Query 002821
Match_columns 876
No_of_seqs 743 out of 4535
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 02:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 7.4E-40 2.5E-44 349.0 32.2 232 271-555 11-249 (258)
2 3t4l_A Histidine kinase 4; PAS 100.0 2.4E-39 8.3E-44 345.2 19.6 216 2-225 53-270 (270)
3 4ew8_A Sensor protein DIVL; si 100.0 1.1E-34 3.8E-39 310.3 32.5 231 266-556 26-258 (268)
4 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.3E-34 4.4E-39 327.6 23.9 227 275-556 116-375 (388)
5 2btz_A Pyruvate dehydrogenase 100.0 1.6E-34 5.4E-39 327.5 23.9 219 282-555 97-351 (394)
6 2e0a_A Pyruvate dehydrogenase 100.0 3.9E-34 1.3E-38 324.2 25.1 219 281-555 96-351 (394)
7 3jz3_A Sensor protein QSEC; he 100.0 1.6E-35 5.6E-40 306.9 12.6 215 280-555 2-218 (222)
8 2q8g_A [pyruvate dehydrogenase 100.0 1.3E-33 4.6E-38 321.2 25.9 218 283-555 108-364 (407)
9 1y8o_A [pyruvate dehydrogenase 100.0 7.3E-33 2.5E-37 316.2 22.8 220 280-555 118-375 (419)
10 3a0r_A Sensor protein; four he 100.0 3.7E-32 1.3E-36 301.6 25.9 214 278-555 130-346 (349)
11 3d36_A Sporulation kinase B; G 100.0 2.6E-32 8.9E-37 287.1 22.7 214 278-556 12-227 (244)
12 4fpp_A Phosphotransferase; fou 100.0 2.1E-31 7.1E-36 282.4 24.1 195 283-552 49-246 (247)
13 1b3q_A Protein (chemotaxis pro 100.0 8E-28 2.7E-32 270.6 19.9 202 278-555 8-249 (379)
14 3to5_A CHEY homolog; alpha(5)b 99.9 4.7E-26 1.6E-30 217.1 15.6 121 729-870 12-133 (134)
15 3ehh_A Sensor kinase (YOCF pro 99.9 2.3E-24 7.9E-29 222.9 20.7 190 277-554 25-216 (218)
16 1id0_A PHOQ histidine kinase; 99.9 2.6E-24 8.9E-29 209.3 19.4 145 351-555 2-146 (152)
17 1ysr_A Sensor-type histidine k 99.9 2.3E-24 8E-29 209.4 18.1 146 349-554 4-149 (150)
18 3a0y_A Sensor protein; ATP-LID 99.9 2.3E-23 8E-28 202.3 20.6 146 349-555 2-149 (152)
19 3sl2_A Sensor histidine kinase 99.9 8.7E-24 3E-28 211.6 17.6 153 352-557 2-155 (177)
20 3mm4_A Histidine kinase homolo 99.9 4.7E-24 1.6E-28 219.3 15.4 123 729-871 61-197 (206)
21 1bxd_A ENVZ(290-450), protein 99.9 1.3E-23 4.4E-28 206.8 17.5 149 347-556 4-152 (161)
22 1r62_A Nitrogen regulation pro 99.9 2.6E-23 8.8E-28 203.7 16.8 156 347-554 2-159 (160)
23 2ayx_A Sensor kinase protein R 99.9 5.4E-22 1.9E-26 210.8 26.8 239 577-869 7-246 (254)
24 3luf_A Two-component system re 99.9 1.4E-22 4.8E-27 216.0 21.3 237 582-869 5-244 (259)
25 1i58_A Chemotaxis protein CHEA 99.9 7.4E-23 2.5E-27 207.1 13.8 149 351-553 3-188 (189)
26 2lpm_A Two-component response 99.9 1.6E-23 5.4E-28 196.2 3.5 114 729-870 8-122 (123)
27 3gl9_A Response regulator; bet 99.9 1.4E-20 4.8E-25 175.9 17.5 119 730-869 3-121 (122)
28 3f6p_A Transcriptional regulat 99.8 7E-20 2.4E-24 170.5 15.7 117 730-870 3-119 (120)
29 3t6k_A Response regulator rece 99.8 5.8E-20 2E-24 175.2 15.1 121 729-870 4-124 (136)
30 2r25_B Osmosensing histidine p 99.8 1.2E-19 4E-24 172.4 16.8 121 730-871 3-128 (133)
31 3n0r_A Response regulator; sig 99.8 4.8E-21 1.6E-25 207.0 7.6 117 729-871 160-278 (286)
32 3h1g_A Chemotaxis protein CHEY 99.8 1.1E-19 3.9E-24 171.3 15.6 122 729-870 5-127 (129)
33 3ehg_A Sensor kinase (YOCF pro 99.8 8.8E-20 3E-24 172.5 13.9 125 353-554 2-126 (128)
34 3m6m_D Sensory/regulatory prot 99.8 2E-19 6.8E-24 173.1 15.7 124 729-871 14-137 (143)
35 3zxo_A Redox sensor histidine 99.8 3.2E-19 1.1E-23 168.4 15.1 125 351-554 3-128 (129)
36 3rqi_A Response regulator prot 99.8 2.2E-19 7.6E-24 180.7 13.0 117 729-868 7-123 (184)
37 1dbw_A Transcriptional regulat 99.8 3.7E-18 1.3E-22 159.9 17.8 119 729-870 3-121 (126)
38 3gt7_A Sensor protein; structu 99.8 3.4E-18 1.2E-22 166.5 16.8 120 729-869 7-126 (154)
39 1srr_A SPO0F, sporulation resp 99.8 2.9E-18 9.9E-23 160.0 15.5 118 730-870 4-121 (124)
40 1mb3_A Cell division response 99.8 2.1E-18 7.2E-23 160.6 14.4 121 730-871 2-122 (124)
41 3eod_A Protein HNR; response r 99.8 3.3E-18 1.1E-22 161.0 15.5 121 728-871 6-127 (130)
42 3lua_A Response regulator rece 99.8 2.1E-18 7.1E-23 164.7 13.9 123 729-871 4-128 (140)
43 3zxq_A Hypoxia sensor histidin 99.8 5.1E-18 1.8E-22 159.0 16.2 122 354-554 2-123 (124)
44 3hdv_A Response regulator; PSI 99.8 4.8E-18 1.6E-22 161.2 15.3 122 729-871 7-128 (136)
45 3i42_A Response regulator rece 99.8 1.9E-18 6.7E-23 161.9 12.4 121 730-872 4-124 (127)
46 1tmy_A CHEY protein, TMY; chem 99.8 5.1E-18 1.7E-22 157.2 15.1 116 730-868 3-119 (120)
47 3crn_A Response regulator rece 99.8 4.4E-18 1.5E-22 160.9 14.8 116 730-868 4-119 (132)
48 2pl1_A Transcriptional regulat 99.8 7.7E-18 2.6E-22 156.1 15.7 116 731-869 2-117 (121)
49 3kto_A Response regulator rece 99.8 1.8E-18 6E-23 164.6 11.6 117 730-869 7-125 (136)
50 3heb_A Response regulator rece 99.8 8.3E-18 2.9E-22 163.0 16.1 119 729-867 4-132 (152)
51 1jbe_A Chemotaxis protein CHEY 99.8 1.3E-17 4.5E-22 156.3 16.6 118 730-868 5-123 (128)
52 3snk_A Response regulator CHEY 99.8 1.4E-18 4.9E-23 164.9 9.7 119 729-870 14-133 (135)
53 1zgz_A Torcad operon transcrip 99.8 1.1E-17 3.8E-22 155.4 15.4 115 730-868 3-117 (122)
54 1i3c_A Response regulator RCP1 99.8 1.8E-17 6.1E-22 160.4 17.4 118 730-867 9-134 (149)
55 3ilh_A Two component response 99.8 1E-17 3.5E-22 160.5 15.2 126 729-872 9-141 (146)
56 1dcf_A ETR1 protein; beta-alph 99.8 2E-17 6.8E-22 157.0 17.0 124 728-870 6-129 (136)
57 2a9o_A Response regulator; ess 99.7 9.2E-18 3.1E-22 155.1 14.1 116 730-869 2-117 (120)
58 3hv2_A Response regulator/HD d 99.7 1.1E-17 3.7E-22 162.5 15.1 117 729-868 14-131 (153)
59 4dad_A Putative pilus assembly 99.7 2.9E-18 9.8E-23 165.0 10.8 121 729-871 20-142 (146)
60 1xhf_A DYE resistance, aerobic 99.7 1.4E-17 4.6E-22 155.0 14.7 115 730-868 4-118 (123)
61 3r0j_A Possible two component 99.7 9.4E-18 3.2E-22 177.4 15.3 117 729-868 23-139 (250)
62 3h5i_A Response regulator/sens 99.7 4.6E-18 1.6E-22 162.6 11.7 117 729-868 5-122 (140)
63 1mvo_A PHOP response regulator 99.7 1.1E-17 3.6E-22 158.7 14.1 118 730-870 4-121 (136)
64 3dzd_A Transcriptional regulat 99.7 2.7E-18 9.2E-23 191.9 11.5 116 730-868 1-116 (368)
65 3f6c_A Positive transcription 99.7 5.8E-18 2E-22 160.0 11.9 120 730-872 2-122 (134)
66 3b2n_A Uncharacterized protein 99.7 1.3E-17 4.3E-22 158.0 14.2 118 730-870 4-123 (133)
67 4e7p_A Response regulator; DNA 99.7 2E-17 6.7E-22 160.1 15.6 120 730-872 21-142 (150)
68 3hzh_A Chemotaxis response reg 99.7 1.7E-17 6E-22 162.0 15.3 118 729-869 36-156 (157)
69 1p6q_A CHEY2; chemotaxis, sign 99.7 9.7E-18 3.3E-22 157.4 13.0 119 730-869 7-126 (129)
70 3grc_A Sensor protein, kinase; 99.7 6.6E-18 2.2E-22 161.1 11.7 120 729-869 6-126 (140)
71 3cfy_A Putative LUXO repressor 99.7 1.1E-17 3.7E-22 159.6 13.2 116 730-868 5-120 (137)
72 2qzj_A Two-component response 99.7 1.4E-17 4.9E-22 158.5 14.0 115 730-868 5-119 (136)
73 1k68_A Phytochrome response re 99.7 3.7E-17 1.3E-21 155.0 16.8 120 729-868 2-129 (140)
74 3kht_A Response regulator; PSI 99.7 2.4E-17 8.4E-22 158.0 15.4 119 729-868 5-126 (144)
75 3jte_A Response regulator rece 99.7 3.2E-17 1.1E-21 156.9 15.4 117 730-868 4-121 (143)
76 3c3m_A Response regulator rece 99.7 2.6E-17 8.8E-22 156.9 14.7 120 730-870 4-123 (138)
77 3hdg_A Uncharacterized protein 99.7 1.8E-17 6.1E-22 157.5 13.2 118 729-869 7-124 (137)
78 3lte_A Response regulator; str 99.7 3.9E-17 1.3E-21 153.9 15.1 121 729-871 6-126 (132)
79 1yio_A Response regulatory pro 99.7 2.2E-17 7.6E-22 169.0 14.4 117 729-868 4-120 (208)
80 3a10_A Response regulator; pho 99.7 1.9E-17 6.4E-22 152.4 12.4 114 730-868 2-115 (116)
81 3nhm_A Response regulator; pro 99.7 2.4E-17 8.4E-22 155.5 13.3 118 729-869 4-121 (133)
82 3eul_A Possible nitrate/nitrit 99.7 3.1E-17 1.1E-21 159.0 14.1 121 728-871 14-136 (152)
83 2jba_A Phosphate regulon trans 99.7 1.2E-17 4.2E-22 156.1 10.9 120 730-870 3-122 (127)
84 2qxy_A Response regulator; reg 99.7 4.3E-17 1.5E-21 155.8 14.3 118 729-870 4-121 (142)
85 1zh2_A KDP operon transcriptio 99.7 3.1E-17 1E-21 151.8 12.8 115 731-869 3-117 (121)
86 3q9s_A DNA-binding response re 99.7 2.8E-17 9.5E-22 173.9 14.0 118 729-870 37-154 (249)
87 1dz3_A Stage 0 sporulation pro 99.7 2.3E-17 7.8E-22 155.3 11.7 119 730-870 3-123 (130)
88 3kcn_A Adenylate cyclase homol 99.7 5.2E-17 1.8E-21 157.3 14.4 117 729-868 4-121 (151)
89 3cnb_A DNA-binding response re 99.7 7.6E-17 2.6E-21 153.8 15.2 121 729-870 8-130 (143)
90 1k66_A Phytochrome response re 99.7 7.1E-17 2.4E-21 155.0 14.8 120 729-868 6-136 (149)
91 1a04_A Nitrate/nitrite respons 99.7 6.5E-17 2.2E-21 166.5 14.5 117 730-869 6-124 (215)
92 2rjn_A Response regulator rece 99.7 1.6E-16 5.4E-21 154.3 16.3 118 728-868 6-124 (154)
93 1w25_A Stalked-cell differenti 99.7 1.2E-15 4.2E-20 175.8 26.6 257 582-867 2-267 (459)
94 2zbk_B Type 2 DNA topoisomeras 99.7 2.6E-17 8.9E-22 190.0 12.1 118 388-555 23-148 (530)
95 3eqz_A Response regulator; str 99.7 5.1E-17 1.7E-21 153.4 12.0 120 729-872 3-127 (135)
96 3cu5_A Two component transcrip 99.7 4.8E-17 1.7E-21 155.8 12.0 116 730-868 3-121 (141)
97 1qkk_A DCTD, C4-dicarboxylate 99.7 1.8E-16 6.1E-21 154.1 15.9 117 729-868 3-119 (155)
98 2zay_A Response regulator rece 99.7 7E-17 2.4E-21 155.3 12.8 119 729-868 8-126 (147)
99 3eq2_A Probable two-component 99.7 2.9E-17 9.9E-22 185.7 11.7 116 730-868 6-122 (394)
100 3cz5_A Two-component response 99.7 1.4E-16 4.9E-21 154.4 14.2 121 729-872 5-127 (153)
101 1mu5_A Type II DNA topoisomera 99.7 5.6E-17 1.9E-21 185.3 13.2 117 389-555 26-149 (471)
102 2qr3_A Two-component system re 99.7 1.6E-16 5.6E-21 151.1 14.1 118 730-870 4-126 (140)
103 1s8n_A Putative antiterminator 99.7 6.7E-17 2.3E-21 165.2 12.2 116 729-868 13-129 (205)
104 3cg4_A Response regulator rece 99.7 7.1E-17 2.4E-21 154.1 11.2 119 729-868 7-125 (142)
105 3n53_A Response regulator rece 99.7 4.3E-17 1.5E-21 155.6 9.5 117 730-868 4-120 (140)
106 1kgs_A DRRD, DNA binding respo 99.7 8.6E-17 3E-21 166.5 12.6 116 730-868 3-118 (225)
107 1w25_A Stalked-cell differenti 99.7 1.2E-16 4.1E-21 184.2 14.8 118 730-868 2-119 (459)
108 2qvg_A Two component response 99.7 2.7E-16 9.2E-21 150.3 14.6 121 729-869 7-134 (143)
109 2jk1_A HUPR, hydrogenase trans 99.7 2E-16 6.9E-21 150.7 13.6 115 730-868 2-117 (139)
110 3cg0_A Response regulator rece 99.7 2.1E-16 7E-21 150.4 13.4 116 729-868 9-126 (140)
111 3kyj_B CHEY6 protein, putative 99.7 8.3E-17 2.8E-21 154.6 10.1 110 728-860 12-125 (145)
112 1ny5_A Transcriptional regulat 99.7 1.5E-16 5.3E-21 179.0 13.7 115 731-868 2-116 (387)
113 2gkg_A Response regulator homo 99.7 2.9E-16 1E-20 146.2 13.1 119 730-870 6-125 (127)
114 2gwr_A DNA-binding response re 99.7 2.9E-16 9.9E-21 164.5 14.4 118 730-871 6-123 (238)
115 1th8_A Anti-sigma F factor; SP 99.7 2E-16 6.7E-21 152.7 11.9 103 391-556 35-141 (145)
116 2rdm_A Response regulator rece 99.7 6.4E-16 2.2E-20 145.3 14.5 119 729-871 5-124 (132)
117 1ys7_A Transcriptional regulat 99.7 2E-16 6.9E-21 164.7 12.0 116 730-868 8-123 (233)
118 3klo_A Transcriptional regulat 99.7 5.6E-17 1.9E-21 168.5 7.6 119 730-870 8-129 (225)
119 2qsj_A DNA-binding response re 99.7 3.7E-16 1.3E-20 151.6 12.8 120 730-871 4-125 (154)
120 2j48_A Two-component sensor ki 99.7 5.4E-16 1.8E-20 142.1 12.9 117 730-870 2-118 (119)
121 2oqr_A Sensory transduction pr 99.7 3.4E-16 1.2E-20 162.7 13.0 117 730-870 5-121 (230)
122 3c97_A Signal transduction his 99.7 3E-16 1E-20 149.8 10.8 120 730-870 11-130 (140)
123 3t8y_A CHEB, chemotaxis respon 99.6 8.4E-16 2.9E-20 151.3 13.9 120 729-872 25-157 (164)
124 2pln_A HP1043, response regula 99.6 1.8E-15 6.1E-20 143.6 15.1 117 727-871 16-134 (137)
125 1p2f_A Response regulator; DRR 99.6 8.8E-16 3E-20 158.6 13.9 113 731-869 4-116 (220)
126 2qv0_A Protein MRKE; structura 99.6 1.4E-15 4.9E-20 145.3 14.1 115 729-868 9-125 (143)
127 3bre_A Probable two-component 99.6 4.3E-16 1.5E-20 173.4 11.6 117 730-867 19-136 (358)
128 2b4a_A BH3024; flavodoxin-like 99.6 9.2E-16 3.1E-20 145.8 11.5 117 728-871 14-132 (138)
129 1qo0_D AMIR; binding protein, 99.6 5.1E-16 1.7E-20 157.4 9.7 113 728-868 11-123 (196)
130 3sy8_A ROCR; TIM barrel phosph 99.6 2.8E-16 9.5E-21 178.0 8.2 118 730-869 4-127 (400)
131 3c3w_A Two component transcrip 99.6 2.1E-16 7.2E-21 164.3 5.9 115 731-868 3-119 (225)
132 1dc7_A NTRC, nitrogen regulati 99.6 4.8E-17 1.6E-21 151.1 0.8 117 730-869 4-120 (124)
133 3luf_A Two-component system re 99.6 1.3E-15 4.4E-20 162.1 9.6 103 730-858 5-108 (259)
134 2hqr_A Putative transcriptiona 99.6 9.1E-15 3.1E-19 151.2 14.7 114 731-871 2-116 (223)
135 1a2o_A CHEB methylesterase; ba 99.5 3.8E-14 1.3E-18 157.0 13.3 115 730-868 4-131 (349)
136 2vyc_A Biodegradative arginine 99.5 2.9E-14 1E-18 173.3 10.0 114 731-866 2-129 (755)
137 2q2e_B Type 2 DNA topoisomeras 99.5 8.4E-14 2.9E-18 162.8 10.0 115 389-555 31-155 (621)
138 3cwo_X Beta/alpha-barrel prote 98.9 4.3E-10 1.5E-14 116.7 3.6 93 754-869 6-100 (237)
139 1kij_A DNA gyrase subunit B; t 98.5 5.9E-08 2E-12 108.3 5.4 86 390-532 31-128 (390)
140 1b63_A MUTL; DNA mismatch repa 98.4 4.8E-07 1.6E-11 99.1 9.7 89 395-543 24-118 (333)
141 3zcc_A HAMP, osmolarity sensor 98.4 1.8E-06 6.3E-11 77.9 10.7 68 266-338 46-113 (114)
142 1h7s_A PMS1 protein homolog 2; 98.3 1E-06 3.4E-11 97.5 9.5 88 395-542 34-127 (365)
143 3na3_A DNA mismatch repair pro 98.3 2E-06 6.7E-11 93.9 10.5 89 395-543 28-122 (348)
144 3ke6_A Protein RV1364C/MT1410; 98.2 1.3E-06 4.4E-11 98.4 7.3 90 392-555 294-387 (399)
145 3to5_A CHEY homolog; alpha(5)b 98.0 1.7E-05 6E-10 74.8 10.1 120 580-705 11-131 (134)
146 3h4l_A DNA mismatch repair pro 97.9 1.1E-05 3.6E-10 88.9 7.3 95 395-549 25-127 (367)
147 3zrx_A AF1503 protein, osmolar 97.7 8.8E-05 3E-09 66.5 8.3 61 274-339 54-114 (115)
148 1ixm_A SPO0B, protein (sporula 97.7 0.00026 8.9E-09 70.8 12.0 42 282-327 23-64 (192)
149 3cwo_X Beta/alpha-barrel prote 97.6 1.7E-05 5.8E-10 81.6 2.9 206 608-866 8-222 (237)
150 2wer_A ATP-dependent molecular 97.6 5.5E-05 1.9E-09 77.7 6.0 58 481-542 74-141 (220)
151 3hzh_A Chemotaxis response reg 97.5 0.0003 1E-08 67.4 9.7 120 580-705 35-155 (157)
152 2ayx_A Sensor kinase protein R 97.4 0.00032 1.1E-08 73.5 9.5 97 726-868 8-104 (254)
153 3r0j_A Possible two component 97.3 0.00098 3.3E-08 69.3 11.6 140 544-706 1-140 (250)
154 3gl9_A Response regulator; bet 97.3 0.0021 7.2E-08 58.5 11.9 118 582-705 3-120 (122)
155 1qy5_A Endoplasmin; GRP94, NEC 97.2 5.4E-05 1.8E-09 79.7 0.6 58 481-542 76-148 (269)
156 1yc1_A HSP 86, heat shock prot 97.2 0.0004 1.4E-08 72.9 7.0 58 481-542 116-183 (264)
157 1dcf_A ETR1 protein; beta-alph 97.2 0.003 1E-07 58.4 12.0 121 579-706 5-128 (136)
158 3grc_A Sensor protein, kinase; 97.1 0.004 1.4E-07 57.8 12.3 121 581-706 6-126 (140)
159 3i42_A Response regulator rece 97.1 0.0037 1.3E-07 56.9 11.6 119 581-706 3-121 (127)
160 2ior_A Chaperone protein HTPG; 97.1 0.00013 4.4E-09 75.6 1.7 58 481-542 95-164 (235)
161 2lpm_A Two-component response 97.1 0.00077 2.6E-08 62.3 6.7 112 580-704 7-119 (123)
162 3cg4_A Response regulator rece 97.1 0.0089 3E-07 55.4 14.3 121 580-706 6-126 (142)
163 1s16_A Topoisomerase IV subuni 97.0 0.00069 2.4E-08 75.3 6.8 50 481-530 64-125 (390)
164 3h1g_A Chemotaxis protein CHEY 97.0 0.0035 1.2E-07 57.4 10.4 122 580-706 4-126 (129)
165 3gt7_A Sensor protein; structu 97.0 0.0043 1.5E-07 58.9 11.0 122 580-707 6-127 (154)
166 3nhm_A Response regulator; pro 96.9 0.015 5.3E-07 53.1 14.5 119 581-707 4-122 (133)
167 3h5i_A Response regulator/sens 96.9 0.012 4.1E-07 54.7 13.8 120 580-706 4-123 (140)
168 3t6k_A Response regulator rece 96.9 0.005 1.7E-07 57.1 10.5 121 581-707 4-124 (136)
169 1k68_A Phytochrome response re 96.9 0.0053 1.8E-07 56.5 10.7 122 581-706 2-130 (140)
170 3n0r_A Response regulator; sig 96.9 0.012 4E-07 62.7 14.7 116 581-707 160-277 (286)
171 3lua_A Response regulator rece 96.9 0.0039 1.3E-07 57.9 9.7 122 581-707 4-127 (140)
172 3m6m_D Sensory/regulatory prot 96.8 0.0053 1.8E-07 57.6 10.3 122 578-705 11-134 (143)
173 2gkg_A Response regulator homo 96.8 0.013 4.3E-07 52.9 12.4 118 582-706 6-124 (127)
174 3heb_A Response regulator rece 96.8 0.0074 2.5E-07 56.9 11.2 121 581-705 4-133 (152)
175 3ilh_A Two component response 96.8 0.0053 1.8E-07 57.1 9.9 124 580-707 8-139 (146)
176 3f6p_A Transcriptional regulat 96.7 0.01 3.4E-07 53.6 11.0 116 582-706 3-118 (120)
177 3eod_A Protein HNR; response r 96.7 0.0079 2.7E-07 54.9 10.4 120 579-706 5-125 (130)
178 3lte_A Response regulator; str 96.7 0.012 4.2E-07 53.7 11.7 121 580-707 5-125 (132)
179 3hdv_A Response regulator; PSI 96.7 0.012 4.2E-07 54.1 11.4 121 581-707 7-127 (136)
180 3jte_A Response regulator rece 96.6 0.013 4.5E-07 54.4 11.6 120 581-706 3-122 (143)
181 3mm4_A Histidine kinase homolo 96.6 0.0063 2.2E-07 61.2 9.9 166 527-706 15-195 (206)
182 1k66_A Phytochrome response re 96.6 0.011 3.7E-07 55.1 10.8 123 580-706 5-137 (149)
183 2qvg_A Two component response 96.6 0.014 4.9E-07 54.1 11.5 124 581-708 7-136 (143)
184 3c3m_A Response regulator rece 96.6 0.025 8.4E-07 52.3 13.1 120 582-707 4-123 (138)
185 3cnb_A DNA-binding response re 96.6 0.013 4.5E-07 54.2 11.2 122 580-707 7-130 (143)
186 1jbe_A Chemotaxis protein CHEY 96.6 0.012 4E-07 53.5 10.6 119 581-705 4-123 (128)
187 2b4a_A BH3024; flavodoxin-like 96.6 0.031 1.1E-06 51.5 13.6 118 578-706 12-130 (138)
188 2zay_A Response regulator rece 96.6 0.0089 3E-07 55.9 9.7 121 580-706 7-127 (147)
189 2rjn_A Response regulator rece 96.6 0.016 5.3E-07 54.8 11.5 121 579-706 5-125 (154)
190 1mb3_A Cell division response 96.5 0.017 5.7E-07 52.0 11.1 119 582-706 2-120 (124)
191 3kht_A Response regulator; PSI 96.5 0.015 5.3E-07 54.1 11.1 121 580-706 4-127 (144)
192 2jba_A Phosphate regulon trans 96.5 0.02 6.8E-07 51.7 11.5 119 582-706 3-121 (127)
193 3c97_A Signal transduction his 96.5 0.034 1.2E-06 51.4 13.4 117 581-706 10-129 (140)
194 2pln_A HP1043, response regula 96.5 0.019 6.5E-07 52.9 11.3 118 577-706 14-132 (137)
195 2r25_B Osmosensing histidine p 96.4 0.016 5.5E-07 53.3 10.4 120 582-706 3-126 (133)
196 3a10_A Response regulator; pho 96.4 0.052 1.8E-06 48.1 13.5 114 582-705 2-115 (116)
197 3t0h_A Heat shock protein HSP 96.4 0.0013 4.3E-08 67.5 2.8 60 481-544 80-149 (228)
198 2rdm_A Response regulator rece 96.4 0.064 2.2E-06 48.7 14.3 121 580-708 4-124 (132)
199 3hv2_A Response regulator/HD d 96.4 0.021 7.2E-07 53.8 11.3 119 580-706 13-132 (153)
200 3cg0_A Response regulator rece 96.4 0.023 7.8E-07 52.4 11.3 118 580-706 8-127 (140)
201 3n53_A Response regulator rece 96.4 0.042 1.5E-06 50.7 13.0 119 581-706 3-121 (140)
202 4dad_A Putative pilus assembly 96.3 0.011 3.7E-07 55.2 8.8 125 577-707 16-141 (146)
203 1i3c_A Response regulator RCP1 96.3 0.027 9.1E-07 52.9 11.5 122 581-706 8-136 (149)
204 2j48_A Two-component sensor ki 96.3 0.016 5.4E-07 51.3 9.4 116 581-705 1-116 (119)
205 3kto_A Response regulator rece 96.2 0.014 4.9E-07 53.8 8.9 121 581-707 6-126 (136)
206 2qr3_A Two-component system re 96.2 0.027 9.3E-07 51.8 10.7 122 581-707 3-126 (140)
207 3rqi_A Response regulator prot 96.2 0.0094 3.2E-07 58.6 7.9 119 579-705 5-123 (184)
208 1dbw_A Transcriptional regulat 96.2 0.051 1.7E-06 49.1 12.3 118 581-706 3-120 (126)
209 1p6q_A CHEY2; chemotaxis, sign 96.2 0.014 4.6E-07 53.1 8.3 120 581-706 6-126 (129)
210 1tmy_A CHEY protein, TMY; chem 96.1 0.032 1.1E-06 49.8 10.7 116 581-704 2-118 (120)
211 4e7p_A Response regulator; DNA 96.1 0.038 1.3E-06 51.8 11.5 120 579-706 18-139 (150)
212 2pl1_A Transcriptional regulat 96.1 0.039 1.3E-06 49.2 11.0 116 582-705 1-116 (121)
213 3snk_A Response regulator CHEY 96.1 0.01 3.5E-07 54.7 7.1 119 580-706 13-132 (135)
214 2qxy_A Response regulator; reg 96.1 0.033 1.1E-06 51.5 10.7 118 581-707 4-121 (142)
215 3f6c_A Positive transcription 96.0 0.032 1.1E-06 50.9 10.2 118 582-707 2-120 (134)
216 1srr_A SPO0F, sporulation resp 96.0 0.034 1.2E-06 50.1 10.2 117 582-706 4-120 (124)
217 3crn_A Response regulator rece 96.0 0.057 1.9E-06 49.3 11.6 117 582-706 4-120 (132)
218 1mvo_A PHOP response regulator 95.9 0.063 2.1E-06 49.1 11.8 118 582-707 4-121 (136)
219 1ys7_A Transcriptional regulat 95.9 0.13 4.5E-06 52.0 15.4 118 581-706 7-124 (233)
220 3hdg_A Uncharacterized protein 95.9 0.018 6.3E-07 52.9 8.1 118 581-706 7-124 (137)
221 1qkk_A DCTD, C4-dicarboxylate 95.9 0.037 1.3E-06 52.1 10.4 118 581-706 3-120 (155)
222 2qzj_A Two-component response 95.9 0.039 1.3E-06 50.9 10.3 117 581-706 4-120 (136)
223 3n75_A LDC, lysine decarboxyla 95.9 0.0043 1.5E-07 74.3 4.3 92 743-859 20-111 (715)
224 1xhf_A DYE resistance, aerobic 95.9 0.045 1.5E-06 49.1 10.3 115 582-705 4-118 (123)
225 1ei1_A DNA gyrase B, GYRB; ATP 95.8 0.0063 2.2E-07 67.5 5.2 50 481-530 67-128 (391)
226 1zgz_A Torcad operon transcrip 95.8 0.06 2E-06 48.2 11.0 115 582-705 3-117 (122)
227 3peh_A Endoplasmin homolog; st 95.8 0.0076 2.6E-07 63.2 5.1 58 481-542 94-162 (281)
228 3kcn_A Adenylate cyclase homol 95.7 0.048 1.6E-06 51.2 10.2 118 581-706 4-122 (151)
229 3o0i_A HSP90AA1 protein; HSP90 95.7 0.0029 1E-07 65.6 1.6 58 481-542 108-175 (256)
230 2gqp_A Endoplasmin; GRP94, HSP 95.6 0.0036 1.2E-07 64.6 2.1 59 481-543 80-153 (236)
231 3eul_A Possible nitrate/nitrit 95.6 0.069 2.4E-06 50.0 11.0 122 578-707 12-135 (152)
232 1y4s_A Chaperone protein HTPG; 95.6 0.022 7.5E-07 65.9 8.7 47 481-527 75-133 (559)
233 1kgs_A DRRD, DNA binding respo 95.6 0.1 3.5E-06 52.5 12.9 117 582-706 3-119 (225)
234 3cz5_A Two-component response 95.5 0.077 2.6E-06 49.8 10.9 119 580-706 4-124 (153)
235 2a9o_A Response regulator; ess 95.5 0.066 2.2E-06 47.6 9.7 116 582-706 2-117 (120)
236 2cg9_A ATP-dependent molecular 95.5 0.02 6.9E-07 67.3 7.7 44 481-524 74-127 (677)
237 3fv5_A DNA topoisomerase 4 sub 95.4 0.011 3.7E-07 59.5 4.6 49 481-529 50-110 (201)
238 1s8n_A Putative antiterminator 95.3 0.093 3.2E-06 52.1 11.2 116 582-706 14-130 (205)
239 3dzd_A Transcriptional regulat 95.3 0.053 1.8E-06 59.8 10.1 117 582-706 1-117 (368)
240 1a2o_A CHEB methylesterase; ba 95.3 0.22 7.4E-06 54.4 14.9 188 582-799 4-206 (349)
241 3eqz_A Response regulator; str 95.2 0.042 1.5E-06 50.0 7.8 120 581-708 3-126 (135)
242 1yio_A Response regulatory pro 95.2 0.11 3.8E-06 51.6 11.5 118 581-706 4-121 (208)
243 3cfy_A Putative LUXO repressor 95.2 0.073 2.5E-06 49.1 9.4 116 583-706 6-121 (137)
244 2qsj_A DNA-binding response re 95.2 0.12 4E-06 48.5 10.9 120 581-707 3-124 (154)
245 3b2n_A Uncharacterized protein 95.0 0.15 5.2E-06 46.5 10.7 117 582-706 4-122 (133)
246 3nmq_A Heat shock protein HSP 94.9 0.0073 2.5E-07 62.0 1.6 57 481-542 87-154 (239)
247 2qv0_A Protein MRKE; structura 94.9 0.21 7.2E-06 45.9 11.7 116 581-706 9-126 (143)
248 1dz3_A Stage 0 sporulation pro 94.9 0.093 3.2E-06 47.6 9.0 118 582-706 3-122 (130)
249 2gwr_A DNA-binding response re 94.8 0.12 4E-06 52.8 10.6 117 582-707 6-122 (238)
250 3cu5_A Two component transcrip 94.8 0.27 9.2E-06 45.4 12.1 117 582-706 3-122 (141)
251 3kyj_B CHEY6 protein, putative 94.7 0.078 2.7E-06 49.2 8.2 109 580-695 12-123 (145)
252 1zh2_A KDP operon transcriptio 94.7 0.12 4.1E-06 45.9 9.2 115 582-705 2-116 (121)
253 3q9s_A DNA-binding response re 94.7 0.11 3.8E-06 53.6 10.1 119 580-707 36-154 (249)
254 2o1u_A Endoplasmin; GRP94, HSP 94.6 0.02 6.7E-07 67.4 4.3 22 481-502 93-114 (666)
255 3cwv_A DNA gyrase, B subunit, 94.6 0.066 2.3E-06 58.8 8.3 29 392-420 27-58 (369)
256 3q7r_A Transcriptional regulat 94.4 0.31 1.1E-05 42.0 10.0 105 730-870 13-118 (121)
257 1qo0_D AMIR; binding protein, 94.3 0.055 1.9E-06 53.4 6.4 114 579-705 10-123 (196)
258 3t8y_A CHEB, chemotaxis respon 94.3 0.21 7.2E-06 47.6 10.3 120 580-707 24-155 (164)
259 2ioq_A Chaperone protein HTPG; 94.2 0.028 9.7E-07 65.8 4.6 57 481-541 75-143 (624)
260 2hqr_A Putative transcriptiona 94.2 0.14 4.7E-06 51.5 9.1 114 582-707 1-115 (223)
261 2jk1_A HUPR, hydrogenase trans 94.1 0.23 8E-06 45.5 10.0 115 583-705 3-117 (139)
262 1dc7_A NTRC, nitrogen regulati 94.1 0.11 3.7E-06 46.3 7.3 117 582-706 4-120 (124)
263 1ny5_A Transcriptional regulat 93.9 0.21 7.3E-06 55.3 10.9 116 582-705 1-116 (387)
264 2oqr_A Sensory transduction pr 93.9 0.14 4.8E-06 51.7 8.7 117 582-707 5-121 (230)
265 1p2f_A Response regulator; DRR 93.5 0.18 6.1E-06 50.6 8.6 115 582-707 3-117 (220)
266 1a04_A Nitrate/nitrite respons 93.5 0.3 1E-05 48.7 10.2 119 581-707 5-125 (215)
267 3sy8_A ROCR; TIM barrel phosph 92.8 0.33 1.1E-05 54.0 10.0 118 582-706 4-127 (400)
268 3eq2_A Probable two-component 92.8 0.2 6.7E-06 55.5 8.2 116 581-704 5-121 (394)
269 4emv_A DNA topoisomerase IV, B 92.7 0.13 4.3E-06 52.5 5.8 50 481-530 73-133 (226)
270 4duh_A DNA gyrase subunit B; s 92.5 0.13 4.4E-06 52.3 5.6 49 482-530 69-129 (220)
271 3klo_A Transcriptional regulat 90.9 1.1 3.6E-05 45.0 10.6 120 581-706 7-128 (225)
272 3c3w_A Two component transcrip 90.6 0.27 9.1E-06 49.7 5.6 117 582-706 2-120 (225)
273 3bre_A Probable two-component 90.1 0.48 1.7E-05 51.3 7.6 116 582-703 19-135 (358)
274 3ttz_A DNA gyrase subunit B; p 90.1 0.36 1.2E-05 48.1 6.0 29 392-420 28-59 (198)
275 1wv2_A Thiazole moeity, thiazo 89.9 1.5 5.2E-05 45.0 10.3 82 744-851 126-214 (265)
276 1pvg_A DNA topoisomerase II; G 89.6 0.46 1.6E-05 52.9 6.8 67 481-551 99-178 (418)
277 1zxm_A TOPO IIA ATPase, DNA to 89.6 0.49 1.7E-05 52.4 7.1 49 481-529 87-147 (400)
278 2yxb_A Coenzyme B12-dependent 89.6 3.1 0.00011 39.8 11.9 117 729-868 18-143 (161)
279 3ied_A Heat shock protein; HSP 85.5 0.38 1.3E-05 49.5 2.8 56 481-540 131-197 (272)
280 3lnu_A Topoisomerase IV subuni 84.0 1 3.4E-05 49.9 5.5 50 482-531 84-145 (408)
281 2htm_A Thiazole biosynthesis p 78.4 7.3 0.00025 40.1 9.1 95 745-864 116-223 (268)
282 3q58_A N-acetylmannosamine-6-p 75.0 14 0.00047 37.4 10.3 88 739-852 115-209 (229)
283 2vyc_A Biodegradative arginine 73.6 6.6 0.00023 47.3 8.7 111 582-696 1-121 (755)
284 2i2x_B MTAC, methyltransferase 72.6 26 0.00087 36.0 11.8 112 729-869 123-243 (258)
285 1ccw_A Protein (glutamate muta 69.6 22 0.00074 32.7 9.4 110 736-867 14-133 (137)
286 3igs_A N-acetylmannosamine-6-p 68.3 25 0.00085 35.5 10.4 88 739-852 115-209 (232)
287 3ezx_A MMCP 1, monomethylamine 66.4 23 0.00077 35.4 9.5 102 729-854 92-204 (215)
288 4gfh_A DNA topoisomerase 2; to 66.0 9.4 0.00032 48.0 7.8 50 481-530 94-155 (1177)
289 4dah_A Sporulation kinase D; a 65.3 36 0.0012 33.2 10.9 66 91-168 94-159 (217)
290 1y80_A Predicted cobalamin bin 64.0 22 0.00075 35.1 8.9 102 729-854 88-198 (210)
291 1geq_A Tryptophan synthase alp 62.4 13 0.00045 37.7 7.1 35 824-858 80-120 (248)
292 3l4e_A Uncharacterized peptida 61.9 19 0.00064 35.7 7.8 65 728-799 26-100 (206)
293 3lib_A Hypothetical sensory tr 56.1 55 0.0019 33.4 10.8 60 90-163 119-178 (290)
294 3rht_A (gatase1)-like protein; 51.6 5.8 0.0002 41.0 2.1 66 730-799 5-75 (259)
295 2oo3_A Protein involved in cat 50.6 15 0.00052 38.3 5.0 71 728-798 112-184 (283)
296 3ffs_A Inosine-5-monophosphate 49.2 1.6E+02 0.0056 32.1 13.3 100 730-851 157-273 (400)
297 1req_A Methylmalonyl-COA mutas 48.6 93 0.0032 36.8 11.8 115 729-866 596-719 (727)
298 3f4w_A Putative hexulose 6 pho 48.4 76 0.0026 30.9 9.8 108 732-866 80-205 (211)
299 3fwz_A Inner membrane protein 48.2 90 0.0031 28.1 9.7 94 729-852 30-124 (140)
300 2xij_A Methylmalonyl-COA mutas 43.9 1.1E+02 0.0037 36.5 11.4 116 730-868 605-729 (762)
301 1geq_A Tryptophan synthase alp 43.3 73 0.0025 32.0 9.0 86 741-853 121-220 (248)
302 3nav_A Tryptophan synthase alp 41.7 22 0.00074 37.0 4.6 50 788-859 83-138 (271)
303 3lif_A Putative diguanylate cy 41.0 47 0.0016 33.1 7.1 66 91-168 94-161 (254)
304 2w6r_A Imidazole glycerol phos 40.3 61 0.0021 33.0 7.9 40 824-863 200-245 (266)
305 1yad_A Regulatory protein TENI 39.0 93 0.0032 30.6 8.8 68 758-851 116-190 (221)
306 3qja_A IGPS, indole-3-glycerol 39.0 3.3E+02 0.011 27.8 14.3 102 742-867 151-261 (272)
307 4fo4_A Inosine 5'-monophosphat 38.4 1.7E+02 0.0057 31.6 11.2 100 730-852 121-239 (366)
308 3o63_A Probable thiamine-phosp 38.4 99 0.0034 31.3 8.9 86 758-867 141-238 (243)
309 1xrs_B D-lysine 5,6-aminomutas 38.3 1.3E+02 0.0045 30.8 9.8 112 730-865 121-253 (262)
310 3tsm_A IGPS, indole-3-glycerol 37.2 3.1E+02 0.01 28.2 12.5 97 742-862 158-263 (272)
311 2gjl_A Hypothetical protein PA 37.1 2.2E+02 0.0076 29.8 11.9 81 746-851 111-199 (328)
312 3vnd_A TSA, tryptophan synthas 37.0 22 0.00075 36.8 3.7 38 823-860 94-137 (267)
313 1xm3_A Thiazole biosynthesis p 36.2 30 0.001 35.6 4.6 74 753-852 126-206 (264)
314 3c8c_A Methyl-accepting chemot 36.1 62 0.0021 31.4 6.9 63 91-163 88-150 (240)
315 3khj_A Inosine-5-monophosphate 35.5 1.6E+02 0.0054 31.7 10.5 89 740-851 132-234 (361)
316 1qop_A Tryptophan synthase alp 35.4 29 0.00098 35.9 4.3 39 824-862 94-138 (268)
317 1xi3_A Thiamine phosphate pyro 35.2 91 0.0031 30.3 8.0 67 759-851 115-188 (215)
318 2ekc_A AQ_1548, tryptophan syn 34.7 42 0.0014 34.5 5.4 42 824-865 94-141 (262)
319 3li9_A Hypothetical sensory tr 34.6 45 0.0015 34.1 5.8 60 90-163 120-179 (291)
320 2v82_A 2-dehydro-3-deoxy-6-pho 34.5 64 0.0022 31.6 6.7 79 747-852 95-175 (212)
321 1ka9_F Imidazole glycerol phos 34.0 1E+02 0.0035 30.9 8.3 54 790-866 185-244 (252)
322 3ovp_A Ribulose-phosphate 3-ep 33.8 94 0.0032 31.1 7.8 83 745-852 104-196 (228)
323 2kx7_A Sensor-like histidine k 32.7 51 0.0018 29.1 4.7 50 726-782 4-53 (117)
324 3lic_A Sensor protein; PDC fol 32.4 47 0.0016 33.5 5.4 58 94-163 117-175 (274)
325 3cvo_A Methyltransferase-like 31.5 69 0.0023 31.6 6.1 26 729-754 51-76 (202)
326 3kp1_A D-ornithine aminomutase 30.6 2E+02 0.0069 33.3 10.3 114 729-866 602-731 (763)
327 3l9w_A Glutathione-regulated p 30.4 1.2E+02 0.0041 33.3 8.6 97 729-855 27-124 (413)
328 3dr5_A Putative O-methyltransf 30.4 88 0.003 30.9 6.9 67 729-798 81-151 (221)
329 2xxa_A Signal recognition part 30.1 90 0.0031 34.6 7.5 53 729-782 129-191 (433)
330 1rd5_A Tryptophan synthase alp 29.0 42 0.0014 34.3 4.3 81 763-867 35-139 (262)
331 3tfw_A Putative O-methyltransf 28.7 1.1E+02 0.0037 30.7 7.3 68 729-798 88-158 (248)
332 1uir_A Polyamine aminopropyltr 27.8 1.8E+02 0.0061 30.4 9.2 69 729-799 101-184 (314)
333 1eep_A Inosine 5'-monophosphat 27.0 3.2E+02 0.011 29.5 11.4 91 740-852 180-284 (404)
334 1fy2_A Aspartyl dipeptidase; s 27.0 1.5E+02 0.0052 29.5 8.0 59 730-798 32-99 (229)
335 3bo9_A Putative nitroalkan dio 27.0 2.5E+02 0.0086 29.5 10.2 81 746-851 117-203 (326)
336 3r75_A Anthranilate/para-amino 27.0 1.2E+02 0.0042 35.4 8.2 49 727-780 444-492 (645)
337 1thf_D HISF protein; thermophI 26.4 1.1E+02 0.0039 30.6 7.0 70 774-866 164-243 (253)
338 1h5y_A HISF; histidine biosynt 26.0 2E+02 0.0068 28.4 8.9 43 824-866 198-246 (253)
339 1x1o_A Nicotinate-nucleotide p 25.8 1.6E+02 0.0053 30.7 7.9 90 732-850 169-265 (286)
340 1tqx_A D-ribulose-5-phosphate 25.6 2.4E+02 0.0082 28.1 9.1 82 748-852 109-200 (227)
341 2w6r_A Imidazole glycerol phos 25.5 1E+02 0.0034 31.3 6.5 41 824-864 74-120 (266)
342 3c3y_A Pfomt, O-methyltransfer 25.5 1.6E+02 0.0055 29.1 8.0 68 729-798 95-169 (237)
343 4gud_A Imidazole glycerol phos 25.4 1.6E+02 0.0054 28.6 7.7 44 730-780 3-46 (211)
344 2v5j_A 2,4-dihydroxyhept-2-ENE 25.3 5.7E+02 0.019 26.2 12.8 100 745-867 30-133 (287)
345 1j8m_F SRP54, signal recogniti 25.1 1.1E+02 0.0036 32.0 6.6 58 729-789 126-193 (297)
346 2pyy_A Ionotropic glutamate re 24.7 1.3E+02 0.0046 28.4 7.1 50 727-782 110-159 (228)
347 2i7c_A Spermidine synthase; tr 24.6 2.2E+02 0.0075 29.1 9.0 69 729-799 102-181 (283)
348 4avf_A Inosine-5'-monophosphat 24.2 4.1E+02 0.014 29.7 11.7 99 731-852 243-360 (490)
349 2vws_A YFAU, 2-keto-3-deoxy su 23.8 5.8E+02 0.02 25.8 12.8 85 761-867 27-112 (267)
350 4dzz_A Plasmid partitioning pr 23.7 1.5E+02 0.0051 28.1 7.1 51 729-783 30-84 (206)
351 2tps_A Protein (thiamin phosph 23.6 2.4E+02 0.0081 27.5 8.7 68 759-851 123-198 (227)
352 2px2_A Genome polyprotein [con 23.6 56 0.0019 33.5 3.8 62 772-869 137-203 (269)
353 3bul_A Methionine synthase; tr 23.1 1.8E+02 0.006 33.5 8.4 56 729-785 98-160 (579)
354 2p9j_A Hypothetical protein AQ 23.0 2.1E+02 0.0073 25.8 7.8 43 824-866 52-95 (162)
355 3gjy_A Spermidine synthase; AP 22.9 2.1E+02 0.0071 30.2 8.4 69 729-798 113-188 (317)
356 3cbg_A O-methyltransferase; cy 22.9 1.7E+02 0.0059 28.7 7.6 68 729-798 97-170 (232)
357 3u81_A Catechol O-methyltransf 22.9 1.8E+02 0.0061 28.2 7.6 56 729-784 83-144 (221)
358 1ka9_F Imidazole glycerol phos 22.6 2.1E+02 0.0072 28.5 8.2 30 823-852 74-103 (252)
359 3vk5_A MOEO5; TIM barrel, tran 22.6 2E+02 0.0069 29.8 7.8 72 774-867 199-275 (286)
360 1tqj_A Ribulose-phosphate 3-ep 22.5 1.1E+02 0.0036 30.7 5.8 44 788-855 49-94 (230)
361 2z6i_A Trans-2-enoyl-ACP reduc 22.5 2.6E+02 0.009 29.4 9.3 80 747-851 104-189 (332)
362 2p10_A MLL9387 protein; putati 22.2 1.6E+02 0.0054 30.5 6.9 86 749-853 159-259 (286)
363 1sui_A Caffeoyl-COA O-methyltr 22.0 1.8E+02 0.0061 29.1 7.5 68 729-798 104-178 (247)
364 3usb_A Inosine-5'-monophosphat 21.8 4.8E+02 0.016 29.3 11.7 102 729-852 268-387 (511)
365 3r2g_A Inosine 5'-monophosphat 21.8 7.5E+02 0.026 26.4 13.8 95 730-851 113-226 (361)
366 3l0g_A Nicotinate-nucleotide p 21.6 1.3E+02 0.0045 31.4 6.3 66 756-850 211-276 (300)
367 2fpo_A Methylase YHHF; structu 21.6 2.9E+02 0.0098 26.4 8.7 67 730-798 78-146 (202)
368 2lci_A Protein OR36; structura 21.4 2.1E+02 0.0072 24.0 6.2 38 732-769 80-117 (134)
369 3s83_A Ggdef family protein; s 21.4 1.3E+02 0.0045 30.2 6.4 103 743-867 142-255 (259)
370 2avd_A Catechol-O-methyltransf 21.3 1.6E+02 0.0054 28.6 6.9 68 729-798 94-167 (229)
371 3duw_A OMT, O-methyltransferas 21.3 2E+02 0.0067 27.8 7.5 68 729-798 83-155 (223)
372 1iy9_A Spermidine synthase; ro 21.1 2E+02 0.0069 29.3 7.8 67 730-798 100-177 (275)
373 1ujp_A Tryptophan synthase alp 20.9 70 0.0024 33.0 4.1 43 824-866 91-142 (271)
374 3ajx_A 3-hexulose-6-phosphate 20.8 33 0.0011 33.6 1.5 56 780-857 29-88 (207)
375 3llv_A Exopolyphosphatase-rela 20.8 4.3E+02 0.015 23.2 11.4 93 729-852 29-122 (141)
376 3tr6_A O-methyltransferase; ce 20.7 2.3E+02 0.0079 27.2 7.9 68 729-798 89-162 (225)
377 2b2c_A Spermidine synthase; be 20.7 1.9E+02 0.0064 30.4 7.5 68 729-798 132-210 (314)
378 1qpo_A Quinolinate acid phosph 20.7 3.3E+02 0.011 28.1 9.2 71 755-851 197-267 (284)
379 1y0e_A Putative N-acetylmannos 20.6 1.1E+02 0.0038 30.0 5.5 29 824-852 175-203 (223)
380 4adt_A Pyridoxine biosynthetic 20.5 1.8E+02 0.006 30.4 7.1 29 824-852 207-237 (297)
381 3qz6_A HPCH/HPAI aldolase; str 20.3 5.4E+02 0.018 26.0 10.8 84 761-866 25-109 (261)
382 3c3p_A Methyltransferase; NP_9 20.3 3.2E+02 0.011 26.0 8.8 65 729-798 81-148 (210)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=7.4e-40 Score=349.03 Aligned_cols=232 Identities=26% Similarity=0.400 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 002821 271 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE---LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 347 (876)
Q Consensus 271 ~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~---l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~ 347 (876)
+++++.++.|.+|++++||||||||++|.|++++|.+.. .....+++++.+..++++|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 345566778899999999999999999999999886431 23456789999999999999999999999999999999
Q ss_pred eEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC----eEEEEEEEe
Q 002821 348 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLV 423 (876)
Q Consensus 348 l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~ 423 (876)
+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.|||.|||+||+||++.| .|.+.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 9999999999999999999999999999998887655566788999999999999999999999654 355544321
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccc
Q 002821 424 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 503 (876)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 503 (876)
...+.|+|+|+|+|||++.+++||+||
T Consensus 171 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f 197 (258)
T 2c2a_A 171 -----------------------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQF 197 (258)
T ss_dssp -----------------------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTT
T ss_pred -----------------------------------------------------CCeEEEEEEecCCCCCHHHHHhhcccc
Confidence 124789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 504 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 504 ~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
|+.+.+.+...+|+||||+|||++++.|||+|+++|.+|+||+|+|++|...
T Consensus 198 ~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 198 YRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 9988766666689999999999999999999999999999999999999754
No 2
>3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A*
Probab=100.00 E-value=2.4e-39 Score=345.20 Aligned_cols=216 Identities=63% Similarity=0.992 Sum_probs=197.1
Q ss_pred cccHHHHHHHHHHhhhhccCcccceehhccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCCccceeEeecCCcc
Q 002821 2 ARTRLLLIRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVS 81 (876)
Q Consensus 2 ~~~~~~f~~~~~~~~~~~p~~~~~~~~~~v~~~~r~~fe~~~~~~i~~~~~~~~~~~~~~~~~~~~~~y~pv~~~~~~~~ 81 (876)
.+|+++|..|+++++.++|+|+|++|+|+|++++|.+||++++|.|+++.. .+|++.|++|+||+|+++.|+
T Consensus 53 ~v~~~~F~~~a~~l~~~~pgi~~l~~ap~V~~~~r~~fe~~~~~~I~~~~~--------~~p~~~r~~y~pi~y~ep~N~ 124 (270)
T 3t4l_A 53 AIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDR--------GEPSPVRDEYAPVIFSQDSVS 124 (270)
T ss_dssp CCCHHHHHHHHHHTGGGCTTEEEEEEEECEEGGGHHHHHHHHTSCCBCTTT--------CCBCCCCSEECBEEEECGGGG
T ss_pred CCCHHHHHHHHHHHhhcCCCceEEEEEeecCHhHHHHHHhccCceeeccCC--------cccCCCCCccceEEEeCCCCc
Confidence 479999999999999999999999999999999999999999999988752 579999999999999999999
Q ss_pred eEEEeccCCChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeeeehHHHH
Q 002821 82 HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 161 (876)
Q Consensus 82 ~~~g~d~~s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~~v~~l~ 161 (876)
.++||||+|+|.||++|.+||+||++++|+|++|+|.++.|+++++|||+.+.+++.|+++|+++++|||+++|++++|+
T Consensus 125 ~alG~D~~S~p~rr~al~~Ar~tg~~~ls~pv~Lvq~~~~G~ll~~PVy~~~~~~~~t~~~R~~~~~G~v~~v~~~~~l~ 204 (270)
T 3t4l_A 125 YLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLV 204 (270)
T ss_dssp GGBTBBGGGSHHHHHHHHHHHHHSSCEECCCEECTTTCCEEEEEEEEEECTTCCSSCCHHHHHHTEEEEEEEEECHHHHH
T ss_pred cceeeccCCCHHHHHHHHHHHHhCCcEEecCeeeccCCCceEEEEEEeecCCCCCCCCHHHHHHHHhhEEEEEEEHHHHH
Confidence 99999999999999999999999999999999999978999999999999887767899999999999999999999999
Q ss_pred HHHHHHhhccCcEEEEeeccCCCCCceeecccccCCC--cceeEeeccCCCcccccceeeeecccC
Q 002821 162 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD--GLWLVSTLNFGDPFRKHEMRCRFKQKA 225 (876)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~d~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (876)
+.++.++...+.+.+.+||.++.+.+..+|++..... ++.+.+.++||+|+|+|+|+|+|++++
T Consensus 205 ~~~l~~~~~~~~l~l~i~D~~~~~~~~~ly~s~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 270 (270)
T 3t4l_A 205 ENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKA 270 (270)
T ss_dssp HHHHHTSTTGGGEEEEEEECSSTTSCEEEECC--CCCCTTCCEEEEECCSCTTCCEEEEEEECC--
T ss_pred HHHhhccccCCcEEEEEEECCCCCCCcccccCCCCCCCCcceEEEEeecCCchhhhheeeecccCC
Confidence 9999877655789999999998777889999877643 447899999999999999999999863
No 3
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=1.1e-34 Score=310.29 Aligned_cols=231 Identities=28% Similarity=0.442 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002821 266 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 344 (876)
Q Consensus 266 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g 344 (876)
+.+..++++++++.+.+|++.++|||||||++|.++++++.... .++..+++++.+..++++|..++++++++++++.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455666777778899999999999999999999999997644 56778899999999999999999999999999999
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEEe
Q 002821 345 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLV 423 (876)
Q Consensus 345 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~ 423 (876)
...+...++++.+++++++..+...+..+++.+.+.+++..+ .+.+|+..|.||+.||++||+||++. |.|.|.+...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999877654 58899999999999999999999976 7777776431
Q ss_pred eccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccc
Q 002821 424 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 503 (876)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF 503 (876)
...+.|+|.|+|+||+++.++++|+||
T Consensus 185 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~ 211 (268)
T 4ew8_A 185 -----------------------------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRF 211 (268)
T ss_dssp -----------------------------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTT
T ss_pred -----------------------------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 124789999999999999999999999
Q ss_pred cccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002821 504 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 556 (876)
Q Consensus 504 ~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 556 (876)
++. ..+|+||||+||+++++.|||+|++.|.+++||+|+|++|+...
T Consensus 212 ~~~------~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 212 VGR------DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp CCC------SSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred hcC------CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 853 23699999999999999999999999999999999999998643
No 4
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1.3e-34 Score=327.62 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHH-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEee
Q 002821 275 AADVAKSQFLATVSHEIRTPMNGVL-GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 353 (876)
Q Consensus 275 ~a~~aks~fla~iSHElRTPL~~I~-g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~ 353 (876)
+.++++++|+++++||+||||++|. |+.+++.....++..+++++.+..+..+|..|++++|++++++.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 4456788999999999999999999 776666544446677899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhHhhhc---CCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC---------eEEEEEE
Q 002821 354 NLRAILDDVLSLFSGKSQDK---GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---------HIFVTVY 421 (876)
Q Consensus 354 ~L~~ll~~v~~~~~~~a~~k---~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G---------~I~v~v~ 421 (876)
++.+++++++..+...+..+ .+.+.+..+. +..+.+|+.+|.|||.|||+||+||+..| .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccC--CCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999999988 3334444433 34578999999999999999999999765 5777664
Q ss_pred EeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcc
Q 002821 422 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 501 (876)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~ 501 (876)
.. ...+.|+|+|+|+|||++.+++||+
T Consensus 274 ~~-----------------------------------------------------~~~v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 274 NN-----------------------------------------------------DVDLIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp EC-----------------------------------------------------SSEEEEEEECCSCCCCTTTTTTTTS
T ss_pred eC-----------------------------------------------------CCEEEEEEEEeCCCcCHHHHHHhcC
Confidence 21 1257899999999999999999999
Q ss_pred cccccCCCC--------------------CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002821 502 PFMQVGPSI--------------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 556 (876)
Q Consensus 502 pF~q~~~s~--------------------~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 556 (876)
|||+.+.+. ++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|....
T Consensus 301 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 301 YHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp TTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred cccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 999987643 2334799999999999999999999999999999999999998643
No 5
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.6e-34 Score=327.52 Aligned_cols=219 Identities=18% Similarity=0.236 Sum_probs=175.2
Q ss_pred HHHHHhHhhhhh-----HHHHHHHHHHHHhCCCCCHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CCceeE
Q 002821 282 QFLATVSHEIRT-----PMNGVLGMLDMLMDTELDVTQ----QDYVR--TAQASGKALVSLINEVLDQAKVES-GKLELE 349 (876)
Q Consensus 282 ~fla~iSHElRT-----PL~~I~g~~~lL~~~~l~~~~----~~~l~--~i~~~~~~L~~lindlLd~skie~-g~~~l~ 349 (876)
+|+++++||||| ||+.|.|+++++.....+... ++|++ .+.+.+.+| +|+++|++++.++ +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 589999999999 888889999998765444332 34777 478888898 9999999999988 677777
Q ss_pred e----EeecHHHHHHHHHHHHHhHhhh-----cCCEEEEEe--CCCCCceEeecHHHHHHHHHHHHHHHhhccCCCe---
Q 002821 350 A----VSFNLRAILDDVLSLFSGKSQD-----KGVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH--- 415 (876)
Q Consensus 350 ~----~~~~L~~ll~~v~~~~~~~a~~-----k~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~--- 415 (876)
. .++++.++++++++.+...+.. +++.+.+.. .+..+..+.+|+.+|+|||.|||+||+||++.|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 7 8999999999999999999987 999988754 1233457899999999999999999999997664
Q ss_pred -----EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCC
Q 002821 416 -----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 490 (876)
Q Consensus 416 -----I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 490 (876)
|.|.+... ...+.|+|+|+|+|
T Consensus 255 ~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~G 281 (394)
T 2btz_A 255 LILPPIKVMVALG-----------------------------------------------------EEDLSIKMSDRGGG 281 (394)
T ss_dssp SCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSCC
T ss_pred CCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCCC
Confidence 77776421 12478999999999
Q ss_pred CChhhHhhhcccccccCCC-----CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 491 IPLEAQSRIFTPFMQVGPS-----ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 491 I~~e~~~~iF~pF~q~~~s-----~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 282 I~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 282 VPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp CCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred CCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999998875 4556789999999999999999999999999999999999999854
No 6
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=3.9e-34 Score=324.22 Aligned_cols=219 Identities=16% Similarity=0.218 Sum_probs=185.9
Q ss_pred HHHHHHhHhhhhh-----HHHHHHHHHHHHhCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHhcCCcee
Q 002821 281 SQFLATVSHEIRT-----PMNGVLGMLDMLMDTE----LDVTQQDYVR--TAQASGKALVSLINEVLD-QAKVESGKLEL 348 (876)
Q Consensus 281 s~fla~iSHElRT-----PL~~I~g~~~lL~~~~----l~~~~~~~l~--~i~~~~~~L~~lindlLd-~skie~g~~~l 348 (876)
.+|+++++||||| ||+.|.|+++++.... ..+..+++++ .+.+.+.+| +|+++|+ +++. ++...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3578889999999 8888899999776543 2344577888 688899999 9999999 6776 777777
Q ss_pred Ee----EeecHHHHHHHHHHHHHhHhhhc-----CCEEEEEe--CCCCCceEeecHHHHHHHHHHHHHHHhhccCCCe--
Q 002821 349 EA----VSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-- 415 (876)
Q Consensus 349 ~~----~~~~L~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~-- 415 (876)
.. .++++.++++++++.+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+..|+
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66 78999999999999999999998 99988754 2233457899999999999999999999997654
Q ss_pred ------EEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCC
Q 002821 416 ------IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 489 (876)
Q Consensus 416 ------I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 489 (876)
|.|.+... ...+.|+|+|+|+
T Consensus 253 ~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~ 279 (394)
T 2e0a_A 253 QPSLTPIEVIVVLG-----------------------------------------------------KEDLTIKISDRGG 279 (394)
T ss_dssp SSSCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSC
T ss_pred cCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCC
Confidence 77776421 1257899999999
Q ss_pred CCChhhHhhhcccccccCCC------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 490 GIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 490 GI~~e~~~~iF~pF~q~~~s------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
|||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 280 GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 280 GVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp CCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 99999999999999998875 5556789999999999999999999999999999999999999753
No 7
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-35 Score=306.95 Aligned_cols=215 Identities=18% Similarity=0.280 Sum_probs=134.7
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHH
Q 002821 280 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 358 (876)
Q Consensus 280 ks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~l 358 (876)
+.+|++.+||||||||++|.++++++.....+ +..+++++.+..+++++..++++++++++++.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 46899999999999999999999988655433 33467788899999999999999999999999998888899999999
Q ss_pred HHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCC-eEEEEEEEeeccccchhhhhhhc
Q 002821 359 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELS 437 (876)
Q Consensus 359 l~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~~~~~~~~~ 437 (876)
+++++..+...+..+++.+.+.+++.. ..+.+|+.+|.|||.||++||+||++.| .|.|.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--A------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--S-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc-eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc--c-------------
Confidence 999999999999999999999987663 4688999999999999999999999665 4554431 0
Q ss_pred cccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcc
Q 002821 438 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 517 (876)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~Gt 517 (876)
+ .|.|+|+|+||+++.++++|+||++.+. ...+|+
T Consensus 146 --------------------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~ 180 (222)
T 3jz3_A 146 --------------------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGS 180 (222)
T ss_dssp --------------------------------------S----EEEEECSCC----------------------------
T ss_pred --------------------------------------C----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcc
Confidence 0 1889999999999999999999998542 344699
Q ss_pred cccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 518 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 518 GLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
||||+|||++++.|||+|+++|.+++||+|+|++|...
T Consensus 181 GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 181 GLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp -CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC-
T ss_pred cccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCC
Confidence 99999999999999999999999999999999999754
No 8
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=1.3e-33 Score=321.24 Aligned_cols=218 Identities=18% Similarity=0.208 Sum_probs=179.9
Q ss_pred HHHHhHhhhhh-----HHHHHHHHHHHHhCCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc----C---
Q 002821 283 FLATVSHEIRT-----PMNGVLGMLDMLMDTELD----VTQQDYVRT--AQASGKALVSLINEVLDQAKVES----G--- 344 (876)
Q Consensus 283 fla~iSHElRT-----PL~~I~g~~~lL~~~~l~----~~~~~~l~~--i~~~~~~L~~lindlLd~skie~----g--- 344 (876)
++++++||||| ||+.|.|+++++.....+ +..+++++. +.+.+.+| +|+++|++++.+. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 44455599999 999999999987754433 233677887 77778888 9999999999976 3
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhHhhhc-----CCEEEEEe--CCCCCceEeecHHHHHHHHHHHHHHHhhccCCC---
Q 002821 345 KLELEAVSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG--- 414 (876)
Q Consensus 345 ~~~l~~~~~~L~~ll~~v~~~~~~~a~~k-----~i~l~~~~--~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G--- 414 (876)
.+.+...++++.+++++++..+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+..|
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 265 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHAN 265 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56677889999999999999999999988 99998876 123345789999999999999999999999765
Q ss_pred -----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCC
Q 002821 415 -----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 489 (876)
Q Consensus 415 -----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~ 489 (876)
.|.|.+... ...+.|+|+|+|+
T Consensus 266 ~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~ 292 (407)
T 2q8g_A 266 RGVYPPIQVHVTLG-----------------------------------------------------NEDLTVKMSDRGG 292 (407)
T ss_dssp TCCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSC
T ss_pred CCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEecCC
Confidence 477776421 1247899999999
Q ss_pred CCChhhHhhhcccccccCCC------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 490 GIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 490 GI~~e~~~~iF~pF~q~~~s------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
|||++.+++||+|||+.+.+ ..+..+|+||||+|||.+++.|||+|++.|.+|.||+|+|++|...
T Consensus 293 GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 293 GVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp CCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 99999999999999998875 3445689999999999999999999999999999999999999753
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=100.00 E-value=7.3e-33 Score=316.19 Aligned_cols=220 Identities=18% Similarity=0.243 Sum_probs=170.2
Q ss_pred HHHHHHHhHhhhhhHHH-----HHHHHHHHHhCCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-cCCce
Q 002821 280 KSQFLATVSHEIRTPMN-----GVLGMLDMLMDTELD----VTQQDYVRTAQAS--GKALVSLINEVLDQAKVE-SGKLE 347 (876)
Q Consensus 280 ks~fla~iSHElRTPL~-----~I~g~~~lL~~~~l~----~~~~~~l~~i~~~--~~~L~~lindlLd~skie-~g~~~ 347 (876)
+.+|. +++|||||||+ .|.|+++++.....+ ++.+++++.+..+ +.+| +|+++|.+.+.. .+...
T Consensus 118 ~~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 34565 56699999999 789999987653222 3346677776655 7777 999998776543 33332
Q ss_pred e----EeEeecHHHHHHHHHHHHHhHhhh-----cCCEEEEEeC--CCCCceEeecHHHHHHHHHHHHHHHhhccCCC--
Q 002821 348 L----EAVSFNLRAILDDVLSLFSGKSQD-----KGVELAVYIS--DRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-- 414 (876)
Q Consensus 348 l----~~~~~~L~~ll~~v~~~~~~~a~~-----k~i~l~~~~~--~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G-- 414 (876)
. ...++++.++++++++.+...+.. +++.+.+... +..+..+.+|+.+|+|||.|||+||+||+.+|
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 347899999999999999998877 8888876442 23345789999999999999999999999765
Q ss_pred -------eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEee
Q 002821 415 -------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 487 (876)
Q Consensus 415 -------~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 487 (876)
.|.|.+... ...+.|+|+|+
T Consensus 275 ~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~I~V~D~ 301 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLG-----------------------------------------------------KEDLSIKISDL 301 (419)
T ss_dssp TCSSCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEEC
Confidence 477766321 12578999999
Q ss_pred CCCCChhhHhhhcccccccCCC------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 488 GQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 488 G~GI~~e~~~~iF~pF~q~~~s------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
|+|||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|+++|.+|.||+|+|++|...
T Consensus 302 G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 302 GGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp SCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred CCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 9999999999999999998775 4556789999999999999999999999999999999999999854
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-32 Score=301.59 Aligned_cols=214 Identities=28% Similarity=0.408 Sum_probs=181.2
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 002821 278 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 356 (876)
Q Consensus 278 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~ 356 (876)
.++.+|++.++|||||||++|.++++++.+... ++..+++++.+..++++|..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 356789999999999999999999999876533 3345789999999999999999999999993 345677889999
Q ss_pred HHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcc-CCCeEEEEEEEeeccccchhhhhh
Q 002821 357 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE 435 (876)
Q Consensus 357 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-~~G~I~v~v~~~~~~~~~~~~~~~ 435 (876)
+++++++..+...+..+++.+.+.+++.. ..+.+|+.+|.||+.||++||+||+ +.|.|.|++...+
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~----------- 274 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMY----------- 274 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEET-----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecC-----------
Confidence 99999999999999999999998887653 4688999999999999999999999 4677877764321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCC
Q 002821 436 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 515 (876)
..+.|+|+|+|+|||++.+++||+||++.+ .+
T Consensus 275 ------------------------------------------~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~ 306 (349)
T 3a0r_A 275 ------------------------------------------TKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQ 306 (349)
T ss_dssp ------------------------------------------TEEEEEEEEESCCCCGGGGTTTSSSCCCC---------
T ss_pred ------------------------------------------CEEEEEEEECCCCCChHHHhhcCCCCccCC------CC
Confidence 247899999999999999999999999743 36
Q ss_pred cccccHHHHHHHHH-HcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 516 GTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 516 GtGLGLsI~k~lv~-~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
|+||||+|||++++ .|||.|+++|.++ ||+|+|++|+..
T Consensus 307 g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 307 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp ---CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESCT
T ss_pred CccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecCCC
Confidence 99999999999999 8999999999865 999999999854
No 11
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00 E-value=2.6e-32 Score=287.09 Aligned_cols=214 Identities=23% Similarity=0.391 Sum_probs=183.0
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHH
Q 002821 278 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 356 (876)
Q Consensus 278 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~-~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~ 356 (876)
+++.+|++.++|||||||++|.+++++|.+...+ +..+++++.+..+++++..++++++++++.+.+ ...++++.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~ 87 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVK 87 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHH
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHH
Confidence 4567899999999999999999999999876554 456789999999999999999999999987665 35679999
Q ss_pred HHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC-CCeEEEEEEEeeccccchhhhhh
Q 002821 357 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETE 435 (876)
Q Consensus 357 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~~~~~~~ 435 (876)
.++++++..+...+..+++.+.+.+++ ..+.+|+.+|.|||.||+.||+||++ .|.|.|.+...+
T Consensus 88 ~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~----------- 153 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDN----------- 153 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEET-----------
T ss_pred HHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeC-----------
Confidence 999999999999999999999887654 46889999999999999999999995 566777664321
Q ss_pred hccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCC
Q 002821 436 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 515 (876)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~ 515 (876)
..+.|+|+|+|+||+++..+++|+||++.+ ..+
T Consensus 154 ------------------------------------------~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~~ 186 (244)
T 3d36_A 154 ------------------------------------------GRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GVK 186 (244)
T ss_dssp ------------------------------------------TEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GGG
T ss_pred ------------------------------------------CEEEEEEEecCCCCCHHHHHHHhcccccCC-----CCC
Confidence 247899999999999999999999999743 246
Q ss_pred cccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002821 516 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 556 (876)
Q Consensus 516 GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 556 (876)
|+||||+||+++++.|||+|+++|.+++|++|+|++|+...
T Consensus 187 g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 187 GTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp CCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 89999999999999999999999999999999999998654
No 12
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.98 E-value=2.1e-31 Score=282.41 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=152.9
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHHHHHHH
Q 002821 283 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 362 (876)
Q Consensus 283 fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ll~~v 362 (876)
+.++|||||||||++|.|++++|.+...++..+++++.|.++++++.. +++++++..+.. ....++++.++..
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~----ll~~~r~~~~~~-~~~~~~~~~~l~~-- 121 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLAD----LLQFTRVAFGAS-ASAENFDSRELEK-- 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHH----HHHHHHHHTTCC-SSCCCEEHHHHHH--
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH----HHHHHHHhhccc-cccccccHHHHHH--
Confidence 667899999999999999999998877777788889999888877654 456777655542 3345677766543
Q ss_pred HHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEEeeccccchhhhhhhccccC
Q 002821 363 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKN 441 (876)
Q Consensus 363 ~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~~~~~~~~~~~~ 441 (876)
.+...+..+++++...+++.. ++..+.|++.||++||+||++. |.|.|++...+
T Consensus 122 --~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~----------------- 176 (247)
T 4fpp_A 122 --LAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAAD----------------- 176 (247)
T ss_dssp --HHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEET-----------------
T ss_pred --HHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEEC-----------------
Confidence 344556778888876554321 3578899999999999999976 46766664321
Q ss_pred cCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCC--CChhhHhhhcccccccCCCCCCCCCcccc
Q 002821 442 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG--IPLEAQSRIFTPFMQVGPSISRTHGGTGI 519 (876)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~~~~iF~pF~q~~~s~~~~~~GtGL 519 (876)
..+.|+|+|+|+| |+++..+++|++|++. ..+|+||
T Consensus 177 ------------------------------------~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~~~G~GL 214 (247)
T 4fpp_A 177 ------------------------------------GRFSIIADAKGPRARLRPEVLAGLKGEPLAE------GLGGPWV 214 (247)
T ss_dssp ------------------------------------TEEEEEEEEESTTCCCCHHHHHHHTTCCCCS------SCHHHHH
T ss_pred ------------------------------------CEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------CCCCccH
Confidence 2467888888877 7799999999999753 3469999
Q ss_pred cHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEE
Q 002821 520 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 552 (876)
Q Consensus 520 GLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp 552 (876)
||+|||+||+.|||+|+++|.+| |++|+|+||
T Consensus 215 GLai~~~iv~~hGG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 215 QAAYLNALVRAAGGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEcCC-EEEEEEEec
Confidence 99999999999999999999876 999999998
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.95 E-value=8e-28 Score=270.59 Aligned_cols=202 Identities=16% Similarity=0.225 Sum_probs=159.4
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeecHHH
Q 002821 278 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 357 (876)
Q Consensus 278 ~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~L~~ 357 (876)
.+|.+|+.+++||||||++.+.++++.+.. +.+..++++|..+++++++++.- ...+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~~--------~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVMK--------IRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHHH--------HHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHH--------cceecHHH
Confidence 468899999999999999999887765532 56778889999999999998732 13467789
Q ss_pred HHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHH---HHHHHHHHHHHHHhhcc-------------CCCeEEEEEE
Q 002821 358 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG---RFRQIITNLMGNSIKFT-------------EKGHIFVTVY 421 (876)
Q Consensus 358 ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~---rl~qIl~NLl~NAiKfT-------------~~G~I~v~v~ 421 (876)
+++.+...++..+..++.++.+.++... +..|+. ++.|+|.||+.||+||+ +.|.|.|+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~ 145 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR 145 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE
Confidence 9999999999998887877777765442 345775 55566999999999996 5677877764
Q ss_pred EeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhH-----
Q 002821 422 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ----- 496 (876)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~----- 496 (876)
... ..+.|+|+|+|+||+++.+
T Consensus 146 ~~~-----------------------------------------------------~~v~i~V~D~G~Gi~~~~~~~~a~ 172 (379)
T 1b3q_A 146 HEG-----------------------------------------------------NNVVIEVEDDGRGIDKEKIIRKAI 172 (379)
T ss_dssp EET-----------------------------------------------------TEEEEEEEECSCCCCHHHHHHHHH
T ss_pred EeC-----------------------------------------------------CEEEEEEEECCCCCCHHHHHHHHH
Confidence 321 2578999999999999987
Q ss_pred -------------------hhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 497 -------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 497 -------------------~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
++||+|||+.... .+..+|+||||+|||++++.|||+|+++|.+|+||+|++++|+..
T Consensus 173 ~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 173 EKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp HSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred HcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 8999999886544 234579999999999999999999999999999999999999864
No 14
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.94 E-value=4.7e-26 Score=217.10 Aligned_cols=121 Identities=31% Similarity=0.482 Sum_probs=111.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+.||||||||+.+|.+++.+|++.||. |.+|.||.+|++++. .+.||+||+|++||+|||+|++++||+.+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-~~~~DlillD~~MP~mdG~el~~~ir~~~------- 83 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-KGDFDFVVTDWNMPGMQGIDLLKNIRADE------- 83 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHST-------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhCC-------
Confidence 358999999999999999999999996 778999999999985 46899999999999999999999999743
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++||....+...+|+++|++|||+|||+.++|..+|.+++.+
T Consensus 84 -------------~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 84 -------------ELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp -------------TTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred -------------CCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 24579999999999999999999999999999999999999999998764
No 15
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.92 E-value=2.3e-24 Score=222.87 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeEeEeec
Q 002821 277 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 354 (876)
Q Consensus 277 ~~aks~fla~iSHElRTPL~~I~g~~~lL~~~--~l~~~~~~~l~~i~~~~~~L~~lindlLd~skie~g~~~l~~~~~~ 354 (876)
...+.++...+.|++++||++|.+.++++... ..++...+.+..+.....++...+.+++... .+.+
T Consensus 25 ~~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~ 93 (218)
T 3ehh_A 25 LEERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIR 93 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcC
Confidence 34567889999999999999999999987542 2233456677777777777777777665322 2467
Q ss_pred HHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhh
Q 002821 355 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 434 (876)
Q Consensus 355 L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~ 434 (876)
+.+.++.+...+ ..+++.+.+.++...+.....++..+.+|+.||++||+||++.|.|.|.+...+
T Consensus 94 l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~---------- 159 (218)
T 3ehh_A 94 LKDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW---------- 159 (218)
T ss_dssp HHHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET----------
T ss_pred HHHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeC----------
Confidence 888877776655 467888888776554444467889999999999999999998888887765321
Q ss_pred hhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCC
Q 002821 435 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 514 (876)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~ 514 (876)
..+.|+|+|+|+|||++..
T Consensus 160 -------------------------------------------~~~~i~V~D~G~Gi~~~~~------------------ 178 (218)
T 3ehh_A 160 -------------------------------------------KEVVITVSDDGTFKGEENS------------------ 178 (218)
T ss_dssp -------------------------------------------TEEEEEEEESSCCCC----------------------
T ss_pred -------------------------------------------CEEEEEEEECCcCCCCCCC------------------
Confidence 2478999999999999865
Q ss_pred CcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 515 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 515 ~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
+|+||||+||+.+++.|||+|++.|.+ ||+|+|++|+.
T Consensus 179 ~g~GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 179 FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp ----CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEecC
Confidence 589999999999999999999999999 99999999974
No 16
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.92 E-value=2.6e-24 Score=209.33 Aligned_cols=145 Identities=23% Similarity=0.379 Sum_probs=127.7
Q ss_pred EeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccch
Q 002821 351 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 430 (876)
Q Consensus 351 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~ 430 (876)
++++|.+++++++..+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||++. .|.|++...+
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~------ 72 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTD------ 72 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECS------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecC------
Confidence 47899999999999999999999999999887654 48899999999999999999999976 6666553211
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC
Q 002821 431 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 510 (876)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~ 510 (876)
..+.|+|+|+|+||+++.++++|+||++.+.+
T Consensus 73 -----------------------------------------------~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~- 104 (152)
T 1id0_A 73 -----------------------------------------------EHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL- 104 (152)
T ss_dssp -----------------------------------------------SCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-
T ss_pred -----------------------------------------------CEEEEEEEeCCCCcCHHHHHHHhccceeccCC-
Confidence 24789999999999999999999999986543
Q ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 511 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 511 ~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
.+|+||||+||+++++.|||+|.++|.++.|++|+|++|+..
T Consensus 105 ---~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 105 ---RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp ---CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred ---CCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 369999999999999999999999999999999999999854
No 17
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.92 E-value=2.3e-24 Score=209.43 Aligned_cols=146 Identities=16% Similarity=0.303 Sum_probs=116.6
Q ss_pred EeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeecccc
Q 002821 349 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 428 (876)
Q Consensus 349 ~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~ 428 (876)
+..++||.+++++++..+...+. ++.+.+..+ .+..+.+|+.+|.||+.||++||+||++.|.|.|++...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~---- 75 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR---- 75 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEET----
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC----
Confidence 45689999999999999877654 556655543 3457889999999999999999999999897777664321
Q ss_pred chhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCC
Q 002821 429 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 508 (876)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~ 508 (876)
..+.|+|.|+|+||+++.++++|+||++.+.
T Consensus 76 -------------------------------------------------~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~ 106 (150)
T 1ysr_A 76 -------------------------------------------------AGVEIAIDDNGSGVPEGERQVVFERFSRGST 106 (150)
T ss_dssp -------------------------------------------------TEEEEEEEESSSCCCGGGHHHHHTSCC----
T ss_pred -------------------------------------------------CEEEEEEEECCCCCCHHHHHHHhcccccCCC
Confidence 1478999999999999999999999998643
Q ss_pred CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 509 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 509 s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
+ ..+|+||||+||+++++.|||+|++.|.+++|++|++++|+.
T Consensus 107 ~---~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 107 A---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp ----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred C---CCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 2 357999999999999999999999999999999999999973
No 18
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.91 E-value=2.3e-23 Score=202.27 Aligned_cols=146 Identities=30% Similarity=0.466 Sum_probs=126.1
Q ss_pred EeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcc-CCCeEEEEEEEeeccc
Q 002821 349 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVV 427 (876)
Q Consensus 349 ~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-~~G~I~v~v~~~~~~~ 427 (876)
+..+++|.+++++++..+...+..+++++.+.+++. +..+.+|+..|.||+.||++||+||+ +.|.|.|++...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~---- 76 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM---- 76 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC----
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec----
Confidence 457899999999999999999999999999988754 44688999999999999999999999 457777766421
Q ss_pred cchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccC
Q 002821 428 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 507 (876)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~ 507 (876)
...+.|+|+|+|+||+++.++++|+||++.+
T Consensus 77 -------------------------------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 77 -------------------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp -------------------------------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred -------------------------------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 1247899999999999999999999998642
Q ss_pred CCCCCCCCcccccHHHHHHHHH-HcCCEEEEEEeCCCcEEEEEEEEeCC
Q 002821 508 PSISRTHGGTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 555 (876)
Q Consensus 508 ~s~~~~~~GtGLGLsI~k~lv~-~mgG~I~v~S~~g~GstF~~~lp~~~ 555 (876)
.+|+||||+||+++++ .|||++.+++.++ |++|+|++|...
T Consensus 108 ------~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP~~~ 149 (152)
T 3a0y_A 108 ------TQGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 149 (152)
T ss_dssp --------CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEESCC
T ss_pred ------CCCCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeCCCC
Confidence 3689999999999999 9999999999865 999999999753
No 19
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.91 E-value=8.7e-24 Score=211.60 Aligned_cols=153 Identities=28% Similarity=0.474 Sum_probs=126.4
Q ss_pred eecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCC-CeEEEEEEEeeccccch
Q 002821 352 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSI 430 (876)
Q Consensus 352 ~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~~ 430 (876)
+++|.++++++++.+... ..+++.+.+.+++. +..+.+|+.+|.+||.|||+||+||+.. |.|.|.+....
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~------ 73 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNE------ 73 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEET------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEcc------
Confidence 689999999999999988 88999999888654 3468899999999999999999999954 67777664321
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC
Q 002821 431 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 510 (876)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~ 510 (876)
+...+.|+|+|+|+||+++.++++|+||++.+.+.
T Consensus 74 ---------------------------------------------~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~ 108 (177)
T 3sl2_A 74 ---------------------------------------------EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKAR 108 (177)
T ss_dssp ---------------------------------------------TTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC---
T ss_pred ---------------------------------------------CCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCC
Confidence 11247899999999999999999999999987776
Q ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCCC
Q 002821 511 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 557 (876)
Q Consensus 511 ~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~ 557 (876)
+...+|+||||+||+++++.|||+|.+.|.++.|++|+|++|+....
T Consensus 109 ~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~~ 155 (177)
T 3sl2_A 109 TRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQ 155 (177)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC--
T ss_pred CCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCCc
Confidence 66778999999999999999999999999999999999999997543
No 20
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.91 E-value=4.7e-24 Score=219.33 Aligned_cols=123 Identities=37% Similarity=0.584 Sum_probs=107.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC-EEEEEcCHHHHHHHhCCC------------CCccEEEEeCCCCCCCHHHHHHH
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPP------------HQFDACFMDIQMPEMDGFEATKI 795 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eA~~~~~~~------------~~~DlilmDi~MP~mdG~e~~~~ 795 (876)
+.+||||||++.++..+..+|++.|+ .|..+.++.+|++.+... ..||+||+|++||+|||++++++
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 56999999999999999999999998 999999999999988531 37999999999999999999999
Q ss_pred HHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC-CHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 796 IREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV-IQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 796 IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~-~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
||+.+.. ..+++|||++|+.. ..+...+|+++|+++||.||++ +|..+|++++...
T Consensus 141 lr~~~~~------------------~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 141 IRKVEKS------------------YGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHT------------------TTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHhhhhh------------------cCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 9985321 13579999999998 7788999999999999999999 9999999987653
No 21
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.91 E-value=1.3e-23 Score=206.84 Aligned_cols=149 Identities=23% Similarity=0.322 Sum_probs=124.5
Q ss_pred eeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeecc
Q 002821 347 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 426 (876)
Q Consensus 347 ~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~ 426 (876)
++...+++|.+++++++..+.. ++..+.+.+.+. +..+.+|+.+|.||+.||++||+||+ .|.|.|.+...+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~-- 75 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEP-- 75 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEET--
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcC--
Confidence 4556789999999999998653 344555554333 34688999999999999999999999 888888775321
Q ss_pred ccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccccccc
Q 002821 427 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 506 (876)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~ 506 (876)
..+.|.|+|+|+||+++.++++|+||++.
T Consensus 76 ---------------------------------------------------~~~~i~i~D~G~gi~~~~~~~~f~~f~~~ 104 (161)
T 1bxd_A 76 ---------------------------------------------------NRAWFQVEDDGPGIAPEQRKHLFQPFVRG 104 (161)
T ss_dssp ---------------------------------------------------TEEEEEEEEESSCSCTTGGGCSSCCCCCC
T ss_pred ---------------------------------------------------CEEEEEEEeCCCCCCHHHHHHhCCCceeC
Confidence 14789999999999999999999999997
Q ss_pred CCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeCCC
Q 002821 507 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 556 (876)
Q Consensus 507 ~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~~~ 556 (876)
+.+ +..+|+||||+||+++++.|||+|+++|.++.|++|++++|+...
T Consensus 105 ~~~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 105 DSA--RTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp SCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CCC--CCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 654 334799999999999999999999999999999999999998654
No 22
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.90 E-value=2.6e-23 Score=203.66 Aligned_cols=156 Identities=26% Similarity=0.425 Sum_probs=111.2
Q ss_pred eeEeEeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccC--CCeEEEEEEEee
Q 002821 347 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE--KGHIFVTVYLVE 424 (876)
Q Consensus 347 ~l~~~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~--~G~I~v~v~~~~ 424 (876)
.++..+++|.+++++++..+... ..+++++.+.+++..+. +.+|+.+|.||+.||++||+||+. .|.|.|++....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 45678899999999999999987 88899999988776654 789999999999999999999997 677777765432
Q ss_pred ccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhccccc
Q 002821 425 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 504 (876)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~ 504 (876)
.... ....+...+.|+|+|+|+||+++.++++|+||+
T Consensus 80 ~~~~-------------------------------------------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~ 116 (160)
T 1r62_A 80 QLTL-------------------------------------------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV 116 (160)
T ss_dssp EEEE-------------------------------------------TTEEEEEEEEEEEEEECTTC-------------
T ss_pred cccc-------------------------------------------cccccccEEEEEEEeCCCCCCHHHHHHhhCccc
Confidence 2000 001122357899999999999999999999999
Q ss_pred ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 505 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 505 q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
+.+ .+|+||||+||+++++.|||+|+++|.+++ |+|+|++|+.
T Consensus 117 ~~~------~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 117 SGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp -------------CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred cCC------CCCCccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 743 368999999999999999999999999987 9999999974
No 23
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.90 E-value=5.4e-22 Score=210.84 Aligned_cols=239 Identities=21% Similarity=0.284 Sum_probs=175.6
Q ss_pred cccCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcC
Q 002821 577 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 656 (876)
Q Consensus 577 ~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 656 (876)
..++|.+++++++++..+......|+.||+++..+.+. ....++++++|........
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~-------------- 63 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQ-------------- 63 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCC--------------
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCccccc--------------
Confidence 45789999999999999999999999999999887641 2345778888865432211
Q ss_pred CCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhccCCCCeEEEE
Q 002821 657 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIV 735 (876)
Q Consensus 657 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ILvV 735 (876)
....+.+...... . .........+.+|.....+...+.+...............+. ........+.+||||
T Consensus 64 ---~~~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILiv 135 (254)
T 2ayx_A 64 ---GRAVVTFCRRHIG-I----PLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVV 135 (254)
T ss_dssp ---SSEEEEECSSCCC-S----CCTTSTTEEEECSSCCSHHHHHHHHHHTCCCSCCCCCCSCCCSCCCCCCCCCCEEEEE
T ss_pred ---cceEEEEecccCC-C----cccccCCceeccccchHHHHHHHHHHhhhccccccccccCCCccccccCCCCCEEEEE
Confidence 0112222211100 0 001122346678888777777777655322111000000000 001112345789999
Q ss_pred eCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchh
Q 002821 736 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 815 (876)
Q Consensus 736 dDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 815 (876)
|||+.++..+..+|++.||.|..+.+|.+|++.+. .+.||+||||++||+|||++++++||+..
T Consensus 136 dd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~dlvl~D~~mp~~~G~~l~~~ir~~~--------------- 199 (254)
T 2ayx_A 136 DDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLSDVNMPNMDGYRLTQRIRQLG--------------- 199 (254)
T ss_dssp ESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-HSCCSEEEEEESSCSSCCHHHHHHHHHHH---------------
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhcC---------------
Confidence 99999999999999999999999999999999985 46799999999999999999999999742
Q ss_pred hhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 816 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 816 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
+++|||++|++...+...+|+++||++|+.||++.++|...|.+++.
T Consensus 200 -------~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 200 -------LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp -------CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred -------CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999998763
No 24
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.90 E-value=1.4e-22 Score=216.01 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=173.1
Q ss_pred cEEEEECCchhhHHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.++|+||+++..+......|.. .|+.+...+... ++..+ ....++++++|..+...++. .++..++.. .
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~~~-~~~~~--~~~~~dlvllD~~mP~~~G~---~~~~~lr~~----~ 74 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLE-GARHC--QGDEYVVALVDLTLPDAPSG---EAVKVLLER----G 74 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEESSTG-GGTTC--CTTTEEEEEEESCBTTBTTS---HHHHHHHHT----T
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeChHH-HHHHh--hcCCCcEEEEeCCCCCCCHH---HHHHHHHhC----C
Confidence 5799999999888877777755 688887665543 33322 23468899999877665443 234445442 2
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHH--HHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS--LQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 738 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn 738 (876)
.++++++........... -..|...++.||...+..... +.+.. .....+||||||+
T Consensus 75 ~pvi~lt~~~~~~~~~~a-~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~--------------------~~~~~~ILivDD~ 133 (259)
T 3luf_A 75 LPVVILTADISEDKREAW-LEAGVLDYVMKDSRHSLQYAVGLVHRLY--------------------LNQQIEVLVVDDS 133 (259)
T ss_dssp CCEEEEECC-CHHHHHHH-HHTTCCEEEECSSHHHHHHHHHHHHHHH--------------------HHTTCEEEEECSC
T ss_pred CCEEEEEccCCHHHHHHH-HHCCCcEEEeCCchhHHHHHHHhhhhHh--------------------hcCCCcEEEEeCC
Confidence 334444333222111111 122566899999865532221 11111 0124589999999
Q ss_pred HHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhc
Q 002821 739 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 818 (876)
Q Consensus 739 ~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~ 818 (876)
+.++..+...|+..|+.|..+.+|.+|++.+.....||+||+|++||+|||++++++||+..+
T Consensus 134 ~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~----------------- 196 (259)
T 3luf_A 134 RTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYS----------------- 196 (259)
T ss_dssp HHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccC-----------------
Confidence 999999999999999999999999999998854335899999999999999999999997421
Q ss_pred cCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 819 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 819 ~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..++|||++|+....+...+|+++|++|||.||++.++|..+|++.+.
T Consensus 197 ---~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 197 ---KQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp ---TTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987653
No 25
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.88 E-value=7.4e-23 Score=207.07 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=122.3
Q ss_pred EeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhcc-------------CCCeEE
Q 002821 351 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-------------EKGHIF 417 (876)
Q Consensus 351 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT-------------~~G~I~ 417 (876)
.+++|.++++++...+...+..+++.+.+.++.........+..++.|||.||++||+||+ +.|.|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 4689999999999999999999999888887655332223445667777999999999995 456777
Q ss_pred EEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhH-
Q 002821 418 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ- 496 (876)
Q Consensus 418 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~- 496 (876)
|.+...+ ..+.|+|+|+|+||+++.+
T Consensus 83 I~~~~~~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 83 LSARHEG-----------------------------------------------------NNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp EEEEEET-----------------------------------------------------TEEEEEEEECSSCCCHHHHH
T ss_pred EEEEecC-----------------------------------------------------CEEEEEEEeCCCCcCHHHHh
Confidence 7664321 2478999999999999986
Q ss_pred -----------------------hhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEe
Q 002821 497 -----------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 553 (876)
Q Consensus 497 -----------------------~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~ 553 (876)
+++|+||++.... .+..+|+||||+||+++++.|||+|++.|.++.||+|++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 110 RKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhhhhccchhhhhhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999986432 2234689999999999999999999999999999999999997
No 26
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.87 E-value=1.6e-23 Score=196.24 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=102.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
..|||||||++.++..++.+|++.||+|+ +|.||.+|++++. .++||+||+|++||+|||++++++||+.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~-~~~~DlvllDi~mP~~~G~el~~~lr~~-------- 78 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR-KGQFDIAIIDVNLDGEPSYPVADILAER-------- 78 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH-HCCSSEEEECSSSSSCCSHHHHHHHHHT--------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHcC--------
Confidence 35899999999999999999999999986 7999999999985 5789999999999999999999999962
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
++|||++||+.+.+. +.++|+++||.|||+.++|..+|++..+.
T Consensus 79 ----------------~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 79 ----------------NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp ----------------CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred ----------------CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 589999999876554 34689999999999999999999988653
No 27
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.85 E-value=1.4e-20 Score=175.92 Aligned_cols=119 Identities=32% Similarity=0.444 Sum_probs=110.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||||||++..+..++..|++.||.|..+.+|.+|++.+. .+.||+||+|++||+|||++++++||+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-~~~~dlvllD~~~p~~~g~~~~~~l~~~~--------- 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTPDLIVLXIMMPVMDGFTVLKKLQEKE--------- 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-TBCCSEEEECSCCSSSCHHHHHHHHHTST---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCCCCcHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999985 56899999999999999999999999732
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+.
T Consensus 73 -----------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 73 -----------EWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp -----------TTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred -----------cccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 1357999999999999999999999999999999999999999988754
No 28
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=7e-20 Score=170.50 Aligned_cols=117 Identities=31% Similarity=0.508 Sum_probs=108.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||||||++..+..++..|++.||.|.++.++.+|++.+. .+.||+||+|+.||+|||++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlii~D~~~p~~~g~~~~~~lr~~---------- 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDGVEVCREVRKK---------- 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TTCCSEEEEETTSTTTHHHHHHHHHHTT----------
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999985 4679999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.++|||++|+........+++++|+++|+.||++.++|..+|++.+..
T Consensus 72 -------------~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 72 -------------YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp -------------CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred -------------CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999999887653
No 29
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.83 E-value=5.8e-20 Score=175.19 Aligned_cols=121 Identities=26% Similarity=0.398 Sum_probs=110.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+. .+.||+||+|+.||+|||++++++||+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~lr~~~-------- 74 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-KNLPDALICDVLLPGIDGYTLCKRVRQHP-------- 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHSG--------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHcCC--------
Confidence 358999999999999999999999999999999999999885 46799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 75 ------------~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 75 ------------LTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp ------------GGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ------------CcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 13468999999999999999999999999999999999999999987654
No 30
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.82 E-value=1.2e-19 Score=172.36 Aligned_cols=121 Identities=35% Similarity=0.564 Sum_probs=108.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC-EEEEEcCHHHHHHHhCC----CCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 804 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eA~~~~~~----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 804 (876)
.+||||||++.++..++.+|+..|+ .|..+.+|.+|++.+.. ...||+||+|++||+|||++++++||+..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~---- 78 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL---- 78 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS----
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc----
Confidence 4799999999999999999999997 58899999999998742 15699999999999999999999999621
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+++...
T Consensus 79 -----------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 79 -----------------GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp -----------------CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred -----------------CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 23589999999999999999999999999999999999999999987654
No 31
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.82 E-value=4.8e-21 Score=206.97 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=106.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 806 (876)
+.+|||||||+.++.+++.+|+..||.|. +|.||.+|++.+. .+.||+||||++|| +|||++++++||+.
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-~~~~dlvl~D~~MPd~mdG~e~~~~ir~~------- 231 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-RRTPGLVLADIQLADGSSGIDAVKDILGR------- 231 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HCCCSEEEEESCCTTSCCTTTTTHHHHHH-------
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-hCCCCEEEEcCCCCCCCCHHHHHHHHHhc-------
Confidence 45899999999999999999999999999 9999999999985 46799999999999 89999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
. ++|||++|++. +...+|+++||++||.|||+.++|..+|.+++...
T Consensus 232 ---------------~-~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 232 ---------------M-DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp ---------------T-TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred ---------------C-CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 1 69999999985 45777999999999999999999999999988543
No 32
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.82 E-value=1.1e-19 Score=171.27 Aligned_cols=122 Identities=28% Similarity=0.425 Sum_probs=110.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+.+||||||++..+..++.+|++.|+. +..+.++.+|++.+.....||+||+|++||+|||++++++||+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~------- 77 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS------- 77 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST-------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-------
Confidence 358999999999999999999999995 889999999998875445799999999999999999999999732
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++|+....+...+|+++|+++|+.||++.++|..+|++.+..
T Consensus 78 -------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 78 -------------RFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp -------------TCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred -------------CCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 13578999999999999999999999999999999999999999988765
No 33
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.82 E-value=8.8e-20 Score=172.53 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=101.0
Q ss_pred ecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhh
Q 002821 353 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 432 (876)
Q Consensus 353 ~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~ 432 (876)
++|.+.++.+.. .++.+++++.+.++...+.....++..+.||+.||++||+||++.+.|.|++...+
T Consensus 2 v~l~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~-------- 69 (128)
T 3ehg_A 2 IRLKDELINIKQ----ILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW-------- 69 (128)
T ss_dssp CCHHHHHHHHHH----HHHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET--------
T ss_pred ccHHHHHHHHHH----HHHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeC--------
Confidence 455666655554 44567898888776544444456889999999999999999998888888774321
Q ss_pred hhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCC
Q 002821 433 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 512 (876)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~ 512 (876)
..+.|+|+|+|+||+++.+
T Consensus 70 ---------------------------------------------~~~~i~V~D~G~Gi~~~~~---------------- 88 (128)
T 3ehg_A 70 ---------------------------------------------KEVVITVSDDGTFKGEENS---------------- 88 (128)
T ss_dssp ---------------------------------------------TEEEEEEEESSCCCSCSSC----------------
T ss_pred ---------------------------------------------CEEEEEEEECCcCcCcccC----------------
Confidence 2478999999999998754
Q ss_pred CCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 513 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 513 ~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
+|+||||+||+++++.|||+|+++|.+ ||+|++++|+.
T Consensus 89 --~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 89 --FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp --CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred --CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 589999999999999999999999998 99999999974
No 34
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.81 E-value=2e-19 Score=173.11 Aligned_cols=124 Identities=24% Similarity=0.492 Sum_probs=108.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. .+.||+||+|++||+|||++++++||+....
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~------ 86 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQLRVMQAS------ 86 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHHHHT------
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhc------
Confidence 468999999999999999999999999999999999999885 4679999999999999999999999974321
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
..+++|||++|+....+...+|+++|+++||.||++.++|..+|.++....
T Consensus 87 ------------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 87 ------------GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp ------------TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ------------cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhh
Confidence 134689999999999999999999999999999999999999999987543
No 35
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.80 E-value=3.2e-19 Score=168.39 Aligned_cols=125 Identities=22% Similarity=0.349 Sum_probs=105.0
Q ss_pred EeecHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccch
Q 002821 351 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 430 (876)
Q Consensus 351 ~~~~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~ 430 (876)
..++|.+++++++..+ ..+++.+.+.++...+.....|+..|.||+.||++||+||++.|.|.|++...
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~------- 71 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVD------- 71 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEES-------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEc-------
Confidence 4678999999999877 56788888887766554444569999999999999999999889888876431
Q ss_pred hhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC
Q 002821 431 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 510 (876)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~ 510 (876)
.. +.|+|+|+|+||+++.
T Consensus 72 ----------------------------------------------~~-~~i~v~D~G~gi~~~~--------------- 89 (129)
T 3zxo_A 72 ----------------------------------------------DD-LCIEVTDNGRGMPDEF--------------- 89 (129)
T ss_dssp ----------------------------------------------SE-EEEEEEECCCCCTTTT---------------
T ss_pred ----------------------------------------------CC-EEEEEecCCCCCCccc---------------
Confidence 12 6799999999999764
Q ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEEeCC-CcEEEEEEEEeC
Q 002821 511 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 554 (876)
Q Consensus 511 ~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g-~GstF~~~lp~~ 554 (876)
+||||+|||++++.|||++.+.|.++ +|++|++++|+.
T Consensus 90 ------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 90 ------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp ------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred ------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 69999999999999999999999999 999999999974
No 36
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.80 E-value=2.2e-19 Score=180.70 Aligned_cols=117 Identities=23% Similarity=0.340 Sum_probs=109.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+.+||||||++..+..++.+|+..||.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~--------- 76 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-AEKFEFITVXLHLGNDSGLSLIAPLCDL--------- 76 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-TSCCSEEEECSEETTEESHHHHHHHHHH---------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeccCCCccHHHHHHHHHhc---------
Confidence 468999999999999999999999999999999999999985 5779999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.+
T Consensus 77 -------------~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 77 -------------QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp -------------CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999987654
No 37
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.78 E-value=3.7e-18 Score=159.87 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=109.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..++.+|...|+.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 72 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-DVRNGVLVTDLRMPDMSGVELLRNLGDL--------- 72 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-GCCSEEEEEECCSTTSCHHHHHHHHHHT---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 73 -------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 73 -------------KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp -------------TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999999999999999987654
No 38
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.78 E-value=3.4e-18 Score=166.49 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=110.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+.+||||||++..+..++.+|++.||.|.++.++.+|++.+. ...||+||+|+.||++||+++++.||+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~-------- 77 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-LTRPDLIISDVLMPEMDGYALCRWLKGQP-------- 77 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-TCCCSEEEEESCCSSSCHHHHHHHHHHST--------
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCC--------
Confidence 468999999999999999999999999999999999999995 56799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+++|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 78 ------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 78 ------------DLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp ------------TTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------CcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1357999999999999999999999999999999999999999988764
No 39
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.77 E-value=2.9e-18 Score=159.99 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=109.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-KERPDLVLLDMKIPGMDGIEILKRMKVI---------- 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCTTCCHHHHHHHHHHH----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHHh----------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..++++.+..
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 73 ------------DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ------------CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred ------------CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 2468999999999999999999999999999999999999999998764
No 40
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.77 E-value=2.1e-18 Score=160.61 Aligned_cols=121 Identities=30% Similarity=0.499 Sum_probs=104.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 71 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-ENKPDLILMDIQLPEISGLEVTKWLKEDD--------- 71 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHHHST---------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcCc---------
Confidence 48999999999999999999999999999999999999885 45799999999999999999999999731
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 72 -----------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 72 -----------DLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp -----------TTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred -----------cccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 134789999999999999999999999999999999999999999887543
No 41
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.77 E-value=3.3e-18 Score=160.99 Aligned_cols=121 Identities=30% Similarity=0.416 Sum_probs=104.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+++||||||++..+..++.+|+..|+.+.++.++.+|++.+. .+.||+||+|+.||+++|++++++||+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGLKLLEHIRNR-------- 76 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-TCCCSEEEECCC-----CHHHHHHHHHT--------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhc--------
Confidence 3579999999999999999999999999999999999999985 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHhhCCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 871 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~~~ 871 (876)
.+++|||++|+....+...+++++|+++|+.||+ +.++|..++++.+...
T Consensus 77 --------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 77 --------------GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp --------------TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 3468999999999999999999999999999999 9999999999987653
No 42
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.77 E-value=2.1e-18 Score=164.74 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=111.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhH-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~-~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||||||++..+..++.+|+. .|+.|.++.++.+|++.+.....||+||+|+.|| ++||++++++||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~------ 77 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNS------ 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSG------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCc------
Confidence 35899999999999999999999 9999999999999999885327899999999999 999999999999721
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
..+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+++...
T Consensus 78 --------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 78 --------------RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp --------------GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred --------------ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 135799999999999999999999999999999999999999999887653
No 43
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=5.1e-18 Score=158.98 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHHhHhhhcCCEEEEEeCCCCCceEeecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhh
Q 002821 354 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 433 (876)
Q Consensus 354 ~L~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~p~~v~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~ 433 (876)
+|.+.+.+++..+ ..+++.+.+.++...+.....++..|.+|+.||++||+||++.|.|.|.+...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5677777777766 56677777777655444444568899999999999999999988887776431
Q ss_pred hhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCC
Q 002821 434 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 513 (876)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~ 513 (876)
.. +.|+|+|+|+||+++.
T Consensus 68 -------------------------------------------~~-~~i~v~D~G~gi~~~~------------------ 85 (124)
T 3zxq_A 68 -------------------------------------------DD-VRVEVVDDGVGISGDI------------------ 85 (124)
T ss_dssp -------------------------------------------EE-EEEEEEECCCSSCGGG------------------
T ss_pred -------------------------------------------CC-EEEEEEECCCCCCccc------------------
Confidence 12 6799999999999875
Q ss_pred CCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEEEEEEEeC
Q 002821 514 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 554 (876)
Q Consensus 514 ~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF~~~lp~~ 554 (876)
+||||+||+++++.|||++.+.|.+++|++|++++|+.
T Consensus 86 ---~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 86 ---TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp ---SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred ---cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 39999999999999999999999999999999999974
No 44
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.76 E-value=4.8e-18 Score=161.21 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=110.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..++.+|+..|+.|..+.++.+|+..+.....||+||+|+.||+++|++++++||+..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~-------- 78 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE-------- 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST--------
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC--------
Confidence 468999999999999999999999999999999999999885444499999999999999999999999731
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|+++....
T Consensus 79 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 79 -------------RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp -------------TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred -------------CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 24689999999999999999999999999999999999999999987654
No 45
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.76 E-value=1.9e-18 Score=161.87 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~~--------- 73 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-TRGYDAVFIDLNLPDTSGLALVKQLRALP--------- 73 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHSC---------
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhh---------
Confidence 58999999999999999999999999999999999999985 46799999999999999999999999742
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 872 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 872 (876)
..+++|||++|+....+. .+++.+|+++|+.||++.++|.+.++++.....
T Consensus 74 -----------~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 74 -----------MEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp -----------CSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred -----------ccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 135799999999999888 899999999999999999999999999877643
No 46
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.76 E-value=5.1e-18 Score=157.20 Aligned_cols=116 Identities=26% Similarity=0.389 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++..+..++..|+..|+. +..+.++.+|++.+. .+.||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~--------- 72 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKI--------- 72 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEECSCGGGCHHHHHHHHHHH---------
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhh---------
Confidence 58999999999999999999999999 568999999999885 4579999999999999999999999974
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|...+++.+
T Consensus 73 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 73 -------------DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp -------------CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 24689999999999999999999999999999999999999998764
No 47
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.76 E-value=4.4e-18 Score=160.95 Aligned_cols=116 Identities=21% Similarity=0.318 Sum_probs=107.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-NEFFNLALFXIKLPDMEGTELLEKAHKL---------- 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSBCSSSBHHHHHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 73 ------------RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp ------------CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998754
No 48
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.76 E-value=7.7e-18 Score=156.08 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=107.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+...|+..|+.|..+.++.+|++.+. .+.||+||+|+.||++||+++++++|+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~----------- 69 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHT-----------
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999885 4679999999999999999999999963
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|...+.+.+.
T Consensus 70 -----------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp -----------TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 246899999999999999999999999999999999999999987653
No 49
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.76 E-value=1.8e-18 Score=164.63 Aligned_cols=117 Identities=15% Similarity=0.287 Sum_probs=109.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~--mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..++.+|+..||.|.++.++.+|++.+. .+.||+||+|+.||+ ++|++++++||+.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~-------- 77 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-SDDAIGMIIEAHLEDKKDSGIELLETLVKR-------- 77 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-CTTEEEEEEETTGGGBTTHHHHHHHHHHHT--------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEeCcCCCCCccHHHHHHHHHhC--------
Confidence 58999999999999999999999999999999999999885 567999999999999 9999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 78 --------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 78 --------------GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp --------------TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999999999999998654
No 50
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.76 E-value=8.3e-18 Score=163.02 Aligned_cols=119 Identities=18% Similarity=0.448 Sum_probs=107.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEEEEcCHHHHHHHhC--------CCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLM--------PPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eA~~~~~--------~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
..+||||||++..+..+..+|++.|+ .|.++.++.+|++.+. ....||+||+|+.||+++|++++++||+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 35899999999999999999999998 8999999999999883 2467999999999999999999999997
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 799 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 799 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
.. ..+++|||++|+....+...+|+++|+++||.||++.++|..+|+++
T Consensus 84 ~~--------------------~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 84 NP--------------------HTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp ST--------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred cc--------------------cccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 31 24578999999999999999999999999999999999999988764
No 51
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.76 E-value=1.3e-17 Score=156.26 Aligned_cols=118 Identities=31% Similarity=0.456 Sum_probs=107.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++..+..++.+|+..|+ .+..+.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~l~~~l~~~~-------- 75 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDGLELLKTIRAXX-------- 75 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-TCCCCEEEEESCCSSSCHHHHHHHHHC----------
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 4799999999999999999999999 7999999999999985 46799999999999999999999999632
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 76 ------------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 76 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp ------------CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 134789999999999999999999999999999999999999998764
No 52
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.75 E-value=1.4e-18 Score=164.87 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=109.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcC-CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g-~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
..+||||||++..+..++.+|+..| |.|.++.++.+|++.+. .+.||+||+|+.||+++|++++++||+..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~------- 85 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-DTRPGIVILDLGGGDLLGKPGIVEARALW------- 85 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-TCCCSEEEEEEETTGGGGSTTHHHHHGGG-------
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-ccCCCEEEEeCCCCCchHHHHHHHHHhhC-------
Confidence 3589999999999999999999999 99999999999999884 57899999999999999999999999742
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
+++|||++|+....+...+|+++|+++|+.||++.++|..+|.+++..
T Consensus 86 ---------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 86 ---------------ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ---------------TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999999999999999998764
No 53
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.75 E-value=1.1e-17 Score=155.40 Aligned_cols=115 Identities=26% Similarity=0.401 Sum_probs=106.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+. .+.||+||+|+.||+++|+++++.||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~----------- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDENGLMLTRALRE----------- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHT-----------
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-cCCCCEEEEeCCCCCCChHHHHHHHHh-----------
Confidence 48999999999999999999999999999999999999885 467999999999999999999999996
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|...|++.+
T Consensus 71 ------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 71 ------------RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp ------------TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 13589999999999999999999999999999999999999998764
No 54
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.75 E-value=1.8e-17 Score=160.35 Aligned_cols=118 Identities=18% Similarity=0.322 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC--EEEEEcCHHHHHHHhCC------CCCccEEEEeCCCCCCCHHHHHHHHHhhcc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP------PHQFDACFMDIQMPEMDGFEATKIIREMEH 801 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eA~~~~~~------~~~~DlilmDi~MP~mdG~e~~~~IR~~~~ 801 (876)
.+||||||++..+..++.+|+..|+ .|..+.+|.+|++.+.. ...||+||+|+.||+|||++++++||+..
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~- 87 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP- 87 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT-
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc-
Confidence 4899999999999999999999887 89999999999999853 14699999999999999999999999731
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 802 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 802 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
..+++|||++|+....+...+++++|+++||.||++.++|..+|++.
T Consensus 88 -------------------~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 88 -------------------DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp -------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred -------------------CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 12478999999999999999999999999999999999999888763
No 55
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.75 E-value=1e-17 Score=160.51 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEEEEcCHHHHHHHhCC----CCCccEEEEeCCCCCCCHHHHHHHHHhhccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGFEATKIIREMEHN 802 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eA~~~~~~----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~ 802 (876)
..+||||||++..+..+..+|+..|+ .|.++.++.+|++.+.. ...||+||+|+.||+++|++++++||+....
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 35899999999999999999999999 99999999999998852 1679999999999999999999999974210
Q ss_pred ccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHhhCCCCC
Q 002821 803 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFFPPIP 872 (876)
Q Consensus 803 ~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~~~~~ 872 (876)
..+++|||++|+....+...+++.+| +++||.||++.++|..+|.+++....
T Consensus 89 ------------------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 89 ------------------MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp ------------------GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred ------------------ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 13578999999999999999999999 99999999999999999999887544
No 56
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.75 E-value=2e-17 Score=157.04 Aligned_cols=124 Identities=23% Similarity=0.429 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ... |+||+|+.||++||++++++||+..+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~-dlvllD~~lp~~~g~~~~~~l~~~~~~----- 78 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEH-KVVFMDVCMPGVENYQIALRIHEKFTK----- 78 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTC-SEEEEECCSSTTTTTHHHHHHHHHHC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-ccC-CEEEEeCCCCCCcHHHHHHHHHHhhhh-----
Confidence 4579999999999999999999999999999999999999885 344 999999999999999999999852110
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.....+|||++|+....+...+|+++|+++||.||++.++|..+|.+.+..
T Consensus 79 ------------~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 79 ------------QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp ------------CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred ------------ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 001224688999999999999999999999999999999999999987654
No 57
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.75 E-value=9.2e-18 Score=155.14 Aligned_cols=116 Identities=34% Similarity=0.491 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||||||++..+..++..|...|+.+..+.++.+|++.+. .+.||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILDLMLPEIDGLEVAKTIRKT---------- 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHH----------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHhC----------
Confidence 37999999999999999999999999999999999999885 4579999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
+++|||++|+........+++++|+++|+.||++.++|..++.+.+.
T Consensus 71 -------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 71 -------------SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp -------------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 25899999999999999999999999999999999999999987653
No 58
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.75 E-value=1.1e-17 Score=162.54 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=109.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|+..|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 83 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-SREVDLVISAAHLPQMDGPTLLARIHQQ--------- 83 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-cCCCCEEEEeCCCCcCcHHHHHHHHHhH---------
Confidence 469999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++| +++||.||++.++|..+|.+.+
T Consensus 84 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 84 -------------YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp -------------CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred -------------CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999 9999999999999999998765
No 59
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.75 E-value=2.9e-18 Score=164.99 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=110.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcC-CEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g-~~v~~a~~g~eA~~~~~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
+.+||||||++..+..+..+|+..| |.|..+.++.+|+..+... +.||+||+|+.||+++|++++++||+.
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~------- 92 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRL------- 92 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHH-------
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHh-------
Confidence 5699999999999999999999999 9999999999998876433 679999999999999999999999974
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+++|||++|+....+...+|+++|+++||.||++.++|..+|.+.+...
T Consensus 93 ---------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 93 ---------------HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp ---------------CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ---------------CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 24689999999999999999999999999999999999999999887654
No 60
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.75 E-value=1.4e-17 Score=155.03 Aligned_cols=115 Identities=23% Similarity=0.364 Sum_probs=106.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. .+.||+||+|+.||++||++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~---------- 72 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKNGLLLARELREQ---------- 72 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHH----------
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
+++|||++|+........+++++|+++|+.||++.++|..++++.+
T Consensus 73 -------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp -------------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 2589999999999999999999999999999999999999988754
No 61
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.74 E-value=9.4e-18 Score=177.35 Aligned_cols=117 Identities=28% Similarity=0.412 Sum_probs=108.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|+..|+.|.++.++.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 92 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR-ETRPDAVILDVXMPGMDGFGVLRRLRAD--------- 92 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHT---------
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 468999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+..+.+...+|+++|++|||.||++.++|..+|.+.+
T Consensus 93 -------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~ 139 (250)
T 3r0j_A 93 -------------GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 139 (250)
T ss_dssp -------------TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998765
No 62
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.74 E-value=4.6e-18 Score=162.59 Aligned_cols=117 Identities=30% Similarity=0.375 Sum_probs=107.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+.+||||||++..+..++.+|+..|+.|.++.++.+|++.+.....||+||+|+.||+ ++|++++++||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-------- 76 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-------- 76 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC--------
Confidence 4689999999999999999999999999999999999999854467999999999995 9999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+.+
T Consensus 77 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 77 ---------------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp ---------------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ---------------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 3689999999999989999999999999999999999999998764
No 63
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.74 E-value=1.1e-17 Score=158.69 Aligned_cols=118 Identities=28% Similarity=0.454 Sum_probs=108.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||||||++..+..+...|...|+.|..+.++.+|++.+. .+.||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 72 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-TEKPDLIVLDVMLPKLDGIEVCKQLRQQ---------- 72 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHT----------
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHcC----------
Confidence 58999999999999999999999999999999999999885 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+.+|||++|+........+++++|+++|+.||++.++|...|.+.+..
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 73 ------------KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp ------------TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 2368999999999988999999999999999999999999999887643
No 64
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.74 E-value=2.7e-18 Score=191.89 Aligned_cols=116 Identities=21% Similarity=0.321 Sum_probs=108.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||||||++.++..++.+|++.||.|..+.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllDi~mP~~dG~ell~~lr~~---------- 69 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-ELFFPVIVLDVWMPDGDGVNFIDFIKEN---------- 69 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HBCCSEEEEESEETTEETTTHHHHHHHH----------
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999985 4679999999999999999999999974
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|++.+.+...+|+++|++|||.||++.++|..+|.+.+
T Consensus 70 ------------~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l 116 (368)
T 3dzd_A 70 ------------SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAF 116 (368)
T ss_dssp ------------CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998765
No 65
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.74 E-value=5.8e-18 Score=160.04 Aligned_cols=120 Identities=16% Similarity=0.273 Sum_probs=107.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++..+..++.+|++.|+.+. ++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~l~~~~g~~~~~~l~~~--------- 71 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR--------- 71 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHT---------
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH-hcCCCEEEEecCCCCCChHHHHHHHHhc---------
Confidence 3799999999999999999999999998 8999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 872 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 872 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+....
T Consensus 72 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 72 -------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp -------------TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred -------------CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 346899999999999999999999999999999999999999998776543
No 66
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.74 E-value=1.3e-17 Score=158.03 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g--~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..++.+|+..| +.+..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-~~~~dlvilD~~lp~~~g~~~~~~l~~~-------- 74 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-EYNPNVVILDIEMPGMTGLEVLAEIRKK-------- 74 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHT--------
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHHH--------
Confidence 379999999999999999999887 56788999999999885 4579999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 75 --------------HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp --------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 3478999999999999999999999999999999999999999887653
No 67
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.74 E-value=2e-17 Score=160.14 Aligned_cols=120 Identities=21% Similarity=0.342 Sum_probs=110.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC--CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g--~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..+..+|+..| +.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~-------- 91 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-KESVDIAILDVEMPVKTGLEVLEWIRSE-------- 91 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-TSCCSEEEECSSCSSSCHHHHHHHHHHT--------
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-ccCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 589999999999999999999988 78999999999999985 5679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 872 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 872 (876)
.+++|||++|+..+.+...+++++|+++||.||++.++|..+|.+.+....
T Consensus 92 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 92 --------------KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp --------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred --------------CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 347899999999999999999999999999999999999999999876543
No 68
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.74 E-value=1.7e-17 Score=162.02 Aligned_cols=118 Identities=23% Similarity=0.391 Sum_probs=109.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCC--CccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPH--QFDACFMDIQMPEMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~--~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 805 (876)
..+||||||++..+..+..+|++.|+.+. ++.++.+|++.+. .. .||+||+|+.||+++|++++++||+.
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~-~~~~~~dliilD~~l~~~~g~~~~~~lr~~------ 108 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK-NHYPNIDIVTLXITMPKMDGITCLSNIMEF------ 108 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHGGGCCEEEECSSCSSSCHHHHHHHHHHH------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-hcCCCCCEEEEeccCCCccHHHHHHHHHhh------
Confidence 35899999999999999999999999998 9999999999885 34 68999999999999999999999974
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+.+|||++|+....+...+|+++|+++||.||++.++|..+|.+.+.
T Consensus 109 ----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 109 ----------------DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp ----------------CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred ----------------CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 246899999999999999999999999999999999999999998875
No 69
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.74 E-value=9.7e-18 Score=157.39 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=108.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++..+..++.+|+..|+ .+..+.++.+|++.+. ...||+||+|+.||++||++++++||+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~-------- 77 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-QNPHHLVISDFNMPKMDGLGLLQAVRANP-------- 77 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-TSCCSEEEECSSSCSSCHHHHHHHHTTCT--------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-cCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 5899999999999999999999999 8999999999999885 46799999999999999999999998631
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+.
T Consensus 78 ------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 78 ------------ATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp ------------TSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred ------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 1347899999999999999999999999999999999999999987653
No 70
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.74 E-value=6.6e-18 Score=161.10 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~-------- 76 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-RRPYAAMTVDLNLPDQDGVSLIRALRRDS-------- 76 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHTSG--------
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCc--------
Confidence 468999999999999999999999999999999999999985 46799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHH-HHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYE-ECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~-~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+++|||++|+....+... +++++|+++|+.||++.++|..+|.+.+.
T Consensus 77 ------------~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 77 ------------RTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp ------------GGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 13478999999988887777 89999999999999999999999987654
No 71
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.1e-17 Score=159.57 Aligned_cols=116 Identities=18% Similarity=0.323 Sum_probs=107.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvllD~~l~~~~g~~l~~~l~~~---------- 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-RSKPQLIILDLKLPDMSGEDVLDWINQN---------- 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-HHCCSEEEECSBCSSSBHHHHHHHHHHT----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhc----------
Confidence 38999999999999999999999999999999999999885 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 74 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 120 (137)
T 3cfy_A 74 ------------DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHL 120 (137)
T ss_dssp ------------TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998654
No 72
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.74 E-value=1.4e-17 Score=158.51 Aligned_cols=115 Identities=28% Similarity=0.412 Sum_probs=106.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~l~~~l~~~---------- 73 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-SNKYDLIFLEIILSDGDGWTLCKKIRNV---------- 73 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HCCCSEEEEESEETTEEHHHHHHHHHTT----------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHccC----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.++|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 74 -------------~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 74 -------------TTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp -------------CCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 1589999999999999999999999999999999999999988754
No 73
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.74 E-value=3.7e-17 Score=155.05 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=108.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEEEEcCHHHHHHHhCCC------CCccEEEEeCCCCCCCHHHHHHHHHhhc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP------HQFDACFMDIQMPEMDGFEATKIIREME 800 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eA~~~~~~~------~~~DlilmDi~MP~mdG~e~~~~IR~~~ 800 (876)
+++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ..||+||+|+.||+++|++++++||+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 999999999999998641 6799999999999999999999999732
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 801 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 801 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+++
T Consensus 82 --------------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 82 --------------------TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp --------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred --------------------ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999999888654
No 74
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=2.4e-17 Score=158.04 Aligned_cols=119 Identities=25% Similarity=0.483 Sum_probs=108.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~--v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||||||++..+..+..+|+..|+. |.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~------ 77 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-QAKYDLIILDIGLPIANGFEVMSAVRKPG------ 77 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-TCCCSEEEECTTCGGGCHHHHHHHHHSSS------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcc------
Confidence 458999999999999999999999987 889999999999985 56799999999999999999999999731
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHhhC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFF 868 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~ 868 (876)
..+.+|||++|+..+.+...+|+++|+++||.||+ +.++|..+|.+.+
T Consensus 78 --------------~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 78 --------------ANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp --------------TTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred --------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 24579999999999999999999999999999999 9999998887654
No 75
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.73 E-value=3.2e-17 Score=156.91 Aligned_cols=117 Identities=20% Similarity=0.343 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~-~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++..+..+..+|+..|+.|.++.++.+|++.+.. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 74 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI--------- 74 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh---------
Confidence 589999999999999999999999999999999999998852 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 75 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 75 -------------TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp -------------CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998754
No 76
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.73 E-value=2.6e-17 Score=156.91 Aligned_cols=120 Identities=27% Similarity=0.390 Sum_probs=105.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 73 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-ATPPDLVLLDIMMEPMDGWETLERIKTDP--------- 73 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHST---------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHcCc---------
Confidence 48999999999999999999999999999999999999885 45799999999999999999999999731
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++|+.........+..+|+++||.||++.++|..+|.+.+..
T Consensus 74 -----------~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 74 -----------ATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp -----------TTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred -----------ccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 13478999999987766666667778899999999999999999887643
No 77
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.73 E-value=1.8e-17 Score=157.47 Aligned_cols=118 Identities=21% Similarity=0.291 Sum_probs=109.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 76 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-LHAPDVIITDIRMPKLGGLEMLDRIKAG--------- 76 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHT---------
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+++.
T Consensus 77 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 77 -------------GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp -------------TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999998753
No 78
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.73 E-value=3.9e-17 Score=153.89 Aligned_cols=121 Identities=22% Similarity=0.345 Sum_probs=104.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+.+||||||++..+..++.+|++.|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~------- 77 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS-TFEPAIMTLDLSMPKLDGLDVIRSLRQNKV------- 77 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HTCCSEEEEESCBTTBCHHHHHHHHHTTTC-------
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcCc-------
Confidence 468999999999999999999999999999999999999885 467999999999999999999999997321
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
...+|||++|+.... ...+++++|+++|+.||++.++|..+|+++....
T Consensus 78 -------------~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 78 -------------ANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp -------------SSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred -------------cCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 134667766665555 7889999999999999999999999999887643
No 79
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.73 E-value=2.2e-17 Score=168.95 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=108.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+. .+.||+||+|+.||+|||++++++||+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~--------- 73 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-PEQHGCLVLDMRMPGMSGIELQEQLTAI--------- 73 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-TTSCEEEEEESCCSSSCHHHHHHHHHHT---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-ccCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999885 5679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+..+.+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 74 -------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 120 (208)
T 1yio_A 74 -------------SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGL 120 (208)
T ss_dssp -------------TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999988754
No 80
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.73 E-value=1.9e-17 Score=152.36 Aligned_cols=114 Identities=25% Similarity=0.413 Sum_probs=103.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++..|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~---------- 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-SGNYDLVILDIEMPGISGLEVAGEIRKK---------- 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcc----------
Confidence 37999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+..... .+++++|+++|+.||++.++|..++.+.+
T Consensus 71 ------------~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 71 ------------KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ------------CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ------------CCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 2468999999976654 67889999999999999999999998765
No 81
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.72 E-value=2.4e-17 Score=155.50 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=102.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..++.+|+ .|+.|.++.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~-------- 73 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL-AHPPDVLISDVNMDGMDGYALCGHFRSEP-------- 73 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHST--------
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhCC--------
Confidence 3589999999999999999999 8999999999999999985 46799999999999999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+++|||++|+....+. .+++++|+++|+.||++.++|..+|++.+.
T Consensus 74 ------------~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 74 ------------TLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp ------------TTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 134799999999988777 899999999999999999999999988764
No 82
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=3.1e-17 Score=158.99 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=109.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCE--EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~--v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 805 (876)
.+.+||||||++..+..++.+|++.|+. +.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~------ 86 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-AHLPDVALLDYRMPGMDGAQVAAAVRSY------ 86 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHT------
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc------
Confidence 3569999999999999999999999954 558999999999885 4679999999999999999999999973
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 87 ----------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 87 ----------------ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp ----------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred ----------------CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 34689999999999999999999999999999999999999999876543
No 83
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.72 E-value=1.2e-17 Score=156.08 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=108.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLAWMLPGGSGIQFIKHLRRES--------- 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-SSCCSEEEEESEETTEEHHHHHHHHHTST---------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhCc---------
Confidence 48999999999999999999999999999999999999885 46799999999999999999999999631
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 73 -----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp -----------TTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred -----------ccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 12578999999999888999999999999999999999999999887643
No 84
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.72 E-value=4.3e-17 Score=155.77 Aligned_cols=118 Identities=19% Similarity=0.355 Sum_probs=109.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+ ||+++|+++++.||+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~-~~~~~g~~~~~~l~~~--------- 72 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-REKIDLVFVDV-FEGEESLNLIRRIREE--------- 72 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-TSCCSEEEEEC-TTTHHHHHHHHHHHHH---------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-ccCCCEEEEeC-CCCCcHHHHHHHHHHH---------
Confidence 358999999999999999999999999999999999999995 46799999999 9999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 73 -------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 73 -------------FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp -------------CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 2468999999999999999999999999999999999999999987644
No 85
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.72 E-value=3.1e-17 Score=151.84 Aligned_cols=115 Identities=23% Similarity=0.353 Sum_probs=105.7
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..++..|+..|+.+..+.++.+|+..+. ...||+||+|+.||+++|++++++||+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~------------ 69 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQ------------ 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESEETTEEHHHHHHHHHT------------
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHh------------
Confidence 7999999999999999999999999999999999998874 457999999999999999999999984
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..++.+.+.
T Consensus 70 -----------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 70 -----------WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp -----------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999999987643
No 86
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.72 E-value=2.8e-17 Score=173.86 Aligned_cols=118 Identities=23% Similarity=0.353 Sum_probs=109.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+|||++++++||+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlvllD~~lp~~~G~~l~~~lr~---------- 105 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR-EDHPDLILLDLGLPDFDGGDVVQRLRK---------- 105 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEEECCSCHHHHHHHHHHHHT----------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHc----------
Confidence 468999999999999999999999999999999999999885 467999999999999999999999996
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+.+|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.+..
T Consensus 106 -------------~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 106 -------------NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp -------------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 2368999999999999999999999999999999999999999987764
No 87
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.72 E-value=2.3e-17 Score=155.34 Aligned_cols=119 Identities=21% Similarity=0.334 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..++.+|... |+.+. .+.++.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~~------- 74 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-EKRPDILLLDIIMPHLDGLAVLERIRAGF------- 74 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHHC-------
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhcC-------
Confidence 37999999999999999999987 88875 7999999999885 45799999999999999999999999721
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 75 --------------EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp --------------SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 2357999999999999999999999999999999999999999987644
No 88
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.72 E-value=5.2e-17 Score=157.34 Aligned_cols=117 Identities=22% Similarity=0.325 Sum_probs=106.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|+. |+.|.++.++.+|++.+....+||+||+|+.||+++|++++++||+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI--------- 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhc---------
Confidence 46899999999999999999986 99999999999999998644457999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+|||++|+..+.+...+++++| +++||.||++.++|..+|.+.+
T Consensus 74 -------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 74 -------------SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp -------------CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999 9999999999999999998754
No 89
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.71 E-value=7.6e-17 Score=153.82 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=109.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhH-cCCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKR-YGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~-~g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||||||++..+..+..+|+. .|+. |..+.++.+|++.+. ...||+||+|+.||+++|++++++||+..
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~------ 80 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-TVKPDVVMLDLMMVGMDGFSICHRIKSTP------ 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-HTCCSEEEEETTCTTSCHHHHHHHHHTST------
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-hcCCCEEEEecccCCCcHHHHHHHHHhCc------
Confidence 46899999999999999999999 8999 999999999999885 46799999999999999999999999721
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|++.+..
T Consensus 81 --------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 --------------ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp --------------TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred --------------cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 13579999999999999999999999999999999999999999887643
No 90
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.71 E-value=7.1e-17 Score=155.00 Aligned_cols=120 Identities=23% Similarity=0.424 Sum_probs=108.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEEEEcCHHHHHHHhCCC---------CCccEEEEeCCCCCCCHHHHHHHHH
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP---------HQFDACFMDIQMPEMDGFEATKIIR 797 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eA~~~~~~~---------~~~DlilmDi~MP~mdG~e~~~~IR 797 (876)
+.+||||||++..+..++.+|++.|+ .|..+.++.+|++.+... ..||+||+|+.||+++|++++++||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 46899999999999999999999998 899999999999988531 6799999999999999999999999
Q ss_pred hhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 798 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 798 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
+.. ..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+++
T Consensus 86 ~~~--------------------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 86 QDE--------------------VLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp TST--------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred hCc--------------------ccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 732 124689999999999999999999999999999999999998887654
No 91
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.71 E-value=6.5e-17 Score=166.48 Aligned_cols=117 Identities=23% Similarity=0.344 Sum_probs=106.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g-~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~-------- 76 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 76 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEEETTSTTSCHHHHHHHHHHS--------
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 489999999999999999999874 887 68999999999885 4579999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+...+++++|+++||.||++.++|..+|.+.+.
T Consensus 77 --------------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 77 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp --------------CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred --------------CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999999999987654
No 92
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.70 E-value=1.6e-16 Score=154.34 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=108.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+.+||||||++..+..+..+|+..|+.|.++.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-GTSVQLVISDMRMPEMGGEVFLEQVAKS-------- 76 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-TSCCSEEEEESSCSSSCHHHHHHHHHHH--------
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHh--------
Confidence 3568999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcC-CCeeEeCCCCHHHHHHHHHhhC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG-MDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG-~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+|||++|+....+...+++++| +++|+.||++.++|..+|.+.+
T Consensus 77 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 77 --------------YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp --------------CTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred --------------CCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 2468999999999999999999998 9999999999999999988754
No 93
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.70 E-value=1.2e-15 Score=175.76 Aligned_cols=257 Identities=19% Similarity=0.201 Sum_probs=182.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.++|+||+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..++........
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~---G~~~~~~l~~~~~~~~~ 76 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMD---GFTVCRKLKDDPTTRHI 76 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHhcCcccCCC
Confidence 4799999999999999999999999999999999999887653 468899998765433 23455666654333333
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCCC---------CCCCCCCCCCcchhhccCCCCeE
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---------KGNIRNWELPSMSLRHLLLGRKI 732 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~I 732 (876)
++++++........... ...+...++.||+....+...+...+.... ...................+.+|
T Consensus 77 pii~lt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (459)
T 1w25_A 77 PVVLITALDGRGDRIQG-LESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRV 155 (459)
T ss_dssp CEEEEECSSCHHHHHHH-HHHTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTTTCCCCCCSSCSCEE
T ss_pred CEEEEECCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhhHhhhhcccccchhhhhhhhhhhcCCCCeE
Confidence 44444433222111111 112556899999999999887766542100 00000000000000111235689
Q ss_pred EEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccccc
Q 002821 733 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 812 (876)
Q Consensus 733 LvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~ 812 (876)
|+|||+..++..+...|.. .+.+....++.++... ....||+++||++||+|||+++++.||....
T Consensus 156 livdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~--~~~~~dlil~D~~mp~~dG~~~~~~ir~~~~----------- 221 (459)
T 1w25_A 156 LIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS--AGGPVDLVIVNAAAKNFDGLRFTAALRSEER----------- 221 (459)
T ss_dssp EEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH--HHSSCSEEEEETTCSSSCHHHHHHHHHTSGG-----------
T ss_pred EEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh--ccCCCCEEEEecCCCCCcHHHHHHHHHhCcc-----------
Confidence 9999999999988888875 4677788888888643 2356999999999999999999999997431
Q ss_pred chhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 813 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 813 ~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
..++||+++|+....+...+|+++||++|+.||++.+++...+..+
T Consensus 222 ---------~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~ 267 (459)
T 1w25_A 222 ---------TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQ 267 (459)
T ss_dssp ---------GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred ---------ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999887766543
No 94
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.70 E-value=2.6e-17 Score=190.01 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=96.8
Q ss_pred eEeec-HHHHHHHHHHHHHHHhhccCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCcccccc
Q 002821 388 TLIGD-PGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 462 (876)
Q Consensus 388 ~v~~D-~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (876)
.+.+| +.+|.||+.|||+||+||+..| .|.|.+.....
T Consensus 23 ~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~------------------------------------- 65 (530)
T 2zbk_B 23 AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------------------------- 65 (530)
T ss_dssp GTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET-------------------------------------
T ss_pred eEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC-------------------------------------
Confidence 34445 5999999999999999999775 46666542210
Q ss_pred CCCCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC-CCCCcccccHHHHHHHHHHcCCE-EEEEEe
Q 002821 463 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSI 540 (876)
Q Consensus 463 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~-~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~ 540 (876)
+...+.|+|+|||+||+++.++++|+||++.+.... +..+|+||||+||+.++++|||+ |++.|.
T Consensus 66 -------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~ 132 (530)
T 2zbk_B 66 -------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS 132 (530)
T ss_dssp -------------TTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEE
T ss_pred -------------cCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEe
Confidence 012478999999999999999999999988765433 45689999999999999999999 999999
Q ss_pred CCCcE-EEEEEEEeCC
Q 002821 541 PNIGS-TFTFTAVFGN 555 (876)
Q Consensus 541 ~g~Gs-tF~~~lp~~~ 555 (876)
++.|+ +|+|++|+..
T Consensus 133 ~~~g~~~~~~~Lpl~~ 148 (530)
T 2zbk_B 133 PVNSKRIYTFKLKIDI 148 (530)
T ss_dssp CTTCSEEEEEEEEEET
T ss_pred cCCCeEEEEEEEEecc
Confidence 99987 9999998864
No 95
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.70 E-value=5.1e-17 Score=153.44 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=107.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..++.+|+..|+.|.++.++.+|++.+. .. ||+||+|+.||+++|++++++||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~-~dlvi~D~~l~~~~g~~~~~~l~~~--------- 71 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-NK-QDIIILDLMMPDMDGIEVIRHLAEH--------- 71 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-CT-TEEEEEECCTTTTHHHHHHHHHHHT---------
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-cC-CCEEEEeCCCCCCCHHHHHHHHHhC---------
Confidence 358999999999999999999999999999999999998875 45 9999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCH-----HhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQ-----ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 872 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~-----~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 872 (876)
.+.+|||++|+.... +...+++.+|+++|+.||++.++|..+|++++....
T Consensus 72 -------------~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 72 -------------KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp -------------TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred -------------CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 346899999998875 677779999999999999999999999999886543
No 96
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.70 E-value=4.8e-17 Score=155.83 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=98.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhH--cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKR--YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~--~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
.+||||||++..+..+...|.. .|+.+. .+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~l~~~l~~~------- 74 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-KHPPNVLLTDVRMPRMDGIELVDNILKL------- 74 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-TSCCSEEEEESCCSSSCHHHHHHHHHHH-------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh-------
Confidence 4899999999999999999973 688777 8999999999885 4679999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 75 ---------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 121 (141)
T 3cu5_A 75 ---------------YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSI 121 (141)
T ss_dssp ---------------CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999998888999999999999999999999999888654
No 97
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.70 E-value=1.8e-16 Score=154.11 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=107.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+.+||||||++..+..+..+|...|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dliild~~l~~~~g~~~~~~l~~~--------- 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-ADFAGIVISDIRMPGMDGLALFRKILAL--------- 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-TTCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh---------
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 73 -------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 73 -------------DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp -------------CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998764
No 98
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.70 E-value=7e-17 Score=155.28 Aligned_cols=119 Identities=16% Similarity=0.318 Sum_probs=108.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+..
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 78 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-KTHPHLIITEANMPKISGMDLFNSLKKNP-------- 78 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHTST--------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-cCCCCEEEEcCCCCCCCHHHHHHHHHcCc--------
Confidence 458999999999999999999999999999999999999885 45799999999999999999999999721
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 79 ------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 79 ------------QTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp ------------TTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 135799999999999999999999999999999999999999998765
No 99
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.70 E-value=2.9e-17 Score=185.71 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=103.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++.++..++.+|++.||.|.++.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~lr~~---------- 74 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE-SEQPDLVICDLRMPQIDGLELIRRIRQT---------- 74 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH-HSCCSEEEECCCSSSSCTHHHHHHHHHT----------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999985 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~ 868 (876)
.+++|||++|+..+.+...+|+++|+++||.||+ +.+.|..+|.+.+
T Consensus 75 ------------~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 75 ------------ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp ------------TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999 6888888777654
No 100
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.69 E-value=1.4e-16 Score=154.45 Aligned_cols=121 Identities=26% Similarity=0.317 Sum_probs=110.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhH-cCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||||||++..+..+..+|+. .|+.+. .+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~------- 76 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR-ETTPDIVVMDLTLPGPGGIEATRHIRQW------- 76 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH-TTCCSEEEECSCCSSSCHHHHHHHHHHH-------
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHh-------
Confidence 35899999999999999999998 799988 8999999999885 4679999999999999999999999974
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 872 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~~ 872 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+....
T Consensus 77 ---------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 77 ---------------DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp ---------------CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred ---------------CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 246899999999999999999999999999999999999999999876543
No 101
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.69 E-value=5.6e-17 Score=185.31 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=97.1
Q ss_pred EeecHHHHHHHHHHHHHHHhhccCCC----eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002821 389 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 464 (876)
Q Consensus 389 v~~D~~rl~qIl~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (876)
+.+|+.+|.|||.|||+||+||+..| .|.|.+...+.
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~--------------------------------------- 66 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--------------------------------------- 66 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET---------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC---------------------------------------
Confidence 45688999999999999999999765 46666543210
Q ss_pred CCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC-CCCCcccccHHHHHHHHHHcCCE-EEEEEeCC
Q 002821 465 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPN 542 (876)
Q Consensus 465 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~-~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~g 542 (876)
+...+.|+|+|||+||+++.++++|++|++.+.... +..+|+||||++|+.++++|||+ |++.|.++
T Consensus 67 -----------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~ 135 (471)
T 1mu5_A 67 -----------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPV 135 (471)
T ss_dssp -----------TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECT
T ss_pred -----------cCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecC
Confidence 012478999999999999999999999988765433 45689999999999999999999 99999999
Q ss_pred CcE-EEEEEEEeCC
Q 002821 543 IGS-TFTFTAVFGN 555 (876)
Q Consensus 543 ~Gs-tF~~~lp~~~ 555 (876)
.|+ +|+|++|+..
T Consensus 136 ~g~~~~~~~Lpl~~ 149 (471)
T 1mu5_A 136 NSKRIYTFKLKIDI 149 (471)
T ss_dssp TCSEEEEEEEEECT
T ss_pred CCceEEEEEEeccc
Confidence 997 9999999864
No 102
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.69 E-value=1.6e-16 Score=151.07 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=108.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFN 804 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~ 804 (876)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.|| +++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~----- 77 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-EENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ----- 77 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-HSCEEEEEEETTTTC-----CCHHHHHHHHHHH-----
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-cCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh-----
Confidence 58999999999999999999999999999999999999985 46799999999999 99999999999973
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 78 -----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 78 -----------------YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp -----------------CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred -----------------CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999999999999999999987654
No 103
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.69 E-value=6.7e-17 Score=165.20 Aligned_cols=116 Identities=28% Similarity=0.381 Sum_probs=105.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
..+||||||++..+..+..+|...||.|. .+.+|.+|++.+. .+.||+||+|+.||+|||+++++.||+.
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-~~~~dlvi~D~~~p~~~g~~~~~~l~~~-------- 83 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-LHKPDLVIMDVKMPRRDGIDAASEIASK-------- 83 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHT--------
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCChHHHHHHHHhc--------
Confidence 35899999999999999999999999998 8999999999885 4679999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
...|||++|+....+...+++++|+++||.||++.++|..+|.+.+
T Consensus 84 ---------------~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 129 (205)
T 1s8n_A 84 ---------------RIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAV 129 (205)
T ss_dssp ---------------TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHH
T ss_pred ---------------CCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 1359999999999999999999999999999999999999887654
No 104
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.69 E-value=7.1e-17 Score=154.12 Aligned_cols=119 Identities=24% Similarity=0.372 Sum_probs=108.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+. .+.||+||+|+.||+++|++++++||+..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 77 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWDTIRAILDNS-------- 77 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TCCCEEEEEESCCSSSCHHHHHHHHHHTT--------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 468999999999999999999999999999999999999985 46799999999999999999999999721
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 78 ------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 78 ------------LEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp ------------CCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred ------------ccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 135789999999998888899999999999999999999999998764
No 105
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.69 E-value=4.3e-17 Score=155.55 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=97.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+.. +.|.++.++.+|++.+. .+.||+||+|+.||++||++++++||+..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 72 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID-HHHPDLVILDMDIIGENSPNLCLKLKRSK--------- 72 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH-HHCCSEEEEETTC------CHHHHHHTST---------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHcCc---------
Confidence 58999999999999999999988 99999999999999885 46799999999999999999999999732
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+++|||++|+....+...+|+++|+++|+.||++.++|..+|.+.+
T Consensus 73 -----------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 73 -----------GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp -----------TCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 125799999999999999999999999999999999999999998754
No 106
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.69 E-value=8.6e-17 Score=166.55 Aligned_cols=116 Identities=27% Similarity=0.420 Sum_probs=107.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. .+.||+||+|+.||++||++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~lr~~---------- 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL-NEPFDVVILDIMLPVHDGWEILKSMRES---------- 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHT----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 72 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 118 (225)
T 1kgs_A 72 ------------GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALI 118 (225)
T ss_dssp ------------TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHH
Confidence 24789999999999999999999999999999999999999998764
No 107
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.68 E-value=1.2e-16 Score=184.22 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++.++..+..+|+..|+.|..+.+|.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~l~~~~--------- 71 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA-RDLPDIILLDVMMPGMDGFTVCRKLKDDP--------- 71 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHST---------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHhcCc---------
Confidence 48999999999999999999999999999999999999885 45799999999999999999999999732
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+++|||++|+..+.+...+|+++|++|||.||++.++|..+|.+.+
T Consensus 72 -----------~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~ 119 (459)
T 1w25_A 72 -----------TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 119 (459)
T ss_dssp -----------TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHH
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 134799999999999999999999999999999999999999887643
No 108
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.68 E-value=2.7e-16 Score=150.26 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=108.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEEEEcCHHHHHHHhCC-----CCCccEEEEeCCCCCCCHHHHHHHHHhhcc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP-----PHQFDACFMDIQMPEMDGFEATKIIREMEH 801 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eA~~~~~~-----~~~~DlilmDi~MP~mdG~e~~~~IR~~~~ 801 (876)
..+||||||++..+..+..+|++.|+ .|..+.++.+|++.+.. ...||+||+|+.||+++|+++++.||+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~- 85 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS- 85 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc-
Confidence 35899999999999999999999998 99999999999998853 25799999999999999999999999732
Q ss_pred cccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 802 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 802 ~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
..+++|||++|+....+...+++++|+++|+.||++.++|..++..+..
T Consensus 86 -------------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 -------------------SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp -------------------GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred -------------------cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1246899999999999999999999999999999999999999877543
No 109
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.68 E-value=2e-16 Score=150.75 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=102.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+.. +.|..+.++.+|++.+. .+.||+||+|+.||+|||++++++||+.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~---------- 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-EEWVQVIICDQRMPGRTGVDFLTEVRER---------- 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-HSCEEEEEEESCCSSSCHHHHHHHHHHH----------
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHHh----------
Confidence 37999999999999999999875 99999999999999885 4579999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHc-CCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS-GMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~a-G~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+........+++.. |+++|+.||++.++|..+|.+.+
T Consensus 70 ------------~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 117 (139)
T 2jk1_A 70 ------------WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAA 117 (139)
T ss_dssp ------------CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHH
Confidence 246899999999888888888876 59999999999999999987653
No 110
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.68 E-value=2.1e-16 Score=150.37 Aligned_cols=116 Identities=23% Similarity=0.351 Sum_probs=107.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||||||++..+..+..+|+..|+.+. ++.++.+|++.+. .+.||+||+|+.|| +++|+++++.||+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~~~~~~~g~~~~~~l~~~------- 80 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-DLRPDIALVDIMLCGALDGVETAARLAAG------- 80 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCCSSSCHHHHHHHHHHH-------
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCCHHHHHHHHHhC-------
Confidence 46899999999999999999999999999 5999999999885 45799999999999 89999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 81 ----------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 81 ----------------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp ----------------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999998765
No 111
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.68 E-value=8.3e-17 Score=154.63 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=93.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHc-CCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 805 (876)
.+.+||||||++..+..++.+|++. |+.++ ++.++.+|++.+.....||+||+|+.||++||++++++||+..
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~----- 86 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKT----- 86 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHC-----
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----
Confidence 3568999999999999999999998 88865 8999999999885432799999999999999999999999731
Q ss_pred cccccccchhhhccCCCCCCcEEEEcC--CCCHHhHHHHHHcCCCeeEeCCCCHHHH
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTA--DVIQATYEECLRSGMDGYVSKPFEAEQL 860 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa--~~~~~~~~~~~~aG~d~yl~KP~~~~~L 860 (876)
..|||++|+ ....+...+|+++|+++||.||++.++|
T Consensus 87 ------------------~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 87 ------------------RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp ------------------CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred ------------------CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 378888887 5666778899999999999999994433
No 112
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.67 E-value=1.5e-16 Score=179.01 Aligned_cols=115 Identities=24% Similarity=0.429 Sum_probs=107.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..++.+|+..||.|..+.+|.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~ell~~lr~~----------- 69 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-EKHFNVVLLDLLLPDVNGLEILKWIKER----------- 69 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHH-----------
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhh-----------
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+..+.+...+|+++|++|||.||++.++|..+|.+.+
T Consensus 70 -----------~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 70 -----------SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp -----------CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999887754
No 113
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.67 E-value=2.9e-16 Score=146.17 Aligned_cols=119 Identities=21% Similarity=0.309 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++..+..+...|++.|+.|..+.++.+|++.+. .+.||+||+|+.|| +++|++++++||+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~-------- 76 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-RDRPDLVVLAVDLSAGQNGYLICGKLKKDD-------- 76 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-HHCCSEEEEESBCGGGCBHHHHHHHHHHST--------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-hcCCCEEEEeCCCCCCCCHHHHHHHHhcCc--------
Confidence 58999999999999999999999999999999999999885 46799999999999 999999999999732
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++ +....+...+++++|+++|+.||++.++|...|++.+..
T Consensus 77 ------------~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 77 ------------DLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp ------------TTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred ------------cccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 1357899999 888888899999999999999999999999999987654
No 114
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.67 E-value=2.9e-16 Score=164.52 Aligned_cols=118 Identities=25% Similarity=0.407 Sum_probs=109.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~~~~~lr~~---------- 74 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-ELRPDLVLLDLMLPGMNGIDVCRVLRAD---------- 74 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHTT----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999962
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 75 -------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 75 -------------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp -------------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred -------------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 2689999999999999999999999999999999999999999887653
No 115
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.67 E-value=2e-16 Score=152.69 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=83.1
Q ss_pred ecHHHHHHHHHHHHHHHhhccCC----CeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCC
Q 002821 391 GDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 466 (876)
Q Consensus 391 ~D~~rl~qIl~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (876)
.|...+.+++.||+.||+||+.. |.|.|.+...+
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~------------------------------------------ 72 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIED------------------------------------------ 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEET------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeC------------------------------------------
Confidence 58899999999999999999954 77777764321
Q ss_pred CCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEE
Q 002821 467 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 546 (876)
Q Consensus 467 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~Gst 546 (876)
..+.|+|+|+|+||+ .++++|+||++.+. ...|+||||+||+++++ +|.++|.+++||+
T Consensus 73 -----------~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~ 131 (145)
T 1th8_A 73 -----------GVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTT 131 (145)
T ss_dssp -----------TEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEE
T ss_pred -----------CEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEE
Confidence 247899999999999 88999999997543 34689999999999988 9999999999999
Q ss_pred EEEEEEeCCC
Q 002821 547 FTFTAVFGNG 556 (876)
Q Consensus 547 F~~~lp~~~~ 556 (876)
|++++|+...
T Consensus 132 v~~~lp~~~~ 141 (145)
T 1th8_A 132 VYLKKHGIHH 141 (145)
T ss_dssp EEEEECCC--
T ss_pred EEEEEecccc
Confidence 9999998653
No 116
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.66 E-value=6.4e-16 Score=145.33 Aligned_cols=119 Identities=25% Similarity=0.373 Sum_probs=106.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 807 (876)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+.....||+||+|+.||+ ++|++++++||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~-------- 76 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREI-------- 76 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHH--------
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhc--------
Confidence 4689999999999999999999999999999999999999853227999999999997 9999999999974
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+++|||++|+....+...+++++| +|+.||++.++|..+|++++...
T Consensus 77 --------------~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 77 --------------DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp --------------CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred --------------CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 2468999999999888888887776 89999999999999999877543
No 117
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.66 E-value=2e-16 Score=164.66 Aligned_cols=116 Identities=28% Similarity=0.445 Sum_probs=107.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~---------- 76 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT-ENRPDAIVLDINMPVLDGVSVVTALRAM---------- 76 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESSCSSSCHHHHHHHHHHT----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999973
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+
T Consensus 77 ------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 123 (233)
T 1ys7_A 77 ------------DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALL 123 (233)
T ss_dssp ------------TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999998764
No 118
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.66 E-value=5.6e-17 Score=168.48 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=104.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhH-cCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh-hccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKR-YGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE-MEHNFNNR 806 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~-~g~~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~-~~~~~~~~ 806 (876)
.+||||||++..+..++.+|++ .|+.|.. +.++.+|+..+...+.||+||+|++||+|||++++++||+ .
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~------- 80 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHIS------- 80 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHH-------
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhh-------
Confidence 4899999999999999999995 6888865 4677777764324567999999999999999999999997 3
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+++|||++|+..+.+....++++|++|||.||++.++|..+|.+.+..
T Consensus 81 ---------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 81 ---------------CPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp ---------------CTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred ---------------CCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999987654
No 119
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.66 E-value=3.7e-16 Score=151.58 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=98.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..+..+|+.. |+ .|..+.++.+|++.+.....||+||+|+.||+++|++++++||+.
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 75 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRF-------- 75 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHH--------
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHh--------
Confidence 48999999999999999999998 88 788999999999998542679999999999999999999999974
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+.+|||++|+....+...+++++|+++|+.||++.++|..+|.+.+...
T Consensus 76 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 76 --------------DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp --------------CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred --------------CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34689999999999999999999999999999999999999999877644
No 120
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.66 E-value=5.4e-16 Score=142.10 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=105.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
++||||||++..+..+..+|+..|+.|..+.++.+|++.+. .+.||+||+|+.||+++|+++++.||+..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-~~~~dlii~d~~~~~~~~~~~~~~l~~~~--------- 71 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-LLQPIVILMAWPPPDQSCLLLLQHLREHQ--------- 71 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEECSTTCCTHHHHHHHHHHTC---------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcc---------
Confidence 58999999999999999999999999999999999999885 45799999999999999999999999742
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
..+++|||++|+..... +++++|+++|+.||++.++|...+.+.+..
T Consensus 72 -----------~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 118 (119)
T 2j48_A 72 -----------ADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCPP 118 (119)
T ss_dssp -----------CCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCCC
T ss_pred -----------ccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhcC
Confidence 12578999999987766 899999999999999999999999988754
No 121
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.66 E-value=3.4e-16 Score=162.75 Aligned_cols=117 Identities=26% Similarity=0.362 Sum_probs=108.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~---------- 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-RAGADIVLLDLMLPGMSGTDVCKQLRAR---------- 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHH----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHcC----------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999972
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
+++|||++|+....+...+++++|+++|+.||++.++|..+|.+.+..
T Consensus 74 -------------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 74 -------------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp -------------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred -------------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999987654
No 122
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.65 E-value=3e-16 Score=149.75 Aligned_cols=120 Identities=36% Similarity=0.500 Sum_probs=102.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+....
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~------- 82 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-NRQFDVIIMDIQMPVMDGLEAVSEIRNYERT------- 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH-HSCCSEEEECTTCCSSCHHHHHHHHHHHHHH-------
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHhhhhh-------
Confidence 48999999999999999999999999999999999999885 4579999999999999999999999974210
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
...+.+|||++|+........ ++|+++||.||++.++|..+|.+.+..
T Consensus 83 ----------~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 83 ----------HNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp ----------HTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred ----------cCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 012468999999876655433 789999999999999999999987653
No 123
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.65 E-value=8.4e-16 Score=151.31 Aligned_cols=120 Identities=24% Similarity=0.333 Sum_probs=104.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcC-CE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g-~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||||||++..+..++.+|+..| +. +.++.++.+|++.+. ...||+||+|+.||++||++++++||+.
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~l~~~lr~~------- 96 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-ELKPDVITMDIEMPNLNGIEALKLIMKK------- 96 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHH-------
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-cCCCCEEEEeCCCCCCCHHHHHHHHHhc-------
Confidence 3589999999999999999999875 33 457999999999885 4579999999999999999999999973
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHH--hHHHHHHcCCCeeEeCCCC---------HHHHHHHHHhhCCCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQA--TYEECLRSGMDGYVSKPFE---------AEQLYREVSRFFPPIP 872 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~--~~~~~~~aG~d~yl~KP~~---------~~~L~~~l~~~~~~~~ 872 (876)
. .+|||++|+..... ...+++++|+++||.||++ .++|.+++++.+....
T Consensus 97 ---------------~-~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~~ 157 (164)
T 3t8y_A 97 ---------------A-PTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVDP 157 (164)
T ss_dssp ---------------S-CCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSCC
T ss_pred ---------------C-CceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCCc
Confidence 2 27999999977654 6678999999999999999 7899999999987654
No 124
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.64 E-value=1.8e-15 Score=143.63 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=106.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 727 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 727 ~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. .+.||+|| ||+++|++++++||+.
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----~~~~~g~~~~~~l~~~------- 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEK------- 83 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HSCCSEEE----ECSTTHHHHHHHHHHH-------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH-cCCCCEEE----EcCccHHHHHHHHHhc-------
Confidence 34679999999999999999999999999999999999999885 46799999 9999999999999973
Q ss_pred ccccccchhhhccCCCC-CCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHhhCCCC
Q 002821 807 IRRGEVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 871 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~-~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~~~ 871 (876)
+ ++|||++|+....+...+++++|+++|+.||+ +.++|..+|.+.+...
T Consensus 84 ----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 84 ----------------HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp ----------------STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred ----------------CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 3 58999999999999999999999999999999 9999999999987653
No 125
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.64 E-value=8.8e-16 Score=158.57 Aligned_cols=113 Identities=27% Similarity=0.452 Sum_probs=105.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+..+|+..| .|..+.++.+|++.+ ..||+||+|+.||++||++++++||+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~----------- 68 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMIKET----------- 68 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHHHHH-----------
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999 999999999999976 569999999999999999999999974
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+..+.+...+++++|+++|+.||++.++|..+|.+.+.
T Consensus 69 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 69 -----------RPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp -----------CTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -----------CCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 246899999999999999999999999999999999999999987654
No 126
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.64 E-value=1.4e-15 Score=145.33 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=100.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHc-CCEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
..+||||||++..+..+...|+.. |+.+ ..+.++.+|++.+. .+.||+||+|+.||+++|++++++||+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~------- 80 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ-HNKVDAIFLDINIPSLDGVLLAQNISQF------- 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HCCCSEEEECSSCSSSCHHHHHHHHTTS-------
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHcc-------
Confidence 358999999999999999999986 8884 58999999999885 4679999999999999999999999963
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+|||++|+.. +...+++++|+++|+.||++.++|..+|.+++
T Consensus 81 ---------------~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 81 ---------------AHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLT 125 (143)
T ss_dssp ---------------TTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------CCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHH
Confidence 2357899999873 46788999999999999999999999998764
No 127
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.64 E-value=4.3e-16 Score=173.41 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=105.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHh-HcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLK-RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~-~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++..+..++.+|. ..|+.|..+.+|.+|++.+. ...||+||+|+.||+|||++++++||+..
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~G~~~~~~l~~~~-------- 89 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-QIKPTVILQDLVMPGVDGLTLLAAYRGNP-------- 89 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHTTST--------
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 479999999999999999996 46999999999999999885 45799999999999999999999999631
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
..+++|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.
T Consensus 90 ------------~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 90 ------------ATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp ------------TTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred ------------ccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 13479999999999999999999999999999999999999888754
No 128
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.63 E-value=9.2e-16 Score=145.84 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=102.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhccccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 806 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~-~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~ 806 (876)
.+.+||||||++..+..++.+|+..|+.|..+.++.+|++.+. . ..||+||+|+.||+++|++++++||+.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~~dlvilD~~l~~~~g~~~~~~l~~~------- 85 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS-QLSTCDLLIVSDQLVDLSIFSLLDIVKEQ------- 85 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG-GGGSCSEEEEETTCTTSCHHHHHHHHTTS-------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhh-------
Confidence 4579999999999999999999999999999999999999885 4 579999999999999999999999962
Q ss_pred ccccccchhhhccCCCCCCcEEEEc-CCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCCC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMT-ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 871 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalT-a~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~~ 871 (876)
.+++|||++| +....+. .+++ +++|+.||++.++|..+|.+.+...
T Consensus 86 ---------------~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 86 ---------------TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp ---------------SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred ---------------CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 3468999999 8877766 6666 9999999999999999999987653
No 129
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.62 E-value=5.1e-16 Score=157.41 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=101.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+.+||||||++..+..+..+|...||.|..+.++.+|+ ...||+||+|+.||+|||+ +++.+|..
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al-----~~~~dlvl~D~~mp~~~g~-l~~~~~~~-------- 76 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-----DVPVDVVFTSIFQNRHHDE-IAALLAAG-------- 76 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC-----SSCCSEEEEECCSSTHHHH-HHHHHHHS--------
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC-----CCCCCEEEEeCCCCccchH-HHHHHhcc--------
Confidence 346899999999999999999999999999999988765 2469999999999999999 88888862
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+++|||++|+..+.+...+|+++|+++||.||++.++|..+|.+.+
T Consensus 77 --------------~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 77 --------------TPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp --------------CTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred --------------CCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 14789999999999999999999999999999999999999887643
No 130
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=2.8e-16 Score=178.00 Aligned_cols=118 Identities=22% Similarity=0.311 Sum_probs=103.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhH-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~-~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
.+||||||++.++..++.+|++ .|+.|.++.||.+|++.+.....||+||+|++||+|||++++++||+..
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~-------- 75 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSG-------- 75 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHT--------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 4899999999999999999998 5789999999999999885324799999999999999999999999742
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCH-----HhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQ-----ATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~-----~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
+.+|||++|+.... ....+|+++|+++||.||++.++|..+|.+.+.
T Consensus 76 --------------~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~ 127 (400)
T 3sy8_A 76 --------------KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNA 127 (400)
T ss_dssp --------------CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --------------CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHH
Confidence 35678888877766 567789999999999999999999999988653
No 131
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.62 E-value=2.1e-16 Score=164.26 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=105.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcC-CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g-~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||+|||++++++||+.
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 72 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-AARPDVAVLDVRLPDGNGIELCRDLLSR--------- 72 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSEETTEEHHHHHHHHHHH---------
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHHh---------
Confidence 79999999999999999999887 885 47999999999885 4579999999999999999999999973
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.+.+|||++|+..+.+...+++++|+++||.||++.++|..+|.+.+
T Consensus 73 -------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 119 (225)
T 3c3w_A 73 -------------MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVG 119 (225)
T ss_dssp -------------CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999998754
No 132
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.62 E-value=4.8e-17 Score=151.07 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=107.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 809 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 809 (876)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 72 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-SCCCSCEEECSCSSHHHHCSTHHHHHHH----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEeeecCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999873
Q ss_pred cccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 810 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 810 g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
.+++|||++|+....+...+++++|+++|+.||++.++|...|.+.+.
T Consensus 73 ------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp ------------CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 246899999999988888999999999999999999999999987653
No 133
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.60 E-value=1.3e-15 Score=162.06 Aligned_cols=103 Identities=22% Similarity=0.343 Sum_probs=88.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhH-cCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~-~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
++||||||++..+..+...|.. .|+.+. +.++.+|+..+. ...||+||+|++||+|||++++++||+.
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~-~~~~dlvllD~~mP~~~G~~~~~~lr~~--------- 73 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQ-GDEYVVALVDLTLPDAPSGEAVKVLLER--------- 73 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCC-TTTEEEEEEESCBTTBTTSHHHHHHHHT---------
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhh-cCCCcEEEEeCCCCCCCHHHHHHHHHhC---------
Confidence 5899999999999999999976 477775 455666666554 4679999999999999999999999962
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHH
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE 858 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~ 858 (876)
.+|||++|+..+.+...+|+++|++||+.||+...
T Consensus 74 ---------------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 74 ---------------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp ---------------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred ---------------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 47999999999999999999999999999997543
No 134
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.59 E-value=9.1e-15 Score=151.23 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccccccccc
Q 002821 731 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 731 ~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g 810 (876)
+||||||++..+..+..+|+..|+.|..+.++.+|++.+. .+.||+|| ||+|||+++++.||+. +
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----lp~~~g~~~~~~lr~~-~--------- 66 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEK-H--------- 66 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-TSCCSEEE----ECCTTHHHHHHHHHHH-C---------
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-cCCCCEEE----eCCCCHHHHHHHHHhC-C---------
Confidence 6999999999999999999999999999999999999985 46799999 9999999999999973 1
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC-CHHHHHHHHHhhCCCC
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVSRFFPPI 871 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~-~~~~L~~~l~~~~~~~ 871 (876)
.++|||++|+..+.+...+++++|+++|+.||+ +.++|..+|.+.+...
T Consensus 67 ------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 67 ------------SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ------------TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ------------CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 268999999999999999999999999999999 9999999999887654
No 135
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.52 E-value=3.8e-14 Score=156.96 Aligned_cols=115 Identities=19% Similarity=0.279 Sum_probs=100.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc-CCE-EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
.+||||||++..+..++.+|+.. |+. |..+.++.+|++.+. ...||+|++|+.||+|||++++++||+.
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-~~~pDlVllDi~mp~~dGlell~~l~~~-------- 74 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-KFNPDVLTLDVEMPRMDGLDFLEKLMRL-------- 74 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEECCCSSSCHHHHHHHHHHS--------
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHhc--------
Confidence 48999999999999999999986 888 569999999999885 4579999999999999999999999973
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCH--HhHHHHHHcCCCeeEeCCCCH---------HHHHHHHHhhC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQ--ATYEECLRSGMDGYVSKPFEA---------EQLYREVSRFF 868 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~--~~~~~~~~aG~d~yl~KP~~~---------~~L~~~l~~~~ 868 (876)
. .+|||++|+.... +...+++++|++|||.||++. ++|...|++..
T Consensus 75 --------------~-p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~ 131 (349)
T 1a2o_A 75 --------------R-PMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAA 131 (349)
T ss_dssp --------------S-CCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHH
T ss_pred --------------C-CCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHH
Confidence 2 3899999998775 458899999999999999983 78888876543
No 136
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.49 E-value=2.9e-14 Score=173.31 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=102.8
Q ss_pred eEEEEeCCH-HH-------HHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC----CCHHHHHHHHHh
Q 002821 731 KILIVDDNN-VN-------LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE----MDGFEATKIIRE 798 (876)
Q Consensus 731 ~ILvVdDn~-~n-------~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~----mdG~e~~~~IR~ 798 (876)
+||||||++ .. ++.++..|++.||+|..+.||++|+..+.....||+|++|++||+ |||++++++||+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~ 81 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHH
Confidence 799999999 88 999999999999999999999999999964445999999999999 999999999998
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEcCCCC-HHhHHHHHHcCCCeeEeCCCCHHH-HHHHHHh
Q 002821 799 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI-QATYEECLRSGMDGYVSKPFEAEQ-LYREVSR 866 (876)
Q Consensus 799 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~-~~~~~~~~~aG~d~yl~KP~~~~~-L~~~l~~ 866 (876)
. ...+|||++|+... .+++...+..|+|||+.||++..+ |...|..
T Consensus 82 ~----------------------~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a 129 (755)
T 2vyc_A 82 R----------------------QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVA 129 (755)
T ss_dssp H----------------------STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHH
T ss_pred h----------------------CCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHH
Confidence 4 23699999999888 888999999999999999999999 6555553
No 137
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.46 E-value=8.4e-14 Score=162.83 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=87.9
Q ss_pred EeecHHHHHHHHHHHHHHHhhccCC-C---eEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCC
Q 002821 389 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 464 (876)
Q Consensus 389 v~~D~~rl~qIl~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (876)
+.+|+.+|.||+.|||+||++|+.. | .|.|.+....
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~---------------------------------------- 70 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTG---------------------------------------- 70 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET----------------------------------------
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC----------------------------------------
Confidence 5689999999999999999999974 5 5655543210
Q ss_pred CCCCCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCC--CCCCCCCcccccHHHHHHHHHHcCCE-EEEEEeC
Q 002821 465 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP--SISRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 541 (876)
Q Consensus 465 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~--s~~~~~~GtGLGLsI~k~lv~~mgG~-I~v~S~~ 541 (876)
...+.|+|+|+|+|||++.++++|++|+..+. ......+|+|+||++|+.+++.|||+ |.++|..
T Consensus 71 ------------~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~ 138 (621)
T 2q2e_B 71 ------------PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKT 138 (621)
T ss_dssp ------------TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred ------------CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeec
Confidence 02467999999999999999999988754332 11234589999999999999999999 8999988
Q ss_pred CC---cEEEEEEEEeCC
Q 002821 542 NI---GSTFTFTAVFGN 555 (876)
Q Consensus 542 g~---GstF~~~lp~~~ 555 (876)
+. |++|+|.+|...
T Consensus 139 ~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 139 SPTAPAHYYELMINTST 155 (621)
T ss_dssp SSSSCEEEEECCCCSSS
T ss_pred cCCccceEEEEecchhc
Confidence 74 566666555543
No 138
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.90 E-value=4.3e-10 Score=116.66 Aligned_cols=93 Identities=27% Similarity=0.371 Sum_probs=75.6
Q ss_pred CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCC
Q 002821 754 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 833 (876)
Q Consensus 754 ~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~ 833 (876)
+.|..+.++.+|++.+. .+.||+||+|++||+|||++++++||+.. +..||++++..
T Consensus 6 ~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~~p~~~g~~~~~~l~~~~----------------------~~~~i~vi~~~ 62 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKID----------------------PNAKIIVCSAM 62 (237)
T ss_dssp EEEECCCSSSTTHHHHH-HHCCSCEEEECCSTTSSHHHHHHHHHHHS----------------------SSCCEEEECCS
T ss_pred EEEEECCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHhC----------------------CCCCEEEEECC
Confidence 34455889999999885 45799999999999999999999999742 13455555665
Q ss_pred CCHHhHHHHHHcCCCeeEeCC--CCHHHHHHHHHhhCC
Q 002821 834 VIQATYEECLRSGMDGYVSKP--FEAEQLYREVSRFFP 869 (876)
Q Consensus 834 ~~~~~~~~~~~aG~d~yl~KP--~~~~~L~~~l~~~~~ 869 (876)
...+...+++++|+++|+.|| ++..+|...+.+.+.
T Consensus 63 ~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 63 GQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp STHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 668899999999999999999 888888888877654
No 139
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.51 E-value=5.9e-08 Score=108.29 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=65.4
Q ss_pred eecHHHHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCC
Q 002821 390 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 469 (876)
Q Consensus 390 ~~D~~rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (876)
.+|...+.+++.|+++||+++ ..+.|.|.+..
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~----------------------------------------------- 62 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE----------------------------------------------- 62 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT-----------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc-----------------------------------------------
Confidence 478899999999999999995 35667666520
Q ss_pred CCCCCcCceeEEEEEEeeCCCCChhhHhh--------hcccccccCC----CCCCCCCcccccHHHHHHHHHHcC
Q 002821 470 FKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVGP----SISRTHGGTGIGLSISKYLVGRMK 532 (876)
Q Consensus 470 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------iF~pF~q~~~----s~~~~~~GtGLGLsI~k~lv~~mg 532 (876)
+ -.|+|+|+|+|||++.+++ +|.+|+..+. ......|+.|+||++|+.+++.+.
T Consensus 63 ------~---~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 63 ------D---GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp ------T---SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred ------C---CEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 0 0489999999999999888 9998876532 111234679999999999997653
No 140
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.42 E-value=4.8e-07 Score=99.06 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002821 395 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 474 (876)
Q Consensus 395 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (876)
++.+++.|||+||+++. ...|.|.+.. .
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~------------------------------------------------- 51 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--G------------------------------------------------- 51 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--C-------------------------------------------------
Confidence 67899999999999998 4566665531 0
Q ss_pred cCceeEEEEEEeeCCCCChhhHhhhcccccccCCCC------CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCC
Q 002821 475 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 543 (876)
Q Consensus 475 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~------~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~ 543 (876)
....|+|.|+|+||+++++..+|++|++.+... ....|+.|+||+.+..+ +++.+.|....
T Consensus 52 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 52 ---GAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp ---GTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred ---CceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 012589999999999999999999998754211 12457799999987544 37889888643
No 141
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.36 E-value=1.8e-06 Score=77.89 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 266 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 338 (876)
Q Consensus 266 ~~~~~~~ae~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~ 338 (876)
+..+..+.+.....+.+|++++|||+||||++|.++++++.+ ...++++.+..++++|..++++++++
T Consensus 46 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 46 IERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555556677889999999999999999999998753 23445689999999999999999987
No 142
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.33 E-value=1e-06 Score=97.47 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002821 395 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 474 (876)
Q Consensus 395 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (876)
++.+++.|||+||+++. .+.|.|.+.. .
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~--~------------------------------------------------- 61 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKD--Y------------------------------------------------- 61 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEG--G-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEe--C-------------------------------------------------
Confidence 57899999999999986 4566665521 0
Q ss_pred cCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC-----CCCCcc-cccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 475 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-----RTHGGT-GIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 475 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~-----~~~~Gt-GLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
....|+|.|+|+||++++++++|++|++.+.... ....|. |+||+.+..+ . .+.+.|...
T Consensus 62 ---~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~ 127 (365)
T 1h7s_A 62 ---GVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHA 127 (365)
T ss_dssp ---GTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECT
T ss_pred ---CcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccC
Confidence 0125899999999999999999999997643211 011244 9999876654 3 788888764
No 143
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.28 E-value=2e-06 Score=93.93 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002821 395 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 474 (876)
Q Consensus 395 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (876)
++.+++.|||.||+++. .+.|.|.+. +.
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~------------------------------------------------- 55 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EG------------------------------------------------- 55 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GG-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57899999999999995 456666652 10
Q ss_pred cCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC------CCCCcccccHHHHHHHHHHcCCEEEEEEeCCC
Q 002821 475 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 543 (876)
Q Consensus 475 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~------~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~ 543 (876)
....|+|.|+|+|||+++++++|+||++.+.... ...|--|.||+-...+. ++.+.|....
T Consensus 56 ---~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~ 122 (348)
T 3na3_A 56 ---GLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTAD 122 (348)
T ss_dssp ---GTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECTT
T ss_pred ---CEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECC
Confidence 0125899999999999999999999998754321 22344588887555442 6899887643
No 144
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.21 E-value=1.3e-06 Score=98.39 Aligned_cols=90 Identities=24% Similarity=0.239 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHHHhhcc----CCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCC
Q 002821 392 DPGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 467 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (876)
+...+..++.+|+.||++|+ +.|.|.|++....
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~------------------------------------------- 330 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG------------------------------------------- 330 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-------------------------------------------
Confidence 35679999999999999998 3678888775321
Q ss_pred CCCCCCCcCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCcEEE
Q 002821 468 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 547 (876)
Q Consensus 468 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~GstF 547 (876)
...+.|+|.|+|+|+|+. + ..++.|+||.|++.|++.+ .+.+. +.|+++
T Consensus 331 ---------~~~l~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~----~~~~~-~~G~~v 379 (399)
T 3ke6_A 331 ---------DGNVRASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEA----RIMHG-AGGTTA 379 (399)
T ss_dssp ---------TSEEEEEEEESCBC-----------------------------CHHHHHTTSSEE----EEEEE-TTEEEE
T ss_pred ---------CCEEEEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhe----eeEEC-CCcEEE
Confidence 124789999999999875 0 1246799999999988754 45544 579999
Q ss_pred EEEEEeCC
Q 002821 548 TFTAVFGN 555 (876)
Q Consensus 548 ~~~lp~~~ 555 (876)
++.+++..
T Consensus 380 ~~~~~~~~ 387 (399)
T 3ke6_A 380 TLTHRLSR 387 (399)
T ss_dssp EEEEECEE
T ss_pred EEEEEcCC
Confidence 99998753
No 145
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=98.04 E-value=1.7e-05 Score=74.75 Aligned_cols=120 Identities=15% Similarity=0.269 Sum_probs=87.6
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
+++|+|+|||++..+.+.+..|+.+|+. +..++++.+|+..+... .++++++|..+...+ ...++..+++....
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~md---G~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQ---GIDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCC---HHHHHHHHHhCCCC
Confidence 4579999999999999999999999996 78899999999987763 589999998775544 34566677765544
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
...++++++........... ...|...++.||++...|...+.+.+
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~-~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEA-AQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 44444444433222211111 12367789999999999999988765
No 146
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.1e-05 Score=88.94 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEEEeeccccchhhhhhhccccCcCCCCCccccccccCccccccCCCCCCCCCCCC
Q 002821 395 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 474 (876)
Q Consensus 395 rl~qIl~NLl~NAiKfT~~G~I~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (876)
++.+++.|||.||+++. ...|.|.+. +.
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~------------------------------------------------- 52 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DY------------------------------------------------- 52 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TT-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57899999999999986 456666542 10
Q ss_pred cCceeEEEEEEeeCCCCChhhHhhhcccccccCCCCC------CCCCcccccHHHHHHHHHHcCCEEEEEEeCC--CcEE
Q 002821 475 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN--IGST 546 (876)
Q Consensus 475 ~~~~~l~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~~------~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g--~Gst 546 (876)
....|+|.|+|+||+++.+..+|+||+..+.... ...|--|.||+-+..+ . ++.+.|... .|..
T Consensus 53 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av----S-~l~V~sr~~~~~~~~ 124 (367)
T 3h4l_A 53 ---GLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI----A-KLSVITTTSPPKADK 124 (367)
T ss_dssp ---TTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS----S-EEEEEEESSTTCEEE
T ss_pred ---CEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc----C-EEEEEEEECCCCEEE
Confidence 0135999999999999999999999997643321 1112236777655444 2 789988764 3444
Q ss_pred EEE
Q 002821 547 FTF 549 (876)
Q Consensus 547 F~~ 549 (876)
..+
T Consensus 125 ~~~ 127 (367)
T 3h4l_A 125 LEY 127 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 147
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.69 E-value=8.8e-05 Score=66.50 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002821 274 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 339 (876)
Q Consensus 274 e~a~~aks~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~L~~lindlLd~s 339 (876)
+.....+.+|++.+|||||||++.|.+.++.+... ..++.+.+...+.+|..+++++++++
T Consensus 54 ~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 54 KQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344577899999999999999999999977542 25677889999999999999998875
No 148
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.67 E-value=0.00026 Score=70.82 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=29.4
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 002821 282 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 327 (876)
Q Consensus 282 ~fla~iSHElRTPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~ 327 (876)
+-+....||..+=|+.|.|++++= .-++-.+|+..+....+.
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~ 64 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKH 64 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH
Confidence 457778999999999999999862 223455666555544433
No 149
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=97.64 E-value=1.7e-05 Score=81.61 Aligned_cols=206 Identities=11% Similarity=0.108 Sum_probs=117.8
Q ss_pred EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEecccCccccCCCCCCCCCCce
Q 002821 608 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 687 (876)
Q Consensus 608 v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 687 (876)
|..+.+..+++..+... .++++++|..+...+ ...++..++...... +.+++..... ....... ...+...+
T Consensus 8 v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~---g~~~~~~l~~~~~~~-~i~vi~~~~~-~~~~~~~-~~~Ga~~~ 79 (237)
T 3cwo_X 8 VDDATNGREAVEKYKEL--KPDIVTMDITMPEMN---GIDAIKEIMKIDPNA-KIIVCSAMGQ-QAMVIEA-IKAGAKDF 79 (237)
T ss_dssp EECCCSSSTTHHHHHHH--CCSCEEEECCSTTSS---HHHHHHHHHHHSSSC-CEEEECCSST-HHHHHHH-HHTTCCEE
T ss_pred EEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHHhCCCC-CEEEEECCCC-HHHHHHH-HHCCHHhe
Confidence 44456666666665543 357888887765433 234455555443221 2223322221 1111111 11245678
Q ss_pred eccC--CchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHH
Q 002821 688 IMKP--LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 765 (876)
Q Consensus 688 ~~kp--~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA 765 (876)
+.|| +....+...+.+.++.. ..++.+|+...+.. ..+...+.......+..+.
T Consensus 80 l~kp~~~~~~~l~~~i~~~~~~~---------------------~~~~~~d~~~~~~~---~~v~~~~g~~~~~~~~~~~ 135 (237)
T 3cwo_X 80 IVNTAAVENPSLITQIAQTFGSQ---------------------AVVVAIDAKRVDGE---FMVFTYSGKKNTGILLRDW 135 (237)
T ss_dssp EESHHHHHCTHHHHHHHHHHTGG---------------------GEEEEEEEEESSSC---EEEEETTTTEEEEEEHHHH
T ss_pred EeCCcccChHHHHHHHHHHhCCC---------------------ceEEEeeecccCCc---EEEEEeCCccccccCHHHH
Confidence 8888 67667777666655311 12444444321000 0000011112222344555
Q ss_pred HHHhCCCCCccEEEEeC-CCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHH
Q 002821 766 TELLMPPHQFDACFMDI-QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 844 (876)
Q Consensus 766 ~~~~~~~~~~DlilmDi-~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~ 844 (876)
++.+......+++++++ .++.|+|++ ++.|++... ..++|||++++....++..+|++
T Consensus 136 i~~~~~~~~~~vli~~~~~~g~~~g~~-~~~i~~~~~--------------------~~~~Pvia~~g~~~~~~~~~~~~ 194 (237)
T 3cwo_X 136 VVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRP--------------------LTTLPIIASGGAGKMEHFLEAFL 194 (237)
T ss_dssp HHHHHHHTCSEEEEEETTTTTCCSCCC-HHHHHHHGG--------------------GCCSCEEEESCCCSHHHHHHHHH
T ss_pred HHHHhhcCCCeEEEEecCCCCcccccc-HHHHHHHHH--------------------hcCCCEEecCCCCCHHHHHHHHH
Confidence 55543333456999997 888899976 556655321 23689999999999999999999
Q ss_pred cCCCeeE------eCCCCHHHHHHHHHh
Q 002821 845 SGMDGYV------SKPFEAEQLYREVSR 866 (876)
Q Consensus 845 aG~d~yl------~KP~~~~~L~~~l~~ 866 (876)
+|||+++ .+|++..++.+.+.+
T Consensus 195 ~G~~~~~vg~a~~~~~~~~~~~~~~l~~ 222 (237)
T 3cwo_X 195 AGADAALAASVFHFREIDVRELKEYLKK 222 (237)
T ss_dssp HTCSEEEESHHHHTTSSCHHHHHHHHHT
T ss_pred cCcHHHhhhHHHHcCCCCHHHHHHHHHH
Confidence 9999984 899999999888765
No 150
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.60 E-value=5.5e-05 Score=77.66 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=38.2
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCC----------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~----------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|||+||+++++...|..+.+... ......|..|+|+.-+.. .+-++.|.|...
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~~ 141 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKSN 141 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEecC
Confidence 5899999999999999888866543210 111233557999865533 345677777654
No 151
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=97.52 E-value=0.0003 Score=67.38 Aligned_cols=120 Identities=11% Similarity=0.140 Sum_probs=85.0
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
...+++++|+++..+......|+..|+.+. .+.+..+++..+......++++++|..+...+ ...++..+++..
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~---g~~~~~~lr~~~-- 109 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMD---GITCLSNIMEFD-- 109 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSC---HHHHHHHHHHHC--
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCcc---HHHHHHHHHhhC--
Confidence 346899999999999999999999999998 89999999998876544689999998765432 234555666543
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
...++++++........... ...+...++.||+....+...+.+++
T Consensus 110 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKDC-LIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp TTCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCCcEEEEeccCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 22345555443322211111 12256679999999999999888765
No 152
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.44 E-value=0.00032 Score=73.53 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=72.4
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccc
Q 002821 726 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 726 ~~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~ 805 (876)
.+.+++|||||||+.++..+...|...|++|..+.+ .....||++++|..||..++.+
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~--------~~~~~~~~ii~d~~~~~~~~~~-------------- 65 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG--------QEPTPEDVLITDEVVSKKWQGR-------------- 65 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS--------CCCCTTCEEEEESSCSCCCCSS--------------
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC--------CCCCcCcEEEEcCCCccccccc--------------
Confidence 366889999999999999999999999999988875 1235799999999999764421
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
.++.++....... ...+...++.||+...+|...+.+.+
T Consensus 66 --------------------~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 66 --------------------AVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp --------------------EEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred --------------------eEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHh
Confidence 1344444322110 12345689999999999999888765
No 153
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=97.33 E-value=0.00098 Score=69.32 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=84.5
Q ss_pred cEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhc
Q 002821 544 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 623 (876)
Q Consensus 544 GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~ 623 (876)
||+|++.+|+....... .......+++++|+++..+......|+..|+.+..+.+..+++..+..
T Consensus 1 Gs~~~~~~~~~~~~~~~---------------~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPG---------------ENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE 65 (250)
T ss_dssp ----------------------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCccccccceeeccCCC---------------CCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh
Confidence 89999999875432211 111235799999999999999999999999999999999999988765
Q ss_pred CCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 002821 624 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 703 (876)
Q Consensus 624 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 703 (876)
. .++++++|..+...+ ...++..+++... ..++++++........... -..+...++.||+....+...+..
T Consensus 66 ~--~~dlvllD~~lp~~~---g~~~~~~lr~~~~--~~~ii~lt~~~~~~~~~~~-~~~Ga~~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 66 T--RPDAVILDVXMPGMD---GFGVLRRLRADGI--DAPALFLTARDSLQDKIAG-LTLGGDDYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp H--CCSEEEEESCCSSSC---HHHHHHHHHHTTC--CCCEEEEECSTTHHHHHHH-HTSTTCEEEESSCCHHHHHHHHHH
T ss_pred C--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC--CCCEEEEECCCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHH
Confidence 3 478999997765432 3345566665422 2334444333222111111 123567899999999999999888
Q ss_pred Hhc
Q 002821 704 AMG 706 (876)
Q Consensus 704 ~l~ 706 (876)
.+.
T Consensus 138 ~~~ 140 (250)
T 3r0j_A 138 ILR 140 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 154
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.28 E-value=0.0021 Score=58.49 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=83.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|..+...+ ...+...+++.......
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~---g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMD---GFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSC---HHHHHHHHHTSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCc---HHHHHHHHHhcccccCC
Confidence 579999999999999999999999999999999999998864 4578999987765433 33455666654433334
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
++++++........... ...+...++.||+....+...+++.+
T Consensus 78 pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLA-LSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp CEEEEESCCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHh
Confidence 45554443222111111 12256689999999999999888765
No 155
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.24 E-value=5.4e-05 Score=79.67 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=37.2
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCC---------------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGP---------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~---------------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|||+||+++.+...|..+.+.+. ......|..|+|+.-+..++ ..+.|.|...
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~~ 148 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 148 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEec
Confidence 5899999999999998766644322100 01112356899998665443 5777777664
No 156
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.22 E-value=0.0004 Score=72.90 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.9
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCC----------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~----------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|||+||+++++...|..+.+... ......|..|+|+.-|..+ .-++.|.|...
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr~~ 183 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 183 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEecC
Confidence 4899999999999998777765543211 1112345679999866543 45677877754
No 157
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.17 E-value=0.003 Score=58.36 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=82.7
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhc-CC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-GC 657 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~ 657 (876)
+.+.+++++|+++..+......|+.+|+.+..+.+..+++..+... . +++++|..+...+. ..+...+++. ..
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~-dlvllD~~lp~~~g---~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--H-KVVFMDVCMPGVEN---YQIALRIHEKFTK 78 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT--C-SEEEEECCSSTTTT---THHHHHHHHHHC-
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc--C-CEEEEeCCCCCCcH---HHHHHHHHHhhhh
Confidence 4578999999999999999999999999999999999999877543 3 89999987654332 2334445422 11
Q ss_pred C--CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 G--FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
. ..+.+++++........... ...+...++.||+....+...+++.+.
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKC-MSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred ccCCCceEEEEeCCCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 1 12344445443332211111 112566899999999999999988774
No 158
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=97.12 E-value=0.004 Score=57.79 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=86.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQD---GVSLIRALRRDSRTRD 80 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHTSGGGTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCcccCC
Confidence 46899999999999999999999999999999999999988664 478899987764432 3345566665333333
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++...............+...++.||+....+...+.+++.
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4555554433222211022233667899999999999999988875
No 159
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=97.10 E-value=0.0037 Score=56.92 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=84.7
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTS---GLALVKQLRALPMEKT 77 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHSCCSSC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhhccCC
Confidence 36899999999999999999999999999999999999988764 378999998765432 3445666666543334
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++....... . .....+...++.||+....+.+.+....+
T Consensus 78 ~~ii~~s~~~~~~~-~-~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 78 SKFVAVSGFAKNDL-G-KEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CEEEEEECC-CTTC-C-HHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCEEEEECCcchhH-H-HHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 45555544333222 1 11112355799999999999999987654
No 160
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.09 E-value=0.00013 Score=75.63 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=38.9
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCCC------------CCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s------------~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|+|+||+++++...|..+.+.... .....|..|+||.-+.. .+-++.|.|...
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~~ 164 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRAA 164 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEecC
Confidence 48999999999999999888766543210 01123568999974432 345677777654
No 161
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=97.09 E-value=0.00077 Score=62.35 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=78.8
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
+.+|+|+|||++..+......|+.+|+.|. .+++..+|+..+... .++++++|..+...++ ......+++..
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~--~~DlvllDi~mP~~~G---~el~~~lr~~~-- 79 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG--QFDIAIIDVNLDGEPS---YPVADILAERN-- 79 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC--CSSEEEECSSSSSCCS---HHHHHHHHHTC--
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCH---HHHHHHHHcCC--
Confidence 457899999999999999999999999974 789999999988764 5899999988866543 33445555421
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 704 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 704 (876)
.|.+ +.++.+... .. ...+...++.||++...|...+.+.
T Consensus 80 -ipvI--~lTa~~~~~-~~--~~~g~~~yl~KP~~~~~L~~~l~~~ 119 (123)
T 2lpm_A 80 -VPFI--FATGYGSKG-LD--TRYSNIPLLTKPFLDSELEAVLVQI 119 (123)
T ss_dssp -CSSC--CBCTTCTTS-CC--SSSCSCSCBCSSSSHHHHHHHHSTT
T ss_pred -CCEE--EEecCccHH-HH--HhCCCCcEEECCCCHHHHHHHHHHH
Confidence 1222 223222211 11 1223446899999999998887643
No 162
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=97.08 E-value=0.0089 Score=55.43 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=85.6
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++.....
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMD---GWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSC---HHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 457899999999999999999999999999999999999988764 378899987664322 234556666533333
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++........... ...+...++.||+....+...+...+.
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKMIG-LQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TEEEEEEECTTCCCCSSTT-GGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3445555443332221111 122455789999999999999888764
No 163
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.02 E-value=0.00069 Score=75.27 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=37.0
Q ss_pred EEEEEeeCCCCChhh--------HhhhcccccccC---CCCCCCCCc-ccccHHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEA--------QSRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 530 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~ 530 (876)
.|+|.|+|.|||.+. .+.+|..|+... ....+..+| .|.||+.+..+.+.
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~ 125 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR 125 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhcc
Confidence 389999999999998 678898876542 111223445 89999999988753
No 164
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=96.99 E-value=0.0035 Score=57.44 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=83.5
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
.+++++++|+++..+...+..|+..|+. +..+.+..+++..+... ..++++++|..+...+ ...+...+++....
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~---g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMN---GLDLVKKVRSDSRF 79 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSC---HHHHHHHHHTSTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhcCCC
Confidence 4578999999999999999999999995 88899999998877543 3468888887764432 33455666654333
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++++........... ...+...++.||+....+...++..++
T Consensus 80 ~~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITA-LKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHH-HHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCChHHHHHH-HHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 33445555443322111111 122566799999999999999988875
No 165
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=96.95 E-value=0.0043 Score=58.91 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=86.5
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
+..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.....
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~ 80 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMD---GYALCRWLKGQPDLR 80 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCCCcC
Confidence 357899999999999999999999999999999999999988653 578999998765433 334556666644333
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
..++++++........... ...+...++.||+....+...+...+..
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRS-LECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TSCEEEEECCCSHHHHHHH-HHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 3445554433322111111 1125567999999999999999988753
No 166
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=96.95 E-value=0.015 Score=53.08 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=84.2
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......++ .|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++......
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMD---GYALCGHFRSEPTLKH 77 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHSTTTTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhCCccCC
Confidence 3689999999999999999998 999999999999999988764 478899987764322 3445666666543334
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.++++++....... ......+...++.||+....+...+.+.+..
T Consensus 78 ~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPRTE--GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHhH--HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 44555544333222 2222335668999999999999999988753
No 167
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=96.95 E-value=0.012 Score=54.68 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=83.2
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+.+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|..+... .....++..+++. .
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~--~~g~~~~~~l~~~---~ 77 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEG--MDGVQTALAIQQI---S 77 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSS--CCHHHHHHHHHHH---C
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCC--CCHHHHHHHHHhC---C
Confidence 457899999999999999999999999999999999999888653 457899998776421 1223345555553 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++........... ...+...++.||+....+...+..++.
T Consensus 78 ~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKI-RSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCCEEEEESSSSCCCCGGG-GGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3344555443332221111 122556899999999999999887764
No 168
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=96.89 E-value=0.005 Score=57.15 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=84.7
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++......
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~lr~~~~~~~ 78 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGID---GYTLCKRVRQHPLTKT 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSGGGTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHcCCCcCC
Confidence 46899999999999999999999999999999999999887654 478899987765433 3345556665432223
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.++++++........... -..+...++.||+....+...+.+.+..
T Consensus 79 ~pii~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 79 LPILMLTAQGDISAKIAG-FEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp CCEEEEECTTCHHHHHHH-HHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ccEEEEecCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 344444433222111111 1124567999999999999999888753
No 169
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.88 E-value=0.0053 Score=56.53 Aligned_cols=122 Identities=14% Similarity=0.155 Sum_probs=86.2
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC-----CCcceEEEeeccccccCcchhHHHHHHHh
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 653 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 653 (876)
+++++++|+++..+......|+..|. .+..+.+..+++..+... ...++++++|..+...+ ...++..++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~---g~~~~~~l~ 78 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKD---GREVLAEIK 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSC---HHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCccc---HHHHHHHHH
Confidence 57899999999999999999999998 999999999999988763 25689999997764322 334556666
Q ss_pred hcCCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 654 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 654 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+.......++++++............ ..+...++.||+....+...+.+.+.
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIFHSY-DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHHHHH-HhchhheecCCCCHHHHHHHHHHHHH
Confidence 64322334455554433321111111 12566799999999999998887764
No 170
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=96.87 E-value=0.012 Score=62.74 Aligned_cols=116 Identities=14% Similarity=0.215 Sum_probs=85.3
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 658 (876)
+.+++++||++..+.+....|+.+|+.|. .+.++.+++..+... .++++++|..+. ..++.. ....++...
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e---~~~~ir~~~-- 232 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGID---AVKDILGRM-- 232 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTT---TTHHHHHHT--
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHH---HHHHHHhcC--
Confidence 46899999999999999999999999999 999999999998764 489999998887 444332 234444443
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
..++++++.. +. ..... ...|...++.||+....|...+...+..
T Consensus 233 -~~piI~lT~~-~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 233 -DVPVIFITAF-PE-RLLTG-ERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp -TCCEEEEESC-GG-GGCCS-SSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEeCC-HH-HHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 3334444332 22 11122 2336678999999999999999988854
No 171
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=96.86 E-value=0.0039 Score=57.91 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=86.2
Q ss_pred CcEEEEECCchhhHHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......|+. .|+.+..+.+..+++..+... ..++++++|..+. .. ....++..+++....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~---~g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEK---EGLEVLSAIRNNSRT 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHH---HHHHHHHHHHHSGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCC---cHHHHHHHHHhCccc
Confidence 46899999999999999999999 999999999999999887653 4578899987654 32 233455666663233
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
...++++++........... ...+...++.||+....+...+...+..
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAA-LKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHH-HHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 33445555443322111111 1225668999999999999999988854
No 172
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=96.82 E-value=0.0053 Score=57.56 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=80.1
Q ss_pred ccCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcC-
Q 002821 578 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG- 656 (876)
Q Consensus 578 ~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~- 656 (876)
..++++++++|+++..+......|+.+|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++...
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~---g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMN---GLDMLKQLRVMQA 85 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHHHHH
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhchh
Confidence 3567899999999999999999999999999999999999988765 3578999998765433 233445554321
Q ss_pred -CCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 657 -CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 657 -~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
......+++++........... ...+...++.||+....+...+.+..
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRAC-EQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred ccCCCCeEEEEeCCCCHHHHHHH-HHcChhheeeCCCCHHHHHHHHHHHH
Confidence 1122344444433222111111 11256689999999999999998765
No 173
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=96.80 E-value=0.013 Score=52.86 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=83.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.+++++|+++..+......|+..|+++..+.+..+++..+... .++++++|.... ..+ ...+...+++......
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~---g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQN---GYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCB---HHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCC---HHHHHHHHhcCccccC
Confidence 5899999999999999999999999999999999999887653 478888887654 222 2345566666532333
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+++++ ........... ...+...++.||+....+...+.+.+.
T Consensus 81 ~~ii~~-~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-GNPDGFAQHRK-LKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-ECGGGHHHHHH-STTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-ecCCchhHHHH-HHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 444444 33222111111 223566899999999999999988764
No 174
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=96.79 E-value=0.0074 Score=56.92 Aligned_cols=121 Identities=11% Similarity=0.183 Sum_probs=85.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCc--EEEEeCCHHHHHHHHhc-------CCCcceEEEeeccccccCcchhHHHHHH
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS-------GSKIINMILVEQEVWEKDTSVSTLFVNN 651 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 651 (876)
..+++++|+++..+......|+..|. .+..+.+..+++..+.. ....++++++|..+...+ ...++..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~---g~~~~~~ 80 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMT---GIDILKL 80 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSB---HHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCc---HHHHHHH
Confidence 46899999999999999999999999 89999999999998862 245789999998765432 3445666
Q ss_pred HhhcCCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 652 LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 652 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
+++.......+++++............. ..+...++.||+....+...+.+..
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCY-DLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 6664333344455554433322111111 2256689999999999999988765
No 175
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=96.77 E-value=0.0053 Score=57.14 Aligned_cols=124 Identities=11% Similarity=0.156 Sum_probs=87.5
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCc--EEEEeCCHHHHHHHHhc---CCCcceEEEeeccccccCcchhHHHHHHHhh
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRK 654 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 654 (876)
+..+++++|+++..+......|...|. .+..+.+..+++..+.. ....++++++|..+...+ ...++..+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~ 84 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGIN---GWELIDLFKQ 84 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSC---HHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---HHHHHHHHHH
Confidence 357899999999999999999999999 99999999999988765 225689999997765432 3345556665
Q ss_pred cC--CCCCceEEEEecccCccccCCCCCCCC-CCceeccCCchHHHHHHHHHHhcC
Q 002821 655 LG--CGFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 655 ~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.. ......++++............... + ...++.||+....+...+.+....
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEAS-DWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHC-SSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhc-CCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 32 2233445555443332222111122 4 667999999999999999988753
No 176
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=96.72 E-value=0.01 Score=53.62 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=81.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~---g~~~~~~lr~~~---~~ 74 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKD---GVEVCREVRKKY---DM 74 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTH---HHHHHHHHHTTC---CS
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC---CC
Confidence 5899999999999999999999999999999999999888654 478899987764432 334555565432 33
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... ...+...++.||+....+...+...+.
T Consensus 75 ~ii~~t~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 75 PIIMLTAKDSEIDKVIG-LEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CEEEEEESSCHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 34444433222111111 122566899999999999998887653
No 177
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=96.71 E-value=0.0079 Score=54.91 Aligned_cols=120 Identities=12% Similarity=0.235 Sum_probs=80.5
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..+++...
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMN---GLKLLEHIRNRGD- 78 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC--------CHHHHHHHHHTTC-
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHhcCC-
Confidence 4578999999999999999999999999999999999999888543 478999987765432 2334555655322
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~l~ 706 (876)
..++++++........... ...+...++.||+ ....+...++..+.
T Consensus 79 -~~~ii~~t~~~~~~~~~~~-~~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 79 -QTPVLVISATENMADIAKA-LRLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp -CCCEEEEECCCCHHHHHHH-HHHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred -CCCEEEEEcCCCHHHHHHH-HHcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 3344555443322211111 1125567999999 88899998888774
No 178
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=96.71 E-value=0.012 Score=53.70 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=83.9
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
++.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.....
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 79 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLD---GLDVIRSLRQNKVAN 79 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBC---HHHHHHHHHTTTCSS
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcCccC
Confidence 357899999999999999999999999999999999999888654 468889887765432 334556666543323
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.+.++++...... ..... ...+...++.||+....+...+.+....
T Consensus 80 ~~~ii~~~~~~~~-~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 80 QPKILVVSGLDKA-KLQQA-VTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CCEEEEECCSCSH-HHHHH-HHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CCeEEEEeCCChH-HHHHH-HHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 3444444332221 11111 1125668999999999999999887753
No 179
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=96.67 E-value=0.012 Score=54.09 Aligned_cols=121 Identities=11% Similarity=0.158 Sum_probs=85.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|..+...+ ...++..+++.. ...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPES---GLDLIRTIRASE-RAA 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSC---HHHHHHHHHTST-TTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCC---HHHHHHHHHhcC-CCC
Confidence 46899999999999999999999999999999999999887653 3478999987765432 334556666543 223
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.++++++........... ...+...++.||+....+...+++....
T Consensus 82 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDV-MHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp CEEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CCEEEEeCCCChHHHHHH-HhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 445555443332111111 1225668999999999999999988754
No 180
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=96.65 E-value=0.013 Score=54.39 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=85.6
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|...|+.+..+++..+++..+......++++++|..+...+ ...++..+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~ 77 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS---GMDILREIKKIT--PH 77 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSC---HHHHHHHHHHHC--TT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCc---HHHHHHHHHHhC--CC
Confidence 3689999999999999999999999999999999999998876556789999997764322 233555565542 23
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... ...+...++.||+....+...+..++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 78 MAVIILTGHGDLDNAILA-MKEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp CEEEEEECTTCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHH-HHhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 445555443322111111 122566799999999999999887764
No 181
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=96.64 E-value=0.0063 Score=61.22 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=85.4
Q ss_pred HHHHcCCEEEEEEeCCCcEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHHHHHHHHHhCc
Q 002821 527 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 606 (876)
Q Consensus 527 lv~~mgG~I~v~S~~g~GstF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~ 606 (876)
-+.+|||.|+|+|++|+||+|+|++|+......... ..........+.++|+||+++..+......|+.+|+
T Consensus 15 ~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~--------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~ 86 (206)
T 3mm4_A 15 PRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQET--------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGV 86 (206)
T ss_dssp C-----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cccccCCceeeeccCCCcceeeeccCCCCCcccccc--------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999998654322111 111122345788999999999999999999999999
Q ss_pred -EEEEeCCHHHHHHHHhcC-----------CCcceEEEeeccccccCcchhHHHHHHHhhcCC--CCCceEEEEeccc-C
Q 002821 607 -QVEVVSDQLQCLSQIASG-----------SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC--GFQSKLFLLANSI-S 671 (876)
Q Consensus 607 -~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~-~ 671 (876)
.|..+.+..+++..+... ...++++++|..+...+ ...++..+++... ....++++++... .
T Consensus 87 ~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~---G~el~~~lr~~~~~~~~~~piI~ls~~~~~ 163 (206)
T 3mm4_A 87 SEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMD---GYEATREIRKVEKSYGVRTPIIAVSGHDPG 163 (206)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSC---HHHHHHHHHHHHHTTTCCCCEEEEESSCCC
T ss_pred CeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCC---HHHHHHHHHhhhhhcCCCCcEEEEECCCCc
Confidence 999999999999987653 34689999998775433 3344555555321 1233444444332 2
Q ss_pred ccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 672 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
....... ...+...++.||+. .|...+.+.+.
T Consensus 164 ~~~~~~~-~~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 164 SEEARET-IQAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp HHHHHHH-HHHTCSEEEETTCT--THHHHHHHHC-
T ss_pred HHHHHHH-HhCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 1111111 11256679999998 78888887764
No 182
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.62 E-value=0.011 Score=55.15 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=85.8
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcCC--------CcceEEEeeccccccCcchhHHHH
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGS--------KIINMILVEQEVWEKDTSVSTLFV 649 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~ 649 (876)
.+.+++++|+++..+......|+..|+ .+..+.+..+++..+.... ..++++++|..+...+ ...++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~ 81 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTD---GREVL 81 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSC---HHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCC---HHHHH
Confidence 457899999999999999999999999 8999999999999887532 5689999997764322 23455
Q ss_pred HHHhhcCCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 650 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 650 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+++.......++++++........... ...+...++.||+....+...+.+.+.
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEIC-YSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 56655432233445555443322111111 122566899999999999998887764
No 183
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=96.61 E-value=0.014 Score=54.07 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=86.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC----CCcceEEEeeccccccCcchhHHHHHHHhh
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG----SKIINMILVEQEVWEKDTSVSTLFVNNLRK 654 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 654 (876)
..+++++|+++..+......|+..|. .+..+.+..+++..+... ...++++++|......+ ...++..+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~---g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMN---GIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC---HHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC---HHHHHHHHHc
Confidence 46899999999999999999999998 999999999999988752 25688999997664322 2345556655
Q ss_pred cCCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCC
Q 002821 655 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 708 (876)
Q Consensus 655 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~ 708 (876)
.......++++++........... ...+...++.||+....+...++...+.+
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAF-ESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHH-TTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred CccccCCcEEEEeCCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 432223445555443332221111 22356789999999999999988766543
No 184
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=96.61 E-value=0.025 Score=52.32 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=84.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++........
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMD---GWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCC
Confidence 5799999999999999999999999999999999999887654 468999987764432 23455666654333334
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
++++++..... .......+.+...++.||+....+...+...+..
T Consensus 79 ~ii~ls~~~~~-~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 79 PVLMLTAKPLT-PEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CEEEEESSCCC-HHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCh-HHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 44444433221 1111122334567999999999999999888753
No 185
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=96.60 E-value=0.013 Score=54.16 Aligned_cols=122 Identities=6% Similarity=0.150 Sum_probs=85.3
Q ss_pred CCcEEEEECCchhhHHHHHHHHHH-hCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~-~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 657 (876)
...+++++|+++..+......|+. .|+. +..+.+..+++..+... .++++++|......+ ...++..++....
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMD---GFSICHRIKSTPA 81 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSC---HHHHHHHHHTSTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCc---HHHHHHHHHhCcc
Confidence 357899999999999999999999 9999 99999999999888764 378899987664322 2345566665333
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.....+++++........... ...+...++.||+....+...+..++..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRI-VALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 334455555443332211111 1225668999999999999999988753
No 186
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=96.60 E-value=0.012 Score=53.51 Aligned_cols=119 Identities=16% Similarity=0.288 Sum_probs=80.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.++++++|+++..+...+..++..|+ .+..+.+..+++..+... .++++++|..+...+ ...+...+++.....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMD---GLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSC---HHHHHHHHHC--CCT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 46799999999999999999999999 799999999999887653 478889887664432 234555666533223
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
..++++++........... ...+...++.||+....+...+.+.+
T Consensus 79 ~~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp TCCEEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHH-HHhCcCceeecCCCHHHHHHHHHHHH
Confidence 3344444433222111111 11255679999999999998887765
No 187
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=96.58 E-value=0.031 Score=51.46 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=81.8
Q ss_pred ccCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCC
Q 002821 578 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 578 ~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 657 (876)
...+.+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|..+...+ ...++..++..
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~---g~~~~~~l~~~-- 85 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLS---IFSLLDIVKEQ-- 85 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSC---HHHHHHHHTTS--
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhh--
Confidence 34678999999999999999999999999999999999999887651 3478889887664322 23455556552
Q ss_pred CCCceEEEEe-cccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLA-NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.....+++++ ....... .... ...++.||+....+...+...+.
T Consensus 86 ~~~~~ii~ls~~~~~~~~----~~~~-~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 86 TKQPSVLILTTGRHELIE----SSEH-NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SSCCEEEEEESCC--CCC----CSSS-CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCCEEEEECCCCCHHH----HHHH-HHheeeCCCCHHHHHHHHHHHHH
Confidence 2234455554 3222211 1122 55789999999999999887654
No 188
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=96.55 E-value=0.0089 Score=55.87 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=85.4
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.....
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKIS---GMDLFNSLKKNPQTA 81 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHTSTTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCC---HHHHHHHHHcCcccC
Confidence 467899999999999999999999999999999999999887654 478899987664322 334566666532333
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...+++++........... ...+...++.||+....+...+..++.
T Consensus 82 ~~pii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQL-LDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp TSCEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4455555443332111111 112556799999999999999988775
No 189
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=96.55 E-value=0.016 Score=54.77 Aligned_cols=121 Identities=12% Similarity=0.239 Sum_probs=83.7
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
.++.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|......+ ...++..++....
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMG---GEVFLEQVAKSYP- 78 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSC---HHHHHHHHHHHCT-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC-
Confidence 4568999999999999999999999999999999999999888754 478999987664422 2334555555321
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++...............+...++.||+....+...+..++.
T Consensus 79 -~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 79 -DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp -TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 33444444433221111111111256799999999999998877663
No 190
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=96.53 E-value=0.017 Score=52.04 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=80.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...++........
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEIS---GLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSB---HHHHHHHHHHSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHcCccccCC
Confidence 4799999999999999999999999999999999999877653 468899987764332 23455666654322233
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... ...+...++.||+....+...+...+.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERI-REGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CEEEEC------CHHHH-HHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cEEEEECCCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 44444332221111111 112456799999999999999887764
No 191
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=96.52 E-value=0.015 Score=54.05 Aligned_cols=121 Identities=18% Similarity=0.286 Sum_probs=85.3
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcE--EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 657 (876)
...+++++|+++..+......|+..|.. +..+.+..+++..+.. ..++++++|..+...+ ...++..+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIAN---GFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGC---HHHHHHHHHSSST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhccc
Confidence 4578999999999999999999999987 8899999999988865 3478999987765432 3345566665433
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~l~ 706 (876)
....++++++............ ..+...++.||+ ....+...+..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCM-AAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHH-HTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 3344555555433322211111 225668999999 99999998887764
No 192
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=96.50 E-value=0.02 Score=51.75 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=82.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...+...+++.......
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGS---GIQFIKHLRRESMTRDI 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEE---HHHHHHHHHTSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCC---HHHHHHHHHhCcccCCC
Confidence 479999999999999999999999999999999999877654 3578888887654322 23455666654322334
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... ...+...++.||+....+...+...+.
T Consensus 78 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTARGEEEDRVRG-LETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEETTHHHHHHTT-CCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 45555443322221122 223566899999999999999887764
No 193
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=96.50 E-value=0.034 Score=51.39 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=81.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcC---C
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG---C 657 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~ 657 (876)
..+++++|+++..+......|+..|..+..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~---g~~~~~~l~~~~~~~~ 84 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMD---GLEAVSEIRNYERTHN 84 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSC---HHHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHhhhhhcC
Confidence 35899999999999999999999999999999999999887653 478999987765433 233445555421 1
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.....+++++........ ...+...++.||+....+...+...+.
T Consensus 85 ~~~~~ii~~s~~~~~~~~----~~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 85 TKRASIIAITADTIDDDR----PGAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp CCCCCCEEEESSCCSCCC----CCSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCceEEEEEeCccchhHH----HhCChhheEeCCCCHHHHHHHHHHHhC
Confidence 122333333332221111 133556899999999999999988774
No 194
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=96.47 E-value=0.019 Score=52.89 Aligned_cols=118 Identities=11% Similarity=0.131 Sum_probs=79.7
Q ss_pred cccCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcC
Q 002821 577 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 656 (876)
Q Consensus 577 ~~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 656 (876)
....+.+++++|+++..+......|+.+|+.+..+.+..+++..+... .+++++ + .......++..++..
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~---~~~~g~~~~~~l~~~- 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----V---SDKNALSFVSRIKEK- 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----E---CSTTHHHHHHHHHHH-
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----E---cCccHHHHHHHHHhc-
Confidence 345678999999999999999999999999999999999999887764 355555 1 112233455666655
Q ss_pred CCCCceEEEEecccCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhc
Q 002821 657 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 706 (876)
Q Consensus 657 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~l~ 706 (876)
.....+++++........... ...+...++.||+ ....+...+...+.
T Consensus 84 -~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 84 -HSSIVVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp -STTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred -CCCccEEEEeCCCCHHHHHHH-HHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 113444544443322111111 1125667999999 99999999987764
No 195
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=96.42 E-value=0.016 Score=53.35 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=81.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCc-EEEEeCCHHHHHHHHhc---CCCcceEEEeeccccccCcchhHHHHHHHhhcCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 657 (876)
.+++++|+++..+......|+..|+ .+..+.+..+++..+.. ....++++++|..+...+ ...+...+++...
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~---G~~~~~~lr~~~~ 79 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVD---GLLSTKMIRRDLG 79 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSC---HHHHHHHHHHHSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC---hHHHHHHHHhhcC
Confidence 5799999999999999999999997 48889999999987654 123578999998775433 2344555654322
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
. ..++++++........... ...+...++.||+....+...+.+.+.
T Consensus 80 ~-~~~ii~lt~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 80 Y-TSPIVALTAFADDSNIKEC-LESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp C-CSCEEEEESCCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred C-CCCEEEEECCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 2 2344444433222111111 112566899999999999999988764
No 196
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=96.40 E-value=0.052 Score=48.09 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=79.3
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+++..+++..+... .++++++|..+...+ ...+...+++.. ...
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~--~~~ 74 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGIS---GLEVAGEIRKKK--KDA 74 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHHC--TTC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHccC--CCC
Confidence 3799999999999999999999999999999999999887654 478899987764332 233455555543 223
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
++++++...... . .....+...++.||+....+...+.+.+
T Consensus 75 ~ii~~s~~~~~~-~--~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 75 KIILLTAYSHYR-S--DMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CEEEEESCGGGG-G--CGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred eEEEEECCcchH-H--HHHhccccceEECCCCHHHHHHHHHHHh
Confidence 444444332221 1 1112345679999999999988887653
No 197
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.40 E-value=0.0013 Score=67.55 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=39.0
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccC----------CCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCCCc
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVG----------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 544 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~----------~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~G 544 (876)
.|.|.|||+||+++++...|.+....+ .......|-.|+||+-+-. ..-++.|.|....+
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr~~~~ 149 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHNDD 149 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTTS
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEecCCC
Confidence 589999999999999877665432211 0112344667999986532 23378888876543
No 198
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=96.39 E-value=0.064 Score=48.66 Aligned_cols=121 Identities=13% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
+..+++++|+++..+......|+..|+.+..+.+..+++..+... ..++++++|...... .....++..++... .
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~--~~g~~~~~~l~~~~--~ 78 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQP--PDGWQVARVAREID--P 78 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSS--SCHHHHHHHHHHHC--T
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCC--CCHHHHHHHHHhcC--C
Confidence 457899999999999999999999999999999999999888754 257888888765430 11233455565542 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCC
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 708 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~ 708 (876)
..++++++............. ...++.||+....+...+.+.+...
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~---~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 79 NMPIVYISGHAALEWASNGVP---DSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp TCCEEEEESSCCTTHHHHSCT---TCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCccHHHHHhhcC---CcceEeCCCCHHHHHHHHHHHHhcC
Confidence 344455444332221111111 1258999999999999999888643
No 199
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=96.39 E-value=0.021 Score=53.84 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=84.4
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
...+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~ 85 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMD---GPTLLARIHQQY--P 85 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHHC--T
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCc---HHHHHHHHHhHC--C
Confidence 467899999999999999999999999999999999999988764 478999998765432 234455555532 2
Q ss_pred CceEEEEecccCccccCCCCCCCC-CCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++............. .+ ...++.||+....+...+...+.
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAIN-EGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHHH-TTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHh-CCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 344555444332221111111 24 56799999999999999887764
No 200
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=96.38 E-value=0.023 Score=52.35 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=83.2
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeecccc-ccCcchhHHHHHHHhhcCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~ 657 (876)
...+++++|+++..+......|+..|+.+. .+.+..+++..+... .++++++|.... ..+ ...++..++..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~---g~~~~~~l~~~-- 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALD---GVETAARLAAG-- 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSC---HHHHHHHHHHH--
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCC---HHHHHHHHHhC--
Confidence 457899999999999999999999999999 599999999887653 478899987654 222 23345556554
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++++........... ...+...++.||+....+...+..++.
T Consensus 81 -~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 -CNLPIIFITSSQDVETFQRA-KRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp -SCCCEEEEECCCCHHHHHHH-HTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCCHHHHHHH-HhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 23445555443332111111 123566899999999999999988764
No 201
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=96.35 E-value=0.042 Score=50.67 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=80.3
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+.. +.+..+.+..+++..+... .++++++|..+...+. ..++..+++......
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ 76 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENS---PNLCLKLKRSKGLKN 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC---------CHHHHHHTSTTCTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcH---HHHHHHHHcCcccCC
Confidence 368999999999999999999988 9999999999999887654 4788999977644332 224455555433234
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.+++++............ ...+...++.||+....+...+...+.
T Consensus 77 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 77 VPLILLFSSEHKEAIVNG-LHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCEEEEECC----CTTTT-TTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHH-HhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 445555443332222222 233567899999999999999887764
No 202
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=96.32 E-value=0.011 Score=55.23 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=84.7
Q ss_pred cccCCcEEEEECCchhhHHHHHHHHHHhC-cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhc
Q 002821 577 SEFQGMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 655 (876)
Q Consensus 577 ~~~~g~~~lvvd~~~~~~~v~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 655 (876)
....+.+++++|+++..+......|...| +.+..+.+..+++..+......++++++|..+... ....++..+++.
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~---~g~~~~~~l~~~ 92 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDT---AELAAIEKLSRL 92 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCH---HHHHHHHHHHHH
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCc---cHHHHHHHHHHh
Confidence 34567899999999999999999999999 99999999888876654321357889998776432 233345555554
Q ss_pred CCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 656 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 656 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
. ....+++++........... ...+...++.||+....+...+..++..
T Consensus 93 ~--~~~~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 93 H--PGLTCLLVTTDASSQTLLDA-MRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp C--TTCEEEEEESCCCHHHHHHH-HTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred C--CCCcEEEEeCCCCHHHHHHH-HHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3 23344554443322111111 1225567999999999999999888753
No 203
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=96.32 E-value=0.027 Score=52.90 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=84.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCc--EEEEeCCHHHHHHHHhcC-----CCcceEEEeeccccccCcchhHHHHHHHh
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 653 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~--~v~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 653 (876)
..+++++|+++..+......|+..|. .+..+.+..+++..+... ...++++++|..+...+ ...++..++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~---g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKD---GREVLAEIK 84 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSC---HHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCc---HHHHHHHHH
Confidence 46899999999999999999998886 889999999999887653 24579999998765433 234556666
Q ss_pred hcCCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 654 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 654 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+.......++++++............ ..+...++.||+....+...++..+.
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVIASY-ELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 54322334455554433222111111 12566899999999999998887653
No 204
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=96.31 E-value=0.016 Score=51.27 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=80.2
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
+.+++++|+++..+......|+.+|+++..+.+..+++..+... .++++++|...... ....++..+++......
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~---~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQ---SCLLLLQHLREHQADPH 75 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCC---THHHHHHHHHHTCCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCC---CHHHHHHHHHhccccCC
Confidence 35899999999999999999999999999999999999887654 46888888765332 22345566665432233
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
.+++++....... .....+...++.||+....+...+...+
T Consensus 76 ~~ii~~~~~~~~~----~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 76 PPLVLFLGEPPVD----PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCEEEESSCCSS----HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCEEEEeCCCCch----hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 3444444432221 1111245578999999999988887554
No 205
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=96.22 E-value=0.014 Score=53.80 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=83.6
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+.... .....++..+++.. ..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~-~~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKK-DSGIELLETLVKRG--FH 80 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBT-THHHHHHHHHHHTT--CC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCC-ccHHHHHHHHHhCC--CC
Confidence 4689999999999999999999999999999999999877654 3588999987764410 22334556666543 23
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.++++++........... ...+...++.||+....+...+.+++..
T Consensus 81 ~~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRA-MRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHH-HHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 344444443322111111 1225667999999999999999888753
No 206
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=96.20 E-value=0.027 Score=51.83 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=83.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeecccccc--CcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK--DTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|...... .......++..+++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~-- 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY-- 78 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC--
Confidence 46899999999999999999999999999999999999888764 37889998765410 0112233455555542
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
...++++++........... ...+...++.||+....+...+..++..
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRG-IKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCHHHHHHH-HHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 23344444443222111111 1125668999999999999999988753
No 207
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=96.19 E-value=0.0094 Score=58.55 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=81.8
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
....+++++|+++..+......|+..|+.|..+.+..+++..+.. ..++++++|..+...+ ...++..+++...
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~~- 78 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDS---GLSLIAPLCDLQP- 78 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEE---SHHHHHHHHHHCT-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCcc---HHHHHHHHHhcCC-
Confidence 346789999999999999999999999999999999999998865 3578999998765433 2344555555322
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
..++++++........... -..+...++.||+....+...+...+
T Consensus 79 -~~~ii~lt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 79 -DARILVLTGYASIATAVQA-VKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp -TCEEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred -CCCEEEEeCCCCHHHHHHH-HHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 3344444433222111111 12255679999999999988776544
No 208
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=96.17 E-value=0.051 Score=49.11 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=81.7
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMS---GVELLRNLGDLK--IN 75 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSC---HHHHHHHHHHTT--CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999999887653 468899987764432 233455555532 23
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++............ ..+...++.||+....+...+...+.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAM-KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHH-HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 3444444332221111111 12556899999999999999988764
No 209
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=96.16 E-value=0.014 Score=53.14 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=81.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
..+++++|+++..+......|+..|+ .+..+.+..+++..+... .++++++|..+...+ ...+...+++.....
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMD---GLGLLQAVRANPATK 80 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSC---HHHHHHHHTTCTTST
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCC---HHHHHHHHhcCcccc
Confidence 36799999999999999999999999 888999999999887653 468889887664332 233455665543223
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++........... ...+...++.||+....+...+...+.
T Consensus 81 ~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 81 KAAFIILTAQGDRALVQKA-AALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TCEEEECCSCCCHHHHHHH-HHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 3444444333221111111 112456789999999999998887653
No 210
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=96.15 E-value=0.032 Score=49.83 Aligned_cols=116 Identities=12% Similarity=0.193 Sum_probs=78.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
+.+++++|+++..+......|+..|+. +..+.+..+++..+... .++++++|..+...+ ...+...+++.. .
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~--~ 74 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMN---GIDAIKEIMKID--P 74 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGC---HHHHHHHHHHHC--T
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHhhC--C
Confidence 358999999999999999999999999 56889999999887653 468899987765432 233455555543 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHH
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 704 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~ 704 (876)
..++++++............ ..+...++.||+....+...+.+.
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 75 NAKIIVCSAMGQQAMVIEAI-KAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp TCCEEEEECTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHH
Confidence 23444444433221111111 125567999999999998888764
No 211
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=96.11 E-value=0.038 Score=51.81 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=84.2
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 656 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 656 (876)
...++++++|+++..+......|...| ..+..+.+..+++..+... .++++++|..+...+ ...++..+++..
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~ 92 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKT---GLEVLEWIRSEK 92 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSC---HHHHHHHHHHTT
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCc---HHHHHHHHHHhC
Confidence 345799999999999999999999988 7899999999999888654 478999997765432 334555565542
Q ss_pred CCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 657 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 657 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++++........... ...+...++.||+....+...+.+.+.
T Consensus 93 --~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 93 --LETKVVVVTTFKRAGYFERA-VKAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp --CSCEEEEEESCCCHHHHHHH-HHTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred --CCCeEEEEeCCCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 23445555443332111111 122566899999999999999998875
No 212
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=96.10 E-value=0.039 Score=49.24 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=79.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++.... ..
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~~--~~ 73 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDED---GLSLIRRWRSNDV--SL 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHTTC--CS
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHhcCC--CC
Confidence 3689999999999999999999999999999999999887654 468888887664332 2334555554321 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
++++++........... ...+...++.||+....+...+...+
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 74 PILVLTARESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp CEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHH-HHcCccceEECCCCHHHHHHHHHHHH
Confidence 44444433222111111 11255679999999999998887765
No 213
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=96.08 E-value=0.01 Score=54.70 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=81.4
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhC-cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
...+++++|+++..+......|+..| +.+..+.+..+++..+.. ..++++++|..+...+.. .++..+++...
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~- 86 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGK---PGIVEARALWA- 86 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGS---TTHHHHHGGGT-
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHH---HHHHHHHhhCC-
Confidence 34689999999999999999999999 999999999988876643 457889998876543322 23445554432
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++........... ...+...++.||+....+...+.+.+.
T Consensus 87 -~~~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 87 -TVPLIAVSDELTSEQTRVL-VRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp -TCCEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred -CCcEEEEeCCCCHHHHHHH-HHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 3344444443322111111 122566799999999999998887653
No 214
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=96.08 E-value=0.033 Score=51.54 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=82.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|. ... .....++..+++... .
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~---~~g~~~~~~l~~~~~--~ 75 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEG---EESLNLIRRIREEFP--D 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTT---HHHHHHHHHHHHHCT--T
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCC---CcHHHHHHHHHHHCC--C
Confidence 46899999999999999999999999999999999999888764 578899887 422 222344555555322 3
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.++++++........... ...+...++.||+....+...+...+..
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINS-VKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp CEEEEEESCCCHHHHHHH-HHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHH-HHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 445555443322111111 1124567899999999999999988753
No 215
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=96.01 E-value=0.032 Score=50.94 Aligned_cols=118 Identities=9% Similarity=0.186 Sum_probs=82.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
++++++|+++..+......|+..|+.+. .+++..+++..+... .++++++|..+...+ ...++..+++... .
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~--~ 74 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 74 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHTTC--C
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCC---hHHHHHHHHhcCC--C
Confidence 5799999999999999999999999997 889998888887653 478899987764432 3345556665422 3
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
.++++++............ ..+...++.||+....+...++..+..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCA-DAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHHH-HTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3455554433322111111 225668999999999999999988753
No 216
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=96.00 E-value=0.034 Score=50.05 Aligned_cols=117 Identities=12% Similarity=0.165 Sum_probs=80.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++.. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~--~~~ 76 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMD---GIEILKRMKVID--ENI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCC---HHHHHHHHHHHC--TTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHHhC--CCC
Confidence 4799999999999999999999999999999999999887653 468899987764332 233455555432 233
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... ...+...++.||+....+...+.+.+.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQES-KELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHH-HhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 44444433222111111 112456789999999999999887653
No 217
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=95.96 E-value=0.057 Score=49.34 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=80.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+...+..|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++... ..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDME---GTELLEKAHKLRP--GM 76 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCc---hHHHHHHHHhhCC--CC
Confidence 5799999999999999999999999999999999999887653 468899987764332 2334455554322 33
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... ...+...++.||+....+...+...+.
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIMVTGYASLENSVFS-LNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEEESCCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHH-HhccchhhccCCCCHHHHHHHHHHHHh
Confidence 44444433222111111 122566899999999999998877653
No 218
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=95.93 E-value=0.063 Score=49.08 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=81.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++... ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLD---GIEVCKQLRQQKL--MF 76 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--CC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHcCCC--CC
Confidence 5899999999999999999999999999999999999877653 468888887664332 2345556665422 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
++++++........... ...+...++.||+....+...+...+..
T Consensus 77 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLG-LELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CEEEEECTTCCCCHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHH-HhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 44444433222111111 1225668999999999999999887753
No 219
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=95.93 E-value=0.13 Score=51.97 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=83.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.++++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~--~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLD---GVSVVTALRAMD--ND 79 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSC---HHHHHHHHHHTT--CC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 46899999999999999999999999999999999999887654 478899987765432 233455555532 23
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... -..+...++.||+....+...+...+.
T Consensus 80 ~~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVAG-LEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCTT-TTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 344444433322221111 223566899999999999999888764
No 220
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=95.92 E-value=0.018 Score=52.91 Aligned_cols=118 Identities=10% Similarity=0.054 Sum_probs=83.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.++++++|+++..+......|+..|..+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~ 79 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLG---GLEMLDRIKAGG--AK 79 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--CC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 47899999999999999999999999999999999999887654 478899987764422 334555666543 22
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... ...+...++.||+....+...+.+.+.
T Consensus 80 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 80 PYVIVISAFSEMKYFIKA-IELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CEEEECCCCCCHHHHHHH-HHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCcChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 344444333221111111 122456789999999999999988764
No 221
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=95.90 E-value=0.037 Score=52.14 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=81.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
+.+++++|+++..+......|...|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ..
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~---g~~~~~~l~~~~--~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMD---GLALFRKILALD--PD 75 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSC---HHHHHHHHHHHC--TT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 4689999999999999999999999999999999999987755 3478899987664322 233455555542 23
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... ...+...++.||+....+...+..++.
T Consensus 76 ~pii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQA-IQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp SCEEEEECGGGHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 344444433222111111 112566899999999999998887764
No 222
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=95.90 E-value=0.039 Score=50.88 Aligned_cols=117 Identities=14% Similarity=0.211 Sum_probs=81.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|...|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~---~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGD---GWTLCKKIRNVT---T 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEE---HHHHHHHHHTTC---C
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHccCC---C
Confidence 36899999999999999999999999999999999999887654 468888887664322 234556666532 3
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... ...+...++.||+....+...+...+.
T Consensus 76 ~~ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 76 CPIVYMTYINEDQSILNA-LNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCEEEEESCCCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 344444433222111111 112556899999999999998887764
No 223
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.86 E-value=0.0043 Score=74.25 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=72.6
Q ss_pred HHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCC
Q 002821 743 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 822 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~ 822 (876)
+.+...|++.||+|..+.++.+|+..+.....+++|++|.+|+ +.+++++||+. +
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~----------------------~ 74 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKM----------------------N 74 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHH----------------------C
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHh----------------------C
Confidence 4456889999999999999999999997656799999999996 78999999984 3
Q ss_pred CCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHH
Q 002821 823 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ 859 (876)
Q Consensus 823 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~ 859 (876)
..+||++++.....++..-..-.++++|+.+..+..+
T Consensus 75 ~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (715)
T 3n75_A 75 ENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAE 111 (715)
T ss_dssp TTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHH
T ss_pred CCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHH
Confidence 5799999998855443322223578999999875433
No 224
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=95.85 E-value=0.045 Score=49.08 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=79.2
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+++..+++..+... .++++++|..+...+ ...+...+++. ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~---~~~ 75 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKN---GLLLARELREQ---ANV 75 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHH---CCC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHhC---CCC
Confidence 4799999999999999999999999999999999999887653 468888887764332 23345555554 133
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
.+++++........... ...+...++.||+....+...+...+
T Consensus 76 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 44444433222111111 11245679999999999988887665
No 225
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.85 E-value=0.0063 Score=67.51 Aligned_cols=50 Identities=34% Similarity=0.552 Sum_probs=34.3
Q ss_pred EEEEEeeCCCCChhh--------HhhhcccccccC---CCCCCCCCc-ccccHHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEA--------QSRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 530 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~ 530 (876)
.|+|.|+|.|||.+. .+-+|..+.... ....+..+| .|.||+.+..+.+.
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~ 128 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCe
Confidence 489999999999988 444777554321 111222344 89999999888753
No 226
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=95.83 E-value=0.06 Score=48.16 Aligned_cols=115 Identities=12% Similarity=0.206 Sum_probs=78.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++ ....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~---~~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDEN---GLMLTRALRE---RSTV 74 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHT---TCCC
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCC---hHHHHHHHHh---cCCC
Confidence 4799999999999999999999999999999999998877653 468888887764332 2334555655 1223
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
++++++........... ...+...++.||+....+...+...+
T Consensus 75 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 75 GIILVTGRSDRIDRIVG-LEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCChhhHHHH-HHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 44444433222111111 11245679999999999988887665
No 227
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.76 E-value=0.0076 Score=63.19 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=34.9
Q ss_pred EEEEEeeCCCCChhhHhhhccc--------cc---ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTP--------FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|||+||+++.+..-+.. |. +.+.......|-.|+|+.-|-. .+-++.|.|...
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~----vadkV~V~Sk~~ 162 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL----VADKVIVYTKNN 162 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc----ccCEEEEEEecC
Confidence 4899999999999987543321 21 1101112345778999865533 234577777654
No 228
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=95.71 E-value=0.048 Score=51.15 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=80.6
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+. |+.+..+.+..+++..+.... +++++++|..+...+ ...++..+++.. ..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~---g~~~~~~l~~~~--~~ 76 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGME---GTEVIQKARLIS--PN 76 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSC---HHHHHHHHHHHC--SS
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCc---HHHHHHHHHhcC--CC
Confidence 46899999999999999999975 999999999999998887643 478999998765432 233455555432 22
Q ss_pred ceEEEEecccCccccCCCCCCCC-CCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++............. .+ ...++.||+....+...+...+.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVN-EGQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHH-HTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHH-cCCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 34444443332211111111 13 56789999999999998887663
No 229
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.69 E-value=0.0029 Score=65.63 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=36.1
Q ss_pred EEEEEeeCCCCChhhHhhhccccccc----------CCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQV----------GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~----------~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|||+||+++++..-|....+. +.......|-.|+||+-+-.+ .-++.|.|...
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~V----adkv~V~Sr~~ 175 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 175 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhcc----CCeEEEEEcCC
Confidence 58999999999999886555332110 001123456789999865332 23677777654
No 230
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.64 E-value=0.0036 Score=64.62 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=37.0
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCCCC---------------CCCCCcccccHHHHHHHHHHcCCEEEEEEeCCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSI---------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 543 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~s~---------------~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g~ 543 (876)
.|.|.|||+||+++++...|..+.+..... ....|..|+|+.-+..+ ..++.|.|....
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~v----a~~v~V~Sr~~~ 153 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLV----ADKVIVTSKHNN 153 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhc----CCEEEEEEeCCC
Confidence 489999999999999988876554321110 00113378888654443 367888887753
No 231
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=95.64 E-value=0.069 Score=50.04 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=83.8
Q ss_pred ccCCcEEEEECCchhhHHHHHHHHHHhCcE--EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhc
Q 002821 578 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 655 (876)
Q Consensus 578 ~~~g~~~lvvd~~~~~~~v~~~~l~~~g~~--v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 655 (876)
...+.+++++|+++..+......|...|.. +..+.+..+++..+... .++++++|..+...+ ...++..+++.
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~ 86 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMD---GAQVAAAVRSY 86 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHT
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhc
Confidence 346789999999999999999999999954 66799999999887653 478899998764432 33455566554
Q ss_pred CCCCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 656 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 656 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
. ...++++++............ ..+...++.||+....+...+...+..
T Consensus 87 ~--~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 87 E--LPTRVLLISAHDEPAIVYQAL-QQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp T--CSCEEEEEESCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred C--CCCeEEEEEccCCHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2 233455554433322111111 225668999999999999999988753
No 232
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=95.64 E-value=0.022 Score=65.86 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=30.6
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCC------------CCCCCCCcccccHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYL 527 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~------------s~~~~~~GtGLGLsI~k~l 527 (876)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.+
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~V 133 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 133 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhc
Confidence 4899999999999998776654432211 1122346779998655544
No 233
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=95.61 E-value=0.1 Score=52.46 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=83.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~lr~~~--~~~ 75 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHD---GWEILKSMRESG--VNT 75 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHTT--CCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 5899999999999999999999999999999999999887654 478899987765432 234555665542 233
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... -..+...++.||+....+...+...+.
T Consensus 76 ~ii~ls~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 76 PVLMLTALSDVEYRVKG-LNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CEEEEESSCHHHHHHHT-CCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHH-HhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 44444433222111111 223566899999999999999988774
No 234
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=95.52 E-value=0.077 Score=49.76 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=82.8
Q ss_pred CCcEEEEECCchhhHHHHHHHHHH-hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~-~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 657 (876)
+..+++++|+++..+......|+. .|+.+. .+.+..+++..+.... ++++++|..+...+ ...++..+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~---g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPG---GIEATRHIRQWDG 78 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSC---HHHHHHHHHHHCT
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCC---HHHHHHHHHHhCC
Confidence 457899999999999999999998 899988 8999999998887643 78899987764322 2345556655422
Q ss_pred CCCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 658 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...+++++........... ...+...++.||+....+...+...+.
T Consensus 79 --~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 79 --AARILIFTMHQGSAFALKA-FEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp --TCCEEEEESCCSHHHHHHH-HHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred --CCeEEEEECCCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 2344444443322111111 112566799999999999999988764
No 235
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=95.46 E-value=0.066 Score=47.58 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=78.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++. ...
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~---~~~ 73 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEID---GLEVAKTIRKT---SSV 73 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHH---CCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCC---HHHHHHHHHhC---CCC
Confidence 3789999999999999999999999999999999999887653 468888887664332 23345555542 123
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... ...+...++.||+....+...+...+.
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 74 PILMLSAKDSEFDKVIG-LELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp CEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHH-HhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 34444433222111111 112456799999999999988877653
No 236
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.02 Score=67.35 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=28.0
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCC----------CCCCCCCcccccHHHH
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSIS 524 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~----------s~~~~~~GtGLGLsI~ 524 (876)
.|+|.|||+||+++++..-|...-+.+. ......|..|+|+.=|
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa 127 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL 127 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH
Confidence 4899999999999998766543221100 1112346678888544
No 237
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.43 E-value=0.011 Score=59.48 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=23.3
Q ss_pred EEEEEeeCCCCChhhH--------hhh-cccccccC--CC-CCCCCCcccccHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEAQ--------SRI-FTPFMQVG--PS-ISRTHGGTGIGLSISKYLVG 529 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~--------~~i-F~pF~q~~--~s-~~~~~~GtGLGLsI~k~lv~ 529 (876)
.|+|.|+|.|||.+.. +.+ +.+....+ +. .....|=-|.||+.+..+.+
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~ 110 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 110 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc
Confidence 3899999999999873 343 34432211 11 11122336899998887763
No 238
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=95.32 E-value=0.093 Score=52.09 Aligned_cols=116 Identities=9% Similarity=0.133 Sum_probs=80.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.+++++|+++..+......|...|+.+. .+.+..+++..+... .++++++|..+...+ ...++..++....
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~---g~~~~~~l~~~~~--- 85 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRD---GIDAASEIASKRI--- 85 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC---
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCC---hHHHHHHHHhcCC---
Confidence 5899999999999999999999999988 899999999887653 478899987764432 2345555655432
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... ...+...++.||+....+...+..++.
T Consensus 86 ~pii~lt~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 86 APIVVLTAFSQRDLVERA-RDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp SCEEEEEEGGGHHHHHTT-GGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 234444333222111111 123566799999999999998887663
No 239
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.29 E-value=0.053 Score=59.82 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=82.3
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
+++++|||++..+......|+..|+.+..+.+..+++..+... .++++++|..+...++. .++..+++... ..
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~---ell~~lr~~~~--~~ 73 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGV---NFIDFIKENSP--DS 73 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETT---THHHHHHHHCT--TC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHH---HHHHHHHhhCC--CC
Confidence 3799999999999999999999999999999999999988654 47899999877654432 23445554321 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++........... -..+...++.||+....+...+.+++.
T Consensus 74 pvI~lT~~~~~~~~~~a-~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 74 VVIVITGHGSVDTAVKA-IKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp EEEEEECSSCCHHHHHH-HHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 44444433222111111 112456799999999999999988775
No 240
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=95.27 E-value=0.22 Score=54.44 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=111.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++|+++..+......|+.. |+. +..+.+..+++..+... .++++++|..+...+ ...++..+++...
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~--~pDlVllDi~mp~~d---Glell~~l~~~~p-- 76 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF--NPDVLTLDVEMPRMD---GLDFLEKLMRLRP-- 76 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEECCCSSSC---HHHHHHHHHHSSC--
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc--CCCEEEEECCCCCCC---HHHHHHHHHhcCC--
Confidence 68999999999999999999986 998 67899999999887653 478999998775433 2335556655432
Q ss_pred CceEEEEecccCccc-cCCCCCCCCCCceeccCCch---------HHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCC
Q 002821 660 QSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLRS---------SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 729 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~~~---------~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 729 (876)
.+++++........ ........+...++.||+.. ..+...++.+........ . ..+. ... ...
T Consensus 77 -~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~~~~~-~--~~~~-~~~--~~~ 149 (349)
T 1a2o_A 77 -MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAH-K--PMAA-PTT--LKA 149 (349)
T ss_dssp -CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCCGGGG-S--CCCC-CCC--CCC
T ss_pred -CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhhcccC-C--Cccc-cCC--CCC
Confidence 34444433222100 00000112556789999973 667777766654321110 0 0000 000 000
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCE-EEEEcCHHHHHHHhCC--CCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMP--PHQFDACFMDIQMPEMDGFEATKIIREM 799 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eA~~~~~~--~~~~DlilmDi~MP~mdG~e~~~~IR~~ 799 (876)
.++. ...... +-....|.+|++.+.. +..|++++++.+||..-.-.+.+++.+.
T Consensus 150 ~~~~----------------~~~~vv~iGaS~gG~~al~~~l~~lp~~~~~ivivqH~~~~~~~~~~~~l~~~ 206 (349)
T 1a2o_A 150 GPLL----------------SSEKLIAIGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKL 206 (349)
T ss_dssp CCCC----------------CTTCEEEEEECTTHHHHHHHHHTTCCTTCCEEEEEECCCTTHHHHHHHHHHHH
T ss_pred cccC----------------CCceEEEEecCcccHHHHHHHHHhCCCCCCeEEEEecCCCCccHHHHHHHhcc
Confidence 0000 000111 1134578889887632 2346779999999998888888888763
No 241
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=95.23 E-value=0.042 Score=50.03 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=81.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+..|..+..+++..+++..+... ++++++|..+... ....++..+++.. ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~---~dlvi~D~~l~~~---~g~~~~~~l~~~~--~~ 74 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK---QDIIILDLMMPDM---DGIEVIRHLAEHK--SP 74 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT---TEEEEEECCTTTT---HHHHHHHHHHHTT--CC
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccC---CCEEEEeCCCCCC---CHHHHHHHHHhCC--CC
Confidence 46899999999999999999999999999999998887665443 8999999766432 2334555665533 22
Q ss_pred ceEEEEecccCcc----ccCCCCCCCCCCceeccCCchHHHHHHHHHHhcCC
Q 002821 661 SKLFLLANSISSS----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 708 (876)
Q Consensus 661 ~~~~ll~~~~~~~----~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~~ 708 (876)
.++++++...... .........+...++.||+....+...+.++....
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 75 ASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 3444444332210 11001122245578999999999999999887543
No 242
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=95.23 E-value=0.11 Score=51.58 Aligned_cols=118 Identities=10% Similarity=0.093 Sum_probs=80.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..+++++|+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...+...++... ..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~--~~ 76 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMS---GIELQEQLTAIS--DG 76 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSC---HHHHHHHHHHTT--CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3589999999999999999999999999999999999987654 3578899987765432 234555665542 22
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
.++++++........... -..+...++.||+....+...+...+.
T Consensus 77 ~~ii~ls~~~~~~~~~~a-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 77 IPIVFITAHGDIPMTVRA-MKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CCEEEEESCTTSCCCHHH-HHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHH-HHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 344444433221111111 112455789999999999888877653
No 243
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.21 E-value=0.073 Score=49.08 Aligned_cols=116 Identities=10% Similarity=0.101 Sum_probs=79.8
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ...+
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~--~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMS---GEDVLDWINQND--IPTS 78 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSB---HHHHHHHHHHTT--CCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcC--CCCC
Confidence 799999999999999999999999999999999999887653 468899887664432 233455555532 2234
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
+++++........... ...+...++.||+....+...+...+.
T Consensus 79 ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNL-IQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHH-HHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4444433222111111 112556799999999999998877664
No 244
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=95.16 E-value=0.12 Score=48.49 Aligned_cols=120 Identities=11% Similarity=0.120 Sum_probs=78.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHh-Cc-EEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRL-GI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~-g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
.++++++|+++..+......|+.. |+ .+..+.+..+++..+... ..++++++|..+...+ ...++..++...
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 76 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAE---AIDGLVRLKRFD-- 76 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC---------CHHHHHHHHHHC--
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCc---hHHHHHHHHHhC--
Confidence 368999999999999999999998 88 788999999999988762 3578888887664332 233455555542
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
...++++++........... ...+...++.||+....+...+..++..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAA-LEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp TTSEEEEC-----CHHHHHH-HHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHH-HHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 12344444433221111111 1225667899999999999999988753
No 245
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=94.96 E-value=0.15 Score=46.48 Aligned_cols=117 Identities=9% Similarity=0.119 Sum_probs=80.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++|+++..+......|+..| ..+..+.+..+++..+... .++++++|..+...+ ...++..+++.. .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~---g~~~~~~l~~~~--~ 76 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMT---GLEVLAEIRKKH--L 76 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTT--C
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHHHC--C
Confidence 579999999999999999999987 6678899999999887653 468899987764432 234455565531 2
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++............ ..+...++.||+....+...+.+.+.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKAV-VNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 34445544433221111111 12566899999999999999988764
No 246
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.93 E-value=0.0073 Score=62.01 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=34.4
Q ss_pred EEEEEeeCCCCChhhHhhhcc--------cccc---cCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEeCC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFT--------PFMQ---VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 542 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~--------pF~q---~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~g 542 (876)
.|.|.|||+||+++++..-+. .|.. .+ ......|-.|+|++-|-.+ .-++.|.|..+
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~-~d~~~IGqFGvGfySaf~v----adkv~V~Sk~~ 154 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLV----AEKVVVITKHN 154 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhccc-CCcccccccCccccccccc----CCEEEEEEeeC
Confidence 589999999999998743221 1211 11 1123457789999876333 23566666543
No 247
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=94.89 E-value=0.21 Score=45.93 Aligned_cols=116 Identities=16% Similarity=0.260 Sum_probs=79.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHh-CcE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~-g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......|+.. |+. +..+.+..+++..+... .++++++|..+...+ ...++..+++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 81 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLD---GVLLAQNISQFA-- 81 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSC---HHHHHHHHTTST--
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCC---HHHHHHHHHccC--
Confidence 478999999999999999999887 888 56889999999887664 378999987664322 233455555432
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..+.+++++.. ... .... ...+...++.||+....+...+.+.+.
T Consensus 82 ~~~~ii~~s~~-~~~-~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 82 HKPFIVFITAW-KEH-AVEA-FELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp TCCEEEEEESC-CTT-HHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCceEEEEeCC-HHH-HHHH-HhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 22444554433 211 1111 123556799999999999999887764
No 248
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=94.87 E-value=0.093 Score=47.60 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=79.3
Q ss_pred cEEEEECCchhhHHHHHHHHHHh-CcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~-g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
.+++++|+++..+......+... |+.+. .+.+..+++..+... .++++++|..+...+ ...++..+++... .
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~~-~ 76 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLD---GLAVLERIRAGFE-H 76 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHHHCS-S
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHhcCC-C
Confidence 57999999999999999999987 88864 789999999887653 468899987764432 2344555655311 2
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++........... ...+...++.||+....+...+.+.+.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 77 QPNVIMLTAFGQEDVTKKA-VELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp CCEEEEEEETTCHHHHHHH-HHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 2444444443222111111 112456789999999999999988775
No 249
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=94.84 E-value=0.12 Score=52.81 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=82.4
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++... ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~~~~~lr~~~---~~ 77 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMN---GIDVCRVLRADS---GV 77 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHTTC---CC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCC---CC
Confidence 5899999999999999999999999999999999999887653 478899987764432 233455665532 33
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
++++++........... -..+...++.||+....+...+..++..
T Consensus 78 ~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 78 PIVMLTAKTDTVDVVLG-LESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp CEEEEEETTCCSCHHHH-HHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred cEEEEeCCCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 44444433222111111 1225668999999999999999988754
No 250
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=94.79 E-value=0.27 Score=45.38 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=76.3
Q ss_pred cEEEEECCchhhHHHHHHHHHH--hCcEEE-EeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQR--LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~--~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
.+++++|+++..+......|.. .|+.+. .+.+..+++..+.. ..++++++|..+...+ ...++..+++..
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~---g~~l~~~l~~~~-- 75 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMD---GIELVDNILKLY-- 75 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSC---HHHHHHHHHHHC--
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--
Confidence 4799999999988888888863 577766 88999999987754 3478999987764432 234455555432
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++++.......... ....+...++.||+....+...+.+.+.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~-~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 76 PDCSVIFMSGYSDKEYLKA-AIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp TTCEEEEECCSTTTCCC-------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCcHHHHHH-HHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 2234444443332222111 1223566899999999999988877653
No 251
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=94.74 E-value=0.078 Score=49.23 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHh-CcEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~-g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 657 (876)
.+.+++++|+++..+...+..|+.. |+.+ ..+.+..+++..+.... .++++++|..+...+. ..++..++....
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g---~~~~~~lr~~~~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDG---MEFLRHAKLKTR 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTT---CHHHHHHHHHCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCH---HHHHHHHHhcCC
Confidence 4578999999999999999999998 8885 58999999998877642 5889999987755432 234455554332
Q ss_pred CCCceEEEEecc-cCccccCCCCCCCCCCceeccCCchH
Q 002821 658 GFQSKLFLLANS-ISSSRANTSTDGVSIPSVIMKPLRSS 695 (876)
Q Consensus 658 ~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~kp~~~~ 695 (876)
..++++... .............+...++.||+...
T Consensus 88 ---~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 123 (145)
T 3kyj_B 88 ---AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTV 123 (145)
T ss_dssp ---CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC
T ss_pred ---CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHH
Confidence 333333321 11111100111225567899999843
No 252
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=94.72 E-value=0.12 Score=45.85 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=77.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......++..|+.+..+.+..+++..+... .++++++|..+...+ ...+...+++. ...
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~---~~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGD---GIEFIRDLRQW---SAV 73 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEE---HHHHHHHHHTT---CCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHhC---CCC
Confidence 4689999999999999999999999999999999988776543 468888887664332 23345555531 223
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
++++++........... ...+...++.||+....+...+...+
T Consensus 74 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 74 PVIVLSARSEESDKIAA-LDAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp CEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHH-HhcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 44444433222111111 11245679999999999998887765
No 253
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=94.69 E-value=0.11 Score=53.61 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=83.6
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
...+++++|+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..+++. .
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~---G~~l~~~lr~~---~ 107 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFD---GGDVVQRLRKN---S 107 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHH---HHHHHHHHHTT---C
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHcC---C
Confidence 457899999999999999999999999999999999999887654 478999997764422 33455566652 2
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
..++++++........... -..+...++.||+....+...+...+..
T Consensus 108 ~~~iI~lt~~~~~~~~~~a-~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 108 ALPIIVLTARDTVEEKVRL-LGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp CCCEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCHHHHHHH-HHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 2344444433222111111 1125567999999999999999988854
No 254
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=94.60 E-value=0.02 Score=67.40 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEeeCCCCChhhHhhhccc
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTP 502 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~p 502 (876)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 4889999999999998766644
No 255
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=94.59 E-value=0.066 Score=58.85 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHhhccC---CCeEEEEE
Q 002821 392 DPGRFRQIITNLMGNSIKFTE---KGHIFVTV 420 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT~---~G~I~v~v 420 (876)
|+..+..++.-||+||+...- ...|.|.+
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i 58 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEV 58 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEE
Confidence 677899999999999999532 23455544
No 256
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=94.39 E-value=0.31 Score=42.01 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=78.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeCCC-CCCCHHHHHHHHHhhccccccccc
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM-PEMDGFEATKIIREMEHNFNNRIR 808 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi~M-P~mdG~e~~~~IR~~~~~~~~~~~ 808 (876)
+.||+|-.|-..--.++.++....|.++....- ...-.-|+|+|...+ |+ .|++
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~-------~~e~~AdlIfCEYlLLPe--------~ifS---------- 67 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQY-------KQELSADLVVCEYSLLPR--------EIRS---------- 67 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSC-------CCCTTEEEEEEEGGGSCT--------TCCC----------
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEecccc-------CCcccceeEEEeeecChH--------HhcC----------
Confidence 578999999888888888888788888876542 234568999999643 32 1221
Q ss_pred ccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCCC
Q 002821 809 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 870 (876)
Q Consensus 809 ~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~~ 870 (876)
.+.....-+|++-.--+++...+.++-|+. |+..|+++.-|-.+|+.|+..
T Consensus 68 ----------~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 68 ----------PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp ----------CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 122334456666666778899999999999 999999999999999988753
No 257
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=94.32 E-value=0.055 Score=53.39 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=75.4
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 579 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 579 ~~g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
+.+.+++++|+++..+......|...|+.+..+.+..+++ ...++++++|..+...+ .. +...++...
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------~~~~dlvl~D~~mp~~~---g~-l~~~~~~~~-- 77 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------DVPVDVVFTSIFQNRHH---DE-IAALLAAGT-- 77 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------SSCCSEEEEECCSSTHH---HH-HHHHHHHSC--
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------CCCCCEEEEeCCCCccc---hH-HHHHHhccC--
Confidence 5578999999999999999999999999998887766544 24678999998764332 12 334444332
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
...++++++........... ...+...++.||+....+...+..++
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a-~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 78 PRTTLVALVEYESPAVLSQI-IELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp TTCEEEEEECCCSHHHHHHH-HHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHHHHH-HHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 23444444433222111111 11255679999999999988887665
No 258
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=94.28 E-value=0.21 Score=47.56 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHhC--cEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCC
Q 002821 580 QGMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 657 (876)
Q Consensus 580 ~g~~~lvvd~~~~~~~v~~~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 657 (876)
+..+++++|+++..+......|+..| ..+..+.+..+++..+... .++++++|..+...+ ...++..+++...
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~l~~~lr~~~~ 98 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLN---GIEALKLIMKKAP 98 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHHSC
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC
Confidence 34689999999999999999999886 3355789999999887654 478999997765432 3344556665432
Q ss_pred CCCceEEEEecccCccc-cCCCCCCCCCCceeccCCc---------hHHHHHHHHHHhcC
Q 002821 658 GFQSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLR---------SSMLAASLQRAMGV 707 (876)
Q Consensus 658 ~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~kp~~---------~~~l~~~l~~~l~~ 707 (876)
..++++........ ........+...++.||+. ...+...+++.+..
T Consensus 99 ---~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 99 ---TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp ---CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred ---ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 33444433222211 1001112256689999998 56777777777654
No 259
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=94.23 E-value=0.028 Score=65.76 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=33.8
Q ss_pred EEEEEeeCCCCChhhHhhhcccccccCC------------CCCCCCCcccccHHHHHHHHHHcCCEEEEEEeC
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 541 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~pF~q~~~------------s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~~ 541 (876)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.++ -++.|.|..
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va----dkV~V~Sr~ 143 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA----DKVTVRTRA 143 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE----EEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC----CeEEEEECC
Confidence 4899999999999997765544322110 01112345689987555543 245666554
No 260
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=94.16 E-value=0.14 Score=51.53 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=77.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++..+......|+..|+.+..+.+..+++..+... .+++++ + +......++..++.. ....
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----l---p~~~g~~~~~~lr~~--~~~~ 69 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----V---SDKNALSFVSRIKEK--HSSI 69 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----E---CCTTHHHHHHHHHHH--CTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----e---CCCCHHHHHHHHHhC--CCCC
Confidence 3689999999999999999999999999999999999887654 456666 1 112233456666655 2134
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCC-chHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~l~~ 707 (876)
++++++........... ...+...++.||+ ....+...+..++..
T Consensus 70 ~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred cEEEEECCCCHHHHHHH-HHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 44444433222111111 1125567999999 999999999988754
No 261
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=94.14 E-value=0.23 Score=45.48 Aligned_cols=115 Identities=14% Similarity=0.214 Sum_probs=76.7
Q ss_pred EEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCce
Q 002821 583 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 662 (876)
Q Consensus 583 ~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (876)
+++++|+++..+......++.. +.+..+.+..+++..+... .++++++|..+...+ ...++..+++.. ....
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~l~~~~--~~~~ 74 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRT---GVDFLTEVRERW--PETV 74 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSC---HHHHHHHHHHHC--TTSE
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHHhC--CCCc
Confidence 6899999999998888888875 8899999999999887654 478999987765432 233455555532 1234
Q ss_pred EEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 663 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 663 ~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
+++++...............+...++.||+....+...+..++
T Consensus 75 ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 117 (139)
T 2jk1_A 75 RIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAA 117 (139)
T ss_dssp EEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHH
Confidence 4444433222111111111135679999999999998887765
No 262
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=94.06 E-value=0.11 Score=46.30 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=77.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......+...|+.+..+.+..+++..+... .++++++|..+...+. ..++..+++... ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g---~~~~~~l~~~~~--~~ 76 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDG---LALLKQIKQRHP--ML 76 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHH---CSTHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCH---HHHHHHHHhhCC--CC
Confidence 4689999999999999999999999999999999998877543 4688888876543221 112344444321 22
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
++++++......... ..-..+...++.||+....+...+..++.
T Consensus 77 ~ii~~s~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 77 PVIIMTAHSDLDAAV-SAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CCCCBCCSTTSTTTT-SSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHH-HHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 333333322221111 11223566799999999999998887653
No 263
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.94 E-value=0.21 Score=55.32 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=79.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
+++++||+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..++.... ..
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~d---G~ell~~lr~~~~--~~ 73 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVN---GLEILKWIKERSP--ET 73 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhhCC--CC
Confidence 3689999999999999999999999999999999999988653 478999998765432 2334555555321 23
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHh
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 705 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l 705 (876)
++++++........... -..+...++.||+....+...+.+++
T Consensus 74 pvIvlT~~~~~~~~~~a-~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 74 EVIVITGHGTIKTAVEA-MKMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp EEEEEEETTCHHHHHHH-HTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHH-HhcCceEEecCCCCHHHHHHHHHHHH
Confidence 44444332222111111 11256689999999999888776654
No 264
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.93 E-value=0.14 Score=51.67 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=81.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
.+++++|+++..+......|+..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++.. . ..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~--~-~~ 76 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMS---GTDVCKQLRAR--S-SV 76 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHH--C-SC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCC---HHHHHHHHHcC--C-CC
Confidence 5799999999999999999999999999999999999887653 478899987764332 23455556553 1 33
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
++++++........... -..+...++.||+....+...+..++..
T Consensus 77 ~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 77 PVIMVTARDSEIDKVVG-LELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp SEEEEECCHHHHHHHHH-HHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 44444433221111111 1124557899999999999999988854
No 265
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.54 E-value=0.18 Score=50.55 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=79.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCCc
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 661 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (876)
++++++|+++..+......|+..| .+..+.+..+++..+ ..++++++|..+...+ ...++..++... ...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~---g~~~~~~lr~~~--~~~ 72 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYS---GYEICRMIKETR--PET 72 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSB---HHHHHHHHHHHC--TTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 479999999999999999999999 999999999988765 4578999998765432 234455565543 233
Q ss_pred eEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 662 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 662 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
++++++........... -..+...++.||+....+...+..++..
T Consensus 73 ~ii~lt~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 73 WVILLTLLSDDESVLKG-FEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEEEESCCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 44444433221111111 1124567999999999999999888753
No 266
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=93.49 E-value=0.3 Score=48.66 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=81.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhC-cEE-EEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g-~~v-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......|+..| +.+ ..+.+..+++..+... .++++++|..+...+ ...++..+++..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~-- 77 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMN---GLETLDKLREKS-- 77 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSC---HHHHHHHHHHSC--
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHHhC--
Confidence 3689999999999999999999874 887 7899999999887653 478999998765432 234555666542
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 707 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~~ 707 (876)
...++++++........... ...+...++.||+....+...+...+..
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 78 LSGRIVVFSVSNHEEDVVTA-LKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp CCSEEEEEECCCCHHHHHHH-HHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 22344444433222111111 1125667999999999999999888753
No 267
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=92.77 E-value=0.33 Score=53.97 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=80.2
Q ss_pred cEEEEECCchhhHHHHHHHHHH-hCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.++++|||++..+......|+. .|..+..+.+..+++..+... ..++++++|..+...++ ..++..++... .
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG---~ell~~l~~~~---~ 76 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDG---LAFLRHASLSG---K 76 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCH---HHHHHHHHHHT---C
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---C
Confidence 6899999999999999999988 588999999999999887652 35899999988765443 33445555432 2
Q ss_pred ceEEEEecccCcc-----ccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 661 SKLFLLANSISSS-----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 661 ~~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...+++.+..... .........+...++.||+....+...+.+.+.
T Consensus 77 ~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~ 127 (400)
T 3sy8_A 77 VHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNA 127 (400)
T ss_dssp EEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHH
Confidence 2233333333221 000011222455789999999999998887654
No 268
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=92.77 E-value=0.2 Score=55.54 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=75.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
..++|+||+++..+......|+..|+.|..+.+..+++..+... .++++++|..+...+ ...++..+++.. ..
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~---G~~~~~~lr~~~--~~ 77 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQID---GLELIRRIRQTA--SE 77 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSC---THHHHHHHHHTT--CC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCC---HHHHHHHHHhhC--CC
Confidence 36899999999999999999999999999999999999988754 478999998765433 234555665542 12
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCC-chHHHHHHHHHH
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRA 704 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~-~~~~l~~~l~~~ 704 (876)
.++++++........... -..+...++.||+ ....+...+.+.
T Consensus 78 ~pii~lt~~~~~~~~~~a-~~~ga~~yl~KP~~~~~~l~~~i~~~ 121 (394)
T 3eq2_A 78 TPIIVLSGAGVMSDAVEA-LRLGAADYLIKPLEDLAVLEHSVRRA 121 (394)
T ss_dssp CCEEEC---CHHHHHHHH-HHHTCSEECCSSCSCTHHHHHHHHHH
T ss_pred CcEEEEEcCCCHHHHHHH-HhcChhhEEECCCChHHHHHHHHHHH
Confidence 333333322111111111 1124567899999 466665554433
No 269
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=92.68 E-value=0.13 Score=52.52 Aligned_cols=50 Identities=30% Similarity=0.428 Sum_probs=30.0
Q ss_pred EEEEEeeCCCCChhh-------Hhhhccccccc---CCCCCCCC-CcccccHHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEA-------QSRIFTPFMQV---GPSISRTH-GGTGIGLSISKYLVGR 530 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~-------~~~iF~pF~q~---~~s~~~~~-~GtGLGLsI~k~lv~~ 530 (876)
.|+|.|+|.|||.+. .+-+|...... +....... |=-|.|++.+..|.+.
T Consensus 73 ~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~ 133 (226)
T 4emv_A 73 SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSW 133 (226)
T ss_dssp CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEE
T ss_pred eEEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccc
Confidence 389999999999987 66667432211 11111222 3378999988877643
No 270
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=92.50 E-value=0.13 Score=52.27 Aligned_cols=49 Identities=33% Similarity=0.541 Sum_probs=28.0
Q ss_pred EEEEeeCCCCChhhH--------hhhccccccc---CCCCCCCCCc-ccccHHHHHHHHHH
Q 002821 482 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 530 (876)
Q Consensus 482 i~V~DtG~GI~~e~~--------~~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~ 530 (876)
|+|+|+|.|||.+.. +-+|...... +.......+| -|.||+.+..|.+.
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~ 129 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 129 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccc
Confidence 899999999999864 3455322111 1111122233 78999988887653
No 271
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=90.93 E-value=1.1 Score=45.02 Aligned_cols=120 Identities=8% Similarity=0.097 Sum_probs=75.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHH-hCcEEEE-eCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCC
Q 002821 581 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEV-VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 658 (876)
Q Consensus 581 g~~~lvvd~~~~~~~v~~~~l~~-~g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 658 (876)
..+++++|+++..+......|+. .|+.+.. +.+..+++.... ....++++++|..+...+ ...++..+++. ..
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~-~~~~~dlvllD~~mp~~~---G~~~~~~lr~~-~~ 81 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP-ESRSIQMLVIDYSRISDD---VLTDYSSFKHI-SC 81 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS-GGGGCCEEEEEGGGCCHH---HHHHHHHHHHH-HC
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh-hccCCCEEEEeCCCCCCC---HHHHHHHHHHh-hC
Confidence 46899999999999999999984 6888855 344444443211 234688999998765432 33455555552 11
Q ss_pred CCceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 659 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 659 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
...++++++........... ...+...++.||+....+...+...+.
T Consensus 82 ~~~~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 82 PDAKEVIINCPQDIEHKLLF-KWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp TTCEEEEEEECTTCCHHHHT-TSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCcchhHHHHH-HHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 22344444433222211111 122556899999999999999988875
No 272
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=90.55 E-value=0.27 Score=49.68 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=78.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHhC-cE-EEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 659 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~~~g-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (876)
++++++|+++..+......|+..| +. +..+.+..+++..+... .++++++|..+...+ ...++..++... .
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~--~ 74 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGN---GIELCRDLLSRM--P 74 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEE---HHHHHHHHHHHC--T
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCC---HHHHHHHHHHhC--C
Confidence 479999999999999999999887 88 45799999999887653 478899987765432 234455555532 1
Q ss_pred CceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 002821 660 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 706 (876)
Q Consensus 660 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~~l~ 706 (876)
..++++++........... -..+...++.||+....+...+..++.
T Consensus 75 ~~~ii~lt~~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 75 DLRCLILTSYTSDEAMLDA-ILAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp TCEEEEGGGSSSHHHHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 2344444332221111111 112456789999999999999888764
No 273
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=90.11 E-value=0.48 Score=51.32 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=76.7
Q ss_pred cEEEEECCchhhHHHHHHHHH-HhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCcchhHHHHHHHhhcCCCCC
Q 002821 582 MKALVVDPRPIRAKVSRYHIQ-RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 660 (876)
Q Consensus 582 ~~~lvvd~~~~~~~v~~~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (876)
.++++||+++..+......|. ..|+.+..+.+..+++..+... .++++++|..+...+ ...++..++.......
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~---G~~~~~~l~~~~~~~~ 93 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVD---GLTLLAAYRGNPATRD 93 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSB---HHHHHHHHTTSTTTTT
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHhcCcccCC
Confidence 469999999998888888886 4699999999999999887653 468899988765433 2345566665432233
Q ss_pred ceEEEEecccCccccCCCCCCCCCCceeccCCchHHHHHHHHH
Q 002821 661 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 703 (876)
Q Consensus 661 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~l~~~l~~ 703 (876)
.++++++............ ..+...++.||+....+...+..
T Consensus 94 ~~ii~~s~~~~~~~~~~a~-~~Ga~~~l~Kp~~~~~l~~~v~~ 135 (358)
T 3bre_A 94 IPIIVLSTKEEPTVKSAAF-AAGANDYLVKLPDAIELVARIRY 135 (358)
T ss_dssp SCEEEEESSCCHHHHHHHH-HTTCSEEEESCCCHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHH-hcChheEeeccCCHHHHHHHHHH
Confidence 4444444332221111111 12566899999998887766553
No 274
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=90.11 E-value=0.36 Score=48.07 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHhhcc---CCCeEEEEE
Q 002821 392 DPGRFRQIITNLMGNSIKFT---EKGHIFVTV 420 (876)
Q Consensus 392 D~~rl~qIl~NLl~NAiKfT---~~G~I~v~v 420 (876)
++..+..++.-||.||+... ....|.|.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i 59 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI 59 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE
Confidence 56778888888888888753 234566654
No 275
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=89.88 E-value=1.5 Score=45.03 Aligned_cols=82 Identities=20% Similarity=0.083 Sum_probs=60.9
Q ss_pred HHHHHHhHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHhhcccccccccccccchhh
Q 002821 744 VAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIREMEHNFNNRIRRGEVSIEA 816 (876)
Q Consensus 744 vl~~~L~~~g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~MP~md-----G~e~~~~IR~~~~~~~~~~~~g~~~~~~ 816 (876)
-..+.|.+.|+.|. |++|...|-.+.. -.+++| |.+-.|.-. -+++++.|++.
T Consensus 126 ~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~----------------- 185 (265)
T 1wv2_A 126 KAAEQLVKDGFDVMVYTSDDPIIARQLAE--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE----------------- 185 (265)
T ss_dssp HHHHHHHTTTCEEEEEECSCHHHHHHHHH--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHH--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc-----------------
Confidence 35566777899977 6777777766542 357777 776666332 27888888862
Q ss_pred hccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 817 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 817 ~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
..+|||+=-+-...++...|++.|+|+.+
T Consensus 186 ------~~vPVI~eGGI~TPsDAa~AmeLGAdgVl 214 (265)
T 1wv2_A 186 ------AKVPVLVDAGVGTASDAAIAMELGCEAVL 214 (265)
T ss_dssp ------CSSCBEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred ------CCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 35899987777889999999999999986
No 276
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=89.58 E-value=0.46 Score=52.93 Aligned_cols=67 Identities=21% Similarity=0.480 Sum_probs=39.4
Q ss_pred EEEEEeeCCCCChhhHhh--------hccccccc---CCCCCCCCCc-ccccHHHHHHHHHHcCCEEEEEEeC-CCcEEE
Q 002821 481 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKGEIGFVSIP-NIGSTF 547 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~--------iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~mgG~I~v~S~~-g~GstF 547 (876)
.|+|+|+|.|||.+..+. +|....-. +....+..|| .|.|.+.|..|-+. +.|+... ..|-.+
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y 174 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKY 174 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEE
Confidence 489999999999886443 56443221 1122223344 79999998877654 3444443 245455
Q ss_pred EEEE
Q 002821 548 TFTA 551 (876)
Q Consensus 548 ~~~l 551 (876)
....
T Consensus 175 ~q~f 178 (418)
T 1pvg_A 175 VQKW 178 (418)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 277
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=89.57 E-value=0.49 Score=52.38 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=30.4
Q ss_pred EEEEEeeCCCCChhh--------Hhhhccccccc---CCCCCCCCCc-ccccHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEA--------QSRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVG 529 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~ 529 (876)
.|+|.|+|.|||.+. .+-+|....-. +....+..+| .|.||+.+..+-+
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~ 147 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 147 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEecc
Confidence 489999999999986 44466532211 1111122333 7999998887743
No 278
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=89.57 E-value=3.1 Score=39.79 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhh
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREM 799 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~ 799 (876)
.++||+. |-+..-..++..+|+..||+|... ...++.++.+. ...+|+|.+-..|.. +. --++.+.+|+.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~-~~~~diV~lS~~~~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV-QEDVDVIGVSILNGAHLHLMKRLMAKLREL 96 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH-HTTCSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-hcCCCEEEEEeechhhHHHHHHHHHHHHhc
Confidence 4589988 888999999999999999999854 35566666664 467999999887753 11 12233444431
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 800 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
...+++|++ -+....++...+.+.|+|++...=-+..+....+.+++
T Consensus 97 ---------------------g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 97 ---------------------GADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp ---------------------TCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred ---------------------CCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 012466654 45556666667789999986654445555555555543
No 279
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=85.54 E-value=0.38 Score=49.47 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=35.7
Q ss_pred EEEEEeeCCCCChhhHhhhccc--------cc---ccCCCCCCCCCcccccHHHHHHHHHHcCCEEEEEEe
Q 002821 481 IVSVEDTGQGIPLEAQSRIFTP--------FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 540 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~~~~iF~p--------F~---q~~~s~~~~~~GtGLGLsI~k~lv~~mgG~I~v~S~ 540 (876)
.|+|.|||+||+++++..-+.. |. +.+.......|-.|+|++-|-. ..-++.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm----VAdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL----VSNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG----TEEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec----cCCEEEEEEc
Confidence 5899999999999998876532 21 1111112234678999986543 2356677766
No 280
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=83.95 E-value=1 Score=49.89 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=25.8
Q ss_pred EEEEeeCCCCChhhH--------hhhccccccc---CCCCCCCCCc-ccccHHHHHHHHHHc
Q 002821 482 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRM 531 (876)
Q Consensus 482 i~V~DtG~GI~~e~~--------~~iF~pF~q~---~~s~~~~~~G-tGLGLsI~k~lv~~m 531 (876)
|+|.|+|.|||.+.. +-+|...... +.......+| -|.|++.|..|-+.+
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~l 145 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKV 145 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCeE
Confidence 899999999999874 3455332211 1111122334 699999988886543
No 281
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=78.41 E-value=7.3 Score=40.08 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=63.7
Q ss_pred HHHHHhHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHHhhcccccccccccccchhhh
Q 002821 745 AAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRRGEVSIEAY 817 (876)
Q Consensus 745 l~~~L~~~g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 817 (876)
..+.|.+.|+.|. |..|...|-.+.. -.+++| |.+-.|.-.| .+.++.|++.
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~ak~l~~--~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~------------------ 174 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLAKRLAA--LGTATV-MPLAAPIGSGWGVRTRALLELFARE------------------ 174 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHHHHHHH--HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT------------------
T ss_pred HHHHHHHCCCEEeeccCCCHHHHHHHHh--cCCCEE-EecCccCcCCcccCCHHHHHHHHHh------------------
Confidence 4566667899977 6667665544432 346766 8877765554 4557777752
Q ss_pred ccCCCCC-CcEEEEcCCCCHHhHHHHHHcCCCeeE-----eCCCCHHHHHHHH
Q 002821 818 ENVSNFH-VPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 864 (876)
Q Consensus 818 ~~~~~~~-~pIIalTa~~~~~~~~~~~~aG~d~yl-----~KP~~~~~L~~~l 864 (876)
... +|||+=-+-...++...+++.|+|+.+ .|--++....+++
T Consensus 175 ----~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af 223 (268)
T 2htm_A 175 ----KASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAF 223 (268)
T ss_dssp ----TTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHH
T ss_pred ----cCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 124 899987777888999999999999985 4533444444433
No 282
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=75.02 E-value=14 Score=37.40 Aligned_cols=88 Identities=7% Similarity=0.014 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC------CCCCCHHHHHHHHHhhcccccccccccc
Q 002821 739 NVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ------MPEMDGFEATKIIREMEHNFNNRIRRGE 811 (876)
Q Consensus 739 ~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 811 (876)
|....-+...+++.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~------------- 179 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ--KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSH------------- 179 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHT-------------
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh--CCCCEEEecCccCCCCCcCCCCCHHHHHHHHH-------------
Confidence 3333444555567787655 4677778777653 46899864221 234456888888875
Q ss_pred cchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 812 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 812 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
. ++|+|+-.+-.+.++..+++++|+|+++.
T Consensus 180 ----------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 180 ----------A-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp ----------T-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ----------c-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 58999999888999999999999999864
No 283
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=73.55 E-value=6.6 Score=47.25 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=71.0
Q ss_pred cEEEEECCch-hh-------HHHHHHHHHHhCcEEEEeCCHHHHHHHHhcCCCcceEEEeeccccccCc-chhHHHHHHH
Q 002821 582 MKALVVDPRP-IR-------AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT-SVSTLFVNNL 652 (876)
Q Consensus 582 ~~~lvvd~~~-~~-------~~v~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~ 652 (876)
+++|+||++. .. .......|+..|+.|..+.+..+++..+... ..++.+++|..+...+. .....++..+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4789999998 66 7888889999999999999999999987753 24788999876633111 1223356677
Q ss_pred hhcCCCCCceEEEEecccCccccCCCC-CCCCCCceeccCCchHH
Q 002821 653 RKLGCGFQSKLFLLANSISSSRANTST-DGVSIPSVIMKPLRSSM 696 (876)
Q Consensus 653 ~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~kp~~~~~ 696 (876)
++... ..++++++.... ...+... -..+...++.||.....
T Consensus 80 R~~~~--~iPIi~lTa~~~-~~~d~~~~l~~gaddyi~kpf~~~e 121 (755)
T 2vyc_A 80 HERQQ--NVPVFLLGDREK-ALAAMDRDLLELVDEFAWILEDTAD 121 (755)
T ss_dssp HHHST--TCCEEEEECHHH-HHHTCSHHHHHHCSEEEETTTSCHH
T ss_pred HHhCC--CCCEEEEecCCc-chhhccHhHhhcCCceEeCCCCCHH
Confidence 76532 334444433211 0011110 11244578999997776
No 284
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=72.56 E-value=26 Score=36.04 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=72.3
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhh
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREM 799 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~ 799 (876)
+++||++ |-+..-..++..+|+..||+|... ....+.++.+. .+.+|+|.+-..|+. ++. -++.+.+|+.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~-~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQ-KEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHH-HHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Confidence 4688888 777888999999999999998743 34455555553 467999999987764 333 2345566542
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhCC
Q 002821 800 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 869 (876)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~~ 869 (876)
...+||++--+...++. +-+.|+|.|..-+ .+....+.+++.
T Consensus 202 ----------------------~~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~~ 243 (258)
T 2i2x_B 202 ----------------------GIKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAIIA 243 (258)
T ss_dssp ----------------------TCCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHHT
T ss_pred ----------------------CCCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHHc
Confidence 22477776555444332 3478998887655 344444444443
No 285
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=69.63 E-value=22 Score=32.72 Aligned_cols=110 Identities=12% Similarity=-0.006 Sum_probs=69.6
Q ss_pred eCCHHHHHHHHHHHhHcCCEEEE---EcCHHHHHHHhCCCCCccEEEEeCCCCCC-C-HHHHHHHHHhhccccccccccc
Q 002821 736 DDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEM-D-GFEATKIIREMEHNFNNRIRRG 810 (876)
Q Consensus 736 dDn~~n~~vl~~~L~~~g~~v~~---a~~g~eA~~~~~~~~~~DlilmDi~MP~m-d-G~e~~~~IR~~~~~~~~~~~~g 810 (876)
|-+..-..++..+|+..||+|.. ....++.++.+. .+.+|+|.+-..|..- . --++.+.+|+..
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~-~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g---------- 82 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI-ETKADAILVSSLYGQGEIDCKGLRQKCDEAG---------- 82 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH-HHTCSEEEEEECSSTHHHHHTTHHHHHHHTT----------
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-hcCCCEEEEEecCcCcHHHHHHHHHHHHhcC----------
Confidence 44556678899999999999983 456777777764 4679999998877421 1 122344554421
Q ss_pred ccchhhhccCCCCCCcEEEEcCCCC-HH----hHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 811 EVSIEAYENVSNFHVPILAMTADVI-QA----TYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 811 ~~~~~~~~~~~~~~~pIIalTa~~~-~~----~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
..+++|++=-+-.. .+ ....+.++|+|.|..---+..+....+.+.
T Consensus 83 -----------~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 83 -----------LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp -----------CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred -----------CCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 12466654332211 12 245688999999987666777776666544
No 286
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=68.26 E-value=25 Score=35.54 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC------CCCCCHHHHHHHHHhhcccccccccccc
Q 002821 739 NVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ------MPEMDGFEATKIIREMEHNFNNRIRRGE 811 (876)
Q Consensus 739 ~~n~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~g~ 811 (876)
|....-+...+++.|..+. .+.+.++|..... ..+|+|..-.. .+...++++++++++
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~------------- 179 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR--LGADIIGTTMSGYTTPDTPEEPDLPLVKALHD------------- 179 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH--TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh--CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHh-------------
Confidence 3333444555567787655 4567777777653 45898853221 123446888888875
Q ss_pred cchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 812 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 812 ~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
. ++|+|+-.+-.+.++..+++++|+|+++.
T Consensus 180 ----------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 180 ----------A-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp ----------T-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ----------c-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 58999999888899999999999999863
No 287
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=66.37 E-value=23 Score=35.40 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=66.5
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEE--eCCCC-CCCH-HHHHHHHH
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFM--DIQMP-EMDG-FEATKIIR 797 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~Dlilm--Di~MP-~mdG-~e~~~~IR 797 (876)
+.+||+. |-+..-..++..+|+..||+|..-. ..++-++.+. .+.+|+|.+ -..|. .|+. -+..+.+|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~-~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAA-KHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHH-HTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHH-HcCCCEEEEEchhcccCcHHHHHHHHHHHH
Confidence 4588888 7788888999999999999998642 3455556664 467999999 87764 2222 23444555
Q ss_pred hhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCC
Q 002821 798 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 854 (876)
Q Consensus 798 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 854 (876)
+.. ...++||++--+-..++ -|.+.|+|.|-.-.
T Consensus 171 ~~~--------------------~~~~v~v~vGG~~~~~~---~a~~iGad~~~~dA 204 (215)
T 3ezx_A 171 EEK--------------------LRDSVKCMFGGAPVSDK---WIEEIGADATAENA 204 (215)
T ss_dssp HTT--------------------CGGGSEEEEESSSCCHH---HHHHHTCCBCCSSH
T ss_pred HcC--------------------CCCCCEEEEECCCCCHH---HHHHhCCeEEECCH
Confidence 421 01257777655545443 34567999986543
No 288
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=65.95 E-value=9.4 Score=47.98 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=32.0
Q ss_pred EEEEEeeCCCCChhh--------HhhhcccccccC---CCCCCCCCc-ccccHHHHHHHHHH
Q 002821 481 IVSVEDTGQGIPLEA--------QSRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGR 530 (876)
Q Consensus 481 ~i~V~DtG~GI~~e~--------~~~iF~pF~q~~---~s~~~~~~G-tGLGLsI~k~lv~~ 530 (876)
.|+|.|+|.|||-+. .+-||......+ ....+..|| .|.|.+.|..|-+.
T Consensus 94 sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 94 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 389999999999653 344565543321 222223344 69999999888653
No 289
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=65.34 E-value=36 Score=33.17 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=50.8
Q ss_pred ChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeeeehHHHHHHHHHHh
Q 002821 91 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 168 (876)
Q Consensus 91 ~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~~v~~l~~~~l~~~ 168 (876)
+...|+...+|+.+|+.+++.|+.-..++.+.+.+..|++..+. .+.|++++.++++.|.+. +..+
T Consensus 94 ~~~~r~~f~~a~~~~~~~is~~~~~~~~g~~~i~ia~pi~~~~g-----------~~~Gvl~~~i~l~~l~~~-~~~~ 159 (217)
T 4dah_A 94 NLADRSFFIKAKETKKTVISDSYSSRITGQPIFTICVPVLDSKR-----------NVTDYLVAAIQIDYLKNL-INLL 159 (217)
T ss_dssp BCTTSHHHHHHHHHCSCEECCCEECTTTCSEEEEEEEEEECTTS-----------CEEEEEEEEEEHHHHHHH-HHHH
T ss_pred CcchhHHHHHHHhcCCcEEeceEEcCCCCCEEEEEEEEEECCCC-----------CEEEEEEEEEcHHHHHHH-HHhc
Confidence 34568889999999999999998754467788899999997321 246999999999987654 4444
No 290
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=64.05 E-value=22 Score=35.14 Aligned_cols=102 Identities=20% Similarity=0.122 Sum_probs=66.2
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCccEEEEeCCCCC-CCH-HHHHHHHHhh
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREM 799 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~DlilmDi~MP~-mdG-~e~~~~IR~~ 799 (876)
+.+||++ |-+..-..++..+|+..||+|.... ..++-++.+. .+.+|+|.+-..|+. ++. -++.+.+|+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 166 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK-KYQPDIVGMSALLTTTMMNMKSTIDALIAA 166 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH-HHCCSEEEEECCSGGGTHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHhc
Confidence 3578888 7788889999999999999998643 3344445553 457999999987764 222 2344555542
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCC
Q 002821 800 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 854 (876)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP 854 (876)
. ..+++||++--+...++ -+.+.|+|.|..-.
T Consensus 167 ~--------------------~~~~~~v~vGG~~~~~~---~~~~~gad~~~~da 198 (210)
T 1y80_A 167 G--------------------LRDRVKVIVGGAPLSQD---FADEIGADGYAPDA 198 (210)
T ss_dssp T--------------------CGGGCEEEEESTTCCHH---HHHHHTCSEECSSH
T ss_pred C--------------------CCCCCeEEEECCCCCHH---HHHHcCCeEEECCH
Confidence 1 01247777655554433 24567999876533
No 291
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=62.37 E-value=13 Score=37.70 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCC------HHhHHHHHHcCCCeeEeCCCCHH
Q 002821 824 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAE 858 (876)
Q Consensus 824 ~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~ 858 (876)
++||++++.... .+..+.|.++|+|..+.-....+
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~ 120 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVF 120 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGG
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChh
Confidence 579998884222 57888999999999988544443
No 292
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=61.92 E-value=19 Score=35.75 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=50.9
Q ss_pred CCCeEEEEe------CCHHHHHHHHHHHhHcCCEEEEE----cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH
Q 002821 728 LGRKILIVD------DNNVNLKVAAAGLKRYGAAVVCV----ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIR 797 (876)
Q Consensus 728 ~~~~ILvVd------Dn~~n~~vl~~~L~~~g~~v~~a----~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR 797 (876)
.+++|++|+ |...+......+|++.|+++... .+.++..+.+. ..|.|++ |+-+-+.+.+.++
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~---~ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR---KNDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH---HSSEEEE----CCSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH---hCCEEEE----CCCCHHHHHHHHH
Confidence 357999997 55568888899999999999888 47776666663 3688885 8888888888887
Q ss_pred hh
Q 002821 798 EM 799 (876)
Q Consensus 798 ~~ 799 (876)
+.
T Consensus 99 ~~ 100 (206)
T 3l4e_A 99 RT 100 (206)
T ss_dssp HH
T ss_pred HC
Confidence 63
No 293
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=56.10 E-value=55 Score=33.36 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=48.1
Q ss_pred CChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeeeehHHHHHH
Q 002821 90 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 163 (876)
Q Consensus 90 s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~~v~~l~~~ 163 (876)
.+...|+...+|+.+|+.+++.|+.- ++.+.+.+..|++..+ .+.|++++.++++.|.+.
T Consensus 119 ~d~~~r~w~~~a~~~~~~~~s~p~~~--~~~~~i~~~~pi~~~g------------~~~Gvl~~~i~l~~l~~~ 178 (290)
T 3lib_A 119 LHYDSSDYYQLPKATEKDVLTEPYFY--EGVFMVSYVSPIMKEG------------EFAGIGGVDVSLEYVDEV 178 (290)
T ss_dssp SCTTTSHHHHHHHHHCSCEECCCEEE--TTEEEEEEEEEEEETT------------EEEEEEEEEEEHHHHHHH
T ss_pred CCCCcchHHHHHHHcCCCEEEcCEEe--CCeEEEEEEEEEEECC------------EEEEEEEEEEeHHHHHHH
Confidence 45567899999999999999999873 5678888999998532 346999999999887654
No 294
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=51.61 E-value=5.8 Score=41.02 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=43.1
Q ss_pred CeEEEEeCC--HHHHHHHHHHHhHcCCEEEEEcCHHH--HHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhh
Q 002821 730 RKILIVDDN--NVNLKVAAAGLKRYGAAVVCVERGKK--ATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREM 799 (876)
Q Consensus 730 ~~ILvVdDn--~~n~~vl~~~L~~~g~~v~~a~~g~e--A~~~~~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~ 799 (876)
+|||||+++ +.-...+..+|+..|++|+......- -.+.+ ..||+|+++-... ..+- +.++.|++.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L---~~yDvIIl~d~~~~~l~~-~~~~~L~~y 75 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL---AKQDLVILSDYPAERMTA-QAIDQLVTM 75 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH---HTCSEEEEESCCGGGBCH-HHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH---hcCCEEEEcCCccccCCH-HHHHHHHHH
Confidence 589999998 66778899999999999988764432 11223 2599998873222 2332 445566553
No 295
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=50.60 E-value=15 Score=38.31 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=49.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCC-CCccEEEEeCCCCC-CCHHHHHHHHHh
Q 002821 728 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPE-MDGFEATKIIRE 798 (876)
Q Consensus 728 ~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~-~~~DlilmDi~MP~-mdG~e~~~~IR~ 798 (876)
.+.++.+||-++.....++.-++...-..+...|+.+++..+.++ ..||+||+|----. .+.-++++.|.+
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 356899999999999999988876544455678999998876432 36999999963221 233444455544
No 296
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=49.17 E-value=1.6e+02 Score=32.10 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=64.2
Q ss_pred CeEEEEe----CCHHHHHHHHHHHhHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCC------C-----CCCCHHHH
Q 002821 730 RKILIVD----DNNVNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQ------M-----PEMDGFEA 792 (876)
Q Consensus 730 ~~ILvVd----Dn~~n~~vl~~~L~~~g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~------M-----P~mdG~e~ 792 (876)
-.++++| +.......++.+-+.++..|. .+.+.++|..+.. ...|.|..-+. . .+...+++
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~--aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~a 234 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE--NGADGIKVGIGPGSICTTRIVAGVGVPQITA 234 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH--TTCSEEEECC---------CCSCBCCCHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH--cCCCEEEEeCCCCcCcccccccccchhHHHH
Confidence 3466664 222334555554455577666 4788888887763 45899887321 0 01234566
Q ss_pred HHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 793 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 793 ~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
+..+++.- ....+|||+--+-.+..+..+++.+|++...
T Consensus 235 l~~v~~~~--------------------~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 235 IEKCSSVA--------------------SKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHH--------------------TTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHH--------------------HhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 66665421 1236899998888889999999999999875
No 297
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=48.60 E-value=93 Score=36.80 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=75.4
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhh
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREM 799 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~ 799 (876)
..||++. |.+..-..++..+|+..||+|+.- ...++.++... ++.+|+|.+-..|.. |. .-++.+.+|+.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-e~~adiVglSsl~~~~~~~~~~vi~~L~~~ 674 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAV-EADVHVVGVSSLAGGHLTLVPALRKELDKL 674 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHH-HTTCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH-HcCCCEEEEeeecHhHHHHHHHHHHHHHhc
Confidence 3477776 566677788999999999999864 24567777764 467999998876642 22 23455566552
Q ss_pred cccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHh
Q 002821 800 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 866 (876)
Q Consensus 800 ~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~ 866 (876)
. ..+++|+ +-+-.-..+...+.+.|+|+|..-=-+..++...+.+
T Consensus 675 G---------------------~~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~ 719 (727)
T 1req_A 675 G---------------------RPDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVK 719 (727)
T ss_dssp T---------------------CTTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHH
T ss_pred C---------------------CCCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHH
Confidence 1 1244444 4443444567778999999999865566666555543
No 298
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=48.43 E-value=76 Score=30.93 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=63.9
Q ss_pred EEEEeCCH--HHHHHHHHHHhHcCCEEEEE----cCHHHHHHHhCCCCCccEEEEeCCCCCC-------CHHHHHHHHHh
Q 002821 732 ILIVDDNN--VNLKVAAAGLKRYGAAVVCV----ERGKKATELLMPPHQFDACFMDIQMPEM-------DGFEATKIIRE 798 (876)
Q Consensus 732 ILvVdDn~--~n~~vl~~~L~~~g~~v~~a----~~g~eA~~~~~~~~~~DlilmDi~MP~m-------dG~e~~~~IR~ 798 (876)
.+++-+.+ .....+...++++|..+... .+..+.++.+. ....|.|-++ |+. .+++.++++|+
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~-~~g~d~i~v~---~g~~g~~~~~~~~~~i~~l~~ 155 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLE-EAGADMLAVH---TGTDQQAAGRKPIDDLITMLK 155 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHH-HHTCCEEEEE---CCHHHHHTTCCSHHHHHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-HcCCCEEEEc---CCCcccccCCCCHHHHHHHHH
Confidence 44444443 34455667778888876642 33323333332 2347877766 332 25677777776
Q ss_pred hcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHh
Q 002821 799 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 866 (876)
Q Consensus 799 ~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~ 866 (876)
. .+++||++--+ ...++..++.++|+|+++. +.-++.+-.+.+.+
T Consensus 156 ~----------------------~~~~~i~~~gG-I~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~ 205 (211)
T 3f4w_A 156 V----------------------RRKARIAVAGG-ISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQ 205 (211)
T ss_dssp H----------------------CSSCEEEEESS-CCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHH
T ss_pred H----------------------cCCCcEEEECC-CCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHH
Confidence 3 12577775444 4588999999999998754 55565554444443
No 299
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.16 E-value=90 Score=28.14 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g-~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
|..+.++|.|+..... ++..|+.+...+.. .+.++.. .-...|+|+.-+.-+. +-..++..+|++
T Consensus 30 g~~v~vid~~~~~~~~----~~~~g~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~~~-~n~~~~~~a~~~-------- 95 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDE----LRERGVRAVLGNAANEEIMQLA-HLECAKWLILTIPNGY-EAGEIVASARAK-------- 95 (140)
T ss_dssp TCCEEEEESCHHHHHH----HHHTTCEEEESCTTSHHHHHHT-TGGGCSEEEECCSCHH-HHHHHHHHHHHH--------
T ss_pred CCCEEEEECCHHHHHH----HHHcCCCEEECCCCCHHHHHhc-CcccCCEEEEECCChH-HHHHHHHHHHHH--------
Confidence 4579999999876543 34468887654432 3344443 2246898887543211 123355666654
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.+.++||+... +.+......++|+|..+.
T Consensus 96 --------------~~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 96 --------------NPDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp --------------CSSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred --------------CCCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 23567887764 455666777899997764
No 300
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=43.92 E-value=1.1e+02 Score=36.46 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=74.7
Q ss_pred CeEEEE----eCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC-CC-HHHHHHHHHhhc
Q 002821 730 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GFEATKIIREME 800 (876)
Q Consensus 730 ~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~-md-G~e~~~~IR~~~ 800 (876)
.||++. |.+..-..++..+|+..||+|+.- ...++.++... .+.+|+|.+-..|.. |. .-++.+.+|+..
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~-e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G 683 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAV-DADVHAVGVSTLAAGHKTLVPELIKELNSLG 683 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-HTTCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHH-HcCCCEEEEeeecHHHHHHHHHHHHHHHhcC
Confidence 467775 456667788899999999999864 24567777764 467999998876642 22 234455555521
Q ss_pred ccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhhC
Q 002821 801 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 868 (876)
Q Consensus 801 ~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~~ 868 (876)
..+++|+ +-+-.-..+...+.+.|+|+|...=-+..+....+.+++
T Consensus 684 ---------------------~~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 684 ---------------------RPDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp ---------------------CTTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred ---------------------CCCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 1234443 333233446777889999999985556666665555543
No 301
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=43.27 E-value=73 Score=31.99 Aligned_cols=86 Identities=9% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHHHHhHcCCEEEEEc---CHHHHHHHhCCCCCcc-EEE-EeCCCCCCCH---------HHHHHHHHhhccccccc
Q 002821 741 NLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFD-ACF-MDIQMPEMDG---------FEATKIIREMEHNFNNR 806 (876)
Q Consensus 741 n~~vl~~~L~~~g~~v~~a~---~g~eA~~~~~~~~~~D-lil-mDi~MP~mdG---------~e~~~~IR~~~~~~~~~ 806 (876)
+...+...++++|..+...- +..++++.+.. . .| +|. +.. |+..| ++.++++|+.
T Consensus 121 ~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~-~-~d~~i~~~~~--~G~~g~~~~~~~~~~~~i~~l~~~------- 189 (248)
T 1geq_A 121 HAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDD-M-TTGFVYLVSL--YGTTGAREEIPKTAYDLLRRAKRI------- 189 (248)
T ss_dssp GHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHH-H-CSSEEEEECC--C-------CCCHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHh-c-CCCeEEEEEC--CccCCCCCCCChhHHHHHHHHHhh-------
Confidence 34456667778888766544 34555555532 1 34 543 444 55433 4456666642
Q ss_pred ccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeC
Q 002821 807 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 853 (876)
Q Consensus 807 ~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 853 (876)
.++||++--+-...++..+++++|+|+++.=
T Consensus 190 ----------------~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 190 ----------------CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp ----------------CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ----------------cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 1578887666555599999999999998753
No 302
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=41.71 E-value=22 Score=36.97 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=36.1
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCC------CCHHhHHHHHHcCCCeeEeCCCCHHH
Q 002821 788 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQ 859 (876)
Q Consensus 788 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~~ 859 (876)
+.++.++++|+. ..++||++||-. .......+|.++|+|+.|.--+..++
T Consensus 83 ~~~~~v~~~r~~----------------------~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee 138 (271)
T 3nav_A 83 ICFELIAQIRAR----------------------NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNE 138 (271)
T ss_dssp HHHHHHHHHHHH----------------------CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGG
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 457888888862 236899999732 33667889999999998885454444
No 303
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=41.01 E-value=47 Score=33.15 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=49.5
Q ss_pred ChhchHHHHHHHh--cCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeeeehHHHHHHHHHHh
Q 002821 91 GKEDRENVLRARA--SGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 168 (876)
Q Consensus 91 ~~~~~~~~~~a~~--tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~~v~~l~~~~l~~~ 168 (876)
+...|+....|++ +|+.+++.|+.-..++.+.+.+..|++..+. .+.|++++.++++.+.+ ++..+
T Consensus 94 ~~~~r~~f~~a~~~~~~~~~is~p~~~~~~g~~~i~~~~pi~~~~g-----------~~~Gvl~~~i~l~~l~~-~~~~~ 161 (254)
T 3lif_A 94 DNSDRSYFRYHRANDDHTLLITGPIQSRTSGVWVFVVSRRLETTDG-----------KFFGVVVATIESEYFST-FYKTF 161 (254)
T ss_dssp BCTTSHHHHHHHHCCCCCCEEEEEEECTTTCCEEEEEEEEEECTTC-----------CEEEEEEEEECHHHHHH-HHTTS
T ss_pred CcccHHHHHHHHhCCCCCeEECCceecCCCCcEEEEEEeeeeCCCC-----------CEeEEEEEEECHHHHHH-HHHhc
Confidence 3456788999998 7899999998754467788889999987321 24699999999987655 44443
No 304
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=40.30 E-value=61 Score=32.98 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeEe------CCCCHHHHHHH
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYRE 863 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~------KP~~~~~L~~~ 863 (876)
.+|||+..+-...++..+++++|+|+++. .|+...++.+.
T Consensus 200 ~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 200 TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC------------
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 58999999888889999999999998753 45555555443
No 305
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=38.99 E-value=93 Score=30.60 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=46.2
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEE
Q 002821 758 CVERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 830 (876)
Q Consensus 758 ~a~~g~eA~~~~~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 830 (876)
.+.+..++.+... ...|.|+++-..|. --|++.++++++. ..+||++.
T Consensus 116 sv~t~~~~~~a~~--~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~-----------------------~~~pvia~ 170 (221)
T 1yad_A 116 SVHSLEEAVQAEK--EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR-----------------------ISIPVIAI 170 (221)
T ss_dssp EECSHHHHHHHHH--TTCSEEEEECCC----------CHHHHHHHHHHH-----------------------CCSCEEEE
T ss_pred EcCCHHHHHHHHh--CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh-----------------------CCCCEEEE
Confidence 4567777766553 34798888653322 2356777777652 15798877
Q ss_pred cCCCCHHhHHHHHHcCCCeeE
Q 002821 831 TADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 831 Ta~~~~~~~~~~~~aG~d~yl 851 (876)
-+- ..+...+++++|++++.
T Consensus 171 GGI-~~~nv~~~~~~Ga~gv~ 190 (221)
T 1yad_A 171 GGM-TPDRLRDVKQAGADGIA 190 (221)
T ss_dssp SSC-CGGGHHHHHHTTCSEEE
T ss_pred CCC-CHHHHHHHHHcCCCEEE
Confidence 665 88999999999999875
No 306
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=38.98 E-value=3.3e+02 Score=27.81 Aligned_cols=102 Identities=11% Similarity=-0.006 Sum_probs=65.7
Q ss_pred HHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhcccccccccccccchhhh
Q 002821 742 LKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 817 (876)
Q Consensus 742 ~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 817 (876)
...+....+++|..+. .+.+.+++...+. ...|+|-.- ...... +++.++++++.-
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~--~Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v----------------- 210 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALK--AGAKVIGVNARDLMTLDV-DRDCFARIAPGL----------------- 210 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HTCSEEEEESBCTTTCCB-CTTHHHHHGGGS-----------------
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHH--CCCCEEEECCCccccccc-CHHHHHHHHHhC-----------------
Confidence 3344555667898654 5677777655542 357887664 222222 356677776521
Q ss_pred ccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHhh
Q 002821 818 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSRF 867 (876)
Q Consensus 818 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~~ 867 (876)
...+|+|+-.+-...++..++.++|+|+++. +.-++.+..+.+...
T Consensus 211 ----~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~~ 261 (272)
T 3qja_A 211 ----PSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTA 261 (272)
T ss_dssp ----CTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHTT
T ss_pred ----cccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHhh
Confidence 1258999999988899999999999999976 333555555444433
No 307
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=38.43 E-value=1.7e+02 Score=31.59 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=64.1
Q ss_pred CeEEEEe----CCHHHHHHHHHHHhHc-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCCC------------CCHH
Q 002821 730 RKILIVD----DNNVNLKVAAAGLKRY-GAAVV--CVERGKKATELLMPPHQFDACFMDIQMPE------------MDGF 790 (876)
Q Consensus 730 ~~ILvVd----Dn~~n~~vl~~~L~~~-g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~MP~------------mdG~ 790 (876)
..++++| +.+.....++.+-+.+ +..|. .+.+.++|..+.. ...|.|..-+. |+ ...+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~--aGAD~I~vG~g-pGs~~~tr~~~g~g~p~~ 197 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE--AGVSAVKVGIG-PGSICTTRIVTGVGVPQI 197 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH--HTCSEEEECSS-CSTTBCHHHHHCCCCCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHH--cCCCEEEEecC-CCCCCCcccccCcccchH
Confidence 3567765 3333444455555555 55554 3788888887763 45899987321 22 2345
Q ss_pred HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 791 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 791 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
+++..+++.-+ ...+|||+--+-.+..+..+++.+|+|....
T Consensus 198 ~~l~~v~~~~~--------------------~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 198 TAIADAAGVAN--------------------EYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHG--------------------GGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHh--------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666654211 1258999988877899999999999998753
No 308
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=38.39 E-value=99 Score=31.32 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=57.9
Q ss_pred EEcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEE
Q 002821 758 CVERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 830 (876)
Q Consensus 758 ~a~~g~eA~~~~~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 830 (876)
.+.+..|+.+... ...|.|...--.|. --|++.++++++.. ...+||+++
T Consensus 141 S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~---------------------~~~iPvvAi 197 (243)
T 3o63_A 141 STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG---------------------GDDKPWFAI 197 (243)
T ss_dssp EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC------------------------CCCEEEE
T ss_pred eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc---------------------cCCCCEEEe
Confidence 4577888777653 35899988543332 23688888887520 126899999
Q ss_pred cCCCCHHhHHHHHHcCCCeeEe-----CCCCHHHHHHHHHhh
Q 002821 831 TADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSRF 867 (876)
Q Consensus 831 Ta~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~~l~~~ 867 (876)
-+- ..+...+++++|++++.. +.-++.+-.+.+.+.
T Consensus 198 GGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 198 GGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp SSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 776 788899999999999864 555665555555443
No 309
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=38.30 E-value=1.3e+02 Score=30.81 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=70.4
Q ss_pred CeEEEE----eCCHHHHHHHHHH--------HhHc-CCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCC-HHH-
Q 002821 730 RKILIV----DDNNVNLKVAAAG--------LKRY-GAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMD-GFE- 791 (876)
Q Consensus 730 ~~ILvV----dDn~~n~~vl~~~--------L~~~-g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~md-G~e- 791 (876)
.+|++. |-+..-..++..+ |+.. ||+|... -..++.++... .+.+|+|.+-..|..-+ ..+
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~-e~~~d~VglS~l~t~~~~~~~~ 199 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAV-ELEADVLLVSQTVTQKNVHIQN 199 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHH-HTTCSEEEEECCCCTTSHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEEeecCCccchHHH
Confidence 467665 6677777778877 9999 9999753 24555566654 46799999999887522 222
Q ss_pred ---HHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 792 ---ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 792 ---~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
+.+.+|+.. ...++||++=-+ .. +...+.+.|+|.|..--.+..++...+.
T Consensus 200 ~~~~i~~L~~~g--------------------~~~~i~vivGG~-~~--~~~~a~~iGad~~~~da~~~~~~a~~l~ 253 (262)
T 1xrs_B 200 MTHLIELLEAEG--------------------LRDRFVLLCGGP-RI--NNEIAKELGYDAGFGPGRFADDVATFAV 253 (262)
T ss_dssp HHHHHHHHHHTT--------------------CGGGSEEEEECT-TC--CHHHHHTTTCSEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------------------CCCCCEEEEECC-cC--CHHHHHHcCCeEEECCchHHHHHHHHHH
Confidence 334444311 012366654333 32 3445778999988876667666655554
No 310
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=37.17 E-value=3.1e+02 Score=28.17 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=64.7
Q ss_pred HHHHHHHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCC---CCCCCHHHHHHHHHhhcccccccccccccchhhh
Q 002821 742 LKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ---MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 817 (876)
Q Consensus 742 ~~vl~~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~---MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 817 (876)
...+....+.+|..+. ++.+.+|+...+. ..+|+|=..-. --..| ++.+.++...-
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~--~ga~iIGinnr~l~t~~~d-l~~~~~L~~~i----------------- 217 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALK--LSSRLLGVNNRNLRSFEVN-LAVSERLAKMA----------------- 217 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTT--SCCSEEEEECBCTTTCCBC-THHHHHHHHHS-----------------
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHh--cCCCEEEECCCCCccCCCC-hHHHHHHHHhC-----------------
Confidence 3444455567898654 6788888766653 46888855421 11222 56677776531
Q ss_pred ccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe-----CCCCHHHHHH
Q 002821 818 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYR 862 (876)
Q Consensus 818 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-----KP~~~~~L~~ 862 (876)
...+|+|+-++-...++..++.++|+|+++. ||-++.+-.+
T Consensus 218 ----p~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~ 263 (272)
T 3tsm_A 218 ----PSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATR 263 (272)
T ss_dssp ----CTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHH
T ss_pred ----CCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHH
Confidence 1258999999999999999999999999975 6666554443
No 311
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=37.07 E-value=2.2e+02 Score=29.84 Aligned_cols=81 Identities=20% Similarity=0.132 Sum_probs=56.8
Q ss_pred HHHHhHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC----C---CCHHHHHHHHHhhcccccccccccccchhhh
Q 002821 746 AAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP----E---MDGFEATKIIREMEHNFNNRIRRGEVSIEAY 817 (876)
Q Consensus 746 ~~~L~~~g~~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP----~---mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 817 (876)
...+++.|..+.. +.+..+|..... ...|.|+.+-.-+ + ...+++++++++.
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~--~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~------------------ 170 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAER--LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR------------------ 170 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHH--TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT------------------
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHH--cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh------------------
Confidence 3456666876554 677888777653 4589888753212 1 2567777777751
Q ss_pred ccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 818 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 818 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
.++|||+--+-.+.++..+++.+|+|+..
T Consensus 171 -----~~iPviaaGGI~~~~~v~~al~~GAdgV~ 199 (328)
T 2gjl_A 171 -----LRVPIIASGGFADGRGLVAALALGADAIN 199 (328)
T ss_dssp -----CCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred -----cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 25899988877788999999999999875
No 312
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=36.96 E-value=22 Score=36.83 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCC------CHHhHHHHHHcCCCeeEeCCCCHHHH
Q 002821 823 FHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQL 860 (876)
Q Consensus 823 ~~~pIIalTa~~------~~~~~~~~~~aG~d~yl~KP~~~~~L 860 (876)
.++||++|+-.. .+...++|.++|+|+.+.--...++.
T Consensus 94 ~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~ 137 (267)
T 3vnd_A 94 PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEES 137 (267)
T ss_dssp TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGC
T ss_pred CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhH
Confidence 368999997532 25678899999999998866655543
No 313
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=36.19 E-value=30 Score=35.65 Aligned_cols=74 Identities=18% Similarity=0.054 Sum_probs=48.1
Q ss_pred CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCC--C---CCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCC
Q 002821 753 GAAVV--CVERGKKATELLMPPHQFDACFMDIQM--P---EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 825 (876)
Q Consensus 753 g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~M--P---~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 825 (876)
|..+. ++.+..++..... ...|.| +-..- + +..+.+.++++|+. ..+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~--~gad~v-~~~~~~~Gt~~~~~~~~~l~~i~~~-----------------------~~i 179 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEE--LGVHAI-MPGASPIGSGQGILNPLNLSFIIEQ-----------------------AKV 179 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHH--HTCSCB-EECSSSTTCCCCCSCHHHHHHHHHH-----------------------CSS
T ss_pred CeEEEEEcCCCHHHHHHHHH--hCCCEE-EECCcccCCCCCCCCHHHHHHHHhc-----------------------CCC
Confidence 76655 4456555544432 235666 22100 0 12347788888862 258
Q ss_pred cEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 826 PILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 826 pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
||++..+-...++..+++++|+|+++.
T Consensus 180 Pviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 180 PVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 999998888899999999999999864
No 314
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=36.09 E-value=62 Score=31.42 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=46.7
Q ss_pred ChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeeeehHHHHHH
Q 002821 91 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 163 (876)
Q Consensus 91 ~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~~v~~l~~~ 163 (876)
++..|+....|..+|+.+++.|+.-..++.+.+.+..|++.... ..+.|+++..++++.|.+.
T Consensus 88 ~~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~pi~~~~~----------g~~~Gvl~~~i~~~~l~~~ 150 (240)
T 3c8c_A 88 DPRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSAT----------GQFLGSIFYDVSLAELAEL 150 (240)
T ss_dssp CGGGSHHHHHHHHHTSCEECCCEECTTTCCEEEEEEEEEECTTT----------CCEEEEEEEEECHHHHHHH
T ss_pred CcccChHHHHHHhcCCcEEeeceEcCCCCeEEEEEEEEEEECCC----------CeEEEEEEEEEEHHHHHHH
Confidence 45568888889988999999998643455678888899986310 1236999999999876553
No 315
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=35.55 E-value=1.6e+02 Score=31.68 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhHcCCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC------------CCCHHHHHHHHHhhcccccc
Q 002821 740 VNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP------------EMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 740 ~n~~vl~~~L~~~g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~MP------------~mdG~e~~~~IR~~~~~~~~ 805 (876)
.....++.+-+.++..|. .+.+.++|..+.. ...|.|..-+. | +...++++..+++.-.
T Consensus 132 ~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~--aGaD~I~VG~~-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~---- 204 (361)
T 3khj_A 132 NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE--NGADGIKVGIG-PGSICTTRIVAGVGVPQITAIEKCSSVAS---- 204 (361)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH--TTCSEEEECSS-CCTTCCHHHHTCBCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH--cCcCEEEEecC-CCcCCCcccccCCCCCcHHHHHHHHHHHh----
Confidence 344555555555677665 4678888877663 45898887321 1 1234556666654211
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
...+|||+--+-.+.++..+++.+|+|..+
T Consensus 205 ----------------~~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 205 ----------------KFGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp ----------------HHTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred ----------------hcCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 124899998887789999999999999874
No 316
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=35.41 E-value=29 Score=35.85 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCcEEEEcCC------CCHHhHHHHHHcCCCeeEeCCCCHHHHHH
Q 002821 824 HVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLYR 862 (876)
Q Consensus 824 ~~pIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~~L~~ 862 (876)
++||++|+-. ........|.++|+|+++.-.+..+++..
T Consensus 94 ~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~ 138 (268)
T 1qop_A 94 TIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAP 138 (268)
T ss_dssp SSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHH
T ss_pred CCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHH
Confidence 5899988622 22577888999999999987776554433
No 317
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=35.22 E-value=91 Score=30.30 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=46.7
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEc
Q 002821 759 VERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 831 (876)
Q Consensus 759 a~~g~eA~~~~~~~~~~DlilmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalT 831 (876)
+.+..++..... ..+|.|+++--.|. ..|++.++++++. .++||++.-
T Consensus 115 ~~t~~e~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------~~~pvia~G 169 (215)
T 1xi3_A 115 VYSLEEALEAEK--KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES-----------------------VKIPVVAIG 169 (215)
T ss_dssp ESSHHHHHHHHH--HTCSEEEEECSSCC----CCCCCHHHHHHHHHHH-----------------------CSSCEEEES
T ss_pred cCCHHHHHHHHh--cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh-----------------------CCCCEEEEC
Confidence 466666655442 35899998754443 3578888888752 157888765
Q ss_pred CCCCHHhHHHHHHcCCCeeE
Q 002821 832 ADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 832 a~~~~~~~~~~~~aG~d~yl 851 (876)
+-. .+...+++++|++++.
T Consensus 170 GI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 170 GIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp SCC-TTTHHHHHTTTCSEEE
T ss_pred CcC-HHHHHHHHHcCCCEEE
Confidence 544 8888899999999884
No 318
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=34.68 E-value=42 Score=34.50 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCC------HHhHHHHHHcCCCeeEeCCCCHHHHHHHHH
Q 002821 824 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVS 865 (876)
Q Consensus 824 ~~pIIalTa~~~------~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~ 865 (876)
++|+++|+-... ......|.++|+|+++.-.+..+++...+.
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~ 141 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKA 141 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 589999854321 456678999999999998777776654443
No 319
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=34.64 E-value=45 Score=34.10 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=47.9
Q ss_pred CChhchHHHHHHHhcCCceeeccccccccCcceEEEEEeeecCCCCCCCChHHHHHhhcceeeeeeehHHHHHH
Q 002821 90 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 163 (876)
Q Consensus 90 s~~~~~~~~~~a~~tg~~~~t~p~~l~~~~~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~~v~~l~~~ 163 (876)
.+...|+...+|+.+|+.++|.|+.- ++.+.+.+..|++..+ .+.|++++.++++.|.+.
T Consensus 120 ~d~~~~~w~~~a~~~~~~~~s~p~~~--~~~~~i~~~~pi~~~g------------~~~Gvl~~~i~l~~l~~~ 179 (291)
T 3li9_A 120 VHYDSSDYYQLPKTTGKDTLTEPYFY--EGIFMVSYDSPIFKNG------------EFAGIAGVDVPLEYVDDV 179 (291)
T ss_dssp CCTTTSHHHHHHHHHCSCEECCCEEE--TTEEEEEEEEEEEETT------------EEEEEEEEEEECHHHHHH
T ss_pred CCCccchHHHHHHHhCCCEEEccEEe--CCEEEEEEEEEEEECC------------EEEEEEEEEeeHHHHHHH
Confidence 44566899999999999999999873 6778888899998532 346999999999886553
No 320
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=34.49 E-value=64 Score=31.56 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=53.1
Q ss_pred HHHhHcCCEEE-EEcCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhcccccccccccccchhhhccCCCCC
Q 002821 747 AGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 824 (876)
Q Consensus 747 ~~L~~~g~~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~ 824 (876)
...+++|..+. .+.+..++.+... ...|.|.+ .| ...|.+.++++++.- ..+
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~--~G~d~v~v---~~t~~~g~~~~~~l~~~~---------------------~~~ 148 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE--AGAQALKI---FPSSAFGPQYIKALKAVL---------------------PSD 148 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH--TTCSEEEE---TTHHHHCHHHHHHHHTTS---------------------CTT
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH--CCCCEEEE---ecCCCCCHHHHHHHHHhc---------------------cCC
Confidence 45566776532 3678888876653 45899885 22 123567777776521 114
Q ss_pred CcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 825 VPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 825 ~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
+||++..+-. .++..+++++|++++..
T Consensus 149 ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 149 IAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp CEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred CeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 8998877765 88999999999999873
No 321
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=34.03 E-value=1e+02 Score=30.90 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe------CCCCHHHHHHH
Q 002821 790 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS------KPFEAEQLYRE 863 (876)
Q Consensus 790 ~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~------KP~~~~~L~~~ 863 (876)
++.++++++. ..+|||+-.+-...++..+++++|+|+.+. .|++..++.+.
T Consensus 185 ~~~i~~l~~~-----------------------~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 241 (252)
T 1ka9_F 185 LRLTRMVAEA-----------------------VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRY 241 (252)
T ss_dssp HHHHHHHHHH-----------------------CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 8888988863 258999998888889999999999998753 57888888776
Q ss_pred HHh
Q 002821 864 VSR 866 (876)
Q Consensus 864 l~~ 866 (876)
+.+
T Consensus 242 l~~ 244 (252)
T 1ka9_F 242 LAE 244 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 322
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=33.78 E-value=94 Score=31.11 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=53.2
Q ss_pred HHHHHhHcCCEEEEEcC---HHHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhcccccccccccccch
Q 002821 745 AAAGLKRYGAAVVCVER---GKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSI 814 (876)
Q Consensus 745 l~~~L~~~g~~v~~a~~---g~eA~~~~~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~ 814 (876)
....++++|..+-.+-+ ..+.++.+. ...|.|+..---|+.+| ++-++++|++
T Consensus 104 ~i~~i~~~G~k~gval~p~t~~e~l~~~l--~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~--------------- 166 (228)
T 3ovp_A 104 LIKDIRENGMKVGLAIKPGTSVEYLAPWA--NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ--------------- 166 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGTGGGG--GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH---------------
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHh--ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh---------------
Confidence 44555778887665543 334444332 23788887666787766 3334455542
Q ss_pred hhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 815 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 815 ~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
..+.| |.+.+....++..+|.++|+|.++.
T Consensus 167 -------~~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 167 -------FPSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp -------CTTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred -------cCCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 11344 5678888899999999999998764
No 323
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=32.74 E-value=51 Score=29.13 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=40.2
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002821 726 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 782 (876)
Q Consensus 726 ~~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi 782 (876)
++.|-.+|+==-++..|+++..+|..+|+.+..+... . ....||+.+.|-
T Consensus 4 LLdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der------~-~~~eyDi~lTDn 53 (117)
T 2kx7_A 4 LLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER------L-ISQDYDIFLTDN 53 (117)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS------S-SCCCCSEEEEES
T ss_pred cccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc------C-CCCcccEEEecC
Confidence 4567788998899999999999999999988776322 1 245799999995
No 324
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=32.39 E-value=47 Score=33.46 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=46.2
Q ss_pred chHHHHHHHhcCCceeeccccccccC-cceEEEEEeeecCCCCCCCChHHHHHhhcceeeeeeehHHHHHH
Q 002821 94 DRENVLRARASGKGVLTAPFRLLKTN-RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 163 (876)
Q Consensus 94 ~~~~~~~a~~tg~~~~t~p~~l~~~~-~~g~~~~~pvy~~~~~~~~~~~~r~~~~~g~~~~~~~v~~l~~~ 163 (876)
.|+...+|+.+|+.++|.|+.-..++ .+.+.+..|++..+ .+.|+++..++++.|.+.
T Consensus 117 ~~~w~~~a~~~~~~~~s~~~~~~~~~~~~~i~~~~pi~~~g------------~~~Gv~~~~i~l~~l~~~ 175 (274)
T 3lic_A 117 NWDWWSKAINQVGGYWSKAYFDEGAGNVLMITYAVPFGVQP------------DYFGVTTVDLALDRLPEQ 175 (274)
T ss_dssp SCHHHHTTTTTSSCEECCCEECTTTTCSEEEEEEEEESCTT------------CCCEEEEEEEEGGGHHHH
T ss_pred CCcHHHHHHhcCCCEEEeeEEcCCCCceEEEEEEEEEccCC------------EEEEEEEEEEEHHHHHHH
Confidence 78999999999999999998755444 58888899998622 236999999999986554
No 325
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=31.49 E-value=69 Score=31.55 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA 754 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~ 754 (876)
+.+|.-||-|+.....++..|++.|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999886
No 326
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=30.63 E-value=2e+02 Score=33.33 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCeEEEE----eCCHHHHHHH----HHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCC----CCHHH-H
Q 002821 729 GRKILIV----DDNNVNLKVA----AAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE----MDGFE-A 792 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl----~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~----mdG~e-~ 792 (876)
..+||+. |=+..-.+++ ..+|+..||+|+.. ...++.++.+. ++.+|+|.+-..|.. |..+. +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~-EedADVVGLSsLLTt~dihL~~Mkev 680 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAI-ELKADAILASTIISHDDIHYKNMKRI 680 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCchhhHHHHHHH
Confidence 3478888 5555555433 57899999999854 35677777764 467999999988876 33332 3
Q ss_pred HHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHh
Q 002821 793 TKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 866 (876)
Q Consensus 793 ~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~ 866 (876)
.+.+|+.. ....+||++ -+..... .-+.+.|+|.|..--.+..++...+..
T Consensus 681 IelLrE~G--------------------lrDkIkVIV-GGa~~tq--d~AkeIGADa~f~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 681 HELAVEKG--------------------IRDKIMIGC-GGTQVTP--EVAVKQGVDAGFGRGSKGIHVATFLVK 731 (763)
T ss_dssp HHHHHHTT--------------------CTTTSEEEE-ECTTCCH--HHHHTTTCSEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhcC--------------------CCCCCEEEE-ECCCCCH--HHHHHcCCcEEECCcchHHHHHHHHHH
Confidence 44455421 011356554 3333322 235689999998877777766655543
No 327
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=30.39 E-value=1.2e+02 Score=33.26 Aligned_cols=97 Identities=18% Similarity=0.307 Sum_probs=61.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g-~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
+..+.|+|.|+.....+ ++.|+.+...+-. .+.++.. .-...|+|+.-+.-+ ..-..++..+|++
T Consensus 27 g~~vvvId~d~~~v~~~----~~~g~~vi~GDat~~~~L~~a-gi~~A~~viv~~~~~-~~n~~i~~~ar~~-------- 92 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDP-QTNLQLTEMVKEH-------- 92 (413)
T ss_dssp TCCEEEEECCHHHHHHH----HHTTCCCEESCTTCHHHHHHT-TTTTCSEEEECCSSH-HHHHHHHHHHHHH--------
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEcCCCCHHHHHhc-CCCccCEEEECCCCh-HHHHHHHHHHHHh--------
Confidence 45799999998765443 4578877665433 3445544 234689998866321 1234455666654
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCC
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPF 855 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~ 855 (876)
.++++||+-+.+ .+......++|+|..+.--+
T Consensus 93 --------------~p~~~Iiara~~--~~~~~~L~~~Gad~Vi~~~~ 124 (413)
T 3l9w_A 93 --------------FPHLQIIARARD--VDHYIRLRQAGVEKPERETF 124 (413)
T ss_dssp --------------CTTCEEEEEESS--HHHHHHHHHTTCSSCEETTH
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEECccH
Confidence 346788887754 56667778999998776443
No 328
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=30.35 E-value=88 Score=30.89 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=46.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE---EEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA---VVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~---v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|.-||=++.....++..+++.|.. +.. ..+..+.+..+ ....||+||+|...+ +-.++.+.+..
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-~~~~fD~V~~d~~~~--~~~~~l~~~~~ 151 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-ANDSYQLVFGQVSPM--DLKALVDAAWP 151 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-CTTCEEEEEECCCTT--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-cCCCcCeEEEcCcHH--HHHHHHHHHHH
Confidence 458999999999999999999998865 554 34555554433 246799999997543 33345555544
No 329
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=30.15 E-value=90 Score=34.58 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=31.9
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHhHcCCEEEEEcCH-------HHHHHHhCCCCCccEEEEeC
Q 002821 729 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDI 782 (876)
Q Consensus 729 ~~~ILvVdDn~---~n~~vl~~~L~~~g~~v~~a~~g-------~eA~~~~~~~~~~DlilmDi 782 (876)
|+++++||-++ .....+...-...|..+..+..+ .++++.+. ...||+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~-~~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK-LKFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH-HTTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH-hCCCCEEEEEC
Confidence 67899999886 22222333334457776655432 33454442 24699999998
No 330
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=29.04 E-value=42 Score=34.32 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCccEEEEeCCCC--CCC--------------------HHHHHHHHHhhcccccccccccccchhhhccC
Q 002821 763 KKATELLMPPHQFDACFMDIQMP--EMD--------------------GFEATKIIREMEHNFNNRIRRGEVSIEAYENV 820 (876)
Q Consensus 763 ~eA~~~~~~~~~~DlilmDi~MP--~md--------------------G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 820 (876)
.+.++.+ .....|+|-+++-.+ .|| +++.++++|+
T Consensus 35 ~~~~~~l-~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~---------------------- 91 (262)
T 1rd5_A 35 AEALRLL-DGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTP---------------------- 91 (262)
T ss_dssp HHHHHHH-HHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGG----------------------
T ss_pred HHHHHHH-HHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----------------------
Q ss_pred CCCCCcEEEEc--CCCCHHhHHHHHHcCCCeeEeCCCCHHHHHHHHHhh
Q 002821 821 SNFHVPILAMT--ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 821 ~~~~~pIIalT--a~~~~~~~~~~~~aG~d~yl~KP~~~~~L~~~l~~~ 867 (876)
..++|+++|+ ........+.|.++|+|+++.-....+++.+.+...
T Consensus 92 -~~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 92 -ELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp -GCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred -cCCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
No 331
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=28.65 E-value=1.1e+02 Score=30.70 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=47.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE--EE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|..||=++.....++..+++.|.. |. ...+..+.+..+.....||+|++|...+ +-..+.+.++.
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 158 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKP--NNPHYLRWALR 158 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchH--HHHHHHHHHHH
Confidence 468999999999999999999988753 43 4567766666543234799999997432 22344555544
No 332
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=27.80 E-value=1.8e+02 Score=30.38 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=47.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhH--cC----C-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCC-CCH-------HHHH
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKR--YG----A-AVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDG-------FEAT 793 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~--~g----~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~-mdG-------~e~~ 793 (876)
..+|..||=++.....++..+.. .| - .-....|+.+.+... ...||+|++|.-.|. ++| -++.
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l 178 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--EERYDVVIIDLTDPVGEDNPARLLYTVEFY 178 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--CCCEEEEEEECCCCBSTTCGGGGGSSHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc--CCCccEEEECCCCcccccCcchhccHHHHH
Confidence 35899999999999999888764 12 1 233457777766543 467999999987765 223 4666
Q ss_pred HHHHhh
Q 002821 794 KIIREM 799 (876)
Q Consensus 794 ~~IR~~ 799 (876)
+.+++.
T Consensus 179 ~~~~~~ 184 (314)
T 1uir_A 179 RLVKAH 184 (314)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777653
No 333
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=27.04 E-value=3.2e+02 Score=29.54 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhHc-CCEEE--EEcCHHHHHHHhCCCCCccEEEEeCCC---------C--CCCHHHHHHHHHhhcccccc
Q 002821 740 VNLKVAAAGLKRY-GAAVV--CVERGKKATELLMPPHQFDACFMDIQM---------P--EMDGFEATKIIREMEHNFNN 805 (876)
Q Consensus 740 ~n~~vl~~~L~~~-g~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~M---------P--~mdG~e~~~~IR~~~~~~~~ 805 (876)
...+.++.+-+.. +..|. .+.+.++|..+.. ...|.|..-... + +.-.++++..+++.-.
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~--~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~---- 253 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACN---- 253 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT--TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh--cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHh----
Confidence 3444444444444 66655 4677777776653 458998882110 0 1224566666664211
Q ss_pred cccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 806 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 806 ~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
...+|||+..+-.+.++..+++.+|+|....
T Consensus 254 ----------------~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 254 ----------------NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp ----------------TSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ----------------hcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 1268999988888899999999999998754
No 334
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=27.03 E-value=1.5e+02 Score=29.48 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=44.7
Q ss_pred CeEEEEeCC------HHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 730 RKILIVDDN------NVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 730 ~~ILvVdDn------~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
++|++|+-. ..|...+..+|++.|+++..+ ++..+.++ ..|.|++ |+-+-..+.+.+++
T Consensus 32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~------~ad~I~l----pGG~~~~~~~~l~~ 99 (229)
T 1fy2_A 32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE------KAEIIIV----GGGNTFQLLKESRE 99 (229)
T ss_dssp CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH------HCSEEEE----CCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh------cCCEEEE----CCCcHHHHHHHHHH
Confidence 589999754 378888899999999998887 44333332 2588875 88888888888886
No 335
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=27.02 E-value=2.5e+02 Score=29.49 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=56.7
Q ss_pred HHHHhHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhcccccccccccccchhhhcc
Q 002821 746 AAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYEN 819 (876)
Q Consensus 746 ~~~L~~~g~~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~ 819 (876)
...+++.|..+.. +.+.++|..+.. ...|.|+.+-.-+ ....+++++++++.
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~--~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~-------------------- 174 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVER--AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS-------------------- 174 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH--------------------
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHH--cCCCEEEEECCCCCccCCCccHHHHHHHHHHH--------------------
Confidence 3456667876654 577777766553 3478888864211 13457788887752
Q ss_pred CCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 820 VSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 820 ~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
..+|||+--+-.+.++..+++.+|+++..
T Consensus 175 ---~~iPviaaGGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 175 ---VNIPVIAAGGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp ---CSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred ---cCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 25899988888889999999999999875
No 336
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=27.00 E-value=1.2e+02 Score=35.41 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=38.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 727 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 727 ~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
..|++|||+|-..-+...+...|...|+.+....+... . ....||.|++
T Consensus 444 ~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~-~~~~~DgIIl 492 (645)
T 3r75_A 444 LSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----V-DLARYDVVVM 492 (645)
T ss_dssp STTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----C-CGGGCSEEEE
T ss_pred CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----c-cccCCCEEEE
Confidence 46789999999988889999999999998887754432 1 1235888887
No 337
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=26.40 E-value=1.1e+02 Score=30.58 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=48.7
Q ss_pred Ccc-EEEEeCCCCC-CC--HHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCe
Q 002821 774 QFD-ACFMDIQMPE-MD--GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 849 (876)
Q Consensus 774 ~~D-lilmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~ 849 (876)
.++ ++++++.-.+ +. .++.++++++. ..+|||+-.+-...++..+++++|+|+
T Consensus 164 G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~-----------------------~~ipvia~GGI~~~~d~~~~~~~Gadg 220 (253)
T 1thf_D 164 GAGEILLTSIDRDGTKSGYDTEMIRFVRPL-----------------------TTLPIIASGGAGKMEHFLEAFLAGADA 220 (253)
T ss_dssp TCSEEEEEETTTTTSCSCCCHHHHHHHGGG-----------------------CCSCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred CCCEEEEEeccCCCCCCCCCHHHHHHHHHh-----------------------cCCCEEEECCCCCHHHHHHHHHcCChH
Confidence 456 4456654211 12 27888888752 258999988877789999999999998
Q ss_pred eE------eCCCCHHHHHHHHHh
Q 002821 850 YV------SKPFEAEQLYREVSR 866 (876)
Q Consensus 850 yl------~KP~~~~~L~~~l~~ 866 (876)
++ ..|++.+++.+.+.+
T Consensus 221 v~vGsal~~~~~~~~~~~~~l~~ 243 (253)
T 1thf_D 221 ALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp EEESHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 75 356788777776654
No 338
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=26.03 E-value=2e+02 Score=28.36 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeE------eCCCCHHHHHHHHHh
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYV------SKPFEAEQLYREVSR 866 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl------~KP~~~~~L~~~l~~ 866 (876)
++||++-.+-...++..+++++|+|+++ ..+.+.+++.+.+++
T Consensus 198 ~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 198 RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKE 246 (253)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5899988777777999999999999875 356677777776654
No 339
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=25.84 E-value=1.6e+02 Score=30.68 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=0.0
Q ss_pred EEEEeCCHHH----HHHHHHHHhHcCCE---EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhccccc
Q 002821 732 ILIVDDNNVN----LKVAAAGLKRYGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 804 (876)
Q Consensus 732 ILvVdDn~~n----~~vl~~~L~~~g~~---v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~ 804 (876)
+||.||+... ...++..-+..|.. -..+.+-+|+.+.+ ....|.|.+|-.-| +.++++.+.
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~--~aGaD~I~ld~~~~-----~~~k~av~~----- 236 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEAL--EAGADLILLDNFPL-----EALREAVRR----- 236 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHH--HHTCSEEEEESCCH-----HHHHHHHHH-----
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH--HcCCCEEEECCCCH-----HHHHHHHHH-----
Q ss_pred ccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCee
Q 002821 805 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 850 (876)
Q Consensus 805 ~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~y 850 (876)
..+++|+++ ++....+...+..++|+|.+
T Consensus 237 ----------------v~~~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 237 ----------------VGGRVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp ----------------HTTSSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred ----------------hCCCCeEEE-EcCCCHHHHHHHHHcCCCEE
No 340
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=25.58 E-value=2.4e+02 Score=28.09 Aligned_cols=82 Identities=9% Similarity=0.082 Sum_probs=52.3
Q ss_pred HHhHcCCEEEEEcCH---HHHHHHhCCCCCccEEEEeCCCCCCCH-------HHHHHHHHhhcccccccccccccchhhh
Q 002821 748 GLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSIEAY 817 (876)
Q Consensus 748 ~L~~~g~~v~~a~~g---~eA~~~~~~~~~~DlilmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~g~~~~~~~ 817 (876)
.+++.|..+-.+-+. .+.++.+..-...|+|+.=--=|+-+| ++-++++|++-
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~----------------- 171 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY----------------- 171 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-----------------
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc-----------------
Confidence 667789877766443 344444432124788865444466555 44455555431
Q ss_pred ccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 818 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 818 ~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.+++ |.+.+....++..+|.++|+|.++.
T Consensus 172 -----~~~~-I~VdGGI~~~ti~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 172 -----KNLN-IQVDGGLNIETTEISASHGANIIVA 200 (227)
T ss_dssp -----TTCE-EEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred -----cCCe-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 1333 5678888999999999999998764
No 341
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=25.51 E-value=1e+02 Score=31.29 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeEeC--CC----CHHHHHHHH
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYVSK--PF----EAEQLYREV 864 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~K--P~----~~~~L~~~l 864 (876)
.+||++...-.+.++..+++++|+|+.+.= ++ +++.+.+.+
T Consensus 74 ~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~ 120 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFLEAFLAGADKALAASVFHFREIDMRELKEYL 120 (266)
T ss_dssp CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC------CHHHHHHC
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHhCCCCHHHHHHHH
Confidence 589999888778888999999999987653 33 445555443
No 342
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=25.50 E-value=1.6e+02 Score=29.12 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE--EE-EEcCHHHHHHHhC----CCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLM----PPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eA~~~~~----~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|.-+|-++.....++..+++.|.. +. ...+..+.+..+. ....||+||+|...+ +-.++.+.+..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHH
Confidence 468999999999999999999988862 43 4567777665441 135799999996432 22344555544
No 343
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=25.41 E-value=1.6e+02 Score=28.56 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEE
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 780 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~Dlilm 780 (876)
++|+|||=-.-|...+...|++.|++++.+.+.++. + .+|.|++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l-~------~~D~lil 46 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV-L------AADKLFL 46 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH-H------HCSEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH-h------CCCEEEE
Confidence 479999977777788999999999999998876542 2 2588876
No 344
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=25.32 E-value=5.7e+02 Score=26.25 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=62.0
Q ss_pred HHHHHhHcCC-EEEEE--cCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCC
Q 002821 745 AAAGLKRYGA-AVVCV--ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 821 (876)
Q Consensus 745 l~~~L~~~g~-~v~~a--~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~ 821 (876)
++..|+. |. .+-.. .+..+.++.+. ...+|.|++|++=...+--++...++...
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~-~~GaD~v~lDlEh~~~~~~~~~~~l~a~~--------------------- 86 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLA-GAGFDWLLIDGEHAPNNVQTVLTQLQAIA--------------------- 86 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHH-TSCCSEEEEESSSSSCCHHHHHHHHHHHT---------------------
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHH-hCCCCEEEEeCCCccchHHHHHHHHHHHH---------------------
Confidence 4455554 43 33332 33344455553 35699999999765555545555555431
Q ss_pred CCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe-CCCCHHHHHHHHHhh
Q 002821 822 NFHVPILAMTADVIQATYEECLRSGMDGYVS-KPFEAEQLYREVSRF 867 (876)
Q Consensus 822 ~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~-KP~~~~~L~~~l~~~ 867 (876)
....|+++=+...+..+...++++|+++.+. |--+.+++...++..
T Consensus 87 ~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 87 PYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp TSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 1135677777777788999999999997644 445778877766543
No 345
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.11 E-value=1.1e+02 Score=32.03 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=34.4
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHhHcCCEEEEEc---CH----HHHHHHhCCCCCccEEEEeCCCCCCCH
Q 002821 729 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVE---RG----KKATELLMPPHQFDACFMDIQMPEMDG 789 (876)
Q Consensus 729 ~~~ILvVdDn~---~n~~vl~~~L~~~g~~v~~a~---~g----~eA~~~~~~~~~~DlilmDi~MP~mdG 789 (876)
+++++++|-+. .....+....++.|..+.... +. .++++.+. ...||+||+|. |+..+
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~-~~~~D~ViIDT--pg~~~ 193 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL-SEKMEIIIVDT--AGRHG 193 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH-HTTCSEEEEEC--CCSCC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH-hCCCCEEEEeC--CCCcc
Confidence 56899999883 233334444455677665542 22 24455442 24699999998 54443
No 346
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=24.69 E-value=1.3e+02 Score=28.39 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=40.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHhCCCCCccEEEEeC
Q 002821 727 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 782 (876)
Q Consensus 727 ~~~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~~~~~~~DlilmDi 782 (876)
+.+++|-++..... ...|++.|..+..+.+..++++++. .+..|++++|.
T Consensus 110 L~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~-~g~~D~~~~~~ 159 (228)
T 2pyy_A 110 LPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQ-TKKADAVVFDA 159 (228)
T ss_dssp CTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHH-TTSSSEEEEEH
T ss_pred cCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHH-cCCCCEEEecH
Confidence 56789988887753 3456678999999999999999996 57899999974
No 347
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=24.60 E-value=2.2e+02 Score=29.13 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=47.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcC-----C-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHH
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYG-----A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIR 797 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g-----~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG-----~e~~~~IR 797 (876)
..+|..||=++...+.++..+...+ - .-....|+.+.+... ...||+|++|.-.|.... -++.+.++
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~ 179 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYDVIIVDSSDPIGPAETLFNQNFYEKIY 179 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEEEEEEECCCTTTGGGGGSSHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 3589999999999999998886531 2 233567777766543 467999999986654222 36666666
Q ss_pred hh
Q 002821 798 EM 799 (876)
Q Consensus 798 ~~ 799 (876)
+.
T Consensus 180 ~~ 181 (283)
T 2i7c_A 180 NA 181 (283)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 348
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=24.16 E-value=4.1e+02 Score=29.70 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=64.3
Q ss_pred eEEEEe----CCHHHHHHHHHHHhHc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCC------------CCHHH
Q 002821 731 KILIVD----DNNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDIQMPE------------MDGFE 791 (876)
Q Consensus 731 ~ILvVd----Dn~~n~~vl~~~L~~~-g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~MP~------------mdG~e 791 (876)
.++++| ..+.....++.+-+.+ +..+.. +.+.++|..+.. ...|.|.+-+. |+ ...++
T Consensus 243 d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~--aGaD~I~vg~g-~Gs~~~t~~~~g~g~p~~~ 319 (490)
T 4avf_A 243 DVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE--AGADAVKVGIG-PGSICTTRIVAGVGVPQIS 319 (490)
T ss_dssp SEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH--TTCSEEEECSS-CSTTCHHHHHTCBCCCHHH
T ss_pred ceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH--cCCCEEEECCC-CCcCCCccccCCCCccHHH
Confidence 466665 3444456666666666 445443 678888877663 45899987321 21 22455
Q ss_pred HHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 792 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 792 ~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
++..+++.- ....+|||+--+-...++..+++.+|++..+.
T Consensus 320 ~l~~v~~~~--------------------~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 320 AIANVAAAL--------------------EGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHH--------------------TTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--------------------ccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 556665421 12358999998888999999999999998754
No 349
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=23.82 E-value=5.8e+02 Score=25.79 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=55.1
Q ss_pred CHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHH
Q 002821 761 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 840 (876)
Q Consensus 761 ~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 840 (876)
...+.++.+. ...+|.|++|++=...+--++...++.... ...|+++=+...+..+..
T Consensus 27 ~~p~~~e~a~-~~GaD~v~lDlE~~~~~~~~~~~~~~a~~~---------------------~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 27 TTAYMAEIAA-TSGYDWLLIDGEHAPNTIQDLYHQLQAVAP---------------------YASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp CCHHHHHHHH-TTCCSEEEEETTTSCCCHHHHHHHHHHHTT---------------------SSSEEEEECSSCCHHHHH
T ss_pred CCHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHHHHh---------------------CCCcEEEEeCCCCHHHHH
Confidence 3444455553 356999999997665665555555554321 134566656666788899
Q ss_pred HHHHcCCCeeEe-CCCCHHHHHHHHHhh
Q 002821 841 ECLRSGMDGYVS-KPFEAEQLYREVSRF 867 (876)
Q Consensus 841 ~~~~aG~d~yl~-KP~~~~~L~~~l~~~ 867 (876)
.++++|+++.+. |--+.+++...++..
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 999999997544 445778877665543
No 350
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=23.74 E-value=1.5e+02 Score=28.11 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=29.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhH--cCCEEEEEcC--HHHHHHHhCCCCCccEEEEeCC
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKR--YGAAVVCVER--GKKATELLMPPHQFDACFMDIQ 783 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~--~g~~v~~a~~--g~eA~~~~~~~~~~DlilmDi~ 783 (876)
|+++|+||=++.. -+...+.. .++.+..+.. -.+.++.+. ..||+||+|.-
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~yD~viiD~~ 84 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAASEKDVYGIRKDL--ADYDFAIVDGA 84 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCSHHHHHTHHHHT--TTSSEEEEECC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCcHHHHHHHHHhc--CCCCEEEEECC
Confidence 6789999987643 23334432 3455555543 123344443 35999999973
No 351
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=23.58 E-value=2.4e+02 Score=27.51 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=44.1
Q ss_pred EcCHHHHHHHhCCCCCccEEEEeCCCC--------CCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEE
Q 002821 759 VERGKKATELLMPPHQFDACFMDIQMP--------EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM 830 (876)
Q Consensus 759 a~~g~eA~~~~~~~~~~DlilmDi~MP--------~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIal 830 (876)
+.+..++..... ..+|.|++..-.| ..-|++.++++++. ..++||++.
T Consensus 123 ~~t~~e~~~a~~--~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~----------------------~~~~pvia~ 178 (227)
T 2tps_A 123 AHTMSEVKQAEE--DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ----------------------GISIPIVGI 178 (227)
T ss_dssp ECSHHHHHHHHH--HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT----------------------TCCCCEEEE
T ss_pred cCCHHHHHHHHh--CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh----------------------CCCCCEEEE
Confidence 466667655442 3589998622111 12367888888752 113798876
Q ss_pred cCCCCHHhHHHHHHcCCCeeE
Q 002821 831 TADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 831 Ta~~~~~~~~~~~~aG~d~yl 851 (876)
-+-. .+...+++++|++++.
T Consensus 179 GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 179 GGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp SSCC-TTTSHHHHHTTCSEEE
T ss_pred cCCC-HHHHHHHHHcCCCEEE
Confidence 6544 8888889999999874
No 352
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=23.58 E-value=56 Score=33.53 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 772 PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 772 ~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
..++|+||+|+ .|. .|.-.+.+.|.+. --+...+.++-|-+.|+
T Consensus 137 ~~~~DvVLSDM-APn-SG~~~vD~~Rs~~----------------------------------aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 137 SEISDTLLCDI-GES-SPSAEIEEQRTLR----------------------------------ILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp CCCCSEEEECC-CCC-CSCHHHHHHHHHH----------------------------------HHHHHHHHHTTCCSEEE
T ss_pred CCCCCEEEeCC-CCC-CCccHHHHHHHHH----------------------------------HHHHHHHHhhcCCcEEE
Confidence 45799999997 466 9988888888641 11334566777777899
Q ss_pred eCCCCH--HHHHH---HHHhhCC
Q 002821 852 SKPFEA--EQLYR---EVSRFFP 869 (876)
Q Consensus 852 ~KP~~~--~~L~~---~l~~~~~ 869 (876)
.|=|.. +++.+ .+++.|.
T Consensus 181 vKVFqg~~~~~~~~l~~lk~~F~ 203 (269)
T 2px2_A 181 IKILCPYMPKVIEKLESLQRRFG 203 (269)
T ss_dssp EEESCTTSHHHHHHHHHHHHHHC
T ss_pred EEECCCCchHHHHHHHHHHHHcC
Confidence 998887 56644 6666654
No 353
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=23.08 E-value=1.8e+02 Score=33.51 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=42.7
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhHcCCEEEEE---cCHHHHHHHhCCCCCccEEEEeCCCC
Q 002821 729 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMP 785 (876)
Q Consensus 729 ~~~ILvV----dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eA~~~~~~~~~~DlilmDi~MP 785 (876)
+.+||++ |-+..-..++..+|+..||+|... ....+.++.+. .+.+|+|.+-..|.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~-~~~~diVgLS~l~t 160 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAK-EVNADLIGLSGLIT 160 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHH-HHTCSEEEEECCST
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEEecCC
Confidence 4578888 667788889999999999999864 34555555553 46799999998775
No 354
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=22.97 E-value=2.1e+02 Score=25.85 Aligned_cols=43 Identities=5% Similarity=0.171 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeEeCCCCHHHHH-HHHHh
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLY-REVSR 866 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~KP~~~~~L~-~~l~~ 866 (876)
..+++++|+.........+-..|.+.|+..+-...+.+ ..+++
T Consensus 52 g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~ 95 (162)
T 2p9j_A 52 GITLAVISGRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEK 95 (162)
T ss_dssp TCEEEEEESCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHH
Confidence 36899999988777777777889999986443333433 34433
No 355
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=22.95 E-value=2.1e+02 Score=30.17 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHc-CC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCC-----HHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRY-GA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMD-----GFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~-g~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~md-----G~e~~~~IR~ 798 (876)
+.+|.+||=++.....++..+... +- .-....|+.+.+..+ ....||+|++|.-.|... .-++.+.++.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r 188 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHR 188 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-cCCCCCEEEECCCCccccchhhhHHHHHHHHHH
Confidence 348999999999999998887643 12 233567888876644 246799999998655321 2466666655
No 356
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=22.90 E-value=1.7e+02 Score=28.70 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=45.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEE-EEcCHHHHHHHhCC-C--CCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP-P--HQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eA~~~~~~-~--~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|..+|-++.....++..+++.|. .+. ...+..+.+..+.. . ..||+||+|...+ +-.++.+.+..
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 170 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR--NYPRYYEIGLN 170 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH--HHHHHHHHHHH
Confidence 45899999999999999999988775 233 45666666554421 2 5799999996422 22344555543
No 357
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=22.85 E-value=1.8e+02 Score=28.23 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE--EE-EEcCHHHHHHHhCC---CCCccEEEEeCCC
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQM 784 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eA~~~~~~---~~~~DlilmDi~M 784 (876)
+.+|.-||=++.....++..++..|.. |. ...+..+.+..+.. ...||+||+|...
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~ 144 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWK 144 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCc
Confidence 458999999999999999999988752 33 45676666554421 1579999999744
No 358
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=22.64 E-value=2.1e+02 Score=28.47 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 823 FHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 823 ~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
..+|+++...-.+.++.++++++|+|..+.
T Consensus 74 ~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 368999999999999999999999998765
No 359
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=22.58 E-value=2e+02 Score=29.78 Aligned_cols=72 Identities=15% Similarity=-0.004 Sum_probs=49.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEeC
Q 002821 774 QFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 853 (876)
Q Consensus 774 ~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~K 853 (876)
..++|.+|+.- .--..+.+++|++.- ...+|+++=-+-.+.++..+++++|+|..+.-
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~---------------------~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGL---------------------GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHS---------------------CTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhc---------------------CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 36899999865 334468889998731 11579998888888999999999999998765
Q ss_pred C--CC---HHHHHHHHHhh
Q 002821 854 P--FE---AEQLYREVSRF 867 (876)
Q Consensus 854 P--~~---~~~L~~~l~~~ 867 (876)
- ++ ++.+.+.+.+|
T Consensus 257 SAav~d~~Pelv~e~a~~~ 275 (286)
T 3vk5_A 257 GALEQPDWRSALAEIAGRR 275 (286)
T ss_dssp GGGSSTTHHHHHHHHHC--
T ss_pred chhhcCCCHHHHHHHHHhC
Confidence 4 22 23444555444
No 360
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=22.51 E-value=1.1e+02 Score=30.66 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEE--EEcCCCCHHhHHHHHHcCCCeeEeCCC
Q 002821 788 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL--AMTADVIQATYEECLRSGMDGYVSKPF 855 (876)
Q Consensus 788 dG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pII--alTa~~~~~~~~~~~~aG~d~yl~KP~ 855 (876)
.|.+.++.||+. .+.|+. .|+.+ .....+.|.++|+|+...-..
T Consensus 49 ~g~~~v~~lr~~-----------------------~~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 49 IGPLIVDAIRPL-----------------------TKKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp BCHHHHHHHGGG-----------------------CCSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred hhHHHHHHHHhh-----------------------cCCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcc
Confidence 367899999863 134555 67754 345678899999998865544
No 361
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=22.45 E-value=2.6e+02 Score=29.35 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=54.3
Q ss_pred HHHhHcCCEEEE-EcCHHHHHHHhCCCCCccEEEEeCCCC-----CCCHHHHHHHHHhhcccccccccccccchhhhccC
Q 002821 747 AGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMP-----EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 820 (876)
Q Consensus 747 ~~L~~~g~~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~ 820 (876)
..+++.|..+.. +.+.++|..+.. ...|.|+.+-.-. ....+++++++++.
T Consensus 104 ~~l~~~g~~v~~~v~~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~--------------------- 160 (332)
T 2z6i_A 104 ERFHEAGIIVIPVVPSVALAKRMEK--IGADAVIAEGMEAGGHIGKLTTMTLVRQVATA--------------------- 160 (332)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---------------------
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEEECCCCCCCCCCccHHHHHHHHHHh---------------------
Confidence 344556766553 566666655542 3478888863211 23457888888752
Q ss_pred CCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 821 SNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 821 ~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
..+|||+--+-.+.++..+++..|+|+..
T Consensus 161 --~~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 161 --ISIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp --CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred --cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 25899988888889999999999999864
No 362
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=22.24 E-value=1.6e+02 Score=30.54 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=49.7
Q ss_pred HhHcCC-EEEEEcCHHHHHHHhCCCCCccEEEEeCCCC----CCCHHH-------HHHHHHhhcccccccccccccchhh
Q 002821 749 LKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMP----EMDGFE-------ATKIIREMEHNFNNRIRRGEVSIEA 816 (876)
Q Consensus 749 L~~~g~-~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP----~mdG~e-------~~~~IR~~~~~~~~~~~~g~~~~~~ 816 (876)
.++.|. .+.|+.|.++|..+.. -.+|+|.+. || +.-|.+ +.+.|+++-...
T Consensus 159 A~~~gL~Ti~~v~~~eeA~amA~--agpDiI~~h--~glT~gglIG~~~avs~~~~~e~i~~i~~a~------------- 221 (286)
T 2p10_A 159 AHKLDLLTTPYVFSPEDAVAMAK--AGADILVCH--MGLTTGGAIGARSGKSMDDCVSLINECIEAA------------- 221 (286)
T ss_dssp HHHTTCEECCEECSHHHHHHHHH--HTCSEEEEE--CSCC---------CCCHHHHHHHHHHHHHHH-------------
T ss_pred HHHCCCeEEEecCCHHHHHHHHH--cCCCEEEEC--CCCCCCCcccCCCcccHHHhHHHHHHHHHHH-------------
Confidence 345664 6779999999998873 468999874 56 544432 222333221100
Q ss_pred hccCCCCCCcEEEEc-CCCCHHhHHHHHHc--CCCeeEeC
Q 002821 817 YENVSNFHVPILAMT-ADVIQATYEECLRS--GMDGYVSK 853 (876)
Q Consensus 817 ~~~~~~~~~pIIalT-a~~~~~~~~~~~~a--G~d~yl~K 853 (876)
...++++.++.-. +-...++...+++. |+++|+.-
T Consensus 222 --~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 222 --RTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp --HHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred --HHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 0013344333333 33678999999999 99999864
No 363
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=22.03 E-value=1.8e+02 Score=29.09 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=47.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEE-EEcCHHHHHHHhC----CCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLM----PPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eA~~~~~----~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|..+|-++.....++..+++.|. .+. ...+..+.+..+. ....||+||+|... .+-..+.+.+..
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~ 178 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRLID 178 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHHHH
Confidence 46899999999999999999998886 243 4567766655441 13579999999653 233445555544
No 364
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=21.83 E-value=4.8e+02 Score=29.30 Aligned_cols=102 Identities=10% Similarity=0.091 Sum_probs=64.3
Q ss_pred CCeEEEEeCC----HHHHHHHHHHHhHcC-CEEE--EEcCHHHHHHHhCCCCCccEEEEeCCCC-----------CCCHH
Q 002821 729 GRKILIVDDN----NVNLKVAAAGLKRYG-AAVV--CVERGKKATELLMPPHQFDACFMDIQMP-----------EMDGF 790 (876)
Q Consensus 729 ~~~ILvVdDn----~~n~~vl~~~L~~~g-~~v~--~a~~g~eA~~~~~~~~~~DlilmDi~MP-----------~mdG~ 790 (876)
+-.++++|.. ......++.+-+.++ ..+. .+.+.+.|..+.. ...|.|...+.-- +...+
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~--aGad~i~vg~g~gsi~~~~~~~g~g~p~~ 345 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIE--AGANVVKVGIGPGSICTTRVVAGVGVPQL 345 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH--HTCSEEEECSSCSTTCCHHHHHCCCCCHH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHH--hCCCEEEECCCCccccccccccCCCCCcH
Confidence 3457777743 334445555555554 3444 4667777777653 4589888643211 12335
Q ss_pred HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 791 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 791 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
+++..+++.-+ ...+|||+--+-....+..+|+.+|++..+.
T Consensus 346 ~~l~~v~~~~~--------------------~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 346 TAVYDCATEAR--------------------KHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHH--------------------TTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHH--------------------hCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 55555544211 1258999999988999999999999998864
No 365
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=21.79 E-value=7.5e+02 Score=26.37 Aligned_cols=95 Identities=14% Similarity=-0.038 Sum_probs=57.9
Q ss_pred CeEEEEeCC----HHHHHHHHHHHhHc-CCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCCCCCC------------HH
Q 002821 730 RKILIVDDN----NVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDIQMPEMD------------GF 790 (876)
Q Consensus 730 ~~ILvVdDn----~~n~~vl~~~L~~~-g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~MP~md------------G~ 790 (876)
..++.+|=. ....+.++.+=+.+ +..|.. +.+.++|..+.. ...|.|...+. |+.. .+
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~--aGaD~I~Vg~g-~G~~~~tr~~~g~g~p~l 189 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLAS--CGADIIKAGIG-GGSVCSTRIKTGFGVPML 189 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHH--TTCSEEEECCS-SSSCHHHHHHHCCCCCHH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHH--cCCCEEEEcCC-CCcCccccccCCccHHHH
Confidence 357777622 22233333333333 566665 788888888763 45899988543 3221 22
Q ss_pred HHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeE
Q 002821 791 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 851 (876)
Q Consensus 791 e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl 851 (876)
+++.++.+ . ..|||+--+-....+..+++.+|+|...
T Consensus 190 ~aI~~~~~-----------------------~-~~PVIAdGGI~~~~di~kALa~GAd~V~ 226 (361)
T 3r2g_A 190 TCIQDCSR-----------------------A-DRSIVADGGIKTSGDIVKALAFGADFVM 226 (361)
T ss_dssp HHHHHHTT-----------------------S-SSEEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHH-----------------------h-CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 33332221 0 1199988888889999999999999765
No 366
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=21.61 E-value=1.3e+02 Score=31.39 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCC
Q 002821 756 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 835 (876)
Q Consensus 756 v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~ 835 (876)
.+.+++-+|+.+.+ ....|+|.+| +|+.-+=-++.+.++. -..+..|+...
T Consensus 211 eVEv~tl~e~~eAl--~aGaDiImLD-n~s~~~l~~av~~~~~--------------------------~v~leaSGGIt 261 (300)
T 3l0g_A 211 AIECDNISQVEESL--SNNVDMILLD-NMSISEIKKAVDIVNG--------------------------KSVLEVSGCVN 261 (300)
T ss_dssp EEEESSHHHHHHHH--HTTCSEEEEE-SCCHHHHHHHHHHHTT--------------------------SSEEEEESSCC
T ss_pred EEEECCHHHHHHHH--HcCCCEEEEC-CCCHHHHHHHHHhhcC--------------------------ceEEEEECCCC
Q ss_pred HHhHHHHHHcCCCee
Q 002821 836 QATYEECLRSGMDGY 850 (876)
Q Consensus 836 ~~~~~~~~~aG~d~y 850 (876)
.+...+..+.|+|.+
T Consensus 262 ~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 262 IRNVRNIALTGVDYI 276 (300)
T ss_dssp TTTHHHHHTTTCSEE
T ss_pred HHHHHHHHHcCCCEE
No 367
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=21.58 E-value=2.9e+02 Score=26.37 Aligned_cols=67 Identities=7% Similarity=0.005 Sum_probs=46.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHcCC-EEEE-EcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRYGA-AVVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~g~-~v~~-a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
.+|.-||=++.....++..++..|. .+.. ..|..+.+.. ....||+|++|.-....+-.++.+.+++
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 4899999999999999999988875 3443 3454443321 2457999999854333445566777754
No 368
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.39 E-value=2.1e+02 Score=24.03 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred EEEEeCCHHHHHHHHHHHhHcCCEEEEEcCHHHHHHHh
Q 002821 732 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 769 (876)
Q Consensus 732 ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eA~~~~ 769 (876)
+|+-|.+..-...++.-+...||+|.-+.+..+|+..+
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkiv 117 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIV 117 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHH
Confidence 34445555556777788888899999999988888765
No 369
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=21.38 E-value=1.3e+02 Score=30.18 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=65.5
Q ss_pred HHHHHHHhHcCCEEEE--EcCHHHHHHHhCCCCCccEEEEeCCC----CC-CCHHHHHHHHHhhcccccccccccccchh
Q 002821 743 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQM----PE-MDGFEATKIIREMEHNFNNRIRRGEVSIE 815 (876)
Q Consensus 743 ~vl~~~L~~~g~~v~~--a~~g~eA~~~~~~~~~~DlilmDi~M----P~-mdG~e~~~~IR~~~~~~~~~~~~g~~~~~ 815 (876)
......|++.|+.+.. +..|...+..+. .-++|.|=+|-.+ .. .....+++.|..+-+.
T Consensus 142 ~~~l~~l~~~G~~ialDdfG~g~ssl~~L~-~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~------------- 207 (259)
T 3s83_A 142 AVILKTLRDAGAGLALDDFGTGFSSLSYLT-RLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQD------------- 207 (259)
T ss_dssp HHHHHHHHHHTCEEEEECC---CHHHHHHH-HSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhHHHHH-hCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHH-------------
Confidence 3345677888997765 446667777774 4579999999522 11 1223344444443211
Q ss_pred hhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCe----eEeCCCCHHHHHHHHHhh
Q 002821 816 AYENVSNFHVPILAMTADVIQATYEECLRSGMDG----YVSKPFEAEQLYREVSRF 867 (876)
Q Consensus 816 ~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~----yl~KP~~~~~L~~~l~~~ 867 (876)
..+.+| ..+-.+.+....+.+.|++- |+.||...+++...+.+.
T Consensus 208 -------~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~~ 255 (259)
T 3s83_A 208 -------LDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEA 255 (259)
T ss_dssp -------TTCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHHS
T ss_pred -------CCCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHHh
Confidence 124444 57777888888999999983 378999999998887764
No 370
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=21.35 E-value=1.6e+02 Score=28.59 Aligned_cols=68 Identities=7% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEE-EEcCHHHHHHHhCCC---CCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eA~~~~~~~---~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|..+|-++.....++..++..|. .+. ...+..+.+..+... ..||+|++|.. ..+-.++.+.+..
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~ 167 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQ 167 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHH
Confidence 45899999999999999999988775 333 345666655444211 57999999864 3333445555554
No 371
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=21.30 E-value=2e+02 Score=27.80 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=46.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC---EEEEEcCHHHHHHHhCC--CCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMP--PHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~---~v~~a~~g~eA~~~~~~--~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|.-+|=++.....++..+++.|. .-....+..+.+..+.. ...||+|++|...+ +-.++.+.+..
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~ 155 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALK 155 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHH
Confidence 45899999999999999999998875 23345677666554421 14699999996532 22344555544
No 372
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=21.11 E-value=2e+02 Score=29.29 Aligned_cols=67 Identities=18% Similarity=0.067 Sum_probs=45.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhHc--C----CEEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCC-----CHHHHHHHHHh
Q 002821 730 RKILIVDDNNVNLKVAAAGLKRY--G----AAVVCVERGKKATELLMPPHQFDACFMDIQMPEM-----DGFEATKIIRE 798 (876)
Q Consensus 730 ~~ILvVdDn~~n~~vl~~~L~~~--g----~~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~m-----dG~e~~~~IR~ 798 (876)
.+|..||=++...++++..+... + -.-....|+.+.+... ...||+|++|.--|.. ..-++.+.+++
T Consensus 100 ~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~ 177 (275)
T 1iy9_A 100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAK 177 (275)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--CCCeeEEEECCCCCCCcchhhhHHHHHHHHHH
Confidence 58999999999999999887531 1 1233566777766542 4679999999865532 12456666655
No 373
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=20.90 E-value=70 Score=33.04 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=29.0
Q ss_pred CCcEEEEcCC------CCHHhHHHHHHcCCCeeEeCCCCHH---HHHHHHHh
Q 002821 824 HVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAE---QLYREVSR 866 (876)
Q Consensus 824 ~~pIIalTa~------~~~~~~~~~~~aG~d~yl~KP~~~~---~L~~~l~~ 866 (876)
++||++|+-. ........|.++|+|+++.--+..+ ++...+++
T Consensus 91 ~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~ 142 (271)
T 1ujp_A 91 EKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQE 142 (271)
T ss_dssp CSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHH
Confidence 5899998622 2245677799999999998766444 34444443
No 374
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=20.84 E-value=33 Score=33.57 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=34.1
Q ss_pred EeCCCCC--CCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEE--EcCCCCHHhHHHHHHcCCCeeEeCCC
Q 002821 780 MDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA--MTADVIQATYEECLRSGMDGYVSKPF 855 (876)
Q Consensus 780 mDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIa--lTa~~~~~~~~~~~~aG~d~yl~KP~ 855 (876)
+++.+|- .+|.+.++.||+. .+..||++ ++.+......+.+.++|+|....-+.
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~----------------------~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKA----------------------HPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHH----------------------STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred EEECcHHHHhhCHHHHHHHHHh----------------------CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc
Confidence 4555542 4567778888763 12457764 55542233377888999988876665
Q ss_pred CH
Q 002821 856 EA 857 (876)
Q Consensus 856 ~~ 857 (876)
..
T Consensus 87 ~~ 88 (207)
T 3ajx_A 87 AD 88 (207)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 375
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.81 E-value=4.3e+02 Score=23.16 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=53.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCEEEEEcCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccc
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 807 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~v~~a~~g-~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 807 (876)
|.+|.++|.++.....+ +..|+.+...+-. .+.++.+ .-..+|+|+.-.. ....-..++..+|+.
T Consensus 29 g~~V~~id~~~~~~~~~----~~~~~~~~~gd~~~~~~l~~~-~~~~~d~vi~~~~-~~~~n~~~~~~a~~~-------- 94 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELL----EDEGFDAVIADPTDESFYRSL-DLEGVSAVLITGS-DDEFNLKILKALRSV-------- 94 (141)
T ss_dssp TCCEEEEESCHHHHHHH----HHTTCEEEECCTTCHHHHHHS-CCTTCSEEEECCS-CHHHHHHHHHHHHHH--------
T ss_pred CCeEEEEECCHHHHHHH----HHCCCcEEECCCCCHHHHHhC-CcccCCEEEEecC-CHHHHHHHHHHHHHh--------
Confidence 45799999998654433 3457776654432 3344444 2346899987543 111123455555553
Q ss_pred cccccchhhhccCCCCCCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 808 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 808 ~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
. ...||+...+ .+......++|+|..+.
T Consensus 95 --------------~-~~~iia~~~~--~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 95 --------------S-DVYAIVRVSS--PKKKEEFEEAGANLVVL 122 (141)
T ss_dssp --------------C-CCCEEEEESC--GGGHHHHHHTTCSEEEE
T ss_pred --------------C-CceEEEEEcC--hhHHHHHHHcCCCEEEC
Confidence 1 3467766643 34556677899976554
No 376
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.73 E-value=2.3e+02 Score=27.24 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=46.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCCE--EE-EEcCHHHHHHHhCCC---CCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMPP---HQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eA~~~~~~~---~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|..+|=++.....++..++..|.. +. ...+..+.+..+... ..||+|++|... .+-.++.+.+..
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~~ 162 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESLK 162 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHHH
Confidence 468999999999999999999988753 43 456776666544221 579999998742 223344555544
No 377
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=20.70 E-value=1.9e+02 Score=30.36 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=43.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHc--C---CEE-EEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCH-----HHHHHHHH
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRY--G---AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIR 797 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~--g---~~v-~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG-----~e~~~~IR 797 (876)
..+|..||=++.....++..+... | -.+ ....|+.+.+.. ....||+|++|.--|.... -++.+.++
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~ 209 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVIITDSSDPVGPAESLFGQSYYELLR 209 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEEEECCC-------------HHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 358999999999999999888653 2 223 345677776654 3467999999985543211 35556665
Q ss_pred h
Q 002821 798 E 798 (876)
Q Consensus 798 ~ 798 (876)
+
T Consensus 210 ~ 210 (314)
T 2b2c_A 210 D 210 (314)
T ss_dssp H
T ss_pred h
Confidence 4
No 378
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=20.69 E-value=3.3e+02 Score=28.11 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=47.7
Q ss_pred EEEEEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCC
Q 002821 755 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 834 (876)
Q Consensus 755 ~v~~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~ 834 (876)
..+.+.+-+++.+.+. ...|+|.+|-.-| -+=-++.+.++.. .+++ .|..++..
T Consensus 197 I~Vev~t~eea~eal~--aGaD~I~LDn~~~-~~~~~~v~~l~~~----------------------~~~v-~ieaSGGI 250 (284)
T 1qpo_A 197 CEVEVDSLEQLDAVLP--EKPELILLDNFAV-WQTQTAVQRRDSR----------------------APTV-MLESSGGL 250 (284)
T ss_dssp EEEEESSHHHHHHHGG--GCCSEEEEETCCH-HHHHHHHHHHHHH----------------------CTTC-EEEEESSC
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEECCCCH-HHHHHHHHHhhcc----------------------CCCe-EEEEECCC
Confidence 4556778899988875 3589999997333 1112233333321 1233 56678999
Q ss_pred CHHhHHHHHHcCCCeeE
Q 002821 835 IQATYEECLRSGMDGYV 851 (876)
Q Consensus 835 ~~~~~~~~~~aG~d~yl 851 (876)
..+...+..+.|+|.+.
T Consensus 251 t~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 251 SLQTAATYAETGVDYLA 267 (284)
T ss_dssp CTTTHHHHHHTTCSEEE
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998764
No 379
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=20.63 E-value=1.1e+02 Score=30.00 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 824 HVPILAMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 824 ~~pIIalTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.+||++..+-.+.++..+++++|+|.++.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 58999888877999999999999998864
No 380
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=20.54 E-value=1.8e+02 Score=30.45 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCcEE--EEcCCCCHHhHHHHHHcCCCeeEe
Q 002821 824 HVPIL--AMTADVIQATYEECLRSGMDGYVS 852 (876)
Q Consensus 824 ~~pII--alTa~~~~~~~~~~~~aG~d~yl~ 852 (876)
.+||+ +-.+-...++..+++++|+|+++.
T Consensus 207 ~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 207 RLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp SCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred CCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 46776 555555899999999999999864
No 381
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=20.34 E-value=5.4e+02 Score=25.98 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred CHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccchhhhccCCCCCCcEEEEcCCCCHHhHH
Q 002821 761 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 840 (876)
Q Consensus 761 ~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~g~~~~~~~~~~~~~~~pIIalTa~~~~~~~~ 840 (876)
+..+.+++.. ...||.|++|++=-..+.-.+...++.... ...++++=....+..+..
T Consensus 25 ~~p~~~e~a~-~~g~D~vilDlEhav~~~~k~~~~l~a~~~---------------------~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 25 YNPDIVRIYA-EAGLDYFIVDCEHAAYTFREINHLVSVAKN---------------------AGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp CCTTHHHHHH-HTTCSEEEEESSSSCCCHHHHHHHHHHHHH---------------------HTCEEEEECSSCCHHHHH
T ss_pred CCHHHHHHHh-cCCcCEEEEeccCCCCCHHHHHHHHHHHhh---------------------cCCeEEEEeCCCCHHHHH
Confidence 3445555553 246999999999888887777777765321 023344433345667899
Q ss_pred HHHHcCCCeeEe-CCCCHHHHHHHHHh
Q 002821 841 ECLRSGMDGYVS-KPFEAEQLYREVSR 866 (876)
Q Consensus 841 ~~~~aG~d~yl~-KP~~~~~L~~~l~~ 866 (876)
.++++|+++.+. |--+.+++...++.
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~ 109 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRL 109 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHH
Confidence 999999998654 44577777766654
No 382
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=20.30 E-value=3.2e+02 Score=26.01 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhHcCC--EEE-EEcCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHh
Q 002821 729 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 798 (876)
Q Consensus 729 ~~~ILvVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eA~~~~~~~~~~DlilmDi~MP~mdG~e~~~~IR~ 798 (876)
+.+|..||-++.....++..++..|. .+. ...+..+.+..+ .. ||+|++|.. ..+-.++.+.++.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~-fD~v~~~~~--~~~~~~~l~~~~~ 148 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ--RD-IDILFMDCD--VFNGADVLERMNR 148 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC--CS-EEEEEEETT--TSCHHHHHHHHGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC--CC-CCEEEEcCC--hhhhHHHHHHHHH
Confidence 45899999999999999999988775 233 445665544332 34 999999954 3444556666654
Done!