..-|-|++.-|+.||+.+|+.-+| .|.+...
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-------------------------------------------- 68 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-------------------------------------------- 68 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec--------------------------------------------
Confidence 3456999999999999999976544 3433221
Q ss_pred CCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCC-CCC-CCCcccccHHHHHHHHHHcCCE-EEEEEeCCC-
Q 002821 468 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS-ISR-THGGTGIGLSISKYLVGRMKGE-IGFVSIPNI- 543 (876)
Q Consensus 468 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s-~~~-~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~g~- 543 (876)
+..++.+.|+|||+|||+++.+++|-.+.-.+.- ..+ ..|--|||.+-|=-..++.-|+ +.|.|..+.
T Consensus 69 --------~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 69 --------GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred --------CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCC
Confidence 1235789999999999999999999876532211 111 2255799999999999998887 777776654
Q ss_pred cEEEEEEEEeC
Q 002821 544 GSTFTFTAVFG 554 (876)
Q Consensus 544 GstF~~~lp~~ 554 (876)
++...+.+-..
T Consensus 141 ~~~~~~~l~id 151 (538)
T COG1389 141 GTAYEYELKID 151 (538)
T ss_pred cceEEEEEEec
Confidence 77777776554
No 151
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.76 E-value=0.00024 Score=67.17 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHHHHhhccCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002821 392 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 467 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (876)
+...+.-++.-++.||++|+.. +.|.|.+...
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~-------------------------------------------- 63 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD-------------------------------------------- 63 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--------------------------------------------
Confidence 3457889999999999999865 3455544321
Q ss_pred CCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002821 468 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 547 (876)
Q Consensus 468 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 547 (876)
...+.|.|.|+|.|+++.....-... ........|+||.|++++++.+ .+ + .+.|++.
T Consensus 64 ---------~~~l~i~v~D~G~~~d~~~~~~~~~~-------~~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v 121 (125)
T PF13581_consen 64 ---------PDRLRISVRDNGPGFDPEQLPQPDPW-------EPDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTV 121 (125)
T ss_pred ---------CCEEEEEEEECCCCCChhhccCcccc-------cCCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEE
Confidence 12488999999999988755432211 0023456799999999999876 45 4 7889998
Q ss_pred EEE
Q 002821 548 TFT 550 (876)
Q Consensus 548 ~~~ 550 (876)
+++
T Consensus 122 ~l~ 124 (125)
T PF13581_consen 122 TLR 124 (125)
T ss_pred EEE
Confidence 874
No 152
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.95 E-value=0.0043 Score=46.35 Aligned_cols=54 Identities=37% Similarity=0.479 Sum_probs=48.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 785 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP 785 (876)
++++++|++..+..+...+...|+.+..+.++.++...+. .+.+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6999999999999999999999999999999999988774 45799999998765
No 153
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.84 E-value=0.0099 Score=57.81 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHHHHhhccCC-----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002821 392 DPGRFRQIITNLMGNSIKFTEK-----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 466 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (876)
|-.+++-++.-++.||++|..+ |.|.|.+...+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 7788999999999999999865 77877765432
Q ss_pred CCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCc
Q 002821 467 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 544 (876)
Q Consensus 467 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~G 544 (876)
..+.+.|.|.|+||.+ .++.+.|-+.. ...-..-|+||.+.++++. ++.+++.++.+
T Consensus 75 -----------~~~~i~i~D~G~~~~~--~~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 75 -----------GKLEIRIWDQGPGIED--LEESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred -----------CeEEEEEEeCCCCCCC--HHHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 2378999999988754 34455554221 1111233899999998774 67888666553
No 154
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.80 E-value=0.0063 Score=73.36 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002821 395 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 474 (876)
Q Consensus 395 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (876)
++..++..||.||+.+. ...|.|.+.-
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~~---------------------------------------------------- 48 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIEE---------------------------------------------------- 48 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEEe----------------------------------------------------
Confidence 57789999999999975 4456665521
Q ss_pred cCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC------CCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 475 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 475 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~------~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.....|+|.|+|.||+++++..+|.++...+-+.- ...|=-|.||+-...+ +.+.+.|..+
T Consensus 49 --~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~~ 115 (617)
T PRK00095 49 --GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRTA 115 (617)
T ss_pred --CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEecC
Confidence 01246999999999999999999999875433211 2234456777644443 3677777653
No 155
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.65 E-value=0.015 Score=53.72 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=74.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEE-EEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC-FMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dli-lmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
||||||||..-+.-+..+|.=.|+.+..+.+.+-..... ...++.+ ++...++ ...+.++.+-+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~--~~~~~~~~v~~g~~~--~~~~~l~~l~~~---------- 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADW--SSPWEACAVILGSCS--KLAELLKELLKW---------- 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhh--hcCCcEEEEEecCch--hHHHHHHHHHhh----------
Confidence 699999999999999999999999999888765422222 2345555 4444443 334445555432
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
.+++|++.+......... ..+-+-|.-|++..+|...+++.
T Consensus 67 ------------~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 67 ------------APHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ------------CCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 468999999877665111 11566799999999999999875
No 156
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=96.51 E-value=0.019 Score=52.41 Aligned_cols=110 Identities=15% Similarity=0.267 Sum_probs=79.3
Q ss_pred EEEECCchhhHHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 584 ALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 584 ~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
++++|+++..+......++..|+ .+..+++..+++..+.... ++++++|..+... ....++..+++.. ...+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~---~~~~~~~~i~~~~--~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDG---DGLELLEQIRQIN--PSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSS---BHHHHHHHHHHHT--TTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccc---ccccccccccccc--cccc
Confidence 58999999999999999999999 9999999999999886544 8899998765542 2334556666654 3455
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHH
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 701 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l 701 (876)
++++............. ..+...++.||+....+.+.+
T Consensus 74 ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 74 IIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHhh
Confidence 55555433322222222 236778999999999887765
No 157
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.27 E-value=0.041 Score=57.92 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=84.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
+++++||+++.-......+|+..|++|..+.+..+++..+... ++.+++|..+...+ ...++..++.. ....+
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~d---G~~~~~~iR~~-~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLD---GLELCRRLRAK-KGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCC---HHHHHHHHHhh-cCCCC
Confidence 4789999999999999999999999999999999999887765 89999997665433 33456667755 33333
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
++++++...+... ....-..|...++.||+....|.+-++..+..
T Consensus 74 PIi~Lta~~~~~d-~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 74 PIIVLTARDDEED-RVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred cEEEEECCCcHHH-HHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 3333332211111 11111225668999999999999988888754
No 158
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.06 E-value=0.0052 Score=59.22 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=42.1
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCCC--CCCCCCccccc--HHHHHHHHHHcCCEEEEEEeCC-CcEEEEEEEE
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIG--LSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 552 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s--~~~~~~GtGLG--LsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp 552 (876)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|... ...+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 58999999999999999977655433221 12245667888 4433 4678899999864 3345555544
No 159
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.79 E-value=0.018 Score=69.30 Aligned_cols=96 Identities=30% Similarity=0.479 Sum_probs=63.6
Q ss_pred CceEee--cHHHHHHHHHHHHHHHhhccCCC---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccc
Q 002821 386 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 460 (876)
Q Consensus 386 p~~v~~--D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (876)
|.+.+| +...+.+++.-||.||+.....| .|.|.++-
T Consensus 26 P~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~-------------------------------------- 67 (631)
T PRK05559 26 PGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA-------------------------------------- 67 (631)
T ss_pred CCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeC--------------------------------------
Confidence 444443 67789999999999999975444 45555421
Q ss_pred ccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhh--------hcccccccC---CCCCCCCCc-ccccHHHHHHHH
Q 002821 461 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLV 528 (876)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv 528 (876)
+ -.|+|.|+|.|||.+..+. +|....... ....+..+| .|.||+.+..+.
T Consensus 68 ---------------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS 129 (631)
T PRK05559 68 ---------------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALS 129 (631)
T ss_pred ---------------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhhe
Confidence 0 1489999999999998888 887743221 111122344 799999988886
Q ss_pred HHcCCEEEEEEeC
Q 002821 529 GRMKGEIGFVSIP 541 (876)
Q Consensus 529 ~~mgG~I~v~S~~ 541 (876)
+. +.|++..
T Consensus 130 ~~----l~V~s~r 138 (631)
T PRK05559 130 SR----LEVEVKR 138 (631)
T ss_pred ee----EEEEEEe
Confidence 54 4555544
No 160
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=94.98 E-value=0.17 Score=58.14 Aligned_cols=178 Identities=14% Similarity=0.179 Sum_probs=110.2
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.++|+|||++.-+.+....|+..|+.|..+.+..+++..+... .+++++.|..+...+ ...++..+++.. ..-|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~---Gl~ll~~i~~~~-~~~p 78 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMD---GLELLKEIKSRD-PDLP 78 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCc---hHHHHHHHHhhC-CCCC
Confidence 4699999999999999999999999999999999999999887 588888887665332 233455555543 1123
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCC----------CCC-CC-cchh------
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR----------NWE-LP-SMSL------ 723 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~----------~~~-~~-~~~~------ 723 (876)
.+++...+.-.......+. +...++.||+....+...+.+++......... ... .. +...
T Consensus 79 VI~~Tg~g~i~~AV~A~k~--GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~ 156 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRL--GAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRL 156 (464)
T ss_pred EEEEeCCCCHHHHHHHHhc--CcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHH
Confidence 3333222211111111222 45578999999999999999988642211000 000 00 0000
Q ss_pred --hccCCCCeEEEEeCCHHHHHHHHHHHhHcCC-------EEEEEcCHHHHHH
Q 002821 724 --RHLLLGRKILIVDDNNVNLKVAAAGLKRYGA-------AVVCVERGKKATE 767 (876)
Q Consensus 724 --~~~~~~~~ILvVdDn~~n~~vl~~~L~~~g~-------~v~~a~~g~eA~~ 767 (876)
+-....-.|||.-..-.=.+++..++.+.+- .+-|+.=..+-++
T Consensus 157 i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~E 209 (464)
T COG2204 157 IAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLE 209 (464)
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHH
Confidence 0012334688888877777777777776542 3445554455444
No 161
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.68 E-value=0.062 Score=64.86 Aligned_cols=88 Identities=28% Similarity=0.454 Sum_probs=55.4
Q ss_pred CceEee--cHHHHHHHHHHHHHHHhhccCCC---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccc
Q 002821 386 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 460 (876)
Q Consensus 386 p~~v~~--D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (876)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.++-
T Consensus 26 PgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~-------------------------------------- 67 (638)
T PRK05644 26 PGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE-------------------------------------- 67 (638)
T ss_pred CCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC--------------------------------------
Confidence 444444 66789999999999999844344 56555421
Q ss_pred ccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHh--------hhccccccc---CCCCCCCC-CcccccHHHHHHHH
Q 002821 461 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTH-GGTGIGLSISKYLV 528 (876)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~~~-~GtGLGLsI~k~lv 528 (876)
+. .|+|.|+|.|||.+..+ -||.-.... +....+.. |--|.||+.+..+-
T Consensus 68 ---------------~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS 129 (638)
T PRK05644 68 ---------------DG---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALS 129 (638)
T ss_pred ---------------CC---cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhhee
Confidence 00 48999999999987433 244333111 11212222 33799999988887
Q ss_pred H
Q 002821 529 G 529 (876)
Q Consensus 529 ~ 529 (876)
+
T Consensus 130 ~ 130 (638)
T PRK05644 130 T 130 (638)
T ss_pred c
Confidence 6
No 162
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.65 E-value=0.31 Score=62.08 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC-
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG- 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 658 (876)
.++++|++|+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+. ......++.....
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G---~~~~~~ir~~~~~~ 763 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDG---LETTQLWRDDPNNL 763 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhchhhc
Confidence 45789999999999999999999999999999999999988754 45789999987665442 2344445443211
Q ss_pred -CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 -FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 -~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++++.......... ....+...++.||+....+...+...+.
T Consensus 764 ~~~~pii~lt~~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 764 DPDCMIVALTANAAPEEIHR-CKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCcEEEEeCCCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 2233444433222211111 1223677899999999999998887653
No 163
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.56 E-value=0.87 Score=42.83 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=73.0
Q ss_pred eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhccccccccccc
Q 002821 736 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 736 dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~~~~~~~~g 810 (876)
|.+..=...+..+|+..||+|.... ..++.++.+. ...+|+|.+-..|+..-. -++++++|+..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~---------- 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLRELG---------- 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhcC----------
Confidence 6666777888999999999998754 3556666664 467999999887753322 22333444310
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
...++ +++-+....+..++..++|+|+|+..=-+.++...-++
T Consensus 79 -----------~~~i~-i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 -----------AGDIL-VVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred -----------CCCCE-EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 11344 45555566777888999999999998888877765543
No 164
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.55 E-value=0.4 Score=60.03 Aligned_cols=193 Identities=12% Similarity=0.129 Sum_probs=113.7
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+.+++++|+++..+.+....|+.+|+.+..+++..+++..+.. ..++++++|..+...+ .......++......
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~---G~e~~~~ir~~~~~~ 598 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMT---GLDIARELRERYPRE 598 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhccccC
Confidence 46789999999999999999999999999999999999988763 4578999987765443 233445555443222
Q ss_pred C-ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCC
Q 002821 660 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 738 (876)
Q Consensus 660 ~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn 738 (876)
. +.++++....... ... ....+...++.||+....+...+.+.+............ .. ... ..++
T Consensus 599 ~~~~ii~~ta~~~~~-~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~~~~~~~~-~~------~~~-----~~~~ 664 (779)
T PRK11091 599 DLPPLVALTANVLKD-KKE-YLDAGMDDVLSKPLSVPALTAMIKKFWDTQDDEESTVTT-EE------SSK-----ANEA 664 (779)
T ss_pred CCCcEEEEECCchHh-HHH-HHHCCCCEEEECCCCHHHHHHHHHHHhcccccccccccc-cc------ccc-----cccc
Confidence 2 2444443322211 111 122366789999999999999999887532211100000 00 000 0345
Q ss_pred HHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHH
Q 002821 739 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 796 (876)
Q Consensus 739 ~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~I 796 (876)
..+...+..++..+|... ..+++..+....+-++-.++..++..|.-++.+..
T Consensus 665 ~l~~~~l~~~~~~~g~~~-----~~~~l~~~~~~~~~~~~~l~~~l~~~d~~~~~~~a 717 (779)
T PRK11091 665 LLDIPMLEQYVELVGPKL-----ITDSLAVFEKMMPGYLSVLDSNLTARDQKGIVEEA 717 (779)
T ss_pred ccCHHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHH
Confidence 556666777776665421 23444443221111222234455667766654433
No 165
>PRK14083 HSP90 family protein; Provisional
Probab=94.52 E-value=0.025 Score=67.49 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=34.7
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccC-------CCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVG-------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 541 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~-------~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 541 (876)
.|.|+|||+||+.+...+.|-..-... .......|..|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 589999999999999888763222110 01112346788887655333 3445565554
No 166
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=94.42 E-value=0.049 Score=65.52 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=33.6
Q ss_pred EEEEEeeCCCCChhh--------Hhhhc-cccccc--CCCCCCCCCc-ccccHHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEA--------QSRIF-TPFMQV--GPSISRTHGG-TGIGLSISKYLVGR 530 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~--------~~~iF-~pF~q~--~~s~~~~~~G-tGLGLsI~k~lv~~ 530 (876)
.|+|.|+|.|||.+. .+-+| .+.... +....+..+| .|.||+.+..+.+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 489999999999988 77777 332211 1111222344 79999999988874
No 167
>PLN03029 type-a response regulator protein; Provisional
Probab=94.26 E-value=0.33 Score=50.81 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=78.2
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCC------------------CcceEEEeeccccccC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS------------------KIINMILVEQEVWEKD 641 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~~~~ 641 (876)
...++|+||+++..+......|+.+|+.+..+.+..+++..+.... ..++++++|..+...+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3578999999999999999999999999999999999998875321 2467888887665543
Q ss_pred cchhHHHHHHHhhcCCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 002821 642 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 703 (876)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 703 (876)
. ...+..++.........++++............ ...+...++.||+....+......
T Consensus 87 G---~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~a-l~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 87 G---YDLLKKIKESSSLRNIPVVIMSSENVPSRITRC-LEEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred H---HHHHHHHHhccccCCCcEEEEeCCCCHHHHHHH-HHhCchheEECCCCHHHHHHHHHH
Confidence 2 334455554432223334444332221111111 122566899999998887655443
No 168
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.21 E-value=0.091 Score=63.85 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=23.7
Q ss_pred CceEee--cHHHHHHHHHHHHHHHhhccCCC---eEEEEE
Q 002821 386 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTV 420 (876)
Q Consensus 386 p~~v~~--D~~rl~qIl~NLl~NAiKfT~~G---~I~v~v 420 (876)
|.+.+| |+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 19 P~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 19 PGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 444443 56779999999999999833333 555554
No 169
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=93.79 E-value=0.35 Score=62.01 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=85.8
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+.+++++|+++..+.+....|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++......
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~---g~~~~~~ir~~~~~~ 775 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGD---GVTLLQQLRAIYGAK 775 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCC---HHHHHHHHHhCcccc
Confidence 34589999999999999999999999999999999999998865 5689999998765543 233445555543322
Q ss_pred C-ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
. .+++++........... ....+...++.||+....+...+...+.
T Consensus 776 ~~~pii~lta~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 776 NEVKFIAFSAHVFNEDVAQ-YLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCeEEEEECCCCHHHHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 2 34444433222211111 1223677899999999999999988774
No 170
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.75 E-value=1.4 Score=42.40 Aligned_cols=118 Identities=10% Similarity=0.100 Sum_probs=84.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhh
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREM 799 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~md--G~e~~~~IR~~ 799 (876)
+++||+. |.+..-..++..+|+..||+|+... ..++-++.+. .+.+|+|.+-..|.... --++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4688888 8999999999999999999999754 3455566654 56899999998887432 23344445432
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEcCCC------CHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 800 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
. ..+++|++ -+.. ..++..++.+.|++......-+.++...-+++++.
T Consensus 82 ~---------------------~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 G---------------------LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred C---------------------CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1 22454443 3322 34566788999999999999999999988888764
No 171
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=93.15 E-value=1.2 Score=41.44 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=77.4
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHH-HHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL-QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
.+.+++++|+++..+......++.+|..+..+.+.. +++..+.... .++++++|..+...+ .......+++. ..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~---G~~~~~~l~~~-~~ 78 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMD---GIELLRRLRAR-GP 78 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCC---HHHHHHHHHhC-CC
Confidence 467899999999999999999999999999999995 9988876543 467788888776444 34455556554 11
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHH-HHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM-LAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~-l~~~l~~~l 705 (876)
..+ ++.+............ ...+...++.||+.... +...+.+.+
T Consensus 79 ~~p-vv~~t~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 79 NIP-VILLTAYADEADRERA-LAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CCC-EEEEEcCcCHHHHHHH-HHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 223 3333332222111111 11245568999977665 555555433
No 172
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=92.76 E-value=0.62 Score=59.32 Aligned_cols=119 Identities=20% Similarity=0.300 Sum_probs=84.1
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+.+++++|+++..+.+....|+.+|+.+..+.+..+++..+.. ..++++++|..+...+. ......+++...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG---~el~~~ir~~~~- 872 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDG---YRLTQRLRQLGL- 872 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCH---HHHHHHHHhcCC-
Confidence 357899999999999999999999999999999999999988765 45889999987765442 334445554322
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
..++++++......... .....+...++.||+....+...+.+..
T Consensus 873 -~~pII~lTa~~~~~~~~-~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 873 -TLPVIGVTANALAEEKQ-RCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred -CCCEEEEECCCCHHHHH-HHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 23333333322211111 1122367789999999999998887654
No 173
>PRK05218 heat shock protein 90; Provisional
Probab=92.64 E-value=0.4 Score=57.87 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=38.1
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccC------------CCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVG------------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~------------~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|||+||+.+++..-|...-+.+ .+...-.|-.|+|+.= +=+.+-++.|.|...
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~~ 143 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRSA 143 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcCC
Confidence 489999999999999988764433211 0112234668999853 233456889998763
No 174
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=92.56 E-value=0.095 Score=63.44 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.7
Q ss_pred EEEEEeeCCCCChhhHhhhc
Q 002821 481 IVSVEDTGQGIPLEAQSRIF 500 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF 500 (876)
.+.|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866554
No 175
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=92.14 E-value=0.73 Score=58.77 Aligned_cols=120 Identities=17% Similarity=0.259 Sum_probs=82.8
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+.+++++|+++..+.+....|+.+|+.+..+.+..+++..+.. ...++++++|..+...++ ......++... .
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G---~~~~~~lr~~~--~ 753 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDG---ITLARQLAQQY--P 753 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCH---HHHHHHHHhhC--C
Confidence 46789999999999999999999999999999999999987753 245899999987665442 23344454421 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++........... ....+...++.||+....+...+.+.+.
T Consensus 754 ~~~ii~~t~~~~~~~~~~-~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 754 SLVLIGFSAHVIDETLRQ-RTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCCEEEEeCCCchhhHHH-HHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 233333333222111111 1122455789999999999999988774
No 176
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=91.83 E-value=0.82 Score=42.55 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=70.8
Q ss_pred HHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhcccccccccccccchhhhccC
Q 002821 743 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 820 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 820 (876)
.-+...|.+.|++|+.+.+-.+|+..+.....++.|++|.. ++ ....+++++||+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 45677888899999999999999999976677899999986 21 1235677777764
Q ss_pred CCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHH
Q 002821 821 SNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 860 (876)
Q Consensus 821 ~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L 860 (876)
+..+||.+++.....+..-...-.-+++|+-..-+-.++
T Consensus 65 -~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 65 -NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 457999999987666666656667788999887554443
No 177
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=91.74 E-value=14 Score=41.48 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=63.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......|... |+.+. .+.+..+++..+.. ..++++++|..+...+. ..++..++....
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dg---le~l~~i~~~~~- 76 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDG---LDALEKIMRLRP- 76 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCCh---HHHHHHHHHhCC-
Confidence 368999999999999998999886 88876 78899998887654 34678888876654332 234445544332
Q ss_pred CCceEEEEecccCcc-ccCCCCCCCCCCceeccCCc
Q 002821 659 FQSKLFLLANSISSS-RANTSTDGVSIPSVIMKPLR 693 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~kp~~ 693 (876)
..++++....... ......-..+...++.||+.
T Consensus 77 --~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 --TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred --CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 2233332211110 10000112245678999984
No 178
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.49 E-value=0.5 Score=44.70 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEEEee
Q 002821 397 RQIITNLMGNSIKFTEKGHIFVTVYLVE 424 (876)
Q Consensus 397 ~qIl~NLl~NAiKfT~~G~I~v~v~~~~ 424 (876)
--+...|+.||+||...|.|.|..++..
T Consensus 65 gYl~NELiENAVKfra~geIvieasl~s 92 (184)
T COG5381 65 GYLANELIENAVKFRATGEIVIEASLYS 92 (184)
T ss_pred HHHHHHHHHhhhcccCCCcEEEEEEecc
Confidence 3466789999999999999999887643
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.46 E-value=1.9 Score=40.20 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=63.8
Q ss_pred eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhccccccccccc
Q 002821 736 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 736 dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~g 810 (876)
|.+..-..++..+|+..||+|.... ..++.++.+. ...||+|.+-..|... +..++.+.+|+.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~----------- 77 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEA----------- 77 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHc-----------
Confidence 6666778899999999999997643 3445556553 5689999998875542 334555666652
Q ss_pred ccchhhhccCCCC-CCcEEEEcCCCCHHhHHHHHHcCCCeeEeCC
Q 002821 811 EVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSKP 854 (876)
Q Consensus 811 ~~~~~~~~~~~~~-~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 854 (876)
.+ .++ |++-+.......+.+.+.|+|.|+...
T Consensus 78 -----------~~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 78 -----------GLDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred -----------CCCCCe-EEEECCCCChhHHHHHHcCCeEEECCH
Confidence 12 344 445555555555678899998887643
No 180
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=91.44 E-value=2.9 Score=52.75 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=80.6
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
++.+++++|+++.........|..+|+.+..+.+..+++..+......+++++++ +... ........++... .
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll~--~~~~---~g~~l~~~l~~~~--~ 768 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLVD--DRLL---DEEQAAAALHAAA--P 768 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEEC--CCCC---CHHHHHHHHHhhC--C
Confidence 5678999999999999999999999999999999999999887665667888872 2111 1222334444321 2
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
...++++............. ..+ ..++.||+....+...+...+..
T Consensus 769 ~ipIIvls~~~~~~~~~~~~-~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 769 TLPIILGGNSKTMALSPDLL-ASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred CCCEEEEeCCCchhhhhhHh-hcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 23344443332222222111 224 67899999999999999888753
No 181
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=91.06 E-value=7.3 Score=43.47 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=69.5
Q ss_pred cEEEEECCchhhHHHHHHHH-HHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHI-QRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l-~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
+++|++|+++..+......| +..|+.+. .+++..+++..+.. ..++++++|..+...+. ..++..++...
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G---~e~l~~l~~~~--- 72 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDG---VEATRRIMAER--- 72 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCH---HHHHHHHHHHC---
Confidence 37899999999998888888 57788875 68899999888764 45788888876654332 23344444321
Q ss_pred CceEEEEecccCccc-cCCCCCCCCCCceeccCC---------chHHHHHHHHHHh
Q 002821 660 QSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPL---------RSSMLAASLQRAM 705 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~---------~~~~l~~~l~~~l 705 (876)
...++++........ .....-..+...++.||. ....+...++...
T Consensus 73 ~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 73 PCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 123333333221111 000011124567899999 4445555555544
No 182
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=90.85 E-value=2.6 Score=43.01 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=77.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++.+++|..+...+ .......++........
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~---g~~~~~~l~~~~~~~~~ 77 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTS---GIELCRRLRRRPETRAI 77 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCc---HHHHHHHHHccccCCCC
Confidence 5789999999999888999999999999999999888876543 468888887654332 22344455443222233
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++........... .-..+...++.||+....+...+...+.
T Consensus 78 ~ii~ls~~~~~~~~~~-~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 78 PIIMLTARGEEEDRVR-GLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CEEEEecCCCHHHHHH-HHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 3444433222111111 1122556799999999999888887764
No 183
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=90.64 E-value=2.5 Score=43.65 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=78.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++++++|..+...+ .......+++.......
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS---GIQFIKHLKRESMTRDI 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhccccCCC
Confidence 578999999999988899999999999999999998887654 3468888887654432 22344455543222233
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... -..+...++.||+....+...+...+.
T Consensus 78 pvi~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 78 PVVMLTARGEEEDRVRG-LETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CEEEEECCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 34444332221111111 122566899999999999888887664
No 184
>PTZ00130 heat shock protein 90; Provisional
Probab=90.61 E-value=0.34 Score=59.09 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=29.2
Q ss_pred EEEEEeeCCCCChhhHhhhccc--------ccc---cCCCCCCCCCcccccHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTP--------FMQ---VGPSISRTHGGTGIGLSISKYLV 528 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~p--------F~q---~~~s~~~~~~GtGLGLsI~k~lv 528 (876)
.|+|+|||+||+.+.+..-+-. |.+ .......-.|-.|+|++-|--+.
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 5789999999999986543311 211 00111234577899998764443
No 185
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=90.59 E-value=1.7 Score=39.98 Aligned_cols=117 Identities=17% Similarity=0.299 Sum_probs=82.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH--HHHHhhcccc
Q 002821 726 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT--KIIREMEHNF 803 (876)
Q Consensus 726 ~~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~--~~IR~~~~~~ 803 (876)
.+.|++++.||-|.........+|...|.+|+.-..-. .+ .++.||++++.+-.+-..-..+- +-.|..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---- 78 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----AL-PPAHYDMMLLGVAVTFRENLTMQHERLAKAL---- 78 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----cc-ChhhhceeeecccccccCCchHHHHHHHHHH----
Confidence 46789999999999999999999999999998754433 23 45679999999876654433221 111211
Q ss_pred cccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHH-HHHhhCC
Q 002821 804 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR-EVSRFFP 869 (876)
Q Consensus 804 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~-~l~~~~~ 869 (876)
+..+--|+++-..+ ....++..+-|+-+.|.||++...|.. .+..+-.
T Consensus 79 -----------------~mtd~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~~rLlptllae~~~ 127 (140)
T COG4999 79 -----------------SMTDFVILALPSHA-QVNAEQLKQDGAGACLLKPLSSTRLLPTLLAEFCH 127 (140)
T ss_pred -----------------hhhcceEEecCcHH-HHhHHHHhhcchHhHhhCcchhhhhHHHHHHHhhh
Confidence 11234577776543 445677888999999999999999988 5555543
No 186
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=89.59 E-value=1.8 Score=50.47 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=94.0
Q ss_pred EEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceE
Q 002821 584 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 663 (876)
Q Consensus 584 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (876)
++++|+++..+......+...|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ....+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~---g~~ll~~l~~~~--~~~~v 73 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGED---GLDLLPQIKKRH--PQLPV 73 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHHhC--CCCeE
Confidence 4789999998888899999999999999999999887754 3578888887664433 223344444421 12334
Q ss_pred EEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHH
Q 002821 664 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 743 (876)
Q Consensus 664 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~ 743 (876)
+++............ ...+...++.||+....+...+...+......... . ......+....++.+++.++.
T Consensus 74 Ivlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--~-----~~~~~~~~~~~lig~s~~~~~ 145 (463)
T TIGR01818 74 IVMTAHSDLDTAVAA-YQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL--P-----ADAGEAEDSAELIGEAPAMQE 145 (463)
T ss_pred EEEeCCCCHHHHHHH-HHcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh--h-----hhhhccccccceeecCHHHHH
Confidence 444332221111111 12245678999999999988887765421110000 0 000001123458889999888
Q ss_pred HHHHHHhHcC
Q 002821 744 VAAAGLKRYG 753 (876)
Q Consensus 744 vl~~~L~~~g 753 (876)
++..+.+..+
T Consensus 146 v~~~i~~~a~ 155 (463)
T TIGR01818 146 VFRAIGRLSR 155 (463)
T ss_pred HHHHHHHHhC
Confidence 8877766443
No 187
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=89.47 E-value=3.3 Score=42.64 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=76.6
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++|+++..+......|...|+.+..+.+..+++..+.. .++.+++|..+...+ .......++.... .+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~---g~~~~~~l~~~~~---~~ 73 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKN---GIDTLKELRQTHQ---TP 73 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCc---HHHHHHHHHhcCC---Cc
Confidence 68999999999999999999999999999999998887642 478888887654332 2334445554322 33
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++........... ....+...++.||+....+...+...+.
T Consensus 74 ii~lt~~~~~~~~~~-~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 74 VIMLTARGSELDRVL-GLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 444433222111111 1123566899999999999988887764
No 188
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=89.40 E-value=0.4 Score=57.61 Aligned_cols=48 Identities=35% Similarity=0.540 Sum_probs=28.6
Q ss_pred EEEEEeeCCCCChhhHh--------hhccccccc---CCCCCCCC-CcccccHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTH-GGTGIGLSISKYLV 528 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~~~-~GtGLGLsI~k~lv 528 (876)
.|+|.|+|.|||.+..+ -+|...... +....+.. |--|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976433 234333211 11111222 33799999888774
No 189
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=89.04 E-value=4.2 Score=42.28 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=78.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++++++..+......|+..|+.+..+.+...++..+.. ..++++++|..+...+ .......++... ..
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~ 77 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGED---GLSICRRLRSQN--NP 77 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 4679999999999999999999999999999999888877654 4467888886654332 223444454422 22
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
..++++........... .-..+...++.||+....+.+.+...+..
T Consensus 78 ~pii~ls~~~~~~~~~~-~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 78 TPIIMLTAKGEEVDRIV-GLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CCEEEEECCCcHHHHHH-HHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 33444433222111111 11225667999999999999988877653
No 190
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=88.70 E-value=1.9 Score=47.38 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=78.9
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhh-cCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK-LGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~ 658 (876)
....+++|||.+.....++..|+..|+++..+.++..++....... ++.++.|..+..+++ ..+++.++. .+..
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg---~ev~~~lk~~~p~t 87 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDG---AEVLNKLKAMSPST 87 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccH---HHHHHHHHhcCCcc
Confidence 3467999999999999999999999999999999998887765433 888999887765543 446677776 3333
Q ss_pred CC-ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHH
Q 002821 659 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 701 (876)
Q Consensus 659 ~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l 701 (876)
.. |.+++.+-+.+..... ... .++..++.||++...+....
T Consensus 88 ~~ip~i~lT~~~d~~~~~~-~~~-~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 88 RRIPVILLTAYADSEDRQR-ALE-AGADDYLSKPISPKELVARV 129 (360)
T ss_pred cccceEEEeecCChHHHHH-HHH-hhHHHHhcCCCCHHHHHHHH
Confidence 33 3333332222222211 111 46778999999977765544
No 191
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=88.21 E-value=4.9 Score=41.36 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=76.4
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++++++..+......|...|..+..+.+..+++..+.. ..++.+++|......+ .......++... ...
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~---g~~~~~~lr~~~--~~~ 73 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVN---GWDIVRMLRSAN--KGM 73 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999998899999999999999999888876643 3467888886654332 223444454422 122
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++........... .-..+...++.||+....+...+...+.
T Consensus 74 pii~ls~~~~~~~~~~-~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 74 PILLLTALGTIEHRVK-GLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CEEEEEcCCCHHHHHH-HHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3344432222111111 1122566799999999999988887764
No 192
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=88.16 E-value=2.3 Score=51.72 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=66.0
Q ss_pred eEEEEeCCH-HH-----HHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 002821 731 KILIVDDNN-VN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 804 (876)
Q Consensus 731 ~ILvVdDn~-~n-----~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 804 (876)
+|+|||++- .+ .+.+...|++.|++|..+.+..+++.........++|++|.+-. ..++++.||+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 477776663 22 45677788889999999999999999886666788999995332 24577888863
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
+..+||+++.............-.-.++|+-
T Consensus 74 -----------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (713)
T PRK15399 74 -----------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFE 104 (713)
T ss_pred -----------------CCCCCEEEEcCccccccCChhHhhhcceeee
Confidence 3479999988754433322222233455554
No 193
>PRK11173 two-component response regulator; Provisional
Probab=88.04 E-value=4.7 Score=41.97 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=77.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...++.. . ..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~---g~~~~~~lr~~--~-~~ 75 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKN---GLLLARELREQ--A-NV 75 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCC---HHHHHHHHhcC--C-CC
Confidence 5799999999999999999999999999999999998877543 578888887654322 23344455442 1 22
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++.......... ..-..+...++.||+....+...+...+.
T Consensus 76 pii~lt~~~~~~~~~-~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 76 ALMFLTGRDNEVDKI-LGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred CEEEEECCCCHHHHH-HHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 333333322211111 11123566899999999998887776664
No 194
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=87.61 E-value=5.4 Score=40.62 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=76.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ .......++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~---g~~~~~~l~~~~--~~~ 73 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDED---GLHLLRRWRQKK--YTL 73 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 3689999999999999999999999999999999888776543 467888886654332 223444444322 222
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++.......... ..-..+...++.||+....+...+...+.
T Consensus 74 pii~ls~~~~~~~~~-~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 74 PVLILTARDTLEDRV-AGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred cEEEEECCCCHHHHH-HHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 333333222211111 11122556799999999999888877664
No 195
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.53 E-value=2.6 Score=46.79 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=58.8
Q ss_pred CCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcC
Q 002821 753 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA 832 (876)
Q Consensus 753 g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa 832 (876)
|..++.+.+..++-..+ ..-.+|++|..| . ..-++... ..+..+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----~--~~~~~~~~---------------------p~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW---ARAPLVLVDADM-----A--EACAAAGL---------------------PRRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhcc---ccCCeEEECchh-----h--hHHHhccC---------------------CCCCCEEEEeC
Confidence 55677777766654443 346899999754 1 12222211 12334554444
Q ss_pred -CCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 833 -DVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 833 -~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+.+....++.+|+.+|+.+|++..+|...+.+..
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 556889999999999999999999999999999874
No 196
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=87.20 E-value=7.2 Score=39.61 Aligned_cols=117 Identities=14% Similarity=0.188 Sum_probs=76.2
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++++++|..+...+ ...+...++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~i~~~~--~~~ 73 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD---GRDILREWREKG--QRE 73 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999999999999999999999998888877654 3468888887654322 223444554421 223
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++.......... ..-..+...++.||+....+...+...+.
T Consensus 74 ~ii~lt~~~~~~~~~-~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 74 PVLILTARDALAERV-EGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cEEEEECCCCHHHHH-HHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 344443322211111 11122556789999999999888877664
No 197
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=86.80 E-value=6.3 Score=40.42 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=76.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++.........|...|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ...
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~l~~~lr~~~--~~~ 73 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDED---GLSLIRRWRSND--VSL 73 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999998888899999999999999999999877654 3467888876554322 223444444422 122
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
+++++.......... ..-..+...++.||+....+...+...+..
T Consensus 74 pii~ls~~~~~~~~~-~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 74 PILVLTARESWQDKV-EVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CEEEEEcCCCHHHHH-HHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 333333222211111 111225567999999999999888877653
No 198
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=86.64 E-value=3.7 Score=41.27 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=75.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.-+.+|||+..-+.-..+.|...|+++....+..+-+... .......++.|..+...++ ..+...+...+.. -|
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~--~~~~pGclllDvrMPg~sG---lelq~~L~~~~~~-~P 78 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA--PLDRPGCLLLDVRMPGMSG---LELQDRLAERGIR-LP 78 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc--cCCCCCeEEEecCCCCCch---HHHHHHHHhcCCC-CC
Confidence 4578999999999999999999999999999999888762 1223445666665544332 2344444443322 14
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.+++..-..-+-.-...+. |...++.||++.+.+.+++++++..
T Consensus 79 VIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 4443222111111111222 3457899999999999999988864
No 199
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=86.23 E-value=17 Score=37.14 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=75.4
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..... ..++.+++|..+...+ .......++.. . ..
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~--~-~~ 73 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQW--S-AI 73 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcC--C-CC
Confidence 468999999999999999999999999999998888876543 3468888887654432 22344445432 1 22
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++......... ...-..+...++.||+....+...+...+.
T Consensus 74 pvi~lt~~~~~~~~-~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 74 PVIVLSARSEESDK-IAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred CEEEEECCCCHHHH-HHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33333322211111 111122456799999999999888877664
No 200
>CHL00148 orf27 Ycf27; Reviewed
Probab=86.10 E-value=8.1 Score=39.95 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=76.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.++++++|+++.........++..|+.+..+.+..+++..+.. ..++++++|..+.... ....+..++.. . .
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~--~-~ 77 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLD---GYGVCQEIRKE--S-D 77 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhc--C-C
Confidence 4689999999999998899999999999988999888877654 3467888886654432 22334444432 1 2
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+++++........... .-..+...++.||+....+...+...+.
T Consensus 78 ~~ii~ls~~~~~~~~~~-~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 78 VPIIMLTALGDVSDRIT-GLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred CcEEEEECCCCHHhHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33343433222111111 1112456789999999999888877664
No 201
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=85.91 E-value=0.52 Score=57.65 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=23.7
Q ss_pred CceEeec--H-HHHHHHHHHHHHHHhhccCC---CeEEEEE
Q 002821 386 PETLIGD--P-GRFRQIITNLMGNSIKFTEK---GHIFVTV 420 (876)
Q Consensus 386 p~~v~~D--~-~rl~qIl~NLl~NAiKfT~~---G~I~v~v 420 (876)
|.+.+|+ + .-|.+++.-||+|||.-.-. ..|.|.+
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 5556664 3 45899999999999983323 3555554
No 202
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=85.90 E-value=9.7 Score=38.89 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=76.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|....... ....+..++... ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDIS---GFELCRQLLAFH--PAL 76 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 479999999998888888999999999989898888876643 3467888876654322 233444554432 223
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++........... .-..+...++.||+....+...+...+.
T Consensus 77 ~ii~ls~~~~~~~~~~-a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 77 PVIFLTARSDEVDRLV-GLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred CEEEEEcCCcHHHHHH-HhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 3444433222111111 1123566899999999999888887664
No 203
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=85.89 E-value=8.2 Score=39.42 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=75.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++.........++..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~---~~ 74 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGED---GLMLTRELRSRS---TV 74 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC---CC
Confidence 478999999998888889999999999999999998877654 3478888886553322 233444555421 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++.......... ..-..+...++.||+....+...+...+.
T Consensus 75 ~ii~l~~~~~~~~~~-~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 75 GIILVTGRTDSIDRI-VGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred CEEEEECCCcHHHHH-HHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 333443322211111 11122556799999999998887776553
No 204
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=85.83 E-value=7.2 Score=40.62 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=76.3
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++++++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ .......++.. ....
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~~~~~ir~~---~~~p 74 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKD---GMTICRDLRPK---WQGP 74 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc---CCCC
Confidence 68999999999999999999999999999999998887654 3467888886654332 23344455442 1223
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
++++........... .-..+...++.||+....+...+...+..
T Consensus 75 ii~l~~~~~~~~~~~-~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 75 IVLLTSLDSDMNHIL-ALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 333333222111111 11225567999999999998888776643
No 205
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=85.63 E-value=1.1 Score=54.30 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVG 507 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~ 507 (876)
.|.|.|+|+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 499999999999999999999987643
No 206
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=85.48 E-value=3.7 Score=50.12 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=58.1
Q ss_pred eEEEEeCC-HHH-----HHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 002821 731 KILIVDDN-NVN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 804 (876)
Q Consensus 731 ~ILvVdDn-~~n-----~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 804 (876)
+||+|+++ ..+ .+.+...|++.|++|..+.+..+++.........+.|+.|.+- -..++++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHh-----
Confidence 35666555 222 4567778899999999999999999988666678899998432 124477777763
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCH
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 836 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~ 836 (876)
+..+||+++......
T Consensus 74 -----------------~~~~Pv~~~~~~~~~ 88 (714)
T PRK15400 74 -----------------NENLPLYAFANTYST 88 (714)
T ss_pred -----------------CCCCCEEEEcccccc
Confidence 347999998775433
No 207
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=85.41 E-value=16 Score=34.89 Aligned_cols=111 Identities=8% Similarity=0.021 Sum_probs=72.1
Q ss_pred eCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccccc
Q 002821 736 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 812 (876)
Q Consensus 736 dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 812 (876)
|-+..-..++..+|+..||+|+.. .+.++.++... ++.+|+|.+--.|.. -.+..+.+.+.-.+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~-e~~adii~iSsl~~~--~~~~~~~~~~~L~~---------- 79 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV-EADVHVVGVSSLAGG--HLTLVPALRKELDK---------- 79 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCchhh--hHHHHHHHHHHHHh----------
Confidence 444555678899999999999864 35677777775 467999988665532 12333333321100
Q ss_pred chhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 813 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 813 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
. ...+++|+ +-+....++..+..++|+|+|+..=-+..+....+.+-
T Consensus 80 ------~-g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 80 ------L-GRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKK 126 (132)
T ss_pred ------c-CCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 0 01134444 45445667788899999999999888888887776653
No 208
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=85.38 E-value=8.5 Score=39.25 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=76.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++..+......++..|+.+..+.+..+++..+.. ..++.+++|..+...+ .......++... ..
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~---~~ 72 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD---GWQILQTLRTAK---QT 72 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHcCC---CC
Confidence 368999999999998899999999999999999998887654 4478888886654432 223344444321 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++......... ...-..+...++.||+....+...+...+.
T Consensus 73 ~ii~ls~~~~~~~~-~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 73 PVICLTARDSVDDR-VRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred CEEEEECCCCHHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 34444332211111 111122556799999999999888887764
No 209
>PRK13435 response regulator; Provisional
Probab=84.69 E-value=15 Score=34.92 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=74.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
..++++++++..........+...|+.+. .+++..+++..+.. ..++.+++|....... ........+++. .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~--~~~~~~~~l~~~---~ 77 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGP--TGVEVARRLSAD---G 77 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCC--cHHHHHHHHHhC---C
Confidence 46899999999999999999999999976 67888888776643 3568888876543211 112223333332 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++...... .. ....+...++.||+....+...+.+...
T Consensus 78 ~~pii~ls~~~~~--~~--~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 78 GVEVVFMTGNPER--VP--HDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred CCCEEEEeCCHHH--HH--HHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2334444332221 11 1123566889999999999998887763
No 210
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=84.27 E-value=9.9 Score=40.45 Aligned_cols=120 Identities=11% Similarity=0.181 Sum_probs=76.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++|+++.........+... ++. +..+.+..+++..+.. ..++++++|..+...+. ......++......
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG---~~~l~~i~~~~~~~ 77 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDG---IGVLEKLNEIELSA 77 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHhhcccc
Confidence 57999999999998888888764 555 4478899999888764 34688888877654332 23444454433222
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.++++++...... .........+...++.||+....+...+.+.+..
T Consensus 78 ~~~iI~lt~~~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAFGQE-KITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCCCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 2444444322211 1111111235667999999999999999887643
No 211
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=83.91 E-value=4.9 Score=41.20 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=72.5
Q ss_pred EEEEECCchhhHHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 583 KALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
+||+++|++.-+++.+.+++.. |+++ -.+.+..++...+..-.+ +++++|.-+.+..+ ..++..++...+..
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~p--DLILLDiYmPd~~G---i~lL~~ir~~~~~~- 75 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKP--DLILLDIYMPDGNG---IELLPELRSQHYPV- 75 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCC--CEEEEeeccCCCcc---HHHHHHHHhcCCCC-
Confidence 6899999999999999888875 6664 467889999988876544 88888865544332 23455555433222
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 704 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 704 (876)
..+++.+.+--..-... -..|+..++.||+....+..+|.+-
T Consensus 76 DVI~iTAA~d~~tI~~a--lr~Gv~DYLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 76 DVIVITAASDMETIKEA--LRYGVVDYLIKPFTFERLQQALTRY 117 (224)
T ss_pred CEEEEeccchHHHHHHH--HhcCchhheecceeHHHHHHHHHHH
Confidence 22222221111111111 1225678999999999999888654
No 212
>PRK13856 two-component response regulator VirG; Provisional
Probab=83.86 E-value=8.6 Score=40.19 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=75.3
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++++++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...+...++.. ....
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~l~~~i~~~---~~~p 74 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGRED---GLEIVRSLATK---SDVP 74 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc---CCCc
Confidence 68999999999999999999999999999999888876643 3468888886654332 22234444432 1223
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++.............-..+...++.||+....+...++..+.
T Consensus 75 ii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 75 IIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 33333211111111011122566899999999999888877664
No 213
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=83.69 E-value=8.4 Score=40.45 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=73.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++|+++..+......|... |+.+ ..+++..+++..+......++++++|..+...+. ......+++...
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G---~eli~~l~~~~~-- 76 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENG---LDLLPVLHEAGC-- 76 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCc---HHHHHHHHhhCC--
Confidence 47899999999888888888764 6764 4678888888777544455788999876654332 233444444321
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 704 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 704 (876)
..+++++............ -..+...++.||+....+..++.+.
T Consensus 77 ~~~vI~ls~~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 77 KSDVIVISSAADAATIKDS-LHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCEEEEECCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2334444333222111111 1225667999999999988888653
No 214
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=82.95 E-value=13 Score=38.01 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=75.1
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+..... ....+...++... ...+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~-~g~~~~~~i~~~~--~~~p 76 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEID-GGFMLCQDLRSLS--ATLP 76 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCC-CHHHHHHHHHhcC--CCCC
Confidence 689999999988888999999999999999988888876543 3678888866543111 1223444454432 1223
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++......... ..-..+...++.||.....+...++..+.
T Consensus 77 ii~ls~~~~~~~~~-~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 77 IIFLTARDSDFDTV-SGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EEEEECCCCHHHHH-HHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 34443322211111 11122556799999999999888877664
No 215
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=82.91 E-value=14 Score=38.02 Aligned_cols=121 Identities=10% Similarity=0.135 Sum_probs=76.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCc-E-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~-~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
+++++++|+++.........|+..+. . +..+.+..+++..+.. ..++++++|..+...........+..++...
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~-- 78 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHF-- 78 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC--
Confidence 46899999999998888888887664 3 6678888888877654 3468888886654321011233445554421
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...+++++............ -..+...++.||.....+..++..++.
T Consensus 79 ~~~~iIvls~~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCcEEEEEecCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 22345555433222111111 223566899999999999988887653
No 216
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=82.74 E-value=13 Score=38.51 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=75.6
Q ss_pred CcEEEEECCchhhHHHHHHHHHH-hCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~-~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......+.. .|+. +..+.+..+++..+.. ..++++++|..+...+ .......++....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~---gle~~~~l~~~~~- 77 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGR---GINLLHELVQAHY- 77 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCc---HHHHHHHHHhcCC-
Confidence 36899999999998888888886 4774 7788999999888764 3468888887665433 2234445544221
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
..++++++.......... .-..+...++.||+....+...+++..
T Consensus 78 -~~~iivls~~~~~~~~~~-al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 78 -PGDVVFTTAASDMETVSE-AVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred -CCCEEEEEcCCCHHHHHH-HHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 233444433222111111 112356689999999999999887653
No 217
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.66 E-value=13 Score=39.23 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=60.2
Q ss_pred HHHhHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC---------C-CCHHHHHHHHHhhcccccccccccccch
Q 002821 747 AGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSI 814 (876)
Q Consensus 747 ~~L~~~g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~MP---------~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 814 (876)
+.|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~dd~~~ar~l~~--~G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~--------------- 173 (248)
T cd04728 117 EILVKEGFTVLPYCTDDPVLAKRLED--AGCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER--------------- 173 (248)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---------------
Confidence 34445699877 6677777766542 457887 77 1 13 6777888762
Q ss_pred hhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE-----eCCCCHHHHHHHH
Q 002821 815 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 864 (876)
Q Consensus 815 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l 864 (876)
..+|||+=-+-...++..+|++.|+|+++ .|.-++..+.++.
T Consensus 174 --------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred --------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 25899988888889999999999999985 5634444444433
No 218
>PRK15115 response regulator GlrR; Provisional
Probab=82.65 E-value=6.3 Score=45.73 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=79.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++... ..
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~---g~~ll~~l~~~~--~~ 77 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMD---GMQLFAEIQKVQ--PG 77 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3689999999999999999999999999999999999887754 3468888887654432 223344444321 12
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++.......... .....+...++.||+....+...+...+.
T Consensus 78 ~pvIvlt~~~~~~~~~-~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 78 MPVIILTAHGSIPDAV-AATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CcEEEEECCCCHHHHH-HHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 3344443322111111 11123456789999999999998887764
No 219
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=82.46 E-value=6.4 Score=45.55 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=77.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......+..+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ..
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~---G~~~~~~ir~~~--~~ 77 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMD---GIATLKEIKALN--PA 77 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 4689999999999999999999999999999999999887764 3468888887665432 223344444322 22
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++........... -..+...++.||+....+...+...+.
T Consensus 78 ~~vi~lt~~~~~~~~~~a-~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 78 IPVLIMTAYSSVETAVEA-LKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CeEEEEECCCCHHHHHHH-HHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 334444322111111111 112445788999999998888876653
No 220
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.19 E-value=13 Score=39.12 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=60.3
Q ss_pred HHHhHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC---------C-CCHHHHHHHHHhhcccccccccccccch
Q 002821 747 AGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSI 814 (876)
Q Consensus 747 ~~L~~~g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~MP---------~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 814 (876)
+.|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~--~G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~--------------- 173 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEE--AGCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ--------------- 173 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---------------
Confidence 34445699877 6677777766542 457887 77 1 13 6777777762
Q ss_pred hhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE-----eCCCCHHHHHHHH
Q 002821 815 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 864 (876)
Q Consensus 815 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l 864 (876)
..+|||+=-+-...++..+|++.|+|+.+ .|--++..+.++.
T Consensus 174 --------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af 220 (250)
T PRK00208 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAF 220 (250)
T ss_pred --------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHH
Confidence 25899988888889999999999999985 5633444444433
No 221
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=82.17 E-value=6 Score=52.15 Aligned_cols=118 Identities=15% Similarity=0.278 Sum_probs=80.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..++|+||+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~---g~~~~~~i~~~~--~~ 1030 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMD---GFELTRKLREQN--SS 1030 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 4689999999999999999999999999999999999988754 4578889887664433 223344444322 12
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++........... ....+...++.||+....+...+.+...
T Consensus 1031 ~pii~lt~~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1031 LPIWGLTANAQANEREK-GLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CCEEEEECCCCHHHHHH-HHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 23333333222111111 1123567899999999999988877654
No 222
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=81.67 E-value=29 Score=33.28 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCC-C-HHHHHHHHHhhccccccccccccc
Q 002821 738 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM-D-GFEATKIIREMEHNFNNRIRRGEV 812 (876)
Q Consensus 738 n~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~m-d-G~e~~~~IR~~~~~~~~~~~~g~~ 812 (876)
+..-..++..+|+..||+|... ...++-++... ++.+|+|-+...|-.. . --++.+.+|+..
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~adiVglS~l~~~~~~~~~~~~~~l~~~g------------ 80 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKADAILVSSLYGHGEIDCKGLRQKCDEAG------------ 80 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEecccccCHHHHHHHHHHHHHCC------------
Confidence 3445678899999999999964 45667777764 5689999988877422 1 122334444311
Q ss_pred chhhhccCCCCCCcEEEEcCCC--CHHh----HHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 813 SIEAYENVSNFHVPILAMTADV--IQAT----YEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 813 ~~~~~~~~~~~~~pIIalTa~~--~~~~----~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
...+ .|++-+.. .+++ ..+..++|++......-..+++...|++.+
T Consensus 81 ---------l~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 81 ---------LEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred ---------CCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 1133 35455531 1222 446889999999998888899988888765
No 223
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=81.59 E-value=9.1 Score=38.45 Aligned_cols=117 Identities=10% Similarity=0.204 Sum_probs=75.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
++++++|+++.........|+..|+.+. .+.+..+++..+.. ..++++++|....... ...+...++.... .
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~--~ 73 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 73 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCC---HHHHHHHHHhhCC--C
Confidence 4689999999999989999999999987 68888888877654 3468888887654332 2234444443221 2
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+++++.......... .....+...++.||+....+...++..+.
T Consensus 74 ~~ii~ls~~~~~~~~~-~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 74 GIIIIVSAKNDHFYGK-HCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CeEEEEeCCCCHHHHH-HHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 2344443322211111 11123566899999999999999888764
No 224
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=80.90 E-value=8.8 Score=44.87 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=77.3
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++... ...
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~d---gl~~l~~ir~~~--~~~ 76 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMD---GLALLKQIKQRH--PML 76 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 579999999999999999999999999999999999988764 3468888887654432 223344444322 122
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+++++......... .....+...++.||+....+...+...+.
T Consensus 77 pvIvlt~~~~~~~~~-~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 77 PVIIMTAHSDLDAAV-SAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred eEEEEECCCCHHHHH-HHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 333333322211111 11122556899999999888887776553
No 225
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=80.74 E-value=1.1 Score=53.75 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=31.0
Q ss_pred EEEEEeeCCCCChhhHh-----------hhccccccc---CCCCCCCCCcccccHHHHHHHHHHc
Q 002821 481 IVSVEDTGQGIPLEAQS-----------RIFTPFMQV---GPSISRTHGGTGIGLSISKYLVGRM 531 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~-----------~iF~pF~q~---~~s~~~~~~GtGLGLsI~k~lv~~m 531 (876)
.|+|.|+|.|||-+... -+|.-.... +.+..-..|-.|.|.+.|.-|-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 38999999999986542 123222111 1111112344899999998887665
No 226
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=80.44 E-value=26 Score=31.02 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=71.3
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
..+++++++++.........+..+|.. +..+.+..+++..... ..++.++++...... ........++......
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~---~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNM---DGLELLKTIRADGAMS 79 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCC---CHHHHHHHHHhCCCcC
Confidence 468899999999998899999999984 7778888888776543 345677776543221 2233444554432222
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
...++++.......... .....+...++.||+....+...+++.+
T Consensus 80 ~~~~i~~~~~~~~~~~~-~~~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 80 ALPVLMVTAEAKKENII-AAAQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred CCcEEEEECCCCHHHHH-HHHHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 22333333221111111 1111245678899999988887776654
No 227
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.13 E-value=17 Score=37.32 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=67.4
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhh
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREM 799 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~ 799 (876)
+.+||+. |-+..=..++..+|+..|++|.... ..++-++.+. .+.||+|-+-..|+.. +.-++.+.+|+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-EHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 3578888 7788778999999999999998543 3455566654 5789999999877654 223444555542
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeC
Q 002821 800 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 853 (876)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 853 (876)
. .+..++|++=-+.... + -+-..|+|.|-.=
T Consensus 161 ~--------------------~~~~~~i~vGG~~~~~-~--~~~~~GaD~~~~d 191 (201)
T cd02070 161 G--------------------LRDKVKVMVGGAPVNQ-E--FADEIGADGYAED 191 (201)
T ss_pred C--------------------CCcCCeEEEECCcCCH-H--HHHHcCCcEEECC
Confidence 1 1225666655444433 2 4667799988753
No 228
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=79.71 E-value=5.5 Score=46.03 Aligned_cols=116 Identities=16% Similarity=0.312 Sum_probs=77.3
Q ss_pred EEEEECCchhhHHHHHHHHHH--hCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 583 KALVVDPRPIRAKVSRYHIQR--LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~--~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
+|++|||.+.-++-.+..+.. +|+. |..|.++.+|+..+.. ..+++++.|-.++..++- .+...++.. .+
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGL---dLI~~ike~--~p 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGL---DLIKAIKEQ--SP 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHH---HHHHHHHHh--CC
Confidence 689999999988888777654 5776 4578899999998876 457788888887766542 234444442 22
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
....+++. +-+.-+-....-..++..++.||+....+..+|.+..+
T Consensus 76 ~~~~IILS-Gy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 76 DTEFIILS-GYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred CceEEEEe-ccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 34444443 22221111111233667899999999999999988765
No 229
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=78.91 E-value=1.3 Score=53.50 Aligned_cols=51 Identities=29% Similarity=0.539 Sum_probs=30.4
Q ss_pred EEEEEeeCCCCChhhH--------hhhcccccc---cCCCCCCCCCc-ccccHHHHHHHHHHc
Q 002821 481 IVSVEDTGQGIPLEAQ--------SRIFTPFMQ---VGPSISRTHGG-TGIGLSISKYLVGRM 531 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~--------~~iF~pF~q---~~~s~~~~~~G-tGLGLsI~k~lv~~m 531 (876)
.|+|.|+|.|||-+.. +-+|.-... .|.+..+..|| .|.|++.|..|-+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 4899999999997532 223322211 11222222344 799999988887643
No 230
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=78.86 E-value=14 Score=38.40 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=68.7
Q ss_pred CeEEEE----eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC-CH-HHHHHHHHhhc
Q 002821 730 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREME 800 (876)
Q Consensus 730 ~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~m-dG-~e~~~~IR~~~ 800 (876)
.+|++. |.+..=..++..+|+..|++|+... ..++.++.+. ++.+|+|.+-..|+.- .. -++.+++++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~-~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK-EHKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 578888 8888888999999999999999754 3455566654 5789999999888632 22 2334445431
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHH---HHHcCCCeeEeCCC
Q 002821 801 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---CLRSGMDGYVSKPF 855 (876)
Q Consensus 801 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~---~~~aG~d~yl~KP~ 855 (876)
..+++|++=-+-..++...+ |-.-|+|.|-.=..
T Consensus 167 ---------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~ 203 (213)
T cd02069 167 ---------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDAS 203 (213)
T ss_pred ---------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHH
Confidence 22577766555444444433 34579998875443
No 231
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=78.69 E-value=45 Score=31.70 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhhccccccccccccc
Q 002821 738 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREMEHNFNNRIRRGEV 812 (876)
Q Consensus 738 n~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~~~~~~~~~~~g~~ 812 (876)
+..-..++..+|+..||+|.-. ...++-++... ++.+|+|.+...|.. |.. -++.+.+|+..
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~adiVglS~L~t~~~~~~~~~~~~l~~~g------------ 78 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDADAILVSSLYGHGEIDCKGLREKCDEAG------------ 78 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCCHHHHHHHHHHHHHCC------------
Confidence 3345578889999999999853 45566666664 568999999887753 322 23445555411
Q ss_pred chhhhccCCCCCCcEEEEcCCC--C----HHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 813 SIEAYENVSNFHVPILAMTADV--I----QATYEECLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 813 ~~~~~~~~~~~~~pIIalTa~~--~----~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
..++||+ +-+.. . .++..+..++|++......-+++++...|+
T Consensus 79 ---------l~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 79 ---------LKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ---------CCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1244544 44432 1 344566889999999998888888877665
No 232
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.18 E-value=11 Score=34.79 Aligned_cols=93 Identities=25% Similarity=0.302 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeC-CCCCCC-HHHHHHHHHhhccccccccccccc
Q 002821 738 NNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDI-QMPEMD-GFEATKIIREMEHNFNNRIRRGEV 812 (876)
Q Consensus 738 n~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi-~MP~md-G~e~~~~IR~~~~~~~~~~~~g~~ 812 (876)
.+.-...+..+|++.|++|...+ +.++..+.+. ...||+|.+.. ..+... ..++++.+|+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~-~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~------------- 78 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR-AERPDVVGISVSMTPNLPEAKRLARAIKER------------- 78 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH-HTTCSEEEEEESSSTHHHHHHHHHHHHHTT-------------
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh-cCCCcEEEEEccCcCcHHHHHHHHHHHHhc-------------
Confidence 35567889999999999998762 3455555554 45799999998 443332 34445555542
Q ss_pred chhhhccCCCCCCcEEEEcCCCCHHhHHHHHH--cCCCeeEeCC
Q 002821 813 SIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKP 854 (876)
Q Consensus 813 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~--aG~d~yl~KP 854 (876)
.++++|+ +-+..-....+.+++ .|+|..+.-.
T Consensus 79 ---------~p~~~iv-~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 ---------NPNIPIV-VGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp ---------CTTSEEE-EEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred ---------CCCCEEE-EECCchhcChHHHhccCcCcceecCCC
Confidence 3345555 444444555566665 7888776543
No 233
>PRK14084 two-component response regulator; Provisional
Probab=77.10 E-value=17 Score=38.03 Aligned_cols=115 Identities=13% Similarity=0.309 Sum_probs=74.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhC-c-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLG-I-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
++++++|+++..+......+...+ + .+..+.+..+++..+.. ..++++++|..+...+ .......++... .
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~---G~~~~~~i~~~~--~ 73 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDES---GIELAAKIQKMK--E 73 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--C
Confidence 368999999999888888998876 3 46778899888887764 3578899988765432 233344444422 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+.++.++.. ..... ..-..+...++.||+....+..++.+...
T Consensus 74 ~~~iI~~t~~-~~~~~--~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 74 PPAIIFATAH-DQFAV--KAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred CCEEEEEecC-hHHHH--HHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2333333322 21111 11123456799999999999999888753
No 234
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=77.07 E-value=34 Score=35.18 Aligned_cols=116 Identities=13% Similarity=0.190 Sum_probs=75.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++.........|...|+.+..+.+..+++..+.. ..++.+++|..+.... .......++.. . ..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~--~-~~ 82 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTD---GLTLCREIRRF--S-DI 82 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc--C-CC
Confidence 379999999999999999999999999999999988887754 3467888876654332 22334444432 1 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++............ -..+...++.||+....+...+...+.
T Consensus 83 pii~l~~~~~~~~~~~~-~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 83 PIVMVTAKIEEIDRLLG-LEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred CEEEEEcCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 33444332221111111 122456799999999998888776654
No 235
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=76.65 E-value=3.2 Score=49.17 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=28.8
Q ss_pred EEEEEeeCCCCChhhHhhhc--------cccccc---CCCCCCCCCcccccHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEAQSRIF--------TPFMQV---GPSISRTHGGTGIGLSISKYLVG 529 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF--------~pF~q~---~~s~~~~~~GtGLGLsI~k~lv~ 529 (876)
.++|+|||+||+.++...-. ..|.+. +...+.--|-.|+|++=|--.++
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAd 134 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVAD 134 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeee
Confidence 58999999999998754322 112211 11112234668899886654443
No 236
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=76.62 E-value=17 Score=42.26 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=77.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
+.+++++|+++..+......+..+|+.+..+.+..+++..+... .++.+++|..+...+ ...++..+++.. ..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~---g~~ll~~i~~~~--~~ 76 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMD---GIKALKEMRSHE--TR 76 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 45799999999999999999999999999999999998877643 468888887654332 223444444432 12
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++..... ......-..+...++.||+....+...+...+.
T Consensus 77 ~pvI~lt~~~~~-~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 77 TPVILMTAYAEV-ETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CCEEEEeCCCCH-HHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 333333322111 111111122566799999999888888876654
No 237
>PRK09191 two-component response regulator; Provisional
Probab=76.40 E-value=30 Score=36.48 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=73.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.+++++|+++..+......++..|+.+. .+.+..+++..+.. ..++++++|....... .....+..++... .
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~--~g~e~l~~l~~~~---~ 210 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGS--SGIDAVNDILKTF---D 210 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCC--CHHHHHHHHHHhC---C
Confidence 4689999999999999999999999987 67888888877654 3578888887654211 1222344444432 2
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+++++...... .. .....+...++.||+....+...+.+.+.
T Consensus 211 ~pii~ls~~~~~-~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 211 VPVIFITAFPER-LL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred CCEEEEeCCCcH-HH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 233333332111 11 01111234578999999999999887653
No 238
>PRK09483 response regulator; Provisional
Probab=75.83 E-value=20 Score=36.32 Aligned_cols=117 Identities=9% Similarity=0.122 Sum_probs=75.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++|+++..+......|+.. |+.+. .+++..+++..+.. ..++.+++|......+ ...++..+++.. .
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~--~ 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIG---GLEATRKILRYT--P 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHC--C
Confidence 36899999999998888889875 78775 67888888877654 3468888887654332 223344444322 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++............ -..+...++.||.....+..++..++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 75 DVKIIMLTVHTENPLPAKV-MQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred CCeEEEEeCCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 2344444332221111111 122566789999999999999888764
No 239
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=75.53 E-value=11 Score=47.91 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=34.0
Q ss_pred CcccCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCC
Q 002821 576 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 613 (876)
Q Consensus 576 ~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~ 613 (876)
...+.|.+++++|+++..+.+...+|++||+.|..+.+
T Consensus 684 ~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 684 EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 34578999999999999999999999999999988875
No 240
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.32 E-value=18 Score=38.91 Aligned_cols=114 Identities=14% Similarity=0.253 Sum_probs=75.1
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
++++||++..........|.+.|-.+..++...+++..+... .++++++|..+.... ...++...+... ..-+
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~n---giefaeQvr~i~--~~v~ 74 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMN---GIEFAEQVRDIE--SAVP 74 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCcc---HHHHHHHHHHhh--ccCc
Confidence 689999999999999999999998888999999999988764 456777776654322 233444444432 1222
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++.. -. +......+.....+++||+.+..|..++.+...
T Consensus 75 iifIss-h~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 75 IIFISS-HA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred EEEEec-ch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 222222 11 111111112224789999999999998887763
No 241
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=75.13 E-value=19 Score=36.37 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=73.2
Q ss_pred EEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceE
Q 002821 584 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 663 (876)
Q Consensus 584 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (876)
++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|..+...+ .......++... ...++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~~i 73 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMD---GWQILQTLRRSG--KQTPV 73 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHccC--CCCcE
Confidence 3678888888888888899999999999999998887654 3467888876544322 223344444322 12334
Q ss_pred EEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 664 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 664 ~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++............ -..+...++.||+....+...+...+.
T Consensus 74 ivls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 74 LFLTARDSVADKVKG-LDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred EEEEcCCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 444332221111111 122556799999999999888887664
No 242
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=74.35 E-value=23 Score=35.86 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=73.1
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++|+++.........+...|..+..+.+..++...+.. ..++.+++|....... .......++.... ..+
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~---~~~~~~~i~~~~~--~~~ 74 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMD---GLEVLQRLRKRGQ--TLP 74 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--CCC
Confidence 68899999998888888999999999989998888766543 3467788776543322 2223444443221 223
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++........... .-..+...++.||+....+...+...+.
T Consensus 75 ii~lt~~~~~~~~~~-~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 75 VLLLTARSAVADRVK-GLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred EEEEECCCCHHHHHH-HHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 333333222111111 1112556799999999999888877654
No 243
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=72.46 E-value=30 Score=35.95 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=72.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
++++++|+++..+......+..+| .. +..+.+..+++..+.. ..++++++|..+...++ ..+...++. ..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G---~~~~~~l~~---~~ 73 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISG---LELVGMLDP---EH 73 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHhcc---cC
Confidence 478999999999999999999888 33 4567888888877654 35788999887654322 222333321 11
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+.+++++.. ..... ..-..+...++.||+....+..++.++..
T Consensus 74 ~~~ii~vt~~-~~~~~--~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 74 MPYIVFVTAF-DEYAI--KAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred CCEEEEEecc-HHHHH--HHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2334444332 21111 11112455789999999999998888764
No 244
>PRK13557 histidine kinase; Provisional
Probab=71.16 E-value=41 Score=39.53 Aligned_cols=121 Identities=19% Similarity=0.254 Sum_probs=78.7
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccc-cCcchhHHHHHHHhhcCC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~ 657 (876)
..+.+++++++++.........++.+|+.+..+.+..+++..+... ..++++++|..... .+ ...+...++....
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~---~~~~~~~l~~~~~ 488 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMN---GVMLAREARRRQP 488 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCC---HHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999999988876432 35778888776543 22 1233444443221
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++......... ......+...++.||+....+...+...+.
T Consensus 489 --~~~ii~~~~~~~~~~~-~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 489 --KIKVLLTTGYAEASIE-RTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred --CCcEEEEcCCCchhhh-hhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 2333333332221111 111122345689999999999998887664
No 245
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.86 E-value=46 Score=30.30 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=60.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g-~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.++.++|.++... ..+...|+.+...+.. .+.++.+ .-...+.+++...-. ..-+.++..+|++.
T Consensus 22 ~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a-~i~~a~~vv~~~~~d-~~n~~~~~~~r~~~-------- 87 (116)
T PF02254_consen 22 IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERA-GIEKADAVVILTDDD-EENLLIALLARELN-------- 87 (116)
T ss_dssp SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHT-TGGCESEEEEESSSH-HHHHHHHHHHHHHT--------
T ss_pred CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhc-CccccCEEEEccCCH-HHHHHHHHHHHHHC--------
Confidence 4799999998763 3445567887775544 3445555 335689888877532 44566777787742
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
+..+|++... +.+......++|+|..+.
T Consensus 88 --------------~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 88 --------------PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp --------------TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred --------------CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 3567887664 455666777899987764
No 246
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=70.11 E-value=40 Score=34.88 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred EEEEECCchhhHHHHHHHHHHhC-cEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g-~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
+++++|+.+..+.-.+..|+..+ ++| ..+.+..+++.... ...++.+++|..+...+ .......+++.. ..
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~--~~~pdvvl~Dl~mP~~~---G~e~~~~l~~~~--p~ 74 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR--ELKPDVVLLDLSMPGMD---GLEALKQLRARG--PD 74 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh--hcCCCEEEEcCCCCCCC---hHHHHHHHHHHC--CC
Confidence 58999999999998888888776 664 45566888887633 35678888886655433 233344444222 12
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... -..|...++.|......+..+++.++.
T Consensus 75 ~~vvvlt~~~~~~~v~~a-l~~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 75 IKVVVLTAHDDPAYVIRA-LRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred CcEEEEeccCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 355555443332222111 122566899999999999999988764
No 247
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=68.65 E-value=1.7e+02 Score=31.16 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHHHHHHhhc
Q 002821 392 DPGRFRQIITNLMGNSIKF 410 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKf 410 (876)
...+|.+.|.+..+..+.+
T Consensus 191 ~~~~i~~~l~~~~~~~v~~ 209 (246)
T TIGR03321 191 QREQIRDTIRETLGPEIRL 209 (246)
T ss_pred HHHHHHHHHHHHHCCCeeE
Confidence 4566777777766554444
No 248
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=66.75 E-value=29 Score=40.17 Aligned_cols=116 Identities=12% Similarity=0.169 Sum_probs=70.7
Q ss_pred EEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccC--cchhHHHHHHHhhcCCCCCc
Q 002821 584 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 584 ~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++|+++..+......+ .|+.+..+.+..+++..+... .++++++|..+.... .......+..++... ...
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 368888888777777666 789999999999999888653 568888887654321 112223344444322 123
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... -..+...++.||+....+...+..++.
T Consensus 75 piI~lt~~~~~~~~~~a-~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 75 KVIVITGNDDRENAVKA-IGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CEEEEecCCCHHHHHHH-HHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 33444332221111111 112556799999999998887776553
No 249
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=66.04 E-value=38 Score=32.96 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=71.8
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
..++||++.........-+++-|+.|..+.+..+++...+...+.+ ..+|-.+-. .....++..++.... ...
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~Pay--AvvDlkL~~---gsGL~~i~~lr~~~~--d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAY--AVVDLKLGD---GSGLAVIEALRERRA--DMR 83 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCce--EEEEeeecC---CCchHHHHHHHhcCC--cce
Confidence 5789999999999999999999999999999999999887654433 344433322 223345555554322 234
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 704 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 704 (876)
++++..-.+-..+.... -.|...++.||-....+...+.+.
T Consensus 84 ivvLTGy~sIATAV~Av-KlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 84 IVVLTGYASIATAVEAV-KLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEEEecchHHHHHHHHH-HhhhhhhcCCCCChHHHHHHHhhc
Confidence 44443211111111000 013446899999988888777654
No 250
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=65.89 E-value=10 Score=38.33 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=44.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCE---EEEEcCHHHHHHHh-CCCCCccEEEEeCCCCCCCH---HHHHHHHH
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAA---VVCVERGKKATELL-MPPHQFDACFMDIQMPEMDG---FEATKIIR 797 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~---v~~a~~g~eA~~~~-~~~~~~DlilmDi~MP~mdG---~e~~~~IR 797 (876)
+++..||-|+.....++.-+++.|.. .+...|...++... .....||+||+|- |-..+ .+++..|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 58999999999999999999998842 34556767777654 2356899999994 54444 34555554
No 251
>PLN03237 DNA topoisomerase 2; Provisional
Probab=65.79 E-value=10 Score=49.61 Aligned_cols=54 Identities=26% Similarity=0.523 Sum_probs=33.2
Q ss_pred EEEEEeeCCCCChhhHh--------hhccccccc---CCCCCCCCCc-ccccHHHHHHHHHHcCCE
Q 002821 481 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKGE 534 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~mgG~ 534 (876)
.|+|.|+|.|||-+..+ -||.-.... |.+..+..|| .|.|.+.|.-|-+.+--+
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Ve 177 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIE 177 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEE
Confidence 48999999999976432 244433321 1122223344 799999998887665433
No 252
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=64.64 E-value=0.66 Score=57.05 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=14.6
Q ss_pred CCc-ccccHHHHHHHHHHc
Q 002821 514 HGG-TGIGLSISKYLVGRM 531 (876)
Q Consensus 514 ~~G-tGLGLsI~k~lv~~m 531 (876)
.|| .|.|++.|..|-+.+
T Consensus 246 SGGLHGVG~SVVNALS~~l 264 (903)
T PTZ00109 246 SSGLHGVGLSVVNALSSFL 264 (903)
T ss_pred cCcCCCcceeeeeeccCeE
Confidence 355 799999999888776
No 253
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=63.86 E-value=43 Score=33.22 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=70.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++|+++.........+... |+. +..+++..+++..+.. ..++++++|......+ ...++..++.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~----- 71 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDIS---GLELLSQLPK----- 71 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHcc-----
Confidence 36899999998888888888654 565 5678888888887753 3468888876543322 1223333321
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++............ -..+...++.||+....+...+..++.
T Consensus 72 ~~~vi~~s~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 72 GMATIMLSVHDSPALVEQA-LNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEECCCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 2334444332221111111 112566799999999999999887764
No 254
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=63.25 E-value=25 Score=36.70 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=42.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC--EEEEEc--CHHHHHHHhCCCCCccEEEEeCCCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVE--RGKKATELLMPPHQFDACFMDIQMP 785 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~--~v~~a~--~g~eA~~~~~~~~~~DlilmDi~MP 785 (876)
.+|.-+|=|+...+.+++.+++.|. .+.... +..+.++.. ....||+||+|..=+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK~ 143 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADKA 143 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCChh
Confidence 3899999999999999999999986 344544 555555542 257899999998543
No 255
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=62.25 E-value=75 Score=33.00 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHHHhH-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhcccccccccccccch
Q 002821 744 VAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSI 814 (876)
Q Consensus 744 vl~~~L~~-~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~ 814 (876)
-+...+++ .|..+. .+.+.+++.... ...+|+|..... .+...+++.+++|++.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~--~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~--------------- 171 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQ--KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA--------------- 171 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHH--HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---------------
Confidence 34444455 566554 456677776554 245898855321 1223457888888862
Q ss_pred hhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 815 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 815 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.++||++..+-.+.++..+++++|+|+++.
T Consensus 172 --------~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 --------VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred --------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 258999988877899999999999998754
No 256
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=62.19 E-value=41 Score=33.05 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=72.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++++++|......+ ...+...++... ...
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~---~~~~~~~l~~~~--~~~ 76 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGID---GIELLRRLKARG--SPL 76 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC--CCC
Confidence 568999999999888899999999999998888887766543 3467788776543322 222344444322 123
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++........... ....+...++.||+....+...+...+.
T Consensus 77 ~ii~l~~~~~~~~~~~-~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 77 PVIVMTGHGDVPLAVE-AMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred CEEEEECCCCHHHHHH-HHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 3334433221111100 0112345678899998888887776654
No 257
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=61.95 E-value=57 Score=32.53 Aligned_cols=118 Identities=12% Similarity=0.194 Sum_probs=72.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++.........+... ++.+. .+.+..+++..+.. ..++++++|......+ ...+...++...
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~-- 75 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTD---GFTFLKRIKQIQ-- 75 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHhC--
Confidence 357899999999888888888877 57765 57777777776543 3578888887654332 223344444321
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
....++++.......... .....+...++.||+....+...++..+.
T Consensus 76 ~~~~ii~ls~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 76 STVKVLFLSSKSECFYAG-RAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred CCCcEEEEECCCcHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 122344443322211111 11122556789999999999998887764
No 258
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=61.44 E-value=37 Score=28.36 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=61.8
Q ss_pred EECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEE
Q 002821 586 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 665 (876)
Q Consensus 586 vvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 665 (876)
++++++.........+...|+.+..+.+...++..+... .++.++++....... .......++.. . ....+++
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~---~~~~~~~l~~~-~-~~~~~i~ 74 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMD---GLELLRRIRKR-G-PDIPIIF 74 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCc---hHHHHHHHHHh-C-CCCCEEE
Confidence 567777777777888888899998888888888766543 467777765543322 12233344433 1 1223333
Q ss_pred EecccCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 002821 666 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 703 (876)
Q Consensus 666 l~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 703 (876)
+............ ...+...++.+|.....+...+..
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 75 LTAHGDDEDAVEA-LKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred EEecccHHHHHHH-HHcChhhHccCCCCHHHHHHHHHh
Confidence 3221111100000 112344677888888877776653
No 259
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=61.31 E-value=1.1e+02 Score=31.37 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=59.1
Q ss_pred HcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCC--------CHHHHHHHHHhhcccccccccccccchhhhccCC
Q 002821 751 RYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEM--------DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 821 (876)
Q Consensus 751 ~~g~~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP~m--------dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 821 (876)
..|..+-. +.+-.++.+... ...|.|...--.|.. .|++..+++++.
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~~--~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------- 157 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAALA--AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA---------------------- 157 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHhH--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------
Confidence 34444333 345566666552 468999887555533 468888888763
Q ss_pred CCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHh
Q 002821 822 NFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 866 (876)
Q Consensus 822 ~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~ 866 (876)
..++||++.-+ ...+...+++++|++++.. +.-++.+..+.+.+
T Consensus 158 ~~~~~v~a~GG-I~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 158 VGDIPIVAIGG-ITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred cCCCCEEEECC-cCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 12388887765 4688999999999999974 54456555554444
No 260
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=60.15 E-value=31 Score=33.30 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=44.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEc----CHHHHHHHhCCCCCccEEEEeCCCCC
Q 002821 727 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE----RGKKATELLMPPHQFDACFMDIQMPE 786 (876)
Q Consensus 727 ~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~----~g~eA~~~~~~~~~~DlilmDi~MP~ 786 (876)
+.|++|+|+..+....+-+..+|.+.|+.|..+. +.+++++ .-|+|+.-.--|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------hCCEEEEecCCCC
Confidence 5689999999999999999999999999999988 4444332 3699998876663
No 261
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=59.80 E-value=1.7e+02 Score=28.31 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=78.1
Q ss_pred CeEEEE----eCCHHHHHHHHHHHhHcCCEEEE---EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccc
Q 002821 730 RKILIV----DDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHN 802 (876)
Q Consensus 730 ~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~---a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~ 802 (876)
.||||. |-+..-.+++...|+..|++|+. ..+..|++.... ++..|+|.+... .-...+++..+++.-.+
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-~~dv~vIgvSsl--~g~h~~l~~~lve~lre 89 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-EEDVDVIGVSSL--DGGHLTLVPGLVEALRE 89 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-hcCCCEEEEEec--cchHHHHHHHHHHHHHH
Confidence 456654 67777789999999999999995 578899988874 467898877542 22334455555442111
Q ss_pred ccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 803 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 803 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
.| ..++. +.+-+.-..++..+..+.|++.++.-=....+....|..-
T Consensus 90 ------~G-----------~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 90 ------AG-----------VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred ------hC-----------CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 01 11233 3556666677778888899999998777777666555443
No 262
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=59.61 E-value=27 Score=36.02 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEE-EEcCHHHHHHHhCCC---CCccEEEEeCC
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQ 783 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eA~~~~~~~---~~~DlilmDi~ 783 (876)
+.+|.-+|-|+....+++..+++.|+ .|. ...++.+.+..+... ..||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 45899999999999999999999886 344 456777777765322 36999999985
No 263
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=59.47 E-value=39 Score=36.58 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=51.6
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+.+-++|.+.+. ..+|+|++| +|+.-+=-++.+.+|+.. ++ .++..++..
T Consensus 191 IeVEv~tleea~ea~~--~GaDiI~lD-n~~~e~l~~~v~~l~~~~----------------------~~-~~leasGGI 244 (277)
T TIGR01334 191 ITVEADTIEQALTVLQ--ASPDILQLD-KFTPQQLHHLHERLKFFD----------------------HI-PTLAAAGGI 244 (277)
T ss_pred EEEECCCHHHHHHHHH--cCcCEEEEC-CCCHHHHHHHHHHHhccC----------------------CC-EEEEEECCC
Confidence 4456789999999884 458999999 455555555555555311 12 368899999
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...+..+.|+|-+.
T Consensus 245 ~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 245 NPENIADYIEAGIDLFI 261 (277)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998653
No 264
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=59.36 E-value=24 Score=37.76 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=42.2
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCC------CCHHhHHHHHHcCCCeeEeCCCCHHHHH
Q 002821 788 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLY 861 (876)
Q Consensus 788 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~~L~ 861 (876)
+.++.++++|+. ...+|+++||=. ..+...++|.++|+|+.|.-.+..++..
T Consensus 75 ~~~~~~~~~r~~----------------------~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~ 132 (258)
T PRK13111 75 DVFELVREIREK----------------------DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAE 132 (258)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 457788888842 246899999843 4456789999999999999877777666
Q ss_pred HHHHh
Q 002821 862 REVSR 866 (876)
Q Consensus 862 ~~l~~ 866 (876)
..+.+
T Consensus 133 ~~~~~ 137 (258)
T PRK13111 133 ELRAA 137 (258)
T ss_pred HHHHH
Confidence 55543
No 265
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=59.01 E-value=71 Score=32.66 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=62.0
Q ss_pred CeEEEE----eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCC-CH-HHHHHHHHhhc
Q 002821 730 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREME 800 (876)
Q Consensus 730 ~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~m-dG-~e~~~~IR~~~ 800 (876)
.+|++. |.+..-..++..+|+..||+|.... ..++-++.+. ...||+|.+-+.|+.. .. -+..+.+|+..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-KEKPLMLTGSALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEccccccCHHHHHHHHHHHHHcC
Confidence 356554 4566677889999999999999653 3455566664 5789999999877643 22 23344555421
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 801 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 801 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
....++|+ +-+..... .-|.+.|+|.|-.
T Consensus 164 --------------------~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 --------------------YRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred --------------------CCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 12235555 44444332 3567889999864
No 266
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=58.18 E-value=97 Score=33.17 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHhHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 002821 745 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 822 (876)
Q Consensus 745 l~~~L~~~g~~--v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 822 (876)
++..|+.-... +.+......+.+.+. ...||.|++|++=-.+|--++...||..+.
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------- 67 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLG-LAGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------- 67 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHH-hcCCCEEEEccccCCCCHHHHHHHHHHHhh---------------------
Confidence 55666553221 222334456667664 346999999999999998888888887532
Q ss_pred CCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC-CHHHHHHHHH
Q 002821 823 FHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVS 865 (876)
Q Consensus 823 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~ 865 (876)
..++.++=....+.....+++++|+++.+.-=+ +.++....++
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 124445555666889999999999999987655 5566666554
No 267
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=57.26 E-value=87 Score=32.63 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=46.9
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHh
Q 002821 763 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 838 (876)
Q Consensus 763 ~eA~~~~~~~~~~D-lilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 838 (876)
.+.++.+. ...+| ++++|+.--++ .| +++++++++. ..+||++-.+-.+.++
T Consensus 148 ~~~~~~~~-~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvia~GGi~~~~d 203 (230)
T TIGR00007 148 EELAKRLE-ELGLEGIIYTDISRDGTLSGPNFELTKELVKA-----------------------VNVPVIASGGVSSIDD 203 (230)
T ss_pred HHHHHHHH-hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444453 34577 77788854332 22 6777887752 3589999999899999
Q ss_pred HHHHHHcCCCeeEe
Q 002821 839 YEECLRSGMDGYVS 852 (876)
Q Consensus 839 ~~~~~~aG~d~yl~ 852 (876)
..++++.|+++++.
T Consensus 204 i~~~~~~Gadgv~i 217 (230)
T TIGR00007 204 LIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999875
No 268
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=56.24 E-value=82 Score=38.94 Aligned_cols=111 Identities=8% Similarity=0.064 Sum_probs=75.0
Q ss_pred eCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhccccccccccc
Q 002821 736 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 736 dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~g 810 (876)
|.+..-...+..+|+..|++|+.- .+.+++++... ...+|+|.+...+... ..-++++.+|+..
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~-~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G---------- 661 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV-ENDVHVVGVSSLAAGHKTLVPALIEALKKLG---------- 661 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH-HcCCCEEEEeccchhhHHHHHHHHHHHHhcC----------
Confidence 344455577889999999999743 35677777775 4678998876655432 2345666666521
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+++|+ +-+...+++.+.+.++|+|+|+..=.+..+....+.+.+.
T Consensus 662 -----------~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 662 -----------REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred -----------CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1123333 4554355566778899999999998998888888777653
No 269
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=55.56 E-value=1.5e+02 Score=30.72 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=53.9
Q ss_pred HHHhHcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhcccccccccccccchhhh
Q 002821 747 AGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 817 (876)
Q Consensus 747 ~~L~~~g-~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 817 (876)
..+++.| ..+ ..+.+..++..... ..+|+|..-.. .+...+++.++++++.
T Consensus 116 ~~~~~~g~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~------------------ 175 (219)
T cd04729 116 KRIHEEYNCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA------------------ 175 (219)
T ss_pred HHHHHHhCCeEEEECCCHHHHHHHHH--cCCCEEEccCccccccccCCCCCCHHHHHHHHHh------------------
Confidence 3344444 443 34567777766653 45888754211 1223457888888862
Q ss_pred ccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 818 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 818 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
..+||++..+-.+.++..++++.|+|+.+.
T Consensus 176 -----~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 176 -----LGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred -----cCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 158999888777899999999999999875
No 270
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=53.29 E-value=23 Score=35.88 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=41.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 782 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi 782 (876)
++||++|...-.---+..+|+..|++|....|....++.+. ...||.|++--
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~-~~~pd~iviSP 53 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE-ALKPDAIVISP 53 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh-hcCCCEEEEcC
Confidence 47999999999999999999999999998887743334442 35689999864
No 271
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=53.29 E-value=93 Score=28.51 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=30.0
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHH
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 615 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~ 615 (876)
|+|++|++..|+.-....|+=.|.+++.+++..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~ 33 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD 33 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH
Confidence 589999999999999999999999999988744
No 272
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=53.00 E-value=1.4e+02 Score=32.26 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=65.5
Q ss_pred HHHHHhHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 002821 745 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 822 (876)
Q Consensus 745 l~~~L~~~g~~--v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 822 (876)
++..|+.-... ..+.-....+.+.+.. ..||.|++|++=-..|--++...||....
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~-~GfD~v~iD~EHg~~~~~~l~~~i~a~~~--------------------- 66 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAIAP--------------------- 66 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHH-cCCCEEEEccccCCCCHHHHHHHHHHHHh---------------------
Confidence 55555542221 2223334556666643 45999999999988888888888887532
Q ss_pred CCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCC-HHHHHHHHH
Q 002821 823 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFE-AEQLYREVS 865 (876)
Q Consensus 823 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~-~~~L~~~l~ 865 (876)
..++.++=....+.....+++++|+++.+.-=++ .++..+.++
T Consensus 67 ~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 67 YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 1233444555668889999999999999987764 455555544
No 273
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.82 E-value=85 Score=33.11 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=47.8
Q ss_pred HHHHHHhCCCCCccEEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhH
Q 002821 763 KKATELLMPPHQFDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 839 (876)
Q Consensus 763 ~eA~~~~~~~~~~DlilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~ 839 (876)
.+.++.+....--.+|++|+..-++ .| +++++++++. .++||++--+-.+.++.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-----------------------~~ipvi~~GGi~s~edi 207 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-----------------------TTIPVIASGGIRHQQDI 207 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHH
Confidence 3444444322224699999976554 33 5667777652 35899999999999999
Q ss_pred HHHHHcCCCeeEe
Q 002821 840 EECLRSGMDGYVS 852 (876)
Q Consensus 840 ~~~~~aG~d~yl~ 852 (876)
.++++.|+++.+.
T Consensus 208 ~~l~~~G~~~viv 220 (234)
T PRK13587 208 QRLASLNVHAAII 220 (234)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999875
No 274
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=52.60 E-value=84 Score=33.06 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCC-H--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHh
Q 002821 762 GKKATELLMPPHQFDACFMDIQMPEMD-G--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 838 (876)
Q Consensus 762 g~eA~~~~~~~~~~DlilmDi~MP~md-G--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 838 (876)
..+.++.+.. ..-.++++|+..-++. | ++++++|.+. ..+|+++--+-.+.++
T Consensus 148 ~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-----------------------~~ipvi~~GGi~s~ed 203 (233)
T cd04723 148 PEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-----------------------ADIPVIAAGGVRSVED 203 (233)
T ss_pred HHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-----------------------cCCCEEEeCCCCCHHH
Confidence 4555555543 3225899999765432 2 5667777652 3589999999999999
Q ss_pred HHHHHHcCCCeeEe
Q 002821 839 YEECLRSGMDGYVS 852 (876)
Q Consensus 839 ~~~~~~aG~d~yl~ 852 (876)
..+++++|+++.+.
T Consensus 204 i~~l~~~G~~~viv 217 (233)
T cd04723 204 LELLKKLGASGALV 217 (233)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998874
No 275
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=52.55 E-value=1.9e+02 Score=29.27 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=60.2
Q ss_pred eEEEEeCC--HHHHHHHHHHHhHcCCEEE----EEcCHHHHHHHhCCCCCccEEEEeC-----CCCCCCHHHHHHHHHhh
Q 002821 731 KILIVDDN--NVNLKVAAAGLKRYGAAVV----CVERGKKATELLMPPHQFDACFMDI-----QMPEMDGFEATKIIREM 799 (876)
Q Consensus 731 ~ILvVdDn--~~n~~vl~~~L~~~g~~v~----~a~~g~eA~~~~~~~~~~DlilmDi-----~MP~mdG~e~~~~IR~~ 799 (876)
..+++.+. +.....+....++.|..+. .+.+..++.+.+. ...|.|.... ......+.+.++++++.
T Consensus 79 d~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~ 156 (202)
T cd04726 79 DIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK--LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL 156 (202)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH--CCCCEEEEcCcccccccCCCCCHHHHHHHHhh
Confidence 45554443 2233445566677787654 4557788877543 4678887742 11124567777777652
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 800 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.++||++ ++....+...+++++|+|.++.
T Consensus 157 -----------------------~~~~i~~-~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 -----------------------LGVKVAV-AGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred -----------------------cCCCEEE-ECCcCHHHHHHHHhcCCCEEEE
Confidence 2567764 5556789999999999998754
No 276
>PLN02591 tryptophan synthase
Probab=52.28 E-value=37 Score=36.19 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCCcEEEEcCCCC------HHhHHHHHHcCCCeeEeCCCCHHHHHHHHHh
Q 002821 823 FHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVSR 866 (876)
Q Consensus 823 ~~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~ 866 (876)
.++|+|+||=... +....+|.++|+|+.|.-.+..++......+
T Consensus 77 ~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~ 126 (250)
T PLN02591 77 LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAE 126 (250)
T ss_pred CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 3589888886443 4568889999999999998887777655544
No 277
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.97 E-value=1.7e+02 Score=25.95 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=44.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEE------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCV------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 799 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a------~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~ 799 (876)
+||||-..+.+...++..++++|+..... ......++... ...|+|++=. +.-+-.++..+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t---~~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFT---DYVSHNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEe---CCcChHHHHHHHHH
Confidence 48999998889999999999999998888 22222244332 3469887633 33456667777663
No 278
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.71 E-value=2.5e+02 Score=27.76 Aligned_cols=121 Identities=19% Similarity=0.246 Sum_probs=73.6
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHH
Q 002821 283 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 362 (876)
Q Consensus 283 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll~~v 362 (876)
+.+.+.|++=.|..+|-.-+++|.+..-+ .+-++.|..|+..+. +.|.|+|+--|.---.-..+|-.+.=+-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~ad---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGAD---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCcc---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 45679999999999999999999887655 345666666666544 56789998766544333456655543333
Q ss_pred HHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCe-EEEEE
Q 002821 363 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTV 420 (876)
Q Consensus 363 ~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-I~v~v 420 (876)
.+.|. .+| -++....+.. + ..+.+. +.+.||+-=|--.-+.|+ +.+++
T Consensus 91 ~~~~a---~ek-pe~~W~g~r~----~-~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 91 QDFFA---NEK-PELTWNGPRA----I-LPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHHh---ccC-CcccccCChh----h-cCcchH-HHHHHHHHHHcccCCCCCeeEEEe
Confidence 33332 233 3444433221 1 133333 467888877777777665 44443
No 279
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=51.20 E-value=2.2e+02 Score=31.69 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=62.9
Q ss_pred eEEEEe----CCHHHHHHHHHHHhHcC-CEEEE--EcCHHHHHHHhCCCCCccEEEEeC-------CCC----CCC--HH
Q 002821 731 KILIVD----DNNVNLKVAAAGLKRYG-AAVVC--VERGKKATELLMPPHQFDACFMDI-------QMP----EMD--GF 790 (876)
Q Consensus 731 ~ILvVd----Dn~~n~~vl~~~L~~~g-~~v~~--a~~g~eA~~~~~~~~~~DlilmDi-------~MP----~md--G~ 790 (876)
.++++| ++...++.++.+=++++ ..|.. +.+.++|..+.. ..+|+|..-+ .-+ ... ++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 577775 33344444555544554 44443 678888888763 4588876331 111 112 45
Q ss_pred HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 791 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 791 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.+++.+++. .++|||+--+-....+..+|+.+|++.+..
T Consensus 191 ~ai~~~~~~-----------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 191 AALRWCAKA-----------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 567777641 258999999999999999999999997753
No 280
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=50.78 E-value=1.7e+02 Score=31.10 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=61.0
Q ss_pred cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhH
Q 002821 760 ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 839 (876)
Q Consensus 760 ~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~ 839 (876)
-....+.+++. ...||.|++|++=-.+|--++...+|..+. ..++.++=....+....
T Consensus 20 ~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~---------------------~g~~~~VRvp~~~~~~i 77 (249)
T TIGR03239 20 LGNPITTEVLG-LAGFDWLLLDGEHAPNDVLTFIPQLMALKG---------------------SASAPVVRPPWNEPVII 77 (249)
T ss_pred CCCcHHHHHHH-hcCCCEEEEecccCCCCHHHHHHHHHHHhh---------------------cCCCcEEECCCCCHHHH
Confidence 44456667664 346999999999999998888888887532 12344444566788999
Q ss_pred HHHHHcCCCeeEeCCC-CHHHHHHHHH
Q 002821 840 EECLRSGMDGYVSKPF-EAEQLYREVS 865 (876)
Q Consensus 840 ~~~~~aG~d~yl~KP~-~~~~L~~~l~ 865 (876)
.+++++|+++.+.-=+ +.++..++++
T Consensus 78 ~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 78 KRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 9999999999987655 5566665554
No 281
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=50.37 E-value=54 Score=33.25 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=40.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC--E-EEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA--A-VVCVERGKKATELLMPPHQFDACFMDI 782 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~--~-v~~a~~g~eA~~~~~~~~~~DlilmDi 782 (876)
.++++||-|.....++..-++..|. . .....|...++..+.....||+||+|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 5899999999999999999988772 3 333455557777765444599999995
No 282
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.02 E-value=1.7e+02 Score=31.04 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=55.7
Q ss_pred HHHHHHHHHhHcCCEEEEEcCH---HHHHHHhCCCCCccEEEEeCCCCCCC------HHHHHHHHHhhcccccccccccc
Q 002821 741 NLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMD------GFEATKIIREMEHNFNNRIRRGE 811 (876)
Q Consensus 741 n~~vl~~~L~~~g~~v~~a~~g---~eA~~~~~~~~~~DlilmDi~MP~md------G~e~~~~IR~~~~~~~~~~~~g~ 811 (876)
....+...+++.|.++..+-+. .+.++.+. .....+++| -.+|+-. -.+.++++|++-
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~----------- 183 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV----------- 183 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc-----------
Confidence 4455677888899876665443 34455443 244677888 4566632 234556666531
Q ss_pred cchhhhccCCCCCCcEEEEcCCC-CHHhHHHHHHcCCCeeEeCC
Q 002821 812 VSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKP 854 (876)
Q Consensus 812 ~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~aG~d~yl~KP 854 (876)
...||+ +-+.. ..++..++.++|+|+++.=-
T Consensus 184 -----------~~~~i~-v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 -----------GNKYLV-VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -----------CCCCEE-EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 124654 44444 78899999999999998754
No 283
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=49.72 E-value=2.3 Score=50.16 Aligned_cols=51 Identities=35% Similarity=0.660 Sum_probs=31.8
Q ss_pred EEEEEeeCCCCChhhHhh--------hcccccccC---CCCCCCCCc-ccccHHHHHHHHHHc
Q 002821 481 IVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRM 531 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~--------iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~m 531 (876)
.|+|.|+|.|||-+..+. ||.-..... .......|| .|.|.|.|..|-+.+
T Consensus 69 sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 69 SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceE
Confidence 389999999999887433 454432211 111122233 689999998887654
No 284
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=49.64 E-value=2.2e+02 Score=29.39 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=52.1
Q ss_pred HhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCC
Q 002821 749 LKRYGAAVV-CVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 824 (876)
Q Consensus 749 L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~ 824 (876)
....|..+. .+.+-.++.+.. ...+|.+..- .... ..+++.++++++.- ...
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~--~~g~~~i~~t~~~~~~~-~~~~~~~~~l~~~~---------------------~~~ 172 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERAL--ALGAKIIGINNRDLKTF-EVDLNTTERLAPLI---------------------PKD 172 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHH--HcCCCEEEEeCCCcccc-CcCHHHHHHHHHhC---------------------CCC
Confidence 355787654 345555555544 2457777543 1111 12357778777521 125
Q ss_pred CcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 825 VPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 825 ~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
+|+++..+-...++..+++++|+|+++.
T Consensus 173 ~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 173 VILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 7999999988999999999999999863
No 285
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=49.41 E-value=34 Score=40.95 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=32.2
Q ss_pred eEEEEEEeeCCCCChhhHhhhcccccccC------CCCCCCCCcccccHH
Q 002821 479 NLIVSVEDTGQGIPLEAQSRIFTPFMQVG------PSISRTHGGTGIGLS 522 (876)
Q Consensus 479 ~l~i~V~DtG~GI~~e~~~~iF~pF~q~~------~s~~~~~~GtGLGLs 522 (876)
.+.|.|.|+|.|+..+++..+=++|+..+ ....+.+|=-|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 45799999999999999999998887643 233455665554444
No 286
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=49.14 E-value=48 Score=35.51 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCC------HHhHHHHHHcCCCeeEeCCCCHHHHH
Q 002821 788 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLY 861 (876)
Q Consensus 788 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~ 861 (876)
+.++.++.||+. ...+|++.|+-... +....+|.++|+|+.+.-....++..
T Consensus 73 ~~~~~v~~ir~~----------------------~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~ 130 (256)
T TIGR00262 73 KCFELLKKVRQK----------------------HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESG 130 (256)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHH
Confidence 457778888852 13579888877655 67788999999999998877777665
Q ss_pred HHHHh
Q 002821 862 REVSR 866 (876)
Q Consensus 862 ~~l~~ 866 (876)
..+..
T Consensus 131 ~~~~~ 135 (256)
T TIGR00262 131 DLVEA 135 (256)
T ss_pred HHHHH
Confidence 55543
No 287
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=48.67 E-value=1.4e+02 Score=29.39 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=70.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++++++..+......+..++ +. +..+.+...++..... ..++.+++|....... .......++...
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---~~~~~~~l~~~~-- 75 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMN---GLDVIPQLHQRW-- 75 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHC--
Confidence 4679999999999988888888764 55 3467777777765543 3467778776543322 222344444322
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...+++++............ ...+...++.||.....+...+...+.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 76 PAMNILVLTARQEEHMASRT-LAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred CCCcEEEEeCCCCHHHHHHH-HHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 12334444332221111111 112456789999999999888887653
No 288
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.46 E-value=1.8e+02 Score=27.49 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 230 LAISTSIGILVIASLVGHIFQATVN 254 (876)
Q Consensus 230 ~~~~~~~~~l~i~~l~~~~~~~~~~ 254 (876)
..|...+..+|+.+++|+++.+...
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333333444555555555544433
No 289
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=48.26 E-value=17 Score=47.71 Aligned_cols=51 Identities=25% Similarity=0.556 Sum_probs=31.8
Q ss_pred EEEEEeeCCCCChhhHh--------hhccccccc---CCCCCCCCCc-ccccHHHHHHHHHHc
Q 002821 481 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRM 531 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~--------~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~m 531 (876)
.|+|.|+|.|||-+..+ -||.-.... |....+..|| .|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 48999999999986432 244433322 1122223344 699999888877654
No 290
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=48.22 E-value=1e+02 Score=26.24 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=46.6
Q ss_pred hHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHHHHHH
Q 002821 287 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 366 (876)
Q Consensus 287 iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll~~v~~~~ 366 (876)
+.|-+|+-|..|.+++.+-.....+++-++.+..+..-...+.. +.+.|--+ + ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~-vh~~L~~~----~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIAL-VHEQLYQS----E----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcC----C----CCCeecHHHHHHHHHHHH
Confidence 57999999999999999876665566656655555544444332 22322211 1 224589999999888766
Q ss_pred H
Q 002821 367 S 367 (876)
Q Consensus 367 ~ 367 (876)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 291
>PRK10651 transcriptional regulator NarL; Provisional
Probab=48.06 E-value=1.4e+02 Score=29.65 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=71.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......+... ++. +..+.+..+++..+.. ..++.+++|....... .......++....
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~---~~~~~~~l~~~~~- 79 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMN---GLETLDKLREKSL- 79 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 357899999998888888888765 454 4467888888877654 3467788876554332 2233444443221
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++............ -..+...++.||+....+...+..++.
T Consensus 80 -~~~vi~l~~~~~~~~~~~~-~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 80 -SGRIVVFSVSNHEEDVVTA-LKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred -CCcEEEEeCCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 2234444332221111111 112456789999999999999988764
No 292
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=48.05 E-value=25 Score=41.16 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEEeeCCCCChhhHhhhccccccc
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQV 506 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~ 506 (876)
.+.|.|+|-||-.++++-+-++|.+.
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 47899999999999999999999753
No 293
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=48.01 E-value=1.1e+02 Score=37.16 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=62.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHH-HHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~e-A~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+..+.++|.|+...+. +++.|+.+...+-.+. .++.. .-++.|+++.-..=+ .+-..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~----~~~~g~~v~~GDat~~~~L~~a-gi~~A~~vv~~~~d~-~~n~~i~~~~r~~-------- 488 (601)
T PRK03659 423 KMRITVLERDISAVNL----MRKYGYKVYYGDATQLELLRAA-GAEKAEAIVITCNEP-EDTMKIVELCQQH-------- 488 (601)
T ss_pred CCCEEEEECCHHHHHH----HHhCCCeEEEeeCCCHHHHHhc-CCccCCEEEEEeCCH-HHHHHHHHHHHHH--------
Confidence 4578999999875543 3557888887765443 34444 334678887765433 2234566667763
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 853 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 853 (876)
+++++||+-+. +++..++..++|+|..+.-
T Consensus 489 --------------~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 489 --------------FPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred --------------CCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 35688888764 4667778889999987754
No 294
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.70 E-value=2e+02 Score=34.53 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=64.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHH-HHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~-eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+..++++|.|+...+.+ ++.|+.+.+.+-.. +.++.. .-++.|.++.-..=...+ ..++..+|+.
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a-~i~~a~~viv~~~~~~~~-~~iv~~~~~~-------- 505 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLA-HLDCARWLLLTIPNGYEA-GEIVASAREK-------- 505 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhc-CccccCEEEEEcCChHHH-HHHHHHHHHH--------
Confidence 45688999887654333 45688877765443 445544 234688777654321111 1344555653
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
+++.+||+-+. +++..+...++|+|..+. | ...+.+.+.+.+..
T Consensus 506 --------------~~~~~iiar~~--~~~~~~~l~~~Gad~vv~-p--~~~~a~~i~~~l~~ 549 (558)
T PRK10669 506 --------------RPDIEIIARAH--YDDEVAYITERGANQVVM-G--EREIARTMLELLET 549 (558)
T ss_pred --------------CCCCeEEEEEC--CHHHHHHHHHcCCCEEEC-h--HHHHHHHHHHHhcC
Confidence 34578888764 356666678899997763 2 34555556655544
No 295
>PLN03128 DNA topoisomerase 2; Provisional
Probab=47.61 E-value=27 Score=45.20 Aligned_cols=51 Identities=27% Similarity=0.552 Sum_probs=30.3
Q ss_pred EEEEEeeCCCCChhhH--------hhhccccccc---CCCCCCCCCc-ccccHHHHHHHHHHc
Q 002821 481 IVSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRM 531 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~--------~~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~m 531 (876)
.|+|.|+|.|||-+.. +-||.-.... |.+..+..|| .|.|.+.|.-+-+.+
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~f 149 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTEF 149 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCeE
Confidence 4899999999997633 2234333221 1121223344 699999887776543
No 296
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=47.12 E-value=2.6e+02 Score=29.96 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=66.2
Q ss_pred EEEeC-CHHHHHHHHHHHhHcCCEE-EEEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhcccccccc
Q 002821 733 LIVDD-NNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 733 LvVdD-n~~n~~vl~~~L~~~g~~v-~~a~~g~eA~~~~~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
|++.+ .+....-+....+.+|..+ +.+.+..|+..... ..+|+|-.. ++--.-| ++.+.++...-+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p------ 209 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--LGAPLIGINNRNLKTFEVD-LETTERLAPLIP------ 209 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEECCCCcccccCC-HHHHHHHHHhCC------
Confidence 34444 3434555555556788764 45778877766552 357877543 1122233 666777665211
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE-----eCCCCHHHHH
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLY 861 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~ 861 (876)
...|+|+.++-...++..++.++|+|+++ .||-++.+..
T Consensus 210 ---------------~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 210 ---------------SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAAL 253 (260)
T ss_pred ---------------CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHH
Confidence 13589999999999999999999999974 5665554443
No 297
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=46.58 E-value=3.9e+02 Score=28.47 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=12.4
Q ss_pred cHHHHHHHHHH-HH--HHHhhcc
Q 002821 392 DPGRFRQIITN-LM--GNSIKFT 411 (876)
Q Consensus 392 D~~rl~qIl~N-Ll--~NAiKfT 411 (876)
+..+++..|.. ++ +..+.|.
T Consensus 190 ~~~~~~~~l~~~~~~~~~~~~f~ 212 (250)
T PRK14474 190 LRAQILESLHQTHLIPGTDIHFV 212 (250)
T ss_pred HHHHHHHHHHHHhcCCCCceeee
Confidence 56777777777 66 3344454
No 298
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=46.48 E-value=1.4e+02 Score=32.25 Aligned_cols=101 Identities=25% Similarity=0.336 Sum_probs=66.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEE--c---CHHHHHHHhCCCCCccEEEEeCCC---------CCCCH------
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCV--E---RGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 789 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a--~---~g~eA~~~~~~~~~~DlilmDi~M---------P~mdG------ 789 (876)
.|||=+|-++.-.+.....-+++|..+... . -...-.+++ +.+.||++++==+= -.++.
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 184 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-EEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKY 184 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-HHcCCCEEEEeCchhhhcCCCChhhhhhhhccHH
Confidence 489999999999998888888888766532 1 222333444 56889998753211 11111
Q ss_pred -HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCC
Q 002821 790 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 854 (876)
Q Consensus 790 -~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 854 (876)
.|+.+..|+.+++. +- +++-|.+.+...+..++|||| |=+-|
T Consensus 185 FVeaV~~aR~~ep~~--------------------D~--LVIfAGACQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 185 FVEAVKEARKYEPNL--------------------DD--LVIFAGACQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred HHHHHHHHHhcCCCc--------------------cc--EEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 35777777766532 12 334567889999999999998 44433
No 299
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.08 E-value=1.7e+02 Score=31.73 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=60.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhH---cC---CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKR---YG---AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 804 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~---~g---~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 804 (876)
.|||-|++-... .+...+++ .. -..+.+++-+||.+.+. ...|+|++|-+.|+ +=-++.+.+++..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~--agaDiI~LDn~~~e-~l~~~v~~l~~~~---- 227 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK--AGADIIMLDNMTPE-EIREVIEALKREG---- 227 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH--cCcCEEEECCCCHH-HHHHHHHHHHhcC----
Confidence 477777774433 44444432 22 23456789999999884 45899999965443 2222333333210
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
..++ ..+..++....+...+..+.|+|.+.
T Consensus 228 ----------------~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 228 ----------------LRER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred ----------------cCCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 0122 36778999999999999999998654
No 300
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=45.96 E-value=1.1e+02 Score=32.87 Aligned_cols=101 Identities=21% Similarity=0.329 Sum_probs=66.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEE-----cCHHHHHHHhCCCCCccEEEEeCCC---------CCCCH------
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCV-----ERGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 789 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a-----~~g~eA~~~~~~~~~~DlilmDi~M---------P~mdG------ 789 (876)
.|||=+|-++.-.+.....-++.|..+.-. +-...-.+++ +.+.||++++==+= -+++-
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 183 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-EEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKY 183 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-HHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHH
Confidence 489999999999998888888888765532 2333444555 46889998753211 01111
Q ss_pred -HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCC
Q 002821 790 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 854 (876)
Q Consensus 790 -~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 854 (876)
.|+.+..|+.+++. -=+++-|.+.+...+..++|||| |=+-|
T Consensus 184 FVeaVk~aR~y~~~~----------------------D~LVIFAGACQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 184 FVETVREARKYVPSL----------------------DQLVIFAGACQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred HHHHHHHHHhcCCCc----------------------ccEEEEcchhHHHHHHHHHcCcc-ccCCc
Confidence 35667777655432 12344567889999999999998 44444
No 301
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=45.28 E-value=57 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCC------HHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 824 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 824 ~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
.+|+++|+-... +....+|.++|+++.+.-....+++...+.
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 578888887443 667888999999999985444455544443
No 302
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=45.12 E-value=1.3e+02 Score=30.44 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=54.6
Q ss_pred HhHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcE
Q 002821 749 LKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 827 (876)
Q Consensus 749 L~~~g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pI 827 (876)
.+.+|.. +.-+.+..|+.+... ..+|.|-++- ++.. |.+..+.++.. .+++|+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~--~Gad~i~~~p-~~~~-g~~~~~~l~~~----------------------~~~~p~ 146 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE--LGADIVKLFP-AEAV-GPAYIKALKGP----------------------FPQVRF 146 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH--CCCCEEEEcC-Cccc-CHHHHHHHHhh----------------------CCCCeE
Confidence 3444543 334668888888763 4689998864 4444 99999998752 235788
Q ss_pred EEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 828 LAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 828 IalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
++.-+ ...+...+++++|++....
T Consensus 147 ~a~GG-I~~~n~~~~~~~G~~~v~v 170 (190)
T cd00452 147 MPTGG-VSLDNAAEWLAAGVVAVGG 170 (190)
T ss_pred EEeCC-CCHHHHHHHHHCCCEEEEE
Confidence 87655 5889999999999987654
No 303
>PRK10742 putative methyltransferase; Provisional
Probab=44.92 E-value=2.6e+02 Score=29.76 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=43.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHc------CC----EEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCC
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRY------GA----AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD 788 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~------g~----~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~md 788 (876)
|.+|..||-|+....+++.-|++. +. .+. ...|..+.+... ...||+|++|-+-|.-.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCCcEEEECCCCCCCc
Confidence 567999999999999999999984 21 222 245666666654 23699999999999754
No 304
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=44.85 E-value=2.3e+02 Score=29.03 Aligned_cols=116 Identities=5% Similarity=0.015 Sum_probs=69.4
Q ss_pred EEEEECCchhhHHHHHHHHHHhCc---EEEEeCCHHHHHHHHhcCCCcceEEEeecc--ccccCcchhHHHHHHHhhcCC
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQE--VWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~---~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~ 657 (876)
.++++|+++..+.-.+..|...+. .+..+++..+++..+... .++++++|.. +..++. ......+++..+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g---~~~i~~i~~~~p 76 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASN---SQRIKQIINQHP 76 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCCh---HHHHHHHHHHCC
Confidence 578999999999999999987653 345678888888766433 3589999954 322221 234455544322
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++..............+ ....++.|+.....+...++.+..
T Consensus 77 --~~~iivlt~~~~~~~~~~~~~~-~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 77 --NTLFIVFMAIANIHFDEYLLVR-KNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred --CCeEEEEECCCchhHHHHHHHH-hhceeeeccCCHHHHHHHHHHHHc
Confidence 2455555433221110000000 001256899999999999888774
No 305
>PRK13558 bacterio-opsin activator; Provisional
Probab=44.44 E-value=70 Score=39.19 Aligned_cols=116 Identities=11% Similarity=0.131 Sum_probs=71.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.++|++|+++.........+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++.... ..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~---g~~~l~~l~~~~~--~~ 80 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFD---GLALLEAVRQTTA--VP 80 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCc---HHHHHHHHHhcCC--CC
Confidence 579999999999888888899999999999999999887654 4478888887654332 2234555544221 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchH--HHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS--MLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~--~l~~~l~~~l 705 (876)
+++++............. ..+...++.||.... .+...+...+
T Consensus 81 piI~lt~~~~~~~~~~al-~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 81 PVVVVPTAGDEAVARRAV-DADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred CEEEEECCCCHHHHHHHH-hcCcceEEeccchhHHHHHHHHHHHhh
Confidence 344443322211111111 124556888886543 4444444444
No 306
>PRK15029 arginine decarboxylase; Provisional
Probab=44.44 E-value=1.3e+02 Score=37.55 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=53.6
Q ss_pred cEEEEECCchh--------hHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcc-hhHHHHHHH
Q 002821 582 MKALVVDPRPI--------RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS-VSTLFVNNL 652 (876)
Q Consensus 582 ~~~lvvd~~~~--------~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~ 652 (876)
+++|+||++.. ........|+..|++|..+.+..+++..+... ..++++++|..+...+.. ....++..+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 46899999985 57788899999999999999999999998542 357899999766544332 112456666
Q ss_pred hh
Q 002821 653 RK 654 (876)
Q Consensus 653 ~~ 654 (876)
++
T Consensus 80 R~ 81 (755)
T PRK15029 80 HE 81 (755)
T ss_pred Hh
Confidence 65
No 307
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=44.44 E-value=4.2e+02 Score=28.29 Aligned_cols=97 Identities=22% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHHhHcCCEEEEE--cCHHHHHHHhCCCCCccEEEEeCCCCCCCHH-----HHHHHHHhhcccccccccccccchhh
Q 002821 744 VAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIEA 816 (876)
Q Consensus 744 vl~~~L~~~g~~v~~a--~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~g~~~~~~ 816 (876)
-+.+.|-+.||.|... .|..-|-++.. -. -.++|=+--|.-.|. ..++.|++
T Consensus 128 ~Aae~Lv~eGF~VlPY~~~D~v~a~rLed-~G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e------------------ 186 (267)
T CHL00162 128 KAAEFLVKKGFTVLPYINADPMLAKHLED-IG--CATVMPLGSPIGSGQGLQNLLNLQIIIE------------------ 186 (267)
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHHH-cC--CeEEeeccCcccCCCCCCCHHHHHHHHH------------------
Confidence 3556677889998854 45555544432 12 457777777776553 45666665
Q ss_pred hccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCee-----EeCCCCHHHHHHHHHh
Q 002821 817 YENVSNFHVPILAMTADVIQATYEECLRSGMDGY-----VSKPFEAEQLYREVSR 866 (876)
Q Consensus 817 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y-----l~KP~~~~~L~~~l~~ 866 (876)
...+|||.=.+-...++..++++.|+|+. |.|--++.++..+++.
T Consensus 187 -----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~ 236 (267)
T CHL00162 187 -----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKL 236 (267)
T ss_pred -----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHH
Confidence 34689998888889999999999999998 4576777777776653
No 308
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.99 E-value=88 Score=34.13 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=48.8
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+++-+||.+.+. ...|+|.+| +|+.-+=-++.+.+|+. .++ ..+..++..
T Consensus 202 IeVEv~tl~ea~eal~--~gaDiI~LD-nm~~e~vk~av~~~~~~----------------------~~~-v~ieaSGGI 255 (289)
T PRK07896 202 CEVEVDSLEQLDEVLA--EGAELVLLD-NFPVWQTQEAVQRRDAR----------------------APT-VLLESSGGL 255 (289)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEeC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 4556789999999884 458999999 44422222333333321 123 367789999
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...+..+.|+|.+.
T Consensus 256 ~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 256 TLDTAAAYAETGVDYLA 272 (289)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 309
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=43.63 E-value=3.3e+02 Score=26.77 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 002821 230 LAISTSIGILVIASLVGHIFQATVNR-----IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 293 (876)
Q Consensus 230 ~~~~~~~~~l~i~~l~~~~~~~~~~r-----~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRT 293 (876)
..+..++.++++++++.++++..+.. -..+........+.+.++++....-.+-++..-.|-..
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ 78 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDA 78 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555554443 33344444444444444444333333344444444333
No 310
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=43.61 E-value=4.2e+02 Score=30.90 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 002821 231 AISTSIGILVIASLVGHIFQATVNR-----IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMN 296 (876)
Q Consensus 231 ~~~~~~~~l~i~~l~~~~~~~~~~r-----~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~ 296 (876)
.+..++.++++++++.++++..+.. ..++.....+..+.+++++++...-.+-++....|-+.=+.
T Consensus 4 ~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~ 74 (445)
T PRK13428 4 FIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVE 74 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544433 33444444444444444444433333344444444443333
No 311
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=42.94 E-value=1.4e+02 Score=27.21 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.8
Q ss_pred CCCHHhHHHHHHcCCCeeEeCCC--CHHHHHHHHHh
Q 002821 833 DVIQATYEECLRSGMDGYVSKPF--EAEQLYREVSR 866 (876)
Q Consensus 833 ~~~~~~~~~~~~aG~d~yl~KP~--~~~~L~~~l~~ 866 (876)
....+....|+++|.+=|+.||+ +.+++.+.++.
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEA 108 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHH
Confidence 44467778899999999999998 77777766653
No 312
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=42.48 E-value=1.2e+02 Score=32.76 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=58.1
Q ss_pred EEEEeCCHHHHHH-HHHHHhH----cCCE---EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccc
Q 002821 732 ILIVDDNNVNLKV-AAAGLKR----YGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 803 (876)
Q Consensus 732 ILvVdDn~~n~~v-l~~~L~~----~g~~---v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~ 803 (876)
-+++=||....-. +...+++ .++. -+.+++-+|+.+++. ..+|+|++|-+-| -.=-++.+.++
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~--agaDiImLDNm~~-e~~~~av~~l~------ 230 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE--AGADIIMLDNMSP-EELKEAVKLLG------ 230 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH--cCCCEEEecCCCH-HHHHHHHHHhc------
Confidence 3444555544433 5555553 3542 346889999999884 4699999995433 11222222221
Q ss_pred cccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCee
Q 002821 804 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 850 (876)
Q Consensus 804 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y 850 (876)
...-.++-.|+....+...+..+.|+|-+
T Consensus 231 ------------------~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 231 ------------------LAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred ------------------cCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 01134778999999999999999999844
No 313
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=42.37 E-value=2.5e+02 Score=26.06 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhHcCCEEEEEc--CHHHHHHHhCCCCCccEEEEeCCCCCC-CHHHHHHHHHhh
Q 002821 740 VNLKVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEM-DGFEATKIIREM 799 (876)
Q Consensus 740 ~n~~vl~~~L~~~g~~v~~a~--~g~eA~~~~~~~~~~DlilmDi~MP~m-dG~e~~~~IR~~ 799 (876)
.....+..+|++.|+.+.... .-.+.++.+.....||+|.+.+.-+.. ...++++.||+.
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~ 65 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV 65 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHH
Confidence 345678889999998877654 344455555432679999999855444 356677788764
No 314
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=42.01 E-value=1.9e+02 Score=28.68 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=48.5
Q ss_pred CCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCC--------CCHHHHHHHHHhhcccccccccccccchhhhccCCCC
Q 002821 753 GAAVVC-VERGKKATELLMPPHQFDACFMDIQMPE--------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNF 823 (876)
Q Consensus 753 g~~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~ 823 (876)
+..+-. +.+..++.+... ..+|.|+.+---|. -.|.+..+++++. .
T Consensus 95 ~~~~g~~~~t~~~~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~ 149 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEE--LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-----------------------V 149 (196)
T ss_pred CCEEEeeCCCHHHHHHHhh--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----------------------C
Confidence 444333 345566665542 35899988643332 3467777777752 2
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
++||++.-+- ..+...++.++|++++..
T Consensus 150 ~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 150 EIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 5899888665 578899999999998754
No 315
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.99 E-value=1.1e+02 Score=24.94 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 002821 283 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 329 (876)
Q Consensus 283 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~ 329 (876)
-+...-||+.+=|+.|.|++++ ...++-.+|++.+....+...
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999885 223445677776666655543
No 316
>PRK10403 transcriptional regulator NarP; Provisional
Probab=41.77 E-value=2e+02 Score=28.37 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=70.1
Q ss_pred cEEEEECCchhhHHHHHHHHHH-hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~-~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++++++.........+.. .++.+. .+.+..+++..+.. ..++.+++|......+ ....+..++....
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---~~~~~~~l~~~~~-- 79 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMS---GLDTLNALRRDGV-- 79 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCc---HHHHHHHHHHhCC--
Confidence 5789999999888878888875 577764 57788888876543 3477888876554332 2223444443221
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
..+++++............ ...+...++.||+....+...+...+
T Consensus 80 ~~~ii~l~~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 80 TAQIIILTVSDASSDVFAL-IDAGADGYLLKDSDPEVLLEAIRAGA 124 (215)
T ss_pred CCeEEEEeCCCChHHHHHH-HHcCCCeEEecCCCHHHHHHHHHHHh
Confidence 2233333322111111111 12245678999999999888887765
No 317
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=41.44 E-value=1.6e+02 Score=35.87 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=60.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHH-HHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~e-A~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+..+.++|.|+...+.+ ++.|+.+...+-.+. .++.. .-++.|+++.-..=++. -..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~a-gi~~A~~vvv~~~d~~~-n~~i~~~ar~~-------- 488 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQT-SLQLVELVKEH-------- 488 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhc-CCCcCCEEEEEeCCHHH-HHHHHHHHHHh--------
Confidence 44689999998765444 457888877654443 34433 23468888876643332 25566677763
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
+++++|++-+. +.+...+..++|+|..+
T Consensus 489 --------------~p~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 --------------FPHLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred --------------CCCCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 35678888764 35667778899999764
No 318
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=41.13 E-value=3e+02 Score=28.59 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=53.3
Q ss_pred HHHHHhHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhh
Q 002821 745 AAAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEA 816 (876)
Q Consensus 745 l~~~L~~~g~~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~ 816 (876)
+...+++.+..+.. +.+..++..... ...|.|..+-.-++ ...++.++++|+.
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~----------------- 154 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA----------------- 154 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-----------------
Confidence 33445556655444 345555544432 45788877542111 2457778888752
Q ss_pred hccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeC
Q 002821 817 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 853 (876)
Q Consensus 817 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 853 (876)
..+||++.-+-...++..+++++|+|+.+.-
T Consensus 155 ------~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 ------VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ------hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 2479998777666789999999999987653
No 319
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.01 E-value=2.6e+02 Score=32.35 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=60.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHh----HcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLK----RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHN 802 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~----~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~ 802 (876)
|++|++++-+. .|......|+ ..|..+..+.+..++.+.+. ...+|+||+|. |+..- .+.++.++++-..
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGSELILIDT--AGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCCCEEEEeC--CCCCccCHHHHHHHHHHHHh
Confidence 56898888776 3333344444 44666665655666666664 36799999996 33211 1333444332110
Q ss_pred ccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHH----cCCCeeEeCCC
Q 002821 803 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPF 855 (876)
Q Consensus 803 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----aG~d~yl~KP~ 855 (876)
. ....+.-.+++++|....++.....+ .|.++.|.==+
T Consensus 328 ~---------------~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKL 369 (432)
T PRK12724 328 F---------------GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKL 369 (432)
T ss_pred h---------------cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 0 00112346788888888766666554 57777654333
No 320
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.97 E-value=2e+02 Score=31.25 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=47.9
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+++-+++.+.+. ..+|+|++|- |+.-+=-++.+.++. ..+|..++..
T Consensus 196 IeVEv~slee~~ea~~--~gaDiImLDn-~s~e~l~~av~~~~~--------------------------~~~leaSGgI 246 (281)
T PRK06543 196 VEVEVDRLDQIEPVLA--AGVDTIMLDN-FSLDDLREGVELVDG--------------------------RAIVEASGNV 246 (281)
T ss_pred EEEEeCCHHHHHHHHh--cCCCEEEECC-CCHHHHHHHHHHhCC--------------------------CeEEEEECCC
Confidence 3457899999999874 4689999995 333333334443331 1268889999
Q ss_pred CHHhHHHHHHcCCCee
Q 002821 835 IQATYEECLRSGMDGY 850 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~y 850 (876)
..+...+..+.|+|-.
T Consensus 247 ~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 247 NLNTVGAIASTGVDVI 262 (281)
T ss_pred CHHHHHHHHhcCCCEE
Confidence 9999999999999854
No 321
>PRK00811 spermidine synthase; Provisional
Probab=40.81 E-value=1.3e+02 Score=32.75 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=40.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC------CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG------AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE 786 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g------~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~ 786 (876)
.+|.+||=++...++++..|...+ -.+ ....|+.+-+.. ....||+|++|.--|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 489999999999999999887532 123 346777776654 2467999999986664
No 322
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=40.66 E-value=1.8e+02 Score=29.26 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=47.8
Q ss_pred EEEcCHHHHHHHhCCCCCccEEEEeCCCCC--------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEE
Q 002821 757 VCVERGKKATELLMPPHQFDACFMDIQMPE--------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL 828 (876)
Q Consensus 757 ~~a~~g~eA~~~~~~~~~~DlilmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pII 828 (876)
..+.+..++.+.. +...|+|+.+-..|. ..|++..+.+.+. ...+||+
T Consensus 101 ~s~h~~~e~~~a~--~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~----------------------~~~~pv~ 156 (196)
T TIGR00693 101 VSTHNLEELAEAE--AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT----------------------SIDIPIV 156 (196)
T ss_pred EeCCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------cCCCCEE
Confidence 3455666666544 346899987654442 2478888888752 1247888
Q ss_pred EEcCCCCHHhHHHHHHcCCCeeE
Q 002821 829 AMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 829 alTa~~~~~~~~~~~~aG~d~yl 851 (876)
++-+ ...+...+++++|++++.
T Consensus 157 a~GG-I~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 157 AIGG-ITLENAAEVLAAGADGVA 178 (196)
T ss_pred EECC-cCHHHHHHHHHcCCCEEE
Confidence 8755 467888899999999874
No 323
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=40.43 E-value=1.1e+02 Score=31.12 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEe-CCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV-SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
...+++++++.+.++......|...|+++.-+ .+...+..... ....|++++|.+....+... .+...+..
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~--~~~pDvVildie~p~rd~~e------~~~~~~~~ 75 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE--RLQPDVVILDIEMPRRDIIE------ALLLASEN 75 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH--hcCCCEEEEecCCCCccHHH------HHHHhhcC
Confidence 34789999999999998888888888875543 33333222222 24567777777665554221 22222233
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
..+.++++.....+........ .+...++.||+....+...|.-+.
T Consensus 76 ~~~piv~lt~~s~p~~i~~a~~-~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 76 VARPIVALTAYSDPALIEAAIE-AGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred CCCCEEEEEccCChHHHHHHHH-cCCeEEEecCcchhhhhHHHHHHH
Confidence 3444444444333222222222 266789999999999888776554
No 324
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=39.89 E-value=1.6e+02 Score=22.22 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 229 LLAISTSIGILVIASLVGHIFQATVNRIA 257 (876)
Q Consensus 229 ~~~~~~~~~~l~i~~l~~~~~~~~~~r~~ 257 (876)
+..+..++.++.+++.+|..++..+..++
T Consensus 5 lt~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 5 LTTIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333444444445555555554443
No 325
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=39.89 E-value=4.4e+02 Score=27.15 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 002821 229 LLAISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMN 296 (876)
Q Consensus 229 ~~~~~~~~~~l~i~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~ 296 (876)
|..+..++.++++++++.++++..+. |...+........+.+++++.....-.+-++..-.|-+.=++
T Consensus 49 ~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~ 121 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID 121 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555554443 333444444444444444444333333334444444443333
No 326
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.85 E-value=95 Score=33.87 Aligned_cols=70 Identities=23% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCC
Q 002821 756 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 835 (876)
Q Consensus 756 v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 835 (876)
-+.+.|-+||.+.+. ...|+|.+|- |..-+=-++.+.+|+. .+++| +..++...
T Consensus 200 ~VEv~tleea~eA~~--~GaD~I~LDn-~~~e~l~~av~~~~~~----------------------~~~i~-leAsGGIt 253 (288)
T PRK07428 200 EVETETLEQVQEALE--YGADIIMLDN-MPVDLMQQAVQLIRQQ----------------------NPRVK-IEASGNIT 253 (288)
T ss_pred EEECCCHHHHHHHHH--cCCCEEEECC-CCHHHHHHHHHHHHhc----------------------CCCeE-EEEECCCC
Confidence 345789999999884 4689999993 3222222233333321 23455 45677788
Q ss_pred HHhHHHHHHcCCCeeE
Q 002821 836 QATYEECLRSGMDGYV 851 (876)
Q Consensus 836 ~~~~~~~~~aG~d~yl 851 (876)
.+...+..+.|+|...
T Consensus 254 ~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 254 LETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999999764
No 327
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=39.73 E-value=2.6e+02 Score=28.99 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=43.8
Q ss_pred HHHHHhCCCCCcc-EEEEeCCCCCC---CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhH
Q 002821 764 KATELLMPPHQFD-ACFMDIQMPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 839 (876)
Q Consensus 764 eA~~~~~~~~~~D-lilmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~ 839 (876)
+.++.+.. ...| ++++|+..-++ --+++++++++. ..+||++-.+-.+.++.
T Consensus 150 ~~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvi~~GGi~~~~di 205 (234)
T cd04732 150 ELAKRFEE-LGVKAIIYTDISRDGTLSGPNFELYKELAAA-----------------------TGIPVIASGGVSSLDDI 205 (234)
T ss_pred HHHHHHHH-cCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----------------------cCCCEEEecCCCCHHHH
Confidence 44444432 3344 56777643222 226777887752 25899999988889999
Q ss_pred HHHHHcCCCeeEe
Q 002821 840 EECLRSGMDGYVS 852 (876)
Q Consensus 840 ~~~~~aG~d~yl~ 852 (876)
.++++.|+++.+.
T Consensus 206 ~~~~~~Ga~gv~v 218 (234)
T cd04732 206 KALKELGVAGVIV 218 (234)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999753
No 328
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=39.72 E-value=2.3e+02 Score=29.93 Aligned_cols=96 Identities=21% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHHHHHHhHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH-----HHHHHHHhhcccccccccccccchh
Q 002821 743 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIE 815 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~g~~~~~ 815 (876)
-.+.+.|-+.||.|.. ..|..-|-++.. -. -.++|=+--|.-.|. ..++.|++.
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~D~v~akrL~d-~G--caavMPlgsPIGSg~Gi~n~~~l~~i~~~---------------- 173 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTDDPVLAKRLED-AG--CAAVMPLGSPIGSGRGIQNPYNLRIIIER---------------- 173 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHHHHHHH-TT---SEBEEBSSSTTT---SSTHHHHHHHHHH----------------
T ss_pred HHHHHHHHHCCCEEeecCCCCHHHHHHHHH-CC--CCEEEecccccccCcCCCCHHHHHHHHHh----------------
Confidence 4456677889999885 445555554432 11 336777778877663 456677652
Q ss_pred hhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe-----CCCCHHHHHHHH
Q 002821 816 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREV 864 (876)
Q Consensus 816 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l 864 (876)
..+|||+=.+-..+.+..++++.|+|+.+. |--++-.+.++.
T Consensus 174 -------~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af 220 (247)
T PF05690_consen 174 -------ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAF 220 (247)
T ss_dssp -------GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred -------cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHH
Confidence 268999988888999999999999999974 444554444444
No 329
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=39.09 E-value=1.4e+02 Score=27.36 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=42.7
Q ss_pred eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCC-HHHHHHHHHh
Q 002821 736 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-GFEATKIIRE 798 (876)
Q Consensus 736 dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~md-G~e~~~~IR~ 798 (876)
|-++.....+..+|++.|+++.... .-.+.++.+. ...||+|.+.+.+.... .++.++++++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-EEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-HcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5566777889999999999998763 3344455553 46799999998775532 3444555554
No 330
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.94 E-value=2.2e+02 Score=30.75 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=47.9
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+++-+||.+.+. ..+|+|.+|=. .++.++++-++.+. ..+++ +|..++..
T Consensus 185 I~VEv~tleea~~A~~--~GaDiI~LDn~-----~~e~l~~~v~~~~~------------------~~~~~-~ieAsGgI 238 (273)
T PRK05848 185 IEIECESLEEAKNAMN--AGADIVMCDNM-----SVEEIKEVVAYRNA------------------NYPHV-LLEASGNI 238 (273)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEECCC-----CHHHHHHHHHHhhc------------------cCCCe-EEEEECCC
Confidence 3446789999999884 46899998852 23444444332110 11233 57788889
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...++.+.|+|.+.
T Consensus 239 t~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 239 TLENINAYAKSGVDAIS 255 (273)
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 99999999999999764
No 331
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=38.06 E-value=4.2e+02 Score=26.39 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 002821 234 TSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 293 (876)
Q Consensus 234 ~~~~~l~i~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRT 293 (876)
.++.++++++++.++++..+. |-..+........+.+.++++....-.+-++..-.|...
T Consensus 24 ~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 88 (173)
T PRK13453 24 TVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQK 88 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554443 333344444444444444433333223334444444433
No 332
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.67 E-value=81 Score=33.94 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCC------CHHhHHHHHHcCCCeeEeCCCCHHHHHHHH
Q 002821 823 FHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREV 864 (876)
Q Consensus 823 ~~~pIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l 864 (876)
..+|+++||=.. .+....+|.++|+|+.+.--+..++....+
T Consensus 90 ~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~ 137 (263)
T CHL00200 90 IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLI 137 (263)
T ss_pred CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHH
Confidence 358988888653 356788999999999999876666654433
No 333
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=37.62 E-value=1.3e+02 Score=31.79 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=39.2
Q ss_pred ccEEEEeCCCCCC--CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 775 FDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 775 ~DlilmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.|.|-.|...|+- --++.+++|++. ...+|||+.-.-.+.++..+++++|+|+...
T Consensus 162 ad~i~Vd~~~~g~~~a~~~~I~~i~~~----------------------~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 162 FDGIHVDAMYPGKPYADMDLLKILSEE----------------------FNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCEEEEeeCCCCCchhhHHHHHHHHHh----------------------cCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 4444445444442 237777777752 1248999988888899999999999998753
No 334
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=37.08 E-value=1.2e+02 Score=31.63 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=46.3
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHh
Q 002821 763 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 838 (876)
Q Consensus 763 ~eA~~~~~~~~~~D-lilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~ 838 (876)
.+..+.+. ...++ ++++|+..-++ .| ++.++++++. ..+|||+-.+-.+.++
T Consensus 149 ~e~~~~~~-~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----------------------~~ipvia~GGi~~~~d 204 (233)
T PRK00748 149 EDLAKRFE-DAGVKAIIYTDISRDGTLSGPNVEATRELAAA-----------------------VPIPVIASGGVSSLDD 204 (233)
T ss_pred HHHHHHHH-hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444442 23456 78888754322 34 6778888752 2489999998899999
Q ss_pred HHHHHHcC-CCeeEe
Q 002821 839 YEECLRSG-MDGYVS 852 (876)
Q Consensus 839 ~~~~~~aG-~d~yl~ 852 (876)
..++++.| +++.+.
T Consensus 205 i~~~~~~g~~~gv~v 219 (233)
T PRK00748 205 IKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHcCCccEEEE
Confidence 99999998 999874
No 335
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=36.31 E-value=1.2e+02 Score=32.98 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=50.5
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+.+-++|.+.+. ..+|+|++| +|+.-+=-++.+.+++. .++ .++..++..
T Consensus 192 IeVEv~tleqa~ea~~--agaDiI~LD-n~~~e~l~~av~~~~~~----------------------~~~-~~leaSGGI 245 (284)
T PRK06096 192 IVVEADTPKEAIAALR--AQPDVLQLD-KFSPQQATEIAQIAPSL----------------------APH-CTLSLAGGI 245 (284)
T ss_pred EEEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHhhcc----------------------CCC-eEEEEECCC
Confidence 4556789999999884 458999999 45444444444444421 112 468899999
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...+..+.|+|-..
T Consensus 246 ~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 246 NLNTLKNYADCGIRLFI 262 (284)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 336
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=35.96 E-value=3.9e+02 Score=28.41 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=58.7
Q ss_pred cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhH
Q 002821 760 ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 839 (876)
Q Consensus 760 ~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~ 839 (876)
......++++. ...||.|+.|++=-.+|--++...|+..+. .....++=....+....
T Consensus 20 ~~~p~~~e~~~-~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~---------------------~g~~~~VRv~~~~~~~i 77 (249)
T TIGR02311 20 LADPYAAEICA-GAGFDWLLIDGEHAPNDVRTILSQLQALAP---------------------YPSSPVVRPAIGDPVLI 77 (249)
T ss_pred CCCcHHHHHHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHh---------------------cCCCcEEECCCCCHHHH
Confidence 34445566554 346999999999888888888887876421 11233333445567789
Q ss_pred HHHHHcCCCeeEe-CCCCHHHHHHHHHh
Q 002821 840 EECLRSGMDGYVS-KPFEAEQLYREVSR 866 (876)
Q Consensus 840 ~~~~~aG~d~yl~-KP~~~~~L~~~l~~ 866 (876)
.+++++|+++.+. |--+.++..+.++.
T Consensus 78 ~~~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 78 KQLLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred HHHhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 9999999998865 55677777777664
No 337
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.83 E-value=4.3e+02 Score=28.51 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=56.0
Q ss_pred CeEEEEeCCHH---HHHHHHHHHhHcCCEEEEEcCHH---HHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhhcc
Q 002821 730 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGK---KATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREMEH 801 (876)
Q Consensus 730 ~~ILvVdDn~~---n~~vl~~~L~~~g~~v~~a~~g~---eA~~~~~~~~~~DlilmDi~MP~md--G~e~~~~IR~~~~ 801 (876)
.++.+++-+.. ....++...+..|+.+..+.+.. ++++.+.....+|+||+|. |+.. .-+.++++++...
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt--~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCcCCHHHHHHHHHHHh
Confidence 46666665432 22334455556788888776653 3444443334699999997 3332 2334444444211
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHH----HHcCCCeeEeCCCC
Q 002821 802 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC----LRSGMDGYVSKPFE 856 (876)
Q Consensus 802 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~----~~aG~d~yl~KP~~ 856 (876)
. ..+.-.+++++|.....+..+. -..+.++.|.-=+|
T Consensus 182 ~------------------~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 182 Q------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred h------------------hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 0 1122346778776555444332 23577776543333
No 338
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=35.64 E-value=1.5e+02 Score=20.43 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=36.3
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEee
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 634 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d 634 (876)
+++++++++.........+...|+.+....+...+...+... .++.++++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~ 51 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLD 51 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEe
Confidence 578888888888888888889999988888887777655332 24444443
No 339
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=35.56 E-value=93 Score=31.48 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.3
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
|||||-..-.-.-+...|++.|+.+.+..+....++.+. ...||.|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-ALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-hcCCCEEEE
Confidence 899999998888899999999999888775432222232 235785554
No 340
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=35.49 E-value=2.8e+02 Score=28.70 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=70.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
..+++++|++|+.+...+..|. .++. +..+.+..+++..+. .++++++|..+...++ .......++... .
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G--~~~~~~~i~~~~--p 80 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKL--IHYWQDTLSRKN--N 80 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccH--HHHHHHHHHHhC--C
Confidence 4569999999999988888887 4454 345567777766432 3789999988754332 111122333221 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++++...... .........+...++.|+.....+..+++.++.
T Consensus 81 ~~~vvvlt~~~~~-~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 81 NIKILLLNTPEDY-PYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred CCcEEEEECCchh-HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 2455555543221 111111112556789999999999999988764
No 341
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.46 E-value=4.6e+02 Score=26.09 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002821 237 GILVIASLVGHIFQATV 253 (876)
Q Consensus 237 ~~l~i~~l~~~~~~~~~ 253 (876)
.++++++++.++++..+
T Consensus 27 ~Flil~~lL~~~l~kpi 43 (175)
T PRK14472 27 TFVIVLLILKKIAWGPI 43 (175)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 33334444444444433
No 342
>PRK11677 hypothetical protein; Provisional
Probab=35.28 E-value=2.1e+02 Score=27.49 Aligned_cols=9 Identities=11% Similarity=0.530 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 002821 241 IASLVGHIF 249 (876)
Q Consensus 241 i~~l~~~~~ 249 (876)
+.+++|+++
T Consensus 12 vG~iiG~~~ 20 (134)
T PRK11677 12 VGIIIGAVA 20 (134)
T ss_pred HHHHHHHHH
Confidence 333444443
No 343
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.86 E-value=3.1e+02 Score=27.81 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=54.5
Q ss_pred EEEeCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhccc
Q 002821 733 LIVDDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHN 802 (876)
Q Consensus 733 LvVdDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~ 802 (876)
.+-++.+.........+++.|..+... .+..+.++.+. ...|.|+.+-.-|+..| ++.++++|++-.+
T Consensus 84 ~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~--~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~ 161 (210)
T TIGR01163 84 TVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVL--PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDE 161 (210)
T ss_pred EEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH--hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHh
Confidence 333333333334446666677654432 34566666653 23577766554454444 3444555543210
Q ss_pred ccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeC
Q 002821 803 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 853 (876)
Q Consensus 803 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 853 (876)
..+++||++ .+....+...++.+.|+|.++.-
T Consensus 162 ------------------~~~~~~i~v-~GGI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 162 ------------------NGLSILIEV-DGGVNDDNARELAEAGADILVAG 193 (210)
T ss_pred ------------------cCCCceEEE-ECCcCHHHHHHHHHcCCCEEEEC
Confidence 123467644 44556788889999999987543
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=34.54 E-value=3.8e+02 Score=28.91 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHhHcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHH
Q 002821 729 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDG--FEATKII 796 (876)
Q Consensus 729 ~~~ILvVdDn~~---n~~vl~~~L~~~g~~v~~a~~g-------~eA~~~~~~~~~~DlilmDi~MP~mdG--~e~~~~I 796 (876)
+++|+++|-+.. ...-+....++.|..+.....+ .++++... ...||+||+|. |+... -....++
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~-~~~~D~ViIDT--~G~~~~d~~~~~el 176 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK-ARNIDVVLIDT--AGRLQNKVNLMDEL 176 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH-HCCCCEEEEeC--CCCCcchHHHHHHH
Confidence 568999996642 2344555566777666554333 13333332 35699999997 33332 2333344
Q ss_pred HhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHH----cCCCeeEe
Q 002821 797 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVS 852 (876)
Q Consensus 797 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----aG~d~yl~ 852 (876)
+++..-.... ....++-.++++.+....+....+.. .|.++.|.
T Consensus 177 ~~~~~~~~~~------------~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 177 KKIKRVIKKV------------DKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHhcc------------cCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 4321100000 00123455788888766655444332 56777654
No 345
>PRK14974 cell division protein FtsY; Provisional
Probab=34.53 E-value=3.7e+02 Score=30.01 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHhHcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHH
Q 002821 729 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMD--GFEATKII 796 (876)
Q Consensus 729 ~~~ILvVdDn~---~n~~vl~~~L~~~g~~v~~a~~g-------~eA~~~~~~~~~~DlilmDi~MP~md--G~e~~~~I 796 (876)
+.+|++++-+. -....+.......|..+.....| .+|++... ...+|+||+|-- +.. -.+...++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~-~~~~DvVLIDTa--Gr~~~~~~lm~eL 244 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK-ARGIDVVLIDTA--GRMHTDANLMDEL 244 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH-hCCCCEEEEECC--CccCCcHHHHHHH
Confidence 45788887663 22334455556677766655443 24444443 346899999973 332 23445555
Q ss_pred HhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHH----HcCCCeeEeCCCC
Q 002821 797 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 856 (876)
Q Consensus 797 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~aG~d~yl~KP~~ 856 (876)
+.+... ..++.-++++.|....+....+. ..|.++.|.==++
T Consensus 245 ~~i~~~------------------~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 245 KKIVRV------------------TKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHHHh------------------hCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 543210 12344567777765544443332 3688887653333
No 346
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=33.64 E-value=2.9e+02 Score=30.39 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=58.8
Q ss_pred HHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC---C--CCCCHHHHHHHHHhhcccccccccccccchhhhc
Q 002821 745 AAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ---M--PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 818 (876)
Q Consensus 745 l~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~---M--P~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~ 818 (876)
+-..|+..|..|. .+.+.++|..+.. ...|.|+..-. . ....-+++++++++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~--~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK--AGADAVIAEGMESGGHIGELTTMALVPQVVDA------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH--cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-------------------
Confidence 5566777787654 4677778776653 46899887432 1 122347778888752
Q ss_pred cCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 819 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 819 ~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.++|||+--+-.+.++...++..|+++...
T Consensus 160 ----~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 ----VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 248999988888889999999999998753
No 347
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.58 E-value=4.5e+02 Score=30.31 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHhHcCCEEEEEcCHHHH---HHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhc
Q 002821 729 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG--FEATKIIREME 800 (876)
Q Consensus 729 ~~~ILvVdDn~~n---~~vl~~~L~~~g~~v~~a~~g~eA---~~~~~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~ 800 (876)
++++++++-++.- ..-++..-+..|+.+..+.+..+. ++.+.....+|+||+|. |+.+- .+.++++++.-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT--aGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETM 346 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC--ccccCcCHHHHHHHHHHH
Confidence 5678888876532 223344444567887777665544 33333223699999996 33322 33344444421
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHH----HcCCCeeEeCCCC
Q 002821 801 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 856 (876)
Q Consensus 801 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~aG~d~yl~KP~~ 856 (876)
.. ..++-.+++++|.....+..+.. ..|.+++|.==+|
T Consensus 347 k~------------------~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 347 GQ------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred hh------------------cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 10 12233466677765544432222 4588887654443
No 348
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=33.51 E-value=2.9e+02 Score=29.32 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcC-CCeeEe------CCCCHHHHHHHHH
Q 002821 824 HVPILAMTADVIQATYEECLRSG-MDGYVS------KPFEAEQLYREVS 865 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG-~d~yl~------KP~~~~~L~~~l~ 865 (876)
.+|||+.-+-.+.++..++++.| +++.+. +=++.+++...++
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 58999999999999999999988 998543 4566666665554
No 349
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.29 E-value=4.7e+02 Score=29.03 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHHhHcCCEE--EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHhhcccccccccccccchhhhcc
Q 002821 747 AGLKRYGAAV--VCVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIREMEHNFNNRIRRGEVSIEAYEN 819 (876)
Q Consensus 747 ~~L~~~g~~v--~~a~~g~eA~~~~~~~~~~DlilmDi~MP~md-----G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~ 819 (876)
+.|-+.|+.| .|++|...|-.+.. -.+ +.+|=+-=|.-. --+.++.+++.
T Consensus 191 ~~L~~~Gf~v~~yc~~d~~~a~~l~~--~g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~-------------------- 247 (326)
T PRK11840 191 EILVKEGFQVMVYCSDDPIAAKRLED--AGA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG-------------------- 247 (326)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHh--cCC-EEEeeccccccCCCCCCCHHHHHHHHHc--------------------
Confidence 3344569987 56777777766553 233 444433223222 24455666542
Q ss_pred CCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE-----eCCCCHHHHHHHHH
Q 002821 820 VSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVS 865 (876)
Q Consensus 820 ~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~ 865 (876)
..+|||.=.+-...++...+++.|+|+.+ .|-=++-.+.++.+
T Consensus 248 ---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 248 ---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred ---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 35899988888889999999999999985 45556666665554
No 350
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=33.13 E-value=1.7e+02 Score=31.63 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCcEE--EEcCCCCHHhHHHHHHcCCCeeE
Q 002821 824 HVPIL--AMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 824 ~~pII--alTa~~~~~~~~~~~~aG~d~yl 851 (876)
.+||| +..+-..+++..+++++|+++++
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVa 223 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVF 223 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 48997 77776699999999999999985
No 351
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=33.11 E-value=39 Score=40.51 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEeeCCCCChhhHhhhcccccc
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQ 505 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q 505 (876)
.|+|.|+|.||++...+-+-.+++.
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhh
Confidence 3899999999999887776555543
No 352
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=33.09 E-value=1.7e+02 Score=31.20 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=41.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC--EEE-EEcCHHHHHHHhCC----CCCccEEEEeCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP----PHQFDACFMDIQ 783 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eA~~~~~~----~~~~DlilmDi~ 783 (876)
.+|.-+|=++.....++..+++.|+ .|. ...+..+.+..+.. ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4899999999999999999999985 343 34566666665532 257999999986
No 353
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=32.69 E-value=1.3e+02 Score=30.55 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=39.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCE--EE-EEcCHHHHHHHhCC-CCCccEEEEeCCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP-PHQFDACFMDIQM 784 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eA~~~~~~-~~~~DlilmDi~M 784 (876)
.++..||.++.....++.-++..|.. +. ...|..+++..+.. ...||+|++|-=.
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCC
Confidence 37999999999999999999888763 33 34455556554422 2348999999644
No 354
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=32.56 E-value=2.5e+02 Score=27.48 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=39.9
Q ss_pred CCccEEEEeCCCCCCCHH-------HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHc
Q 002821 773 HQFDACFMDIQMPEMDGF-------EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 845 (876)
Q Consensus 773 ~~~DlilmDi~MP~mdG~-------e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~a 845 (876)
...|.+.++-..+...+. ...+.++. ...+||++..+-...++..+++++
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~pi~~~GGi~~~~~~~~~~~~ 191 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----------------------GSKVPVIAGGGINDPEDAAEALAL 191 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----------------------cCCCCEEEECCCCCHHHHHHHHHh
Confidence 457999988877754432 22333332 235899988777776999999999
Q ss_pred CCCeeEe
Q 002821 846 GMDGYVS 852 (876)
Q Consensus 846 G~d~yl~ 852 (876)
|+|.+..
T Consensus 192 Gad~v~v 198 (200)
T cd04722 192 GADGVIV 198 (200)
T ss_pred CCCEEEe
Confidence 9998763
No 355
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.08 E-value=1.3e+02 Score=33.52 Aligned_cols=67 Identities=13% Similarity=0.024 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCCH-HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHH
Q 002821 762 GKKATELLMPPHQFDACFMDIQMPEMDG-FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 840 (876)
Q Consensus 762 g~eA~~~~~~~~~~DlilmDi~MP~mdG-~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 840 (876)
.+++.+++...-..|+|.+|+.-+..+. .|++++||+. .+.+|||+=.- .+.++..
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~----------------------~p~~~vi~g~V-~t~e~a~ 155 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH----------------------LPETFVIAGNV-GTPEAVR 155 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh----------------------CCCCeEEEEec-CCHHHHH
Confidence 3556666532113599999998865443 4567777762 23577777322 2678889
Q ss_pred HHHHcCCCeeE
Q 002821 841 ECLRSGMDGYV 851 (876)
Q Consensus 841 ~~~~aG~d~yl 851 (876)
.+.++|+|...
T Consensus 156 ~l~~aGad~i~ 166 (326)
T PRK05458 156 ELENAGADATK 166 (326)
T ss_pred HHHHcCcCEEE
Confidence 99999999865
No 356
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.01 E-value=5.8e+02 Score=26.25 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 255 RIAKVEEDYHGMMELKKKAEAADV 278 (876)
Q Consensus 255 r~~~~~~~~~~~~~~~~~ae~a~~ 278 (876)
|..++..++.+..+.+.+++....
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~~~ 108 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAAVA 108 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444444433
No 357
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=31.99 E-value=57 Score=33.32 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=37.1
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
|||||.+.-.-.-+...|++.|+++....+.+..++.+. ...||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-NMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-hCCCCEEEE
Confidence 899999998888899999999999988877643333332 246888775
No 358
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=31.95 E-value=72 Score=34.89 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCe------eEeCCCCHHHHHHHHHhhCCCC
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDG------YVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~------yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+|||+.-+-.+.++..+++.+|+|. ++.+|.-..++.+.+.+|+..+
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 48999999999999999999999995 6789988888888888887643
No 359
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=31.57 E-value=2.1e+02 Score=30.17 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCeEEEE------eCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIV------DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvV------dDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
++||++| +|...........+++.|+++.......+..+.+. ..|+|++ ++-|-+.+++.+|.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~---~ad~I~v----~GGnt~~l~~~l~~ 99 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE---NAEAIFV----GGGNTFQLLKQLYE 99 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh---cCCEEEE----CCccHHHHHHHHHH
Confidence 3577776 44445556788999999999998887777777663 4688875 77888888888775
No 360
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=31.22 E-value=2.8e+02 Score=30.28 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCe------eEeCCCCHHHHHHHHHhhCCCC
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDG------YVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~------yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+|||+..+-.+.++..+++.+|+|. ++..|.-..++.+.+.+|+..+
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999974 3557888888888888887643
No 361
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=30.74 E-value=2.8e+02 Score=34.52 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=73.0
Q ss_pred HHHHHHHhHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCC-C----CCHHHHHHHHHhhcccccccccccccchh
Q 002821 743 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMP-E----MDGFEATKIIREMEHNFNNRIRRGEVSIE 815 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~MP-~----mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 815 (876)
......|++.|+.+.. +.+|...+..+. .-++|.|=+|-.+= . -....+++.|..+-+
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~-~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 745 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV-SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQ-------------- 745 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh-hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHH--------------
Confidence 3455578889998866 567888888774 46799999996441 1 112334454443221
Q ss_pred hhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCC----eeEeCCCCHHHHHHHHHhhCC
Q 002821 816 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 816 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..++.+| .++-.+.+....+.+.|+| .|+.||...++|..-|++|.+
T Consensus 746 ------~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~~ 796 (799)
T PRK11359 746 ------SLNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLP 796 (799)
T ss_pred ------HCCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhccc
Confidence 1234544 5677778888889999998 468999999999999988854
No 362
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=30.36 E-value=4.1e+02 Score=26.79 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=49.6
Q ss_pred HHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhcccccccccccccch
Q 002821 745 AAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSI 814 (876)
Q Consensus 745 l~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~ 814 (876)
....+++.|..+.... +..+.++.+. .. .|.++.+...|+-+| .+..+++|++-.
T Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~------------- 161 (211)
T cd00429 97 TIQLIKELGMKAGVALNPGTPVEVLEPYL-DE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIP------------- 161 (211)
T ss_pred HHHHHHHCCCeEEEEecCCCCHHHHHHHH-hh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHH-------------
Confidence 3445556676543322 2344455443 22 688877765566544 344455554311
Q ss_pred hhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 815 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 815 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
...+++||++ .+....+...++.++|+|+++.
T Consensus 162 -----~~~~~~pi~v-~GGI~~env~~~~~~gad~iiv 193 (211)
T cd00429 162 -----ENNLNLLIEV-DGGINLETIPLLAEAGADVLVA 193 (211)
T ss_pred -----hcCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 0123467654 4456678899999999998875
No 363
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.23 E-value=3.8e+02 Score=30.96 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=58.6
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHH--HHHHHHHhhcccc
Q 002821 729 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF--EATKIIREMEHNF 803 (876)
Q Consensus 729 ~~~ILvVdDn~~n---~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~--e~~~~IR~~~~~~ 803 (876)
+++|.+|+-++.- ...+..+-+..|..+..+.+..+....+..-..+|+||+|. |++... ..+..++++-..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~- 327 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEF- 327 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhc-
Confidence 4689999887732 12233333446777777777665544443334699999996 333322 223344332110
Q ss_pred cccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHH----HcCCCeeEeCCCC
Q 002821 804 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 856 (876)
Q Consensus 804 ~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~----~aG~d~yl~KP~~ 856 (876)
...+.-..+++++.....+..+.. ..|.+.+|.--++
T Consensus 328 ----------------~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 328 ----------------SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred ----------------cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 001123367788877766665543 3466666543343
No 364
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.22 E-value=3.5e+02 Score=30.93 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=40.6
Q ss_pred CCeEEEEeC-CHHHHHHHHHHHhHcCCEEEEEcCH--HHHHHHhCCCCCccEEEEeC
Q 002821 729 GRKILIVDD-NNVNLKVAAAGLKRYGAAVVCVERG--KKATELLMPPHQFDACFMDI 782 (876)
Q Consensus 729 ~~~ILvVdD-n~~n~~vl~~~L~~~g~~v~~a~~g--~eA~~~~~~~~~~DlilmDi 782 (876)
|-+||+.+| ----++.+..+|+++|.+|..+..+ .+..+.+. +.+.++|++.-
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~-~~~tk~v~lEt 157 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIK-EPNTKLVFLET 157 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhc-ccCceEEEEeC
Confidence 568999988 5567889999999999999988744 44455554 24689999884
No 365
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=29.93 E-value=1.8e+02 Score=29.90 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeE--eCCCCHHHHHHHHHh
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYV--SKPFEAEQLYREVSR 866 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl--~KP~~~~~L~~~l~~ 866 (876)
.+||++...-.+....+.|.++|+|+.+ ..-+..+.+...+.+
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 5899987655666688999999999997 333333555544443
No 366
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=29.83 E-value=5.1e+02 Score=24.87 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 231 AISTSIGILVIASLVGHIFQATVNR 255 (876)
Q Consensus 231 ~~~~~~~~l~i~~l~~~~~~~~~~r 255 (876)
.+..++.++++++++..+++..+..
T Consensus 10 ~~~qli~Flil~~~l~kfl~kPi~~ 34 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYKPLLK 34 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555443
No 367
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.83 E-value=3.4e+02 Score=29.67 Aligned_cols=66 Identities=17% Similarity=0.016 Sum_probs=46.2
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCC
Q 002821 756 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 835 (876)
Q Consensus 756 v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 835 (876)
.+.+++-+||.+.+. ...|+|++|-+-| -+=-++.+.++. -.++..++...
T Consensus 201 eVEv~tleea~~a~~--agaDiImLDnmsp-e~l~~av~~~~~--------------------------~~~leaSGGI~ 251 (290)
T PRK06559 201 EVEVESLAAAEEAAA--AGADIIMLDNMSL-EQIEQAITLIAG--------------------------RSRIECSGNID 251 (290)
T ss_pred EEECCCHHHHHHHHH--cCCCEEEECCCCH-HHHHHHHHHhcC--------------------------ceEEEEECCCC
Confidence 445789999999884 4589999995433 222233332221 24678899999
Q ss_pred HHhHHHHHHcCCCee
Q 002821 836 QATYEECLRSGMDGY 850 (876)
Q Consensus 836 ~~~~~~~~~aG~d~y 850 (876)
.+...+..+.|+|-.
T Consensus 252 ~~ni~~yA~tGVD~I 266 (290)
T PRK06559 252 MTTISRFRGLAIDYV 266 (290)
T ss_pred HHHHHHHHhcCCCEE
Confidence 999999999999854
No 368
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=29.72 E-value=2.9e+02 Score=27.56 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHhhcccccccccccccchhh
Q 002821 744 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIREMEHNFNNRIRRGEVSIEA 816 (876)
Q Consensus 744 vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~~g~~~~~~ 816 (876)
..+..+.....--..+.+..++.++.. ...|.|+.----|-- -|++..+++++.
T Consensus 87 ~~r~~~~~~~~ig~S~h~~~e~~~a~~--~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~----------------- 147 (180)
T PF02581_consen 87 EARKLLGPDKIIGASCHSLEEAREAEE--LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA----------------- 147 (180)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHH--CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH-----------------
T ss_pred HhhhhcccceEEEeecCcHHHHHHhhh--cCCCEEEECCccCCCCCccccccCHHHHHHHHHh-----------------
Confidence 345556554445556788888766652 457999987654432 388888888763
Q ss_pred hccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 817 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 817 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
.++||+|+-+- +.+...++.++|++++-
T Consensus 148 ------~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 148 ------SPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp ------TSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred ------CCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 24899998875 67778899999999874
No 369
>PRK11677 hypothetical protein; Provisional
Probab=29.72 E-value=5.1e+02 Score=24.85 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 233 STSIGILVIASLVGHIFQATVNRIAKV 259 (876)
Q Consensus 233 ~~~~~~l~i~~l~~~~~~~~~~r~~~~ 259 (876)
..++..++|.++++++.........++
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~l 34 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQAL 34 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 333444555666666655444333333
No 370
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.50 E-value=4.9e+02 Score=24.60 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 002821 316 DYVRTAQASGKAL 328 (876)
Q Consensus 316 ~~l~~i~~~~~~L 328 (876)
+..+.+..+++.|
T Consensus 68 ~l~~Hla~~a~~L 80 (128)
T PF06295_consen 68 KLYQHLAKGAEEL 80 (128)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444444
No 371
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=29.44 E-value=5.4e+02 Score=25.07 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002821 235 SIGILVIASLVGHIFQATVN 254 (876)
Q Consensus 235 ~~~~l~i~~l~~~~~~~~~~ 254 (876)
++.++++++++.++++..+.
T Consensus 12 ~inF~il~~iL~~f~~kpi~ 31 (159)
T PRK13461 12 IINFIILLLILKHFFFDKIK 31 (159)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 33444444445455544443
No 372
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=29.32 E-value=78 Score=34.17 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=30.6
Q ss_pred CCcEE--EEcCCCCHHhHHHHHHcCCCeeE-----eCCCCHHHHHHHH
Q 002821 824 HVPIL--AMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 864 (876)
Q Consensus 824 ~~pII--alTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l 864 (876)
.+||| +.-+-..+++...++++|+|++. .|.-++.+..+.+
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akaf 244 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAI 244 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHH
Confidence 58998 77777799999999999999984 5544555544433
No 373
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=29.25 E-value=99 Score=32.87 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=48.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC------CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHh
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG------AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 798 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g------~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~ 798 (876)
.+|-+||=++...++++..+.... ---....||..-++.... ..||+|++|+--|...+ .|+.+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 589999999999999999887532 123367899998887532 27999999998886554 355555554
No 374
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.78 E-value=7.2e+02 Score=27.70 Aligned_cols=77 Identities=12% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002821 258 KVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLIN 333 (876)
Q Consensus 258 ~~~~~~~~~~~----~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lin 333 (876)
.++++++++++ -++++++..+..+.-.+.++|..+. |..+...+.-+... .+.+..+.++.++...++....+.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHH
Confidence 34444444443 3567778888888999999999885 45555555555433 455666777777777666666665
Q ss_pred HHH
Q 002821 334 EVL 336 (876)
Q Consensus 334 dlL 336 (876)
|+=
T Consensus 86 DmE 88 (330)
T PF07851_consen 86 DME 88 (330)
T ss_pred HHH
Confidence 554
No 375
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.42 E-value=3.6e+02 Score=27.25 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=35.6
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcE-EEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHh
Q 002821 788 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI-LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 866 (876)
Q Consensus 788 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pI-IalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~ 866 (876)
-|++.+++||+. ...|+ +.+...........|.++|+|+.+.-....++....++.
T Consensus 43 ~~~~~v~~i~~~-----------------------~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY-----------------------TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc-----------------------CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 578889999862 13455 324444456778888899999977765544444444433
No 376
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=27.99 E-value=2.2e+02 Score=29.98 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=41.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQ 783 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eA~~~~~~---~~~~DlilmDi~ 783 (876)
.+|.-+|=++.....++..+++.|+. +. ...+..+.+..+.. ...||+||+|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 48999999999999999999998863 33 34566776665521 357999999975
No 377
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.86 E-value=7.4e+02 Score=26.41 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=54.6
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEE-E-c-CHHHHHHHhCC-CCCccEEEEeCCCCCCC---------HHHHHHHHHh
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVC-V-E-RGKKATELLMP-PHQFDACFMDIQMPEMD---------GFEATKIIRE 798 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~-a-~-~g~eA~~~~~~-~~~~DlilmDi~MP~md---------G~e~~~~IR~ 798 (876)
|++.|--......+...++++|..... + . +..+-+..+.. ...|..++. . + +-. -.+.++++|+
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHHHHHh
Confidence 555554444556677778888976442 2 2 22333333322 223555543 2 1 222 3556666665
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCC
Q 002821 799 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 854 (876)
Q Consensus 799 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 854 (876)
. ...||++=-+-...++..++.++|+|+++.-.
T Consensus 196 ~-----------------------~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 196 Y-----------------------SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred h-----------------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 2 24576653333348999999999999998754
No 378
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=27.82 E-value=4.4e+02 Score=23.48 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 002821 273 AEAADVAKSQFLATVSHE 290 (876)
Q Consensus 273 ae~a~~aks~fla~iSHE 290 (876)
..+..+.|..|+.+|-..
T Consensus 63 ~rES~~Er~K~~~s~~~~ 80 (121)
T PF10669_consen 63 NRESKRERQKFIWSMNKQ 80 (121)
T ss_pred hhhhHHHHHhHHhhhhHH
Confidence 344555677788777543
No 379
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=27.79 E-value=7e+02 Score=29.60 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=63.1
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHhH-c-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeC--------------CCCCC
Q 002821 729 GRKILIVDDNN---VNLKVAAAGLKR-Y-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEM 787 (876)
Q Consensus 729 ~~~ILvVdDn~---~n~~vl~~~L~~-~-g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi--------------~MP~m 787 (876)
+..++++|--. .+..-.-..+++ + +..+.. +.+.++|..+.. ..+|.|..-+ -.|..
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~ 337 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCcc
Confidence 34577777543 222223344444 4 355543 678888888773 5689987632 12333
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 788 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 788 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.-+..+.++.+ ...+|||+-.+-....+..+|+.+||+..+.
T Consensus 338 ~~i~~~~~~~~-----------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 338 TAVYKVASIAA-----------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cHHHHHHHHHH-----------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 33444444443 1258999999999999999999999997753
No 380
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.36 E-value=1.8e+02 Score=31.52 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=46.4
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+++-+||.+.+. ..+|+|++|-+-| -++-+.+... ....| +..++..
T Consensus 197 IeVEv~tleea~ea~~--~gaDiI~LDn~s~----e~l~~av~~~----------------------~~~~~-leaSGGI 247 (281)
T PRK06106 197 IEVEVDTLDQLEEALE--LGVDAVLLDNMTP----DTLREAVAIV----------------------AGRAI-TEASGRI 247 (281)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCH----HHHHHHHHHh----------------------CCCce-EEEECCC
Confidence 3457889999999884 4689999996433 2222222211 01233 7889999
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...+..+.|+|-..
T Consensus 248 ~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 248 TPETAPAIAASGVDLIS 264 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998543
No 381
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=27.23 E-value=2e+02 Score=28.65 Aligned_cols=71 Identities=25% Similarity=0.231 Sum_probs=47.2
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+++-+|+.+.+. ...|.|.+|-.-| -+=-++.+.++.. .++ ..|.+++..
T Consensus 83 I~VEv~~~ee~~ea~~--~g~d~I~lD~~~~-~~~~~~v~~l~~~----------------------~~~-v~ie~SGGI 136 (169)
T PF01729_consen 83 IEVEVENLEEAEEALE--AGADIIMLDNMSP-EDLKEAVEELREL----------------------NPR-VKIEASGGI 136 (169)
T ss_dssp EEEEESSHHHHHHHHH--TT-SEEEEES-CH-HHHHHHHHHHHHH----------------------TTT-SEEEEESSS
T ss_pred EEEEcCCHHHHHHHHH--hCCCEEEecCcCH-HHHHHHHHHHhhc----------------------CCc-EEEEEECCC
Confidence 3446788889998884 4599999997544 1222233333332 123 678899999
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...+..+.|+|.+.
T Consensus 137 ~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVIS 153 (169)
T ss_dssp STTTHHHHHHTT-SEEE
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998764
No 382
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=27.16 E-value=6e+02 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 230 LAISTSIGILVIASLVGHIFQATVNR 255 (876)
Q Consensus 230 ~~~~~~~~~l~i~~l~~~~~~~~~~r 255 (876)
..+..++-++++++++.++++..+..
T Consensus 10 ~~~~~~inflil~~lL~~fl~kpi~~ 35 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRPVLN 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666555443
No 383
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=27.07 E-value=2e+02 Score=31.45 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=47.2
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+++-+||.+.+. ...|+|++|-+-| |-++++-++. ..+ .+|..++..
T Consensus 211 IeVEv~sleea~ea~~--~gaDiI~LDn~s~-----e~~~~av~~~---------------------~~~-~~ieaSGGI 261 (296)
T PRK09016 211 VEVEVENLDELDQALK--AGADIIMLDNFTT-----EQMREAVKRT---------------------NGR-ALLEVSGNV 261 (296)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCh-----HHHHHHHHhh---------------------cCC-eEEEEECCC
Confidence 4567889999999884 4589999996544 2233222211 012 367789999
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...+.-+.|+|-..
T Consensus 262 ~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 262 TLETLREFAETGVDFIS 278 (296)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998553
No 384
>PRK13566 anthranilate synthase; Provisional
Probab=26.70 E-value=1.8e+02 Score=36.04 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=40.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 727 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 727 ~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
..+++|||||-...+-..+...|++.|+.|..+...... +.+. ...||.|++
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~-~~~~DgVVL 575 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLD-RVNPDLVVL 575 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhh-hcCCCEEEE
Confidence 457899999999888899999999999999988766432 2222 246898765
No 385
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.46 E-value=1.9e+02 Score=31.56 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=47.1
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+++-+||.+.+. ...|+|++|-+-| -+=-++.+.++. -.++-.++..
T Consensus 208 IeVEvetleea~eA~~--aGaDiImLDnmsp-e~l~~av~~~~~--------------------------~~~lEaSGGI 258 (294)
T PRK06978 208 VQIEVETLAQLETALA--HGAQSVLLDNFTL-DMMREAVRVTAG--------------------------RAVLEVSGGV 258 (294)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEECCCCH-HHHHHHHHhhcC--------------------------CeEEEEECCC
Confidence 3456789999999884 4689999995433 222333333321 1468889999
Q ss_pred CHHhHHHHHHcCCCee
Q 002821 835 IQATYEECLRSGMDGY 850 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~y 850 (876)
..+...+..+.|+|-.
T Consensus 259 t~~ni~~yA~tGVD~I 274 (294)
T PRK06978 259 NFDTVRAFAETGVDRI 274 (294)
T ss_pred CHHHHHHHHhcCCCEE
Confidence 9999999999999854
No 386
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.41 E-value=2.4e+02 Score=28.54 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=35.0
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
|+|||=.--|...+...|++.|+.+..+.+..+ + ..+|.|++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l---~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I---LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h---ccCCEEEE
Confidence 588888888999999999999999999887543 3 24899887
No 387
>PLN02823 spermine synthase
Probab=26.29 E-value=1.6e+02 Score=33.01 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 786 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g-----~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~ 786 (876)
.+|-+||=|+...++++..+...+ -.+. ...||.+-++.. ...||+||+|+--|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCcc
Confidence 479999999999999999885321 2333 457888877643 457999999986553
No 388
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=26.22 E-value=4.8e+02 Score=26.23 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=51.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC--CEEEEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g--~~v~~a~~g~eA~~~~~~-~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
.+++|+.+++..+..+..++..+| |.|..+.+-+++++.++. ...+.++..+...+. ....||+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~-----~~~~ir~ 98 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD-----VEPEIRE 98 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc-----hHHHHHH
Confidence 479999999999999999999987 679999999999998852 234778888887755 4455554
No 389
>PRK05637 anthranilate synthase component II; Provisional
Probab=25.83 E-value=1.3e+02 Score=31.16 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=37.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
+||||+|-..-+-.-+...|++.|+.+..+.+.... +.+. ...||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~-~~l~-~~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPV-EEIL-AANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCH-HHHH-hcCCCEEEE
Confidence 479999998888888999999999999888775432 2222 235788776
No 390
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=25.59 E-value=3.7e+02 Score=26.27 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=22.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCE
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAA 755 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~ 755 (876)
.++|+||..--.+...-+..+|+..++.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~ 59 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVR 59 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEE
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcc
Confidence 3579999999999999999999876643
No 391
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.45 E-value=1.5e+02 Score=31.77 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCC------HHhHHHHHHcCCCeeEeC--CCCHHH-HHHHHH
Q 002821 823 FHVPILAMTADVI------QATYEECLRSGMDGYVSK--PFEAEQ-LYREVS 865 (876)
Q Consensus 823 ~~~pIIalTa~~~------~~~~~~~~~aG~d~yl~K--P~~~~~-L~~~l~ 865 (876)
..+||++||=... +....+|.++|+|+.|.- |++..+ +.....
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~ 144 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE 144 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH
Confidence 4689999986544 445778999999999987 443333 444444
No 392
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=25.21 E-value=2e+02 Score=29.83 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCcEEEEcCC----------CCHHhHHHHHHcCCCeeEe-------CC--CCHHHHHHHHHh
Q 002821 824 HVPILAMTAD----------VIQATYEECLRSGMDGYVS-------KP--FEAEQLYREVSR 866 (876)
Q Consensus 824 ~~pIIalTa~----------~~~~~~~~~~~aG~d~yl~-------KP--~~~~~L~~~l~~ 866 (876)
.+|||.++.. ...+...+|.++|+| ++. +| -+..++.+.+++
T Consensus 56 ~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 56 DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 4788766531 134578899999999 554 45 566777777766
No 393
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.19 E-value=3.8e+02 Score=28.75 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=45.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHh
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIRE 798 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g-----~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~md-----G~e~~~~IR~ 798 (876)
.++.+||-++...+.++..+...+ -.+. ...+|.+.++.. ...||+|++|.--|... .-++.+.+++
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDVIIVDSTDPVGPAETLFTKEFYELLKK 174 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccEEEEeCCCCCCcccchhHHHHHHHHHH
Confidence 479999999999999988876532 1222 346777777654 35799999998655432 2345555554
No 394
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=25.18 E-value=3.2e+02 Score=27.22 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=23.3
Q ss_pred cCCCCeEEEEeCCHHH---HHHHHHHHhHcCCEEEE
Q 002821 726 LLLGRKILIVDDNNVN---LKVAAAGLKRYGAAVVC 758 (876)
Q Consensus 726 ~~~~~~ILvVdDn~~n---~~vl~~~L~~~g~~v~~ 758 (876)
...+++||||||=-.. ...+...|++.|..|..
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~ 140 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAG 140 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEE
Confidence 3467899999997765 45556667777766543
No 395
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=25.03 E-value=1.9e+02 Score=28.77 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=41.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002821 727 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 786 (876)
Q Consensus 727 ~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~ 786 (876)
+.+++|||+---......+...|.+.|+.|..++.-.+.+.... ...|+||.-..-|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l--~~aDiVIsat~~~~ 99 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT--KQADIVIVAVGKPG 99 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH--hhCCEEEEcCCCCc
Confidence 56789999999988788888888889988877665544343222 24677777665553
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.00 E-value=4.3e+02 Score=30.02 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=51.8
Q ss_pred CeEEEEeCCHH---HHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCC-CCCCCHHHHHHHHHhhcccccc
Q 002821 730 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ-MPEMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 730 ~~ILvVdDn~~---n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~-MP~mdG~e~~~~IR~~~~~~~~ 805 (876)
.+|.++..+.. -.+.++.+-+.+|..+..+.++.+....+..-..+|+||+|-- +...|.. ..+.+..+...
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~-l~e~La~L~~~--- 243 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRT-VSDQIAMLHGA--- 243 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHH-HHHHHHHHhcc---
Confidence 46777766654 2344555555678888877766554443333345899999963 3333332 33444432110
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHH
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 842 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~ 842 (876)
..+.-.+++++|....++..+.
T Consensus 244 ---------------~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 244 ---------------DTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------------CCCCeEEEEecCccChHHHHHH
Confidence 0112247888887776665443
No 397
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=24.73 E-value=78 Score=32.81 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred EeecHHHHHHHHHHHHHHHhhccC
Q 002821 389 LIGDPGRFRQIITNLMGNSIKFTE 412 (876)
Q Consensus 389 v~~D~~rl~qIl~NLl~NAiKfT~ 412 (876)
+-|||.|-+-|-.|++.|++++++
T Consensus 19 mPGDPlRAK~iAetfLe~~~~vne 42 (236)
T COG0813 19 MPGDPLRAKYIAETFLENAVCVNE 42 (236)
T ss_pred cCCCCchHHHHHHHHHhhhhhhhh
Confidence 458999999999999999999984
No 398
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.70 E-value=6.9e+02 Score=28.56 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=60.4
Q ss_pred CCeEEEEeCCHHHHHH----HHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhccc
Q 002821 729 GRKILIVDDNNVNLKV----AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHN 802 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~v----l~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~--MP~mdG~e~~~~IR~~~~~ 802 (876)
+++|.+|+-|.. |.. ++.+.+..|..+..+.+..+....+.....+|+||+|-- +| .|-.. +.+++++-..
T Consensus 206 g~~V~lit~Dt~-R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~ 282 (388)
T PRK12723 206 SLNIKIITIDNY-RIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA 282 (388)
T ss_pred CCeEEEEeccCc-cHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh
Confidence 568888887764 333 333334467777777776655444433356999999963 22 23332 3344432110
Q ss_pred ccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHH----cCCCeeEeCCC
Q 002821 803 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPF 855 (876)
Q Consensus 803 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~----aG~d~yl~KP~ 855 (876)
...+.-.+++++|.....+..+.++ .|.++.|.==+
T Consensus 283 -----------------~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKl 322 (388)
T PRK12723 283 -----------------CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKL 322 (388)
T ss_pred -----------------cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 0011235788898888777765543 45677654333
No 399
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=24.63 E-value=2.7e+02 Score=27.21 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=40.7
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEE-------------------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHH
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCV-------------------ERGKKATELLMPPHQFDACFMDIQMPEMDGFE 791 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a-------------------~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e 791 (876)
++.+|+.+..+++++.. +..|..+..+ .+-++.++.+..-+...++=||+.||+.+|-.
T Consensus 53 ~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~S 130 (170)
T COG2061 53 VFEGDREDKDAKIIRLL-EEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGES 130 (170)
T ss_pred EEEecccHHHHHHHHHH-HhCCcEEEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCc
Confidence 46667788888877776 7777665433 35667777665444456777899999888843
No 400
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.58 E-value=5.7e+02 Score=23.68 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 002821 241 IASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMN 296 (876)
Q Consensus 241 i~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~ 296 (876)
+++++.++++..+. |..++........+.+.+++.....-..-+...-+|...=+.
T Consensus 12 l~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~ 72 (132)
T PF00430_consen 12 LFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIE 72 (132)
T ss_dssp HHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433 334455555555555555555444444445555555554443
No 401
>PLN02476 O-methyltransferase
Probab=24.58 E-value=2.5e+02 Score=30.52 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=41.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQ 783 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eA~~~~~~---~~~~DlilmDi~ 783 (876)
.+|.=+|-++.....++..+++.|+. +. ...+..+.+..+.. ...||+||+|..
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 47999999999999999999999874 43 34566666654421 257999999985
No 402
>PLN02366 spermidine synthase
Probab=24.52 E-value=3.8e+02 Score=29.52 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=40.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC-----CEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 786 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g-----~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~ 786 (876)
.+|-+||=++...++.+..+...+ -.+. ...||.+.++.. ....||+|++|..-|.
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-PEGTYDAIIVDSSDPV 177 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-cCCCCCEEEEcCCCCC
Confidence 479999999988889888886531 1333 456777777644 2457999999987664
No 403
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=24.44 E-value=1.3e+02 Score=30.54 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=35.3
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
|||||...-.-.-+..+|++.|++|..+.+..--++.+. ...||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEE
Confidence 899999988888899999999999998886542223232 235776664
No 404
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=24.39 E-value=1.2e+02 Score=32.86 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCcEE--EEcCCCCHHhHHHHHHcCCCeeE-----eCCCCHHHHHHHHH
Q 002821 824 HVPIL--AMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVS 865 (876)
Q Consensus 824 ~~pII--alTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l~ 865 (876)
.+||| +.-+-..+++...++++|+++++ .|.-++.+..+.+.
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv 251 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIV 251 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHH
Confidence 58998 77776799999999999999884 44445555444443
No 405
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.27 E-value=5.3e+02 Score=27.26 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCCHHhHHHHHHc-CCCeeEe------CCCCHHHHHHHHHh
Q 002821 824 HVPILAMTADVIQATYEECLRS-GMDGYVS------KPFEAEQLYREVSR 866 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~a-G~d~yl~------KP~~~~~L~~~l~~ 866 (876)
.+|||+--+-.+.++..++++. |+++.+. .=++.+++...+.+
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 5899999988899999999975 9998876 45777777766654
No 406
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=24.19 E-value=5.9e+02 Score=30.12 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=59.6
Q ss_pred CCeEEEEeC----CHHHHHHHHHHHhHc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCC-----------CCCCHH
Q 002821 729 GRKILIVDD----NNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDIQM-----------PEMDGF 790 (876)
Q Consensus 729 ~~~ILvVdD----n~~n~~vl~~~L~~~-g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~M-----------P~mdG~ 790 (876)
+-.++++|- .......++.+=+.+ +..+.. +.+.++|..+.. ...|.|...+.- .+...+
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~Gs~~~t~~~~~~g~p~~ 330 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSGSICITQEVCAVGRPQA 330 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCCcccccchhccCCCChH
Confidence 446888884 333334444444443 234433 556667766653 457888654311 011234
Q ss_pred HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 791 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 791 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.++..+++.-. ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 331 ~ai~~~~~~~~--------------------~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 331 SAVYHVARYAR--------------------ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred HHHHHHHHHHh--------------------hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 44444443211 1258999988888899999999999997653
No 407
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=23.82 E-value=3.9e+02 Score=29.42 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=45.6
Q ss_pred EEEEEcCHHHHHHHhC----CCCCccEEEEeCC--CCCC---CHHHHHHHHHhhcccccccccccccchhhhccCCCCCC
Q 002821 755 AVVCVERGKKATELLM----PPHQFDACFMDIQ--MPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 825 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~----~~~~~DlilmDi~--MP~m---dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 825 (876)
..+.+++-+||.+.+. .....|+|++|-+ -|+- +=-++-+.++.. ....
T Consensus 206 IeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~----------------------~~~~ 263 (308)
T PLN02716 206 IEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI----------------------NGRF 263 (308)
T ss_pred EEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh----------------------CCCc
Confidence 3456788999988874 0135899999954 1221 211222222211 1123
Q ss_pred cEEEEcCCCCHHhHHHHHHcCCCee
Q 002821 826 PILAMTADVIQATYEECLRSGMDGY 850 (876)
Q Consensus 826 pIIalTa~~~~~~~~~~~~aG~d~y 850 (876)
.+-.++....+...+..+.|+|-.
T Consensus 264 -~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 264 -ETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred -eEEEECCCCHHHHHHHHHcCCCEE
Confidence 478899999999999999999844
No 408
>PLN02335 anthranilate synthase
Probab=23.51 E-value=2.3e+02 Score=29.55 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=33.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
.++|||||-..-.-..+...|++.|+.+..+.+....++.+. ...||.|++
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-~~~~d~iVi 68 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-RKNPRGVLI 68 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hcCCCEEEE
Confidence 468999985455556688888999998888765321123222 235777665
No 409
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=23.45 E-value=97 Score=31.35 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=36.3
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEe
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 781 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmD 781 (876)
|||||...-.-.-+..+|++.|+++..+.+....++.+. ...||.|++-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-ALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCEEEEc
Confidence 899999998888899999999999888877642233332 2358877763
No 410
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=23.38 E-value=1.7e+02 Score=30.79 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=20.7
Q ss_pred eEeecHHHHHHHHHHHHHHHhhccCC
Q 002821 388 TLIGDPGRFRQIITNLMGNSIKFTEK 413 (876)
Q Consensus 388 ~v~~D~~rl~qIl~NLl~NAiKfT~~ 413 (876)
.+.|||.|..+|-. |++|+.+-.++
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~ 45 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASN 45 (248)
T ss_pred EecCCHHHHHHHHH-Hhccchhhhhc
Confidence 45699999999888 99999887643
No 411
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=23.18 E-value=2.6e+02 Score=28.68 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=60.4
Q ss_pred HHHHHHHhHcCCEEEEE--cCHHHHHHHhCCCCCccEEEEeCCCC-C----CCHHHHHHHHHhhcccccccccccccchh
Q 002821 743 KVAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMP-E----MDGFEATKIIREMEHNFNNRIRRGEVSIE 815 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~a--~~g~eA~~~~~~~~~~DlilmDi~MP-~----mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 815 (876)
.-....|++.|+.+..- ..+...++.+. ...||.|=+|..+. . ......++.|...-+
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~-~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~-------------- 199 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLK-RLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH-------------- 199 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHH-hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH--------------
Confidence 34556677889987764 45566666664 45699999996542 1 123445555544321
Q ss_pred hhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCC----eeEeCCCCHH
Q 002821 816 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAE 858 (876)
Q Consensus 816 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~ 858 (876)
...+++| .++-.+.+....+.+.|++ .|+.||.+.+
T Consensus 200 ------~~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 200 ------SLGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred ------HCCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 1234444 6777889999999999996 4677887643
No 412
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.04 E-value=1.2e+02 Score=32.92 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCee------EeCCCCHHHHHHHHHhhCCCC
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGY------VSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~y------l~KP~~~~~L~~~l~~~~~~~ 871 (876)
++|||+..+-.+.++..+++++|+|.. +.-|.-..++.+-+.+|+..+
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 589999998889999999999999854 456777788888888877644
No 413
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=22.96 E-value=2.7e+02 Score=30.42 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=47.7
Q ss_pred eEEEEeCCHHHHHHHHHHHhHc--CC---EEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH
Q 002821 731 KILIVDDNNVNLKVAAAGLKRY--GA---AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT 793 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~--g~---~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~ 793 (876)
.|+++|-+....++-+.+|... || +|. ...||.+-++.+. .++||+|+.|+.=|++++-.+-
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-ENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-cCCceEEEEecCCccchHHHHH
Confidence 5899998888888888887753 44 233 3459999888874 5789999999999999886543
No 414
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=22.80 E-value=2.9e+02 Score=29.82 Aligned_cols=70 Identities=21% Similarity=0.098 Sum_probs=46.5
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCC
Q 002821 756 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 835 (876)
Q Consensus 756 v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 835 (876)
-+.+.+-+||.+.+. ...|.|.+|-.-|. +=-++.+.+|. ..+++|+++ ++...
T Consensus 187 gVev~t~eea~~A~~--~gaD~I~ld~~~p~-~l~~~~~~~~~----------------------~~~~i~i~A-sGGI~ 240 (272)
T cd01573 187 VVEVDSLEEALAAAE--AGADILQLDKFSPE-ELAELVPKLRS----------------------LAPPVLLAA-AGGIN 240 (272)
T ss_pred EEEcCCHHHHHHHHH--cCCCEEEECCCCHH-HHHHHHHHHhc----------------------cCCCceEEE-ECCCC
Confidence 445788888888763 46899999965553 11122333332 123577665 55678
Q ss_pred HHhHHHHHHcCCCeeE
Q 002821 836 QATYEECLRSGMDGYV 851 (876)
Q Consensus 836 ~~~~~~~~~aG~d~yl 851 (876)
.+...+..++|+|.+.
T Consensus 241 ~~ni~~~~~~Gvd~I~ 256 (272)
T cd01573 241 IENAAAYAAAGADILV 256 (272)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 8999999999999874
No 415
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=22.68 E-value=83 Score=35.26 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCe------eEeC-CCCHHHHHHHHHhhCCC
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDG------YVSK-PFEAEQLYREVSRFFPP 870 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~------yl~K-P~~~~~L~~~l~~~~~~ 870 (876)
.+|||++.+-.+.++..+++.+|+|. ++.+ |.-..++.+.+.+|+..
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 58999999999999999999999994 4666 88888899999888764
No 416
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=22.65 E-value=2.3e+02 Score=25.43 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=39.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC---EEEEEcCHHHHHHHhCCCCCccEEEEeCCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQM 784 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~---~v~~a~~g~eA~~~~~~~~~~DlilmDi~M 784 (876)
.++.-+|=|+.....++..+...+. .-....|..+..+.+ ....||+|++|.-.
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-PDGKFDLIVTNPPY 80 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-TTT-EEEEEE--ST
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-cCceeEEEEECCCC
Confidence 5899999999999999999998875 234455666665444 45789999999744
No 417
>PRK04457 spermidine synthase; Provisional
Probab=22.40 E-value=2.5e+02 Score=30.02 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=45.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcC--CEEE-EEcCHHHHHHHhCCCCCccEEEEeCC----CCC-CCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYG--AAVV-CVERGKKATELLMPPHQFDACFMDIQ----MPE-MDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g--~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~----MP~-mdG~e~~~~IR~ 798 (876)
+.+|.+||=++....+++..+...+ ..+. ...|+.+.+... +..||+|++|.- ||. +.--++.+.+++
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--RHSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--CCCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 3579999999999999998876432 2333 457888777643 357999999962 221 122466666655
No 418
>PRK12704 phosphodiesterase; Provisional
Probab=22.33 E-value=78 Score=37.64 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=36.9
Q ss_pred cEEEEcCCCCHH--hHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 826 PILAMTADVIQA--TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 826 pIIalTa~~~~~--~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+|++|+..... ....+++.|+.|+..||+..++++..+.+-+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 478899977765 8889999999999999999999998887643
No 419
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=22.21 E-value=53 Score=34.77 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=19.9
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
.+||||+||++|++- .+.--.|++.+..
T Consensus 12 nSglGl~i~~RLl~~----------~De~~~ltl~ltc 39 (341)
T KOG1478|consen 12 NSGLGLAICKRLLAE----------DDENVRLTLCLTC 39 (341)
T ss_pred CCcccHHHHHHHHhc----------cCCceeEEEEEEe
Confidence 579999999999976 3334456666543
No 420
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.16 E-value=3.7e+02 Score=27.37 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=35.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
+|+|+|=.--|...+...|++.|+.+....+..+ + ..||.|++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~----l---~~~d~iii 43 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEE----I---LAADGVIL 43 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHH----h---ccCCEEEE
Confidence 3889999999999999999999999999876532 2 24899886
No 421
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=22.13 E-value=1.9e+02 Score=24.68 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHH
Q 002821 762 GKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 841 (876)
Q Consensus 762 g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~ 841 (876)
.++.++.+.....+.+-..||. +.-+ +... + ...+|++++........
T Consensus 16 a~~~L~~~~~~~~~~l~~vDI~----~d~~----l~~~---Y------------------~~~IPVl~~~~~~~~~~--- 63 (81)
T PF05768_consen 16 AKEILEEVAAEFPFELEEVDID----EDPE----LFEK---Y------------------GYRIPVLHIDGIRQFKE--- 63 (81)
T ss_dssp HHHHHHHCCTTSTCEEEEEETT----TTHH----HHHH---S------------------CTSTSEEEETT-GGGCT---
T ss_pred HHHHHHHHHhhcCceEEEEECC----CCHH----HHHH---h------------------cCCCCEEEEcCcccccc---
Confidence 3444554444567999999997 3322 2211 0 24799999887432222
Q ss_pred HHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 842 CLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 842 ~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
.-.+.-||+.++|.+.|+
T Consensus 64 ------~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 64 ------QEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp ------SEEEESSB-HHHHHHHHH
T ss_pred ------cceeCCCCCHHHHHHHhC
Confidence 457788999999988764
No 422
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.87 E-value=8.2e+02 Score=24.55 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002821 257 AKVEEDYHGMMELKKKAEAADVAKSQFLATV 287 (876)
Q Consensus 257 ~~~~~~~~~~~~~~~~ae~a~~aks~fla~i 287 (876)
..+........+.+.+++.....-..-+...
T Consensus 65 ~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~A 95 (181)
T PRK13454 65 GTITNDLAAAEELKQKAVEAEKAYNKALADA 95 (181)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.83 E-value=6.4e+02 Score=31.57 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=60.6
Q ss_pred CeEEEEeCCHH---HHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhccccc
Q 002821 730 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHNFN 804 (876)
Q Consensus 730 ~~ILvVdDn~~---n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG--~e~~~~IR~~~~~~~ 804 (876)
++|.+|+-+.. -...++.+-+..|..+..+.+..+..+.+..-..+|+||+|- |+++- -+..+++..+..
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDT--AGRs~~d~~l~eel~~l~~--- 290 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDT--VGMSQRDRNVSEQIAMLCG--- 290 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeC--CCCCccCHHHHHHHHHHhc---
Confidence 47877776643 124455555567877777777777655554445689999995 45322 124455554321
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHH---HHHc----CCCeeEeCCC
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---CLRS----GMDGYVSKPF 855 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~---~~~a----G~d~yl~KP~ 855 (876)
...++-.++++++....++..+ .++. +.+++|.-=+
T Consensus 291 ---------------~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 291 ---------------VGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred ---------------cCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEecc
Confidence 1123445788888776655543 3332 5677654333
No 424
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.75 E-value=6.9e+02 Score=28.95 Aligned_cols=67 Identities=15% Similarity=0.039 Sum_probs=37.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhH----cCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHH
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKR----YGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDG--FEATKI 795 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~----~g~~v~~a~~g-------~eA~~~~~~~~~~DlilmDi~MP~mdG--~e~~~~ 795 (876)
|++|+||+-++ .|-.+...|+. .|..+....++ .++++.+. ...||+||+|.- +... -+..++
T Consensus 128 G~kV~lV~~D~-~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~-~~~~DvViIDTa--Gr~~~d~~lm~E 203 (429)
T TIGR01425 128 GFKPCLVCADT-FRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK-KENFDIIIVDTS--GRHKQEDSLFEE 203 (429)
T ss_pred CCCEEEEcCcc-cchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH-hCCCCEEEEECC--CCCcchHHHHHH
Confidence 56899988775 33344444443 44554544332 24555553 357999999973 3332 234555
Q ss_pred HHhh
Q 002821 796 IREM 799 (876)
Q Consensus 796 IR~~ 799 (876)
+++.
T Consensus 204 l~~i 207 (429)
T TIGR01425 204 MLQV 207 (429)
T ss_pred HHHH
Confidence 5543
No 425
>PRK07695 transcriptional regulator TenI; Provisional
Probab=21.63 E-value=4.7e+02 Score=26.50 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=42.4
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCC-----C--CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEc
Q 002821 759 VERGKKATELLMPPHQFDACFMDIQMP-----E--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 831 (876)
Q Consensus 759 a~~g~eA~~~~~~~~~~DlilmDi~MP-----~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 831 (876)
+.+..++.+.. ....|.|+..-..| + ..|++.++++++. .++||+++-
T Consensus 102 ~~s~e~a~~a~--~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-----------------------~~ipvia~G 156 (201)
T PRK07695 102 VHSLEEAIQAE--KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-----------------------LSIPVIAIG 156 (201)
T ss_pred CCCHHHHHHHH--HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-----------------------CCCCEEEEc
Confidence 34555554443 23567776543221 1 2367777777652 258999776
Q ss_pred CCCCHHhHHHHHHcCCCee
Q 002821 832 ADVIQATYEECLRSGMDGY 850 (876)
Q Consensus 832 a~~~~~~~~~~~~aG~d~y 850 (876)
+- ..+...+++++|++++
T Consensus 157 GI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 157 GI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CC-CHHHHHHHHHcCCCEE
Confidence 65 8889999999999987
No 426
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.57 E-value=2.4e+02 Score=29.78 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCCcEEEEc-----CCCCHHhHHHHHHcCCCeeEeC--CCC
Q 002821 823 FHVPILAMT-----ADVIQATYEECLRSGMDGYVSK--PFE 856 (876)
Q Consensus 823 ~~~pIIalT-----a~~~~~~~~~~~~aG~d~yl~K--P~~ 856 (876)
.++|++.|+ .........+|.++|+|+++.- |++
T Consensus 73 ~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e 113 (244)
T PRK13125 73 VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLID 113 (244)
T ss_pred CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCC
Confidence 367887664 2233445778999999999986 554
No 427
>PRK10037 cell division protein; Provisional
Probab=21.55 E-value=3.8e+02 Score=28.22 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=10.4
Q ss_pred CCCeEEEEeCCHH
Q 002821 728 LGRKILIVDDNNV 740 (876)
Q Consensus 728 ~~~~ILvVdDn~~ 740 (876)
.|+||||||-++-
T Consensus 29 ~G~rVLlID~D~q 41 (250)
T PRK10037 29 LGENVLVIDACPD 41 (250)
T ss_pred cCCcEEEEeCChh
Confidence 3679999998874
No 428
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=21.50 E-value=8e+02 Score=24.31 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHH
Q 002821 238 ILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGV 298 (876)
Q Consensus 238 ~l~i~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I 298 (876)
++++++++.++++..+. |...+........+.+.++++....-.+-++..--|.+.=++..
T Consensus 26 Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 91 (173)
T PRK13460 26 FLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEA 91 (173)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333 33344444444444444444333333333444444444444433
No 429
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.35 E-value=2.4e+02 Score=32.68 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.8
Q ss_pred EEEEEeeCCCCChhhH
Q 002821 481 IVSVEDTGQGIPLEAQ 496 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~ 496 (876)
.+.|.|+|+||..+++
T Consensus 143 lLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 143 LLHITDTGIGMTREDL 158 (785)
T ss_pred eeeEecccCCccHHHH
Confidence 4789999999998865
No 430
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=21.24 E-value=4.1e+02 Score=27.65 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=42.8
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 775 FDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 775 ~DlilmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
.-+|++|+.--++ .| +++++++++. ..+|+|+--+-...++..++.++|+++.+
T Consensus 155 ~~ii~tdI~~dGt~~G~d~eli~~i~~~-----------------------~~~pvia~GGi~s~ed~~~l~~~Ga~~vi 211 (221)
T TIGR00734 155 YGLIVLDIHSVGTMKGPNLELLTKTLEL-----------------------SEHPVMLGGGISGVEDLELLKEMGVSAVL 211 (221)
T ss_pred CEEEEEECCccccCCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3688999876433 33 6788888762 35899998888889999999999999987
Q ss_pred e
Q 002821 852 S 852 (876)
Q Consensus 852 ~ 852 (876)
.
T Consensus 212 v 212 (221)
T TIGR00734 212 V 212 (221)
T ss_pred E
Confidence 5
No 431
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.13 E-value=4e+02 Score=27.27 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=59.2
Q ss_pred HHHHHHhHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCC---CC--HHHHHHHHHhhcccccccccccccchhh
Q 002821 744 VAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMPE---MD--GFEATKIIREMEHNFNNRIRRGEVSIEA 816 (876)
Q Consensus 744 vl~~~L~~~g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~MP~---md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~ 816 (876)
-....|++.|+.+.. +..|..-+..+. ..++|.|=+|..+-. .+ ...+++.|...-+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~--------------- 200 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ--------------- 200 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH---------------
Confidence 455677889988765 345566666664 457999999965421 11 3344555544321
Q ss_pred hccCCCCCCcEEEEcCCCCHHhHHHHHHcCCC----eeEeCCCCHH
Q 002821 817 YENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAE 858 (876)
Q Consensus 817 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~ 858 (876)
...+.+| .++-.+.++...+.+.|++ .|+.||...+
T Consensus 201 -----~~~~~vi-a~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 201 -----KLGLQVV-AEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred -----HCCCeEE-EecCCCHHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 1234444 5777788999999999997 4578887643
No 432
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.97 E-value=67 Score=22.21 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=10.0
Q ss_pred eEEEEEEeeCCC
Q 002821 479 NLIVSVEDTGQG 490 (876)
Q Consensus 479 ~l~i~V~DtG~G 490 (876)
+..|+|+|+|+-
T Consensus 13 n~qITIeD~GPK 24 (30)
T PF07492_consen 13 NFQITIEDTGPK 24 (30)
T ss_pred CcEEEEecCCCe
Confidence 468999999973
No 433
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.82 E-value=9.3e+02 Score=27.68 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=60.2
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHhH-c-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCC------------CH
Q 002821 729 GRKILIVDDNN---VNLKVAAAGLKR-Y-GAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEM------------DG 789 (876)
Q Consensus 729 ~~~ILvVdDn~---~n~~vl~~~L~~-~-g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~MP~m------------dG 789 (876)
|-.++++|--. ....-+-..+++ + +..+.. +.+.++|..+.. ..+|.|..-+- |+- .-
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~--aGaD~I~vG~g-~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGIG-PGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH--cCCCEEEECCC-CCcCCcceeecCCCCCh
Confidence 44677777522 222222233333 3 233333 678888888764 35898875321 211 13
Q ss_pred HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 790 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 790 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
++++..+++.- ....+|||+=-+-....+..+|+.+||+.++.
T Consensus 242 ltai~~v~~~~--------------------~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 242 ITAICDVYEVC--------------------KNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred HHHHHHHHHHH--------------------hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44444444321 02358999999999999999999999997753
No 434
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.78 E-value=8.7e+02 Score=24.46 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=57.0
Q ss_pred HHHHHHHhHcCCEEEEE-cCH----HHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHhhccccccccccc
Q 002821 743 KVAAAGLKRYGAAVVCV-ERG----KKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~a-~~g----~eA~~~~~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~~g 810 (876)
..+....+++|..+... .+. .++..+. +...|+|-+. |+. .+.+..+++++.-
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~--~~g~d~v~~~---pg~~~~~~~~~~~~~i~~l~~~~---------- 156 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELK--ELGADYIGVH---TGLDEQAKGQNPFEDLQTILKLV---------- 156 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHH--HcCCCEEEEc---CCcCcccCCCCCHHHHHHHHHhc----------
Confidence 44555677789887655 233 3444443 2357888664 332 2344455555421
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHH
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVS 865 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~ 865 (876)
. .+.|++++....+...+++++|+|.++. +.-++.+..+.++
T Consensus 157 ------------~-~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~ 203 (206)
T TIGR03128 157 ------------K-EARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203 (206)
T ss_pred ------------C-CCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHH
Confidence 1 2456667888889999999999997765 4334555544444
No 435
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=20.77 E-value=5.1e+02 Score=26.64 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=57.0
Q ss_pred hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEecccCccccCCCCCCCC
Q 002821 604 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 683 (876)
Q Consensus 604 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 683 (876)
.|+.+..+.+..+++..+... .++.+++|......+..........+++..+ ..++++++...............+
T Consensus 16 ~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~G 91 (207)
T PRK11475 16 NPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSP 91 (207)
T ss_pred CeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcC
Confidence 466677888998888876543 3577775432222222223445666655322 245555543221111111110125
Q ss_pred CCceeccCCchHHHHHHHHHHhcC
Q 002821 684 IPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 684 ~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
...++.||.....+..+++.++..
T Consensus 92 a~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 92 LDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred CeEEEecCCCHHHHHHHHHHHHCC
Confidence 667999999999999999988753
No 436
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.65 E-value=2.8e+02 Score=25.38 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHhHcCCEEEEEcCH-----HHHHHHhCCC-CCccEEEE--eCCC---CCCCHHHHHHHH
Q 002821 745 AAAGLKRYGAAVVCVERG-----KKATELLMPP-HQFDACFM--DIQM---PEMDGFEATKII 796 (876)
Q Consensus 745 l~~~L~~~g~~v~~a~~g-----~eA~~~~~~~-~~~Dlilm--Di~M---P~mdG~e~~~~I 796 (876)
...+|++.|..+..+..+ .+..+++. . +.+|+|+- |-.. ..-||+.+.|.-
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~-~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A 95 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIA-EKGKFDVVINLRDPRRDRCTDEDGTALLRLA 95 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHh-CCCCEEEEEEcCCCCcccccCCChHHHHHHH
Confidence 345677788887776442 45677774 5 78999876 4333 466788654433
No 437
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.64 E-value=8e+02 Score=26.40 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=43.0
Q ss_pred eE-EEEeCCHHH---HHHHHHHHhHcCCEEEEE-------cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 731 KI-LIVDDNNVN---LKVAAAGLKRYGAAVVCV-------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 731 ~I-LvVdDn~~n---~~vl~~~L~~~g~~v~~a-------~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
++ +|.+|++.- ...++..+++.|.+|+.. .|-...+..++ ...+|+|++-.. ..++..+++++++
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~-~~~pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAA-AGGPDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHH-hcCCCEEEEecc--cchHHHHHHHHHH
Confidence 44 445666643 345677788889887642 34555666664 467999998654 3378888888876
No 438
>PRK10060 RNase II stability modulator; Provisional
Probab=20.50 E-value=6.4e+02 Score=30.97 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=72.4
Q ss_pred HHHHHHHhHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCC----C-CCCHHHHHHHHHhhcccccccccccccchh
Q 002821 743 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQM----P-EMDGFEATKIIREMEHNFNNRIRRGEVSIE 815 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~M----P-~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 815 (876)
.-....|++.|+.+.. +..|-.-+..+. .-++|.|=+|-.. . ......+++.|-.+-+.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~-~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~------------- 609 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLA-RFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQA------------- 609 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHH-hCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHH-------------
Confidence 4445778889998776 557777788875 4679999998422 2 22344555555443221
Q ss_pred hhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCC----eeEeCCCCHHHHHHHHHhhCCC
Q 002821 816 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 816 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d----~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
-.+.+| ..+-.+.+....+.+.|+| .|+.||...+++..-+.++...
T Consensus 610 -------lg~~vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~~~ 660 (663)
T PRK10060 610 -------LNLQVI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYLKR 660 (663)
T ss_pred -------CCCcEE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhhhc
Confidence 134555 4566677888888899997 4588999999999888877543
No 439
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.47 E-value=3.8e+02 Score=28.62 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=38.7
Q ss_pred cEEEEeCCCCC-CC--HHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHH-HcCCCeeE
Q 002821 776 DACFMDIQMPE-MD--GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYV 851 (876)
Q Consensus 776 DlilmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~-~aG~d~yl 851 (876)
.++++|+.--+ +. -+++++++++. ..+|||+--+-.+.++..+++ +.|+++.+
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~-----------------------~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA-----------------------LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh-----------------------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 36677664221 12 26677777752 358999999889999999999 79999765
Q ss_pred e
Q 002821 852 S 852 (876)
Q Consensus 852 ~ 852 (876)
.
T Consensus 225 v 225 (258)
T PRK01033 225 A 225 (258)
T ss_pred E
Confidence 3
No 440
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=20.45 E-value=60 Score=33.44 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=15.6
Q ss_pred CCcccccHHHHHHHHHH
Q 002821 514 HGGTGIGLSISKYLVGR 530 (876)
Q Consensus 514 ~~GtGLGLsI~k~lv~~ 530 (876)
.|++|+||.++|++.++
T Consensus 12 GG~sGIGl~lak~f~el 28 (245)
T COG3967 12 GGASGIGLALAKRFLEL 28 (245)
T ss_pred CCcchhhHHHHHHHHHh
Confidence 57899999999999987
No 441
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=20.38 E-value=5.1e+02 Score=29.50 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=42.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCE-E-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHH-HHh
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAA-V-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKI-IRE 798 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~-v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~-IR~ 798 (876)
.+|..+|=|+...+.++.-++..|.. + ....|..+.+.. ...||+|++|- |+. +.+++.. |+.
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP--~Gs-~~~~l~~al~~ 147 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDP--FGS-PAPFLDSAIRS 147 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECC--CCC-cHHHHHHHHHH
Confidence 37999999999999999988877754 2 233344333321 34699999996 544 4456555 554
No 442
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.37 E-value=9.6e+02 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
++||++-.+-...++...+.+.|+|+++.
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 57999888777899999999999999865
No 443
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=20.35 E-value=2.2e+02 Score=30.95 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=43.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC--CE----EEEEcCHHHHHHHhCCCCCccEEEEeCCCCC
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG--AA----VVCVERGKKATELLMPPHQFDACFMDIQMPE 786 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g--~~----v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~ 786 (876)
.+|-+||=|+...++.++.|.... .. -....||.+-++... +.||+|++|..=|.
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~--~~fDvIi~D~tdp~ 161 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE--EKFDVIIVDSTDPV 161 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC--CcCCEEEEcCCCCC
Confidence 489999999999999999997643 22 335688988887653 47999999998883
No 444
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.34 E-value=6.5e+02 Score=26.21 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred CHHHHHHHhCCCCCcc-EEEEeCCC---CCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCH
Q 002821 761 RGKKATELLMPPHQFD-ACFMDIQM---PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQ 836 (876)
Q Consensus 761 ~g~eA~~~~~~~~~~D-lilmDi~M---P~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~ 836 (876)
+..+..+.+. ...++ +++.|+.. ...-.++.++++++. .++||++--+-.+.
T Consensus 150 ~~~~~~~~~~-~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~iPvia~GGI~~~ 205 (241)
T PRK13585 150 TPVEAAKRFE-ELGAGSILFTNVDVEGLLEGVNTEPVKELVDS-----------------------VDIPVIASGGVTTL 205 (241)
T ss_pred CHHHHHHHHH-HcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCH
Confidence 3344444443 23455 45556532 122346778888752 25899998888878
Q ss_pred HhHHHHHHcCCCeeE------eCCCCHHHHHHH
Q 002821 837 ATYEECLRSGMDGYV------SKPFEAEQLYRE 863 (876)
Q Consensus 837 ~~~~~~~~aG~d~yl------~KP~~~~~L~~~ 863 (876)
++..++.++|+++.+ ..|+..+++...
T Consensus 206 ~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 206 DDLRALKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred HHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 999999999999864 567776666544
No 445
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.25 E-value=5.6e+02 Score=30.65 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=34.0
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCC
Q 002821 729 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 788 (876)
Q Consensus 729 ~~~ILvVdDn~~n---~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~md 788 (876)
+++|.+++-+..- ...+..+-+..|+.+..+.+..+..+.+..-..+|+||+|. |++.
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDT--aG~s 440 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDT--AGMG 440 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecC--CCcc
Confidence 3578888755411 22233333445677777776665555553334699999997 4443
No 446
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=20.07 E-value=9.7e+02 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.+|||+--+-....+..+++.+|++..+.
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 58999877777889999999999998765
No 447
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=20.00 E-value=1.8e+02 Score=28.74 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC
Q 002821 727 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 787 (876)
Q Consensus 727 ~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~m 787 (876)
+.|++++||-.....-+-+..+|.+.|+.|+.+..-.+-++... ..-|+|+.-.--|.+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~--~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT--RRADIVVSAVGKPNL 92 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH--TTSSEEEE-SSSTT-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee--eeccEEeeeeccccc
Confidence 56899999999999999999999999999998865433333222 246999888876665
Done!