Query 002823
Match_columns 876
No_of_seqs 688 out of 2130
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 11:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 8.3E-75 1.8E-79 646.2 26.6 525 92-849 1-529 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 4.8E-46 1E-50 340.6 10.4 97 705-801 1-97 (97)
3 TIGR01659 sex-lethal sex-letha 99.9 7.7E-27 1.7E-31 259.1 20.5 164 142-309 102-277 (346)
4 KOG0148 Apoptosis-promoting RN 99.9 1.5E-26 3.2E-31 240.6 14.2 214 55-309 7-240 (321)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4E-25 8.8E-30 243.8 22.5 159 146-308 2-172 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.2E-25 1.6E-29 241.8 18.6 166 145-310 87-352 (352)
7 TIGR01645 half-pint poly-U bin 99.9 1.5E-24 3.2E-29 253.5 20.0 163 145-307 105-284 (612)
8 TIGR01628 PABP-1234 polyadenyl 99.9 3.9E-24 8.4E-29 251.3 20.4 168 144-311 175-368 (562)
9 KOG0144 RNA-binding protein CU 99.9 6.5E-24 1.4E-28 231.9 14.7 177 145-324 32-225 (510)
10 TIGR01622 SF-CC1 splicing fact 99.9 2.4E-23 5.2E-28 238.1 20.0 163 143-306 85-265 (457)
11 TIGR01628 PABP-1234 polyadenyl 99.9 2.2E-23 4.8E-28 244.9 19.5 291 57-369 3-309 (562)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.3E-23 1.4E-27 237.4 20.1 162 146-308 1-175 (481)
13 KOG0117 Heterogeneous nuclear 99.9 1.1E-22 2.4E-27 223.3 19.8 164 145-311 81-335 (506)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1E-22 2.2E-27 235.7 20.4 164 144-307 272-480 (481)
15 TIGR01648 hnRNP-R-Q heterogene 99.9 3.2E-22 6.9E-27 233.5 18.1 161 146-309 137-309 (578)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.2E-22 1.8E-26 228.2 20.0 162 143-306 171-374 (509)
17 KOG0145 RNA-binding protein EL 99.9 8.5E-22 1.8E-26 203.9 14.0 163 145-311 39-213 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-20 3.9E-25 217.1 20.1 163 145-307 293-502 (509)
19 KOG0131 Splicing factor 3b, su 99.8 5.7E-21 1.2E-25 189.9 12.7 163 145-310 7-180 (203)
20 TIGR01648 hnRNP-R-Q heterogene 99.8 5.9E-20 1.3E-24 214.7 19.1 153 146-308 57-223 (578)
21 KOG0109 RNA-binding protein LA 99.8 9.1E-21 2E-25 199.3 10.2 148 148-307 3-150 (346)
22 TIGR01622 SF-CC1 splicing fact 99.8 1.8E-19 4E-24 206.2 20.0 162 147-308 186-449 (457)
23 KOG0127 Nucleolar protein fibr 99.8 6.9E-20 1.5E-24 204.9 15.5 164 148-311 6-200 (678)
24 KOG0127 Nucleolar protein fibr 99.8 3.1E-19 6.7E-24 199.8 17.3 184 147-330 117-401 (678)
25 KOG0145 RNA-binding protein EL 99.8 3.4E-18 7.3E-23 177.4 15.3 165 143-307 123-358 (360)
26 KOG0123 Polyadenylate-binding 99.8 3E-18 6.6E-23 191.9 16.1 150 148-311 2-157 (369)
27 KOG0124 Polypyrimidine tract-b 99.7 3.6E-18 7.9E-23 183.4 10.7 160 148-307 114-290 (544)
28 KOG0110 RNA-binding protein (R 99.7 1E-17 2.3E-22 192.9 12.6 160 150-309 518-695 (725)
29 KOG4206 Spliceosomal protein s 99.7 7.7E-17 1.7E-21 165.8 15.7 163 143-305 5-220 (221)
30 KOG0123 Polyadenylate-binding 99.7 6.8E-17 1.5E-21 181.1 14.2 234 56-311 3-250 (369)
31 KOG0146 RNA-binding protein ET 99.7 1.3E-16 2.8E-21 166.3 8.2 165 146-310 18-368 (371)
32 KOG0144 RNA-binding protein CU 99.7 2.2E-16 4.7E-21 173.5 10.2 163 146-308 123-505 (510)
33 TIGR01645 half-pint poly-U bin 99.7 2.4E-15 5.3E-20 176.6 19.3 76 145-220 202-282 (612)
34 KOG0148 Apoptosis-promoting RN 99.6 4.2E-16 9.2E-21 163.1 10.6 135 144-308 3-143 (321)
35 KOG4212 RNA-binding protein hn 99.6 2.5E-13 5.4E-18 149.4 32.1 158 147-304 44-291 (608)
36 KOG0105 Alternative splicing f 99.6 1.7E-15 3.6E-20 151.2 13.6 149 145-295 4-176 (241)
37 KOG4205 RNA-binding protein mu 99.6 1.1E-15 2.5E-20 166.8 10.3 162 146-309 5-178 (311)
38 KOG0147 Transcriptional coacti 99.6 1.9E-15 4E-20 170.8 5.9 163 143-306 175-357 (549)
39 KOG0147 Transcriptional coacti 99.5 2E-13 4.4E-18 154.5 11.9 161 148-308 279-529 (549)
40 KOG0106 Alternative splicing f 99.4 8.5E-14 1.8E-18 144.5 6.8 151 148-304 2-168 (216)
41 KOG1457 RNA binding protein (c 99.4 6.5E-13 1.4E-17 136.2 12.7 151 145-295 32-274 (284)
42 PLN03134 glycine-rich RNA-bind 99.4 7.1E-13 1.5E-17 130.8 11.2 81 144-224 31-116 (144)
43 PLN03134 glycine-rich RNA-bind 99.4 9.7E-13 2.1E-17 129.8 10.9 78 231-308 33-115 (144)
44 KOG0110 RNA-binding protein (R 99.4 2.4E-12 5.1E-17 149.3 13.3 161 144-305 382-596 (725)
45 KOG1548 Transcription elongati 99.4 1.2E-11 2.6E-16 133.8 16.1 161 145-305 132-350 (382)
46 KOG1190 Polypyrimidine tract-b 99.3 1.8E-11 4E-16 134.4 14.7 160 147-306 297-490 (492)
47 PF00076 RRM_1: RNA recognitio 99.3 9.7E-12 2.1E-16 104.9 9.4 66 235-300 1-70 (70)
48 PF00076 RRM_1: RNA recognitio 99.3 8.7E-12 1.9E-16 105.2 7.6 66 150-215 1-70 (70)
49 COG0724 RNA-binding proteins ( 99.3 2.4E-11 5.2E-16 124.6 12.3 118 147-264 115-257 (306)
50 KOG1190 Polypyrimidine tract-b 99.3 6.4E-11 1.4E-15 130.2 14.9 165 144-308 147-374 (492)
51 KOG0107 Alternative splicing f 99.2 1.1E-11 2.3E-16 123.6 7.4 77 232-308 10-86 (195)
52 KOG0107 Alternative splicing f 99.2 1.5E-11 3.2E-16 122.7 7.1 78 147-224 10-87 (195)
53 TIGR01659 sex-lethal sex-letha 99.2 3.5E-11 7.6E-16 134.5 10.0 108 230-369 105-217 (346)
54 KOG0120 Splicing factor U2AF, 99.2 7.5E-11 1.6E-15 135.3 11.7 164 145-308 287-493 (500)
55 KOG4211 Splicing factor hnRNP- 99.2 1.6E-10 3.5E-15 129.9 13.7 163 146-311 9-186 (510)
56 KOG0114 Predicted RNA-binding 99.2 1.7E-10 3.7E-15 106.4 10.0 83 231-313 17-101 (124)
57 KOG0125 Ataxin 2-binding prote 99.1 1.2E-10 2.5E-15 125.5 8.7 100 205-308 73-175 (376)
58 KOG0121 Nuclear cap-binding pr 99.1 7.7E-11 1.7E-15 112.3 6.0 77 144-220 33-114 (153)
59 PLN03120 nucleic acid binding 99.1 2.7E-10 5.9E-15 121.5 10.3 74 232-306 4-79 (260)
60 KOG0114 Predicted RNA-binding 99.1 2.6E-10 5.6E-15 105.2 8.7 81 143-223 14-96 (124)
61 PF14259 RRM_6: RNA recognitio 99.1 3.9E-10 8.5E-15 96.3 9.2 66 235-300 1-70 (70)
62 KOG0124 Polypyrimidine tract-b 99.1 7.9E-10 1.7E-14 120.0 13.4 161 145-305 208-533 (544)
63 PLN03120 nucleic acid binding 99.1 4E-10 8.6E-15 120.2 10.2 76 147-223 4-81 (260)
64 PF14259 RRM_6: RNA recognitio 99.1 3.2E-10 6.8E-15 96.9 7.3 66 150-215 1-70 (70)
65 smart00362 RRM_2 RNA recogniti 99.1 7.4E-10 1.6E-14 91.8 9.2 69 234-302 1-72 (72)
66 KOG0122 Translation initiation 99.0 4.7E-10 1E-14 117.0 8.8 78 145-222 187-269 (270)
67 KOG0125 Ataxin 2-binding prote 99.0 4E-10 8.6E-15 121.4 8.3 80 145-224 94-176 (376)
68 KOG0121 Nuclear cap-binding pr 99.0 4E-10 8.7E-15 107.5 6.9 79 231-309 35-118 (153)
69 KOG1456 Heterogeneous nuclear 99.0 3.5E-09 7.7E-14 115.5 14.9 169 139-308 23-200 (494)
70 KOG4660 Protein Mei2, essentia 99.0 3.3E-10 7E-15 129.2 6.9 166 143-311 71-254 (549)
71 PF13893 RRM_5: RNA recognitio 99.0 1.5E-09 3.2E-14 89.5 8.8 56 249-304 1-56 (56)
72 KOG0122 Translation initiation 99.0 7.9E-10 1.7E-14 115.4 8.7 77 231-307 188-269 (270)
73 KOG4212 RNA-binding protein hn 99.0 5E-09 1.1E-13 116.1 15.0 72 233-304 537-608 (608)
74 smart00362 RRM_2 RNA recogniti 99.0 1.4E-09 3.1E-14 90.1 8.2 69 149-217 1-72 (72)
75 KOG0129 Predicted RNA-binding 99.0 4.6E-09 1E-13 119.1 14.6 158 144-305 256-452 (520)
76 KOG0149 Predicted RNA-binding 99.0 6.1E-10 1.3E-14 115.8 6.4 77 143-220 8-89 (247)
77 KOG0113 U1 small nuclear ribon 99.0 1.4E-09 3E-14 116.1 9.1 86 137-222 91-181 (335)
78 KOG0105 Alternative splicing f 99.0 8E-10 1.7E-14 111.0 6.2 77 231-307 5-83 (241)
79 smart00360 RRM RNA recognition 98.9 2.9E-09 6.3E-14 87.8 8.3 66 237-302 1-71 (71)
80 cd00590 RRM RRM (RNA recogniti 98.9 5.3E-09 1.1E-13 87.1 9.7 70 234-303 1-74 (74)
81 KOG0113 U1 small nuclear ribon 98.9 2.8E-09 6.1E-14 113.9 9.6 92 219-310 88-184 (335)
82 PLN03213 repressor of silencin 98.9 2.9E-09 6.4E-14 119.2 9.9 81 231-311 9-92 (759)
83 KOG4207 Predicted splicing fac 98.9 1.3E-09 2.9E-14 111.2 6.5 81 141-221 7-92 (256)
84 KOG0111 Cyclophilin-type pepti 98.9 6.1E-10 1.3E-14 114.3 3.7 80 146-225 9-93 (298)
85 PLN03213 repressor of silencin 98.9 3.1E-09 6.8E-14 119.0 8.9 79 144-222 7-88 (759)
86 KOG0117 Heterogeneous nuclear 98.9 7.6E-09 1.6E-13 115.4 11.5 74 232-305 83-162 (506)
87 PLN03121 nucleic acid binding 98.9 5.8E-09 1.3E-13 110.0 9.9 73 233-306 6-80 (243)
88 smart00360 RRM RNA recognition 98.9 4.9E-09 1.1E-13 86.4 7.4 66 152-217 1-71 (71)
89 KOG4207 Predicted splicing fac 98.9 2.2E-09 4.7E-14 109.7 6.2 75 232-306 13-92 (256)
90 KOG1456 Heterogeneous nuclear 98.9 3.7E-08 8E-13 107.7 15.6 162 145-306 118-362 (494)
91 cd00590 RRM RRM (RNA recogniti 98.9 9.5E-09 2.1E-13 85.6 8.4 70 149-218 1-74 (74)
92 COG0724 RNA-binding proteins ( 98.9 8.8E-09 1.9E-13 105.7 9.9 75 232-306 115-194 (306)
93 PLN03121 nucleic acid binding 98.8 1.2E-08 2.6E-13 107.6 10.1 73 147-220 5-79 (243)
94 PF13893 RRM_5: RNA recognitio 98.8 8E-09 1.7E-13 85.2 6.8 56 164-219 1-56 (56)
95 KOG0130 RNA-binding protein RB 98.8 5.3E-09 1.1E-13 100.7 6.2 76 233-308 73-153 (170)
96 KOG0111 Cyclophilin-type pepti 98.8 2.1E-09 4.6E-14 110.4 3.6 81 231-311 9-94 (298)
97 KOG0149 Predicted RNA-binding 98.8 7.2E-09 1.6E-13 107.9 6.9 77 231-308 11-92 (247)
98 KOG0108 mRNA cleavage and poly 98.8 1E-08 2.3E-13 117.1 8.8 81 233-313 19-104 (435)
99 KOG0112 Large RNA-binding prot 98.8 4.4E-09 9.5E-14 125.0 4.6 159 143-308 368-532 (975)
100 KOG0108 mRNA cleavage and poly 98.8 1.2E-08 2.6E-13 116.6 7.6 77 148-224 19-100 (435)
101 KOG0146 RNA-binding protein ET 98.7 1.5E-08 3.3E-13 106.7 6.6 107 211-322 2-117 (371)
102 KOG0131 Splicing factor 3b, su 98.7 1.6E-08 3.5E-13 101.8 5.9 74 232-305 9-87 (203)
103 KOG0132 RNA polymerase II C-te 98.7 2.6E-08 5.5E-13 117.0 7.8 77 147-224 421-497 (894)
104 KOG0126 Predicted RNA-binding 98.7 2.4E-09 5.2E-14 107.5 -0.5 75 145-219 33-112 (219)
105 KOG4206 Spliceosomal protein s 98.7 3.8E-08 8.3E-13 102.2 7.5 76 233-308 10-91 (221)
106 KOG0109 RNA-binding protein LA 98.7 2.8E-08 6E-13 106.0 6.0 72 234-308 4-75 (346)
107 KOG0130 RNA-binding protein RB 98.6 4.5E-08 9.7E-13 94.4 6.2 79 145-223 70-153 (170)
108 KOG0126 Predicted RNA-binding 98.6 4.2E-09 9.1E-14 105.8 -0.8 74 231-304 34-112 (219)
109 KOG0120 Splicing factor U2AF, 98.6 6.3E-08 1.4E-12 111.6 7.8 162 145-308 173-370 (500)
110 KOG1365 RNA-binding protein Fu 98.6 2.1E-07 4.6E-12 102.2 11.4 165 148-313 162-368 (508)
111 smart00361 RRM_1 RNA recogniti 98.6 1.2E-07 2.6E-12 82.2 7.7 57 246-302 2-70 (70)
112 KOG0132 RNA polymerase II C-te 98.6 1E-07 2.2E-12 112.0 8.7 80 231-311 420-499 (894)
113 KOG4454 RNA binding protein (R 98.5 2.1E-08 4.4E-13 103.4 1.0 141 145-299 7-155 (267)
114 KOG0153 Predicted RNA-binding 98.5 2.5E-07 5.4E-12 101.0 9.0 83 139-222 220-303 (377)
115 KOG0153 Predicted RNA-binding 98.5 2.3E-07 4.9E-12 101.3 8.2 77 229-306 225-302 (377)
116 smart00361 RRM_1 RNA recogniti 98.5 2.7E-07 5.8E-12 79.9 6.4 56 161-216 2-69 (70)
117 KOG2193 IGF-II mRNA-binding pr 98.4 8.2E-08 1.8E-12 106.3 0.8 170 148-330 2-176 (584)
118 KOG4210 Nuclear localization s 98.3 6.4E-07 1.4E-11 98.0 5.5 163 145-308 86-265 (285)
119 KOG4208 Nucleolar RNA-binding 98.2 2.7E-06 5.9E-11 87.6 7.8 80 143-222 45-130 (214)
120 KOG0415 Predicted peptidyl pro 98.2 1.5E-06 3.3E-11 94.8 6.2 79 230-308 237-320 (479)
121 KOG0128 RNA-binding protein SA 98.2 1.7E-07 3.8E-12 111.4 -2.1 139 147-306 667-814 (881)
122 KOG0415 Predicted peptidyl pro 98.1 2.5E-06 5.4E-11 93.2 5.4 79 144-222 236-319 (479)
123 KOG0226 RNA-binding proteins [ 98.1 2.5E-06 5.3E-11 90.1 4.6 161 148-308 97-271 (290)
124 KOG0151 Predicted splicing reg 98.1 7.5E-06 1.6E-10 96.0 8.7 85 137-221 164-256 (877)
125 KOG4454 RNA binding protein (R 98.1 3.1E-06 6.8E-11 87.7 4.8 151 231-382 8-168 (267)
126 KOG4208 Nucleolar RNA-binding 98.1 9.6E-06 2.1E-10 83.6 7.8 78 230-307 47-130 (214)
127 KOG4205 RNA-binding protein mu 98.1 5E-06 1.1E-10 91.8 6.1 114 146-260 96-215 (311)
128 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.1E-05 2.4E-10 92.2 8.0 77 144-220 402-483 (940)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 98.0 5.6E-06 1.2E-10 84.7 4.8 92 702-793 4-100 (176)
130 KOG0151 Predicted splicing reg 97.9 1.2E-05 2.6E-10 94.3 6.5 78 229-306 171-256 (877)
131 KOG0106 Alternative splicing f 97.9 8.2E-06 1.8E-10 85.6 4.0 71 234-307 3-73 (216)
132 KOG1457 RNA binding protein (c 97.9 3.5E-05 7.5E-10 80.2 8.1 80 231-310 33-121 (284)
133 KOG0533 RRM motif-containing p 97.9 3.3E-05 7.2E-10 82.6 7.9 79 143-221 79-161 (243)
134 KOG4661 Hsp27-ERE-TATA-binding 97.9 2.6E-05 5.7E-10 89.3 7.1 75 232-306 405-484 (940)
135 KOG0533 RRM motif-containing p 97.8 7.7E-05 1.7E-09 79.8 8.4 77 232-308 83-163 (243)
136 KOG0116 RasGAP SH3 binding pro 97.7 3.7E-05 8E-10 88.0 6.0 74 147-221 288-366 (419)
137 KOG0116 RasGAP SH3 binding pro 97.7 5.1E-05 1.1E-09 86.9 6.8 75 233-308 289-368 (419)
138 KOG1548 Transcription elongati 97.7 8.1E-05 1.7E-09 81.8 7.5 74 232-305 134-219 (382)
139 KOG4211 Splicing factor hnRNP- 97.7 0.00037 8E-09 79.7 13.0 154 145-300 101-351 (510)
140 PF04059 RRM_2: RNA recognitio 97.6 0.00025 5.4E-09 66.0 8.4 73 148-220 2-85 (97)
141 KOG1365 RNA-binding protein Fu 97.6 0.00064 1.4E-08 75.5 12.7 157 147-305 60-241 (508)
142 PF11608 Limkain-b1: Limkain b 97.6 0.0002 4.3E-09 64.7 7.1 70 148-222 3-77 (90)
143 KOG0226 RNA-binding proteins [ 97.5 7.7E-05 1.7E-09 79.1 4.4 76 145-220 188-268 (290)
144 KOG4307 RNA binding protein RB 97.5 0.0002 4.3E-09 84.2 7.5 165 144-309 308-516 (944)
145 KOG4209 Splicing factor RNPS1, 97.5 0.00012 2.6E-09 78.2 5.3 78 229-307 98-180 (231)
146 KOG4676 Splicing factor, argin 97.4 7.3E-05 1.6E-09 83.0 2.8 157 148-306 8-225 (479)
147 PF11608 Limkain-b1: Limkain b 97.4 0.00063 1.4E-08 61.5 7.8 69 233-306 3-76 (90)
148 KOG4209 Splicing factor RNPS1, 97.3 0.00032 7E-09 74.9 5.1 79 142-221 96-179 (231)
149 PF08777 RRM_3: RNA binding mo 97.2 0.00072 1.6E-08 63.8 5.9 77 234-311 3-84 (105)
150 KOG1855 Predicted RNA-binding 96.8 0.0014 3.1E-08 73.9 5.5 69 227-295 226-312 (484)
151 KOG0128 RNA-binding protein SA 96.8 0.0002 4.3E-09 86.2 -1.4 155 147-302 571-742 (881)
152 COG5175 MOT2 Transcriptional r 96.7 0.0021 4.5E-08 70.6 5.6 75 148-222 115-203 (480)
153 COG5175 MOT2 Transcriptional r 96.7 0.0042 9.1E-08 68.3 7.9 82 232-313 114-209 (480)
154 KOG1995 Conserved Zn-finger pr 96.6 0.0019 4.2E-08 71.7 4.0 77 232-308 66-155 (351)
155 KOG0115 RNA-binding protein p5 96.5 0.0042 9.2E-08 66.3 6.3 87 195-292 5-95 (275)
156 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0058 1.3E-07 50.7 5.6 52 233-286 2-53 (53)
157 KOG1855 Predicted RNA-binding 96.3 0.0038 8.3E-08 70.6 4.4 78 140-217 224-319 (484)
158 PF08777 RRM_3: RNA binding mo 96.3 0.0098 2.1E-07 56.2 6.4 59 148-207 2-60 (105)
159 KOG1295 Nonsense-mediated deca 96.1 0.003 6.6E-08 70.8 2.3 73 703-776 5-79 (376)
160 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.013 2.7E-07 48.7 5.1 52 148-201 2-53 (53)
161 KOG1995 Conserved Zn-finger pr 96.0 0.0055 1.2E-07 68.2 3.8 80 144-223 63-155 (351)
162 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.02 4.4E-07 53.7 6.8 73 232-306 6-91 (100)
163 KOG4307 RNA binding protein RB 95.9 0.018 3.9E-07 68.4 7.4 71 233-303 868-943 (944)
164 KOG4210 Nuclear localization s 95.7 0.0089 1.9E-07 65.9 4.1 79 145-224 182-266 (285)
165 KOG3152 TBP-binding protein, a 95.6 0.0073 1.6E-07 64.6 2.6 68 231-298 73-157 (278)
166 KOG2193 IGF-II mRNA-binding pr 95.4 0.021 4.5E-07 64.6 5.4 88 233-324 2-95 (584)
167 PF08952 DUF1866: Domain of un 95.2 0.066 1.4E-06 53.4 7.8 77 230-310 25-110 (146)
168 KOG2202 U2 snRNP splicing fact 95.2 0.01 2.2E-07 63.6 2.0 65 247-311 83-152 (260)
169 KOG3152 TBP-binding protein, a 95.1 0.017 3.8E-07 61.8 3.6 68 146-213 73-157 (278)
170 KOG0112 Large RNA-binding prot 95.0 0.085 1.9E-06 64.7 9.1 79 143-222 451-531 (975)
171 PF07576 BRAP2: BRCA1-associat 95.0 0.13 2.8E-06 49.2 8.6 85 704-791 11-96 (110)
172 KOG1996 mRNA splicing factor [ 95.0 0.053 1.1E-06 59.1 6.6 63 246-308 300-368 (378)
173 KOG2416 Acinus (induces apopto 94.8 0.035 7.5E-07 65.2 5.2 81 230-311 442-526 (718)
174 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.071 1.5E-06 50.1 5.9 73 146-220 5-90 (100)
175 KOG2314 Translation initiation 94.6 0.058 1.3E-06 63.1 6.2 73 231-303 57-140 (698)
176 KOG0804 Cytoplasmic Zn-finger 94.3 0.13 2.9E-06 58.9 8.2 81 705-789 74-154 (493)
177 KOG2314 Translation initiation 94.0 0.12 2.6E-06 60.7 7.0 71 146-216 57-138 (698)
178 KOG4849 mRNA cleavage factor I 93.9 0.049 1.1E-06 60.4 3.6 70 147-216 80-156 (498)
179 KOG2202 U2 snRNP splicing fact 93.5 0.04 8.8E-07 59.1 2.1 57 163-219 84-145 (260)
180 KOG2416 Acinus (induces apopto 93.1 0.077 1.7E-06 62.5 3.6 79 141-220 438-520 (718)
181 KOG4676 Splicing factor, argin 92.7 0.12 2.7E-06 58.2 4.5 73 233-306 8-88 (479)
182 PF15023 DUF4523: Protein of u 92.4 0.5 1.1E-05 47.1 7.7 77 141-220 80-160 (166)
183 PF15023 DUF4523: Protein of u 92.2 0.53 1.1E-05 47.0 7.5 75 229-306 83-161 (166)
184 PF08952 DUF1866: Domain of un 92.1 0.34 7.3E-06 48.5 6.2 75 144-222 24-107 (146)
185 KOG0129 Predicted RNA-binding 91.8 0.31 6.8E-06 56.9 6.4 63 141-203 364-432 (520)
186 KOG2591 c-Mpl binding protein, 90.5 0.43 9.3E-06 56.1 5.9 78 137-216 165-246 (684)
187 KOG2135 Proteins containing th 90.3 0.27 5.8E-06 56.9 3.9 62 245-308 386-447 (526)
188 KOG2591 c-Mpl binding protein, 90.2 0.62 1.3E-05 54.8 6.9 98 193-302 146-247 (684)
189 KOG2068 MOT2 transcription fac 88.7 0.21 4.6E-06 55.6 1.7 75 148-222 78-163 (327)
190 KOG4849 mRNA cleavage factor I 88.6 0.48 1E-05 52.9 4.3 72 233-304 81-159 (498)
191 KOG1996 mRNA splicing factor [ 88.5 0.74 1.6E-05 50.5 5.5 74 147-220 281-365 (378)
192 PF08675 RNA_bind: RNA binding 87.4 1.8 4E-05 39.6 6.4 54 148-205 10-63 (87)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 84.9 1.6 3.5E-05 45.0 5.5 74 232-305 7-96 (176)
194 PF08675 RNA_bind: RNA binding 84.0 3.9 8.4E-05 37.5 6.8 54 234-291 11-64 (87)
195 KOG4483 Uncharacterized conser 84.0 1.5 3.2E-05 50.0 5.1 53 145-202 389-445 (528)
196 KOG2068 MOT2 transcription fac 83.9 0.47 1E-05 53.0 1.2 80 232-311 77-167 (327)
197 PF10309 DUF2414: Protein of u 83.1 4.3 9.4E-05 35.2 6.4 53 148-204 6-62 (62)
198 PF10309 DUF2414: Protein of u 82.9 5.2 0.00011 34.7 6.8 53 233-289 6-62 (62)
199 PF04847 Calcipressin: Calcipr 82.9 2.1 4.5E-05 44.6 5.4 62 160-222 8-71 (184)
200 PF04847 Calcipressin: Calcipr 82.5 2.6 5.6E-05 43.9 5.9 63 245-308 8-72 (184)
201 KOG4574 RNA-binding protein (c 80.9 1.1 2.3E-05 55.2 2.7 74 234-308 300-375 (1007)
202 KOG0115 RNA-binding protein p5 80.6 1.7 3.7E-05 47.1 3.8 59 148-206 32-94 (275)
203 KOG4285 Mitotic phosphoprotein 79.5 10 0.00022 42.2 9.3 74 232-308 197-271 (350)
204 PF07292 NID: Nmi/IFP 35 domai 77.8 2.8 6.1E-05 38.7 3.9 67 187-253 1-73 (88)
205 PF10567 Nab6_mRNP_bdg: RNA-re 76.7 41 0.00089 37.6 12.9 148 143-291 11-213 (309)
206 PF03880 DbpA: DbpA RNA bindin 75.6 6.3 0.00014 34.7 5.4 59 242-304 11-74 (74)
207 KOG2253 U1 snRNP complex, subu 75.4 2.3 5E-05 51.3 3.3 73 227-303 35-107 (668)
208 KOG4285 Mitotic phosphoprotein 74.0 4.4 9.6E-05 44.9 4.7 62 148-212 198-259 (350)
209 KOG4574 RNA-binding protein (c 73.2 2.4 5.2E-05 52.4 2.7 74 149-223 300-375 (1007)
210 PF14111 DUF4283: Domain of un 68.5 5.9 0.00013 38.8 4.0 108 158-266 28-139 (153)
211 PF07576 BRAP2: BRCA1-associat 64.5 37 0.00081 32.6 8.3 64 233-296 14-81 (110)
212 KOG2135 Proteins containing th 63.0 4.2 9.2E-05 47.4 1.9 76 145-222 370-446 (526)
213 KOG2253 U1 snRNP complex, subu 61.7 6.3 0.00014 47.7 3.1 72 143-218 36-107 (668)
214 KOG2318 Uncharacterized conser 58.0 33 0.00072 41.3 8.0 78 141-218 168-304 (650)
215 PF11767 SET_assoc: Histone ly 55.8 47 0.001 29.2 6.7 55 243-301 11-65 (66)
216 KOG0804 Cytoplasmic Zn-finger 52.2 61 0.0013 38.2 8.7 65 147-211 74-142 (493)
217 PF11767 SET_assoc: Histone ly 49.2 48 0.001 29.1 5.7 55 158-216 11-65 (66)
218 PF03880 DbpA: DbpA RNA bindin 47.2 53 0.0012 28.9 5.8 58 158-219 12-74 (74)
219 KOG2318 Uncharacterized conser 43.3 78 0.0017 38.4 8.0 74 231-304 173-305 (650)
220 KOG2891 Surface glycoprotein [ 36.9 26 0.00056 38.6 2.6 62 148-209 150-247 (445)
221 KOG2891 Surface glycoprotein [ 26.5 25 0.00054 38.7 0.5 75 232-306 149-267 (445)
222 KOG4410 5-formyltetrahydrofola 24.5 1.7E+02 0.0037 32.7 6.2 47 233-280 331-378 (396)
223 KOG4019 Calcineurin-mediated s 24.3 54 0.0012 34.3 2.3 74 148-222 11-90 (193)
224 KOG4483 Uncharacterized conser 24.2 1.6E+02 0.0035 34.3 6.2 55 232-288 391-446 (528)
225 KOG4410 5-formyltetrahydrofola 22.8 1.3E+02 0.0029 33.6 5.0 48 147-195 330-378 (396)
226 KOG4019 Calcineurin-mediated s 21.6 80 0.0017 33.1 2.9 74 233-307 11-90 (193)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.3e-75 Score=646.15 Aligned_cols=525 Identities=45% Similarity=0.621 Sum_probs=383.3
Q ss_pred CCccccccCCCcccc-CCCcchhhccccccccCCCCCCCCcCCccccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhc
Q 002823 92 MDDLDFFSSVGGMDL-GNDSSYVAQKKSEICIGFSNHELGVCNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQ 170 (876)
Q Consensus 92 ~dd~D~F~sgGGmEL-~D~s~s~g~~~~s~~~g~~nG~~~~~ng~~~ge~p~~e~pSrTLFVgNLP~~vTEeeL~elFsq 170 (876)
+||+|+|+++||||| +|.-......+.. ...++.+.+++|.++ +++ || .+|..+|++
T Consensus 1 ~~d~~lf~~~G~~el~~~~~~~~~~~~~~----------~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~ 58 (549)
T KOG4660|consen 1 LEDCDLFSSGGGMELDADSFDNLSVRNSD----------RNSAGFVFPEHPPGE--SRT-FV---------SELSALFEP 58 (549)
T ss_pred CCccccccCCCCCCcccccccchhhcccc----------cCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhc
Confidence 478899999999999 6632221211110 134556778888877 667 88 788899998
Q ss_pred cCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCCCccccccceeEeecCCCCCcHHHHH
Q 002823 171 YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELH 250 (876)
Q Consensus 171 fG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLr 250 (876)
|+ +.+. ++.+.+++.++++|+|.|||.++++++|+
T Consensus 59 ~~----------------------------------~p~~-----------~~np~~~~~~~~~L~v~nl~~~Vsn~~L~ 93 (549)
T KOG4660|consen 59 FN----------------------------------KPLR-----------PDNPSEKDMNQGTLVVFNLPRSVSNDTLL 93 (549)
T ss_pred cC----------------------------------CCCC-----------cCCCCcccCccceEEEEecCCcCCHHHHH
Confidence 81 1111 15566677889999999999999999999
Q ss_pred HHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhHHHHhhcCCchhhhhhcCCCC
Q 002823 251 HIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQ 330 (876)
Q Consensus 251 eiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr~l~qQ~~~q~~q~~~g~~~ 330 (876)
++|+.||+|++|+.+...++.+||+|.|+.+|++|+++|++.+|.|++|+ ++...++.+..|...+. ...
T Consensus 94 ~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~~~~------~~~ 163 (549)
T KOG4660|consen 94 RIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSGTSF------LNH 163 (549)
T ss_pred HHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhcccchh------hhh
Confidence 99999999999999999999999999999999999999999999999999 67777663323333111 112
Q ss_pred CCCCCCCCCCCCcccceeeeccCchhhhHHHHHHhhccccccCCcCcccccCCccccccCCCCCCCCCCcccCCcccCCC
Q 002823 331 QQNSPPNKPTNESAGMITIVISLPLNVKSLAIIYLFTGAFAHGSKSSRITDTCIVSVVPSAVKAPPTESAFHLGISSSVP 410 (876)
Q Consensus 331 ~gsp~~~sp~~~~~~~~~~~fssP~n~~~~~l~~l~~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (876)
.+.|.+++++++|.....+.+-.| ..... +..+.+++
T Consensus 164 ~~~p~a~s~pgg~~~~~~~g~l~P-----------------------------------------~~s~~-~~~~~~~~- 200 (549)
T KOG4660|consen 164 FGSPLANSPPGGWPRGQLFGMLSP-----------------------------------------TRSSI-LLEHISSV- 200 (549)
T ss_pred ccchhhcCCCCCCcCCcceeeecc-----------------------------------------chhhh-hhhcchhc-
Confidence 667888999999864111111111 11000 11111101
Q ss_pred CccccccccCcccccCCCCcccccccccCCCCCCCCCCCccccCCCCCCcccCCCCCCCcccCCCCcccccccccccccC
Q 002823 411 SLVRMESFGTQSALAEPGHLQGQLKFNIRSTPSFHPHSLPECHDGLNKGVRCNSSGTKGANINIKPPEIIDSRHFSRVSS 490 (876)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (876)
-....+...+.-.| |. +. .....-+|.+++...
T Consensus 201 ---~~~~~~~~~~~~~h-----q~-~~--~~~~~~s~a~~~~~~------------------------------------ 233 (549)
T KOG4660|consen 201 ---DGSSPGRETPLLNH-----QR-FV--EFADNRSYAFSEPRG------------------------------------ 233 (549)
T ss_pred ---cCccccccccchhh-----hh-hh--hhccccchhhcccCC------------------------------------
Confidence 00000011111111 00 00 000000112222100
Q ss_pred CCCccccccccCCCCCCCCCCCCCcccCCCCCCCCCCCCccCCCCCCccccccCCCCCccCCCCCCCCccccCcCCCCCC
Q 002823 491 NGHSIGFTEVFGSASNGSCPRPGHQYSWNNSYCPQLPGMMWPNSPSLVSGIFNTYSPTRVHGLPRAPSHMVNTVLPIGSH 570 (876)
Q Consensus 491 ~g~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (876)
|. +.++..++.+++|+ +++| |+++++ + ++-+.+...+||
T Consensus 234 -G~-------~~s~~~~v~t~S~~-------------~g~~-------n~~~~~-r------------~~~~~~~~~~~~ 272 (549)
T KOG4660|consen 234 -GF-------LISNSSGVITFSGP-------------GGVW-------NPFPSR-R------------QRQNSSSSHYEH 272 (549)
T ss_pred -ce-------ecCCCCceEEecCC-------------Cccc-------CCcccc-c------------cccccCcccccC
Confidence 22 23344455555554 2466 344332 1 233344557799
Q ss_pred CccCCCCCCCchhhhccccccCCcccccCcccCcCccccCCC-Cccccccc--ccCccccCCCCCCCCCCCCCCcccccc
Q 002823 571 HVGSAPTVDPSLWERQHAYVAESPEASGFHLGSHGSMRISNN-SLHSVEFV--SHNIFPCVGGNGMDMPLPSKNSVFQSH 647 (876)
Q Consensus 571 ~~gsap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (876)
|||+||+ ..|+.+-+++++.+. ..+.|+-+ ....|.+..|++++.. ++++++.+.
T Consensus 273 hi~~~Ps--------------------~~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~--s~n~~~e~~ 330 (549)
T KOG4660|consen 273 HIGSAPS--------------------MHHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFN--SKNVGMESS 330 (549)
T ss_pred ccCCCcc--------------------cccccccCccccCCCCCCccccccccCCCCccccCccccccc--CCCcccccc
Confidence 9999998 334556677777776 55555444 3446778899999998 999999999
Q ss_pred cccccccCCCCcccccCCCCCCchhhhccccCCCCCCcccccccccchhHHhhCCCCceeEEeecCCCCCCHHHHHHHHH
Q 002823 648 HQRSMMFSGRGQTIPLMNSFDPPNERARNRRNEGAVNQADKKQYELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAID 727 (876)
Q Consensus 648 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id 727 (876)
++....|.++.-+...-.......+.++.||.+....+.+++++.+|+.+|++|++.|||+||||||||||++||++. |
T Consensus 331 ~rv~~~f~~~~~~~~~~~~~~~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d 409 (549)
T KOG4660|consen 331 PRVPKNFEGRRSYTSQNDYPVELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-D 409 (549)
T ss_pred CCCCcccccccccccccccccccccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-h
Confidence 999999988875443333333344577889999887888899999999999999999999999999999999999999 9
Q ss_pred hhCCCcccEEEecccccccceeEEEEEecCCccchHHHHHHhcCccccCCCCccEEEEEeeccccHHHHHHHcccCcccC
Q 002823 728 ERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMN 807 (876)
Q Consensus 728 e~~~g~yDF~Ylp~Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~v~yA~iQG~~ali~~f~~s~v~~ 807 (876)
|.++|+|||+||||||+|+||||||||||++|++|++||++|||++|++|+|+|||+|+|||||||++|++|||||++|+
T Consensus 410 ~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~ 489 (549)
T KOG4660|consen 410 EKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMC 489 (549)
T ss_pred ccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceEEecCCCCCCCcccCCCCCCCccCCCCCcccccc
Q 002823 808 EDKRCRPILFNTDGPNAGDQVPFPMGVNFRTRPGKARSVIHE 849 (876)
Q Consensus 808 ~~~~~rP~~f~~~g~~~g~~~pfp~~~n~~~~~~~~~~~~~~ 849 (876)
|++.|+|++|++ |+.|.++++|...+++.+.+..+.....
T Consensus 490 E~e~y~Pvvf~p--p~dg~~~~~p~~~~~~a~~~~s~~~~~~ 529 (549)
T KOG4660|consen 490 EDEAYRPVVFSP--PEDGREEPEPVKLNQDAGAGHSTNASLK 529 (549)
T ss_pred cchhcCceEecC--cccccccCccccccccCCCCcccchhhh
Confidence 999999999987 8999999999999999877776655443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=4.8e-46 Score=340.64 Aligned_cols=97 Identities=65% Similarity=1.207 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEecccccccceeEEEEEecCCccchHHHHHHhcCccccCCCCccEEE
Q 002823 705 RTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVAS 784 (876)
Q Consensus 705 rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~Ylp~Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~ 784 (876)
|||||||||||||||+||+++||+.|+|+||||||||||+++||+|||||||++++++++|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccHHHHHHHcc
Q 002823 785 LAYARIQGKAALIAHFQ 801 (876)
Q Consensus 785 v~yA~iQG~~ali~~f~ 801 (876)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=7.7e-27 Score=259.10 Aligned_cols=164 Identities=23% Similarity=0.425 Sum_probs=146.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
......++|||+|||+++|+++|+++|++||+|++|+ .+++++|||||+|.++++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3556679999999999999999999999999999887 36778999999999999999999999999999999999
Q ss_pred eecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCC
Q 002823 217 HYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 217 ~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
.|+.+.... ....+|||+|||.++++++|+++|++||+|+.|++ ++++++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~~----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ecccccccc----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 998765432 23568999999999999999999999999999876 456679999999999999999999999
Q ss_pred ceeCC--eEEEEEeecCchh
Q 002823 292 RYIAG--KQIKLEPSHLRGL 309 (876)
Q Consensus 292 ~~I~G--r~IkVs~A~~k~~ 309 (876)
..+.+ ++|+|.+++....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccCCCceeEEEEECCcccc
Confidence 98866 7999999987543
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.5e-26 Score=240.59 Aligned_cols=214 Identities=18% Similarity=0.296 Sum_probs=178.3
Q ss_pred HHHHhcCCCCCC-chhhhcccCCCCCCCCCCCCCCCCCCCccccccCCCccccCCCcchhhccccccccCCCCCCCCcCC
Q 002823 55 EAQTIGNLLPDD-DDLFSGVTDGLECTVHPSGGSGGDDMDDLDFFSSVGGMDLGNDSSYVAQKKSEICIGFSNHELGVCN 133 (876)
Q Consensus 55 e~~~iG~llPdd-dellsgv~d~~~~~~~~~~~s~~dD~dd~D~F~sgGGmEL~D~s~s~g~~~~s~~~g~~nG~~~~~n 133 (876)
..+++|||.++. ||+|+.++..++.+...+ ..-| | + +.+
T Consensus 7 rtlyvgnld~~vte~~i~~lf~qig~v~~~k---~i~~--e-----------~------------------------~v~ 46 (321)
T KOG0148|consen 7 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTK---VIFD--E-----------L------------------------KVN 46 (321)
T ss_pred ceEEeeccChhhHHHHHHHHHHhccccccce---eehh--h-----------h------------------------ccc
Confidence 467899999998 999999999999988777 3222 1 2 111
Q ss_pred cccc-CCCCC-CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccc
Q 002823 134 GAVA-GEHLN-DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQN 206 (876)
Q Consensus 134 g~~~-ge~p~-~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng 206 (876)
|+.. +.... .-.....+||+.|.++++-++|++.|.+||+|.+++ .++|+|||+||.|.+.++|++||..|+|
T Consensus 47 wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG 126 (321)
T KOG0148|consen 47 WATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG 126 (321)
T ss_pred cccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC
Confidence 1110 11111 112256899999999999999999999999998877 5899999999999999999999999999
Q ss_pred cccCCceeeEeecCCCCCCC------------ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEE
Q 002823 207 KLTRSGKLDIHYSIPKDNPS------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYI 274 (876)
Q Consensus 207 ~~l~Gr~L~V~~A~pk~~~~------------ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFV 274 (876)
+.|.+|.|+-.|+..|.... ......++|||+||+.-+++++|++.|++||.|.+||+ -+-+||+||
T Consensus 127 qWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv-Fk~qGYaFV 205 (321)
T KOG0148|consen 127 QWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV-FKDQGYAFV 205 (321)
T ss_pred eeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEE-ecccceEEE
Confidence 99999999999998775322 11235679999999999999999999999999999998 456899999
Q ss_pred EecCHHHHHHHHHHhCCceeCCeEEEEEeecCchh
Q 002823 275 EFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 275 eF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~ 309 (876)
.|++.|+|.+||..+|+.+|.|..|+|.|.+....
T Consensus 206 rF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 206 RFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred EecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999999999999987653
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=4e-25 Score=243.78 Aligned_cols=159 Identities=21% Similarity=0.374 Sum_probs=143.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
+..+|||+|||.++++++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.|+|+.+.|++|+|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467999999999999999999999999999987 357799999999999999999999999999999999999998
Q ss_pred CCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~ 295 (876)
++... ....+|||+|||..+++++|+++|++||.|..+++ ++..++||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76543 23458999999999999999999999999998776 3457899999999999999999999999988
Q ss_pred C--eEEEEEeecCch
Q 002823 296 G--KQIKLEPSHLRG 308 (876)
Q Consensus 296 G--r~IkVs~A~~k~ 308 (876)
| .+|+|.|+..+.
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 788999987654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=7.2e-25 Score=241.78 Aligned_cols=166 Identities=16% Similarity=0.288 Sum_probs=142.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCC--ceeeEe
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIH 217 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G--r~L~V~ 217 (876)
...++|||+|||..+++++|+++|++||.|..++. ++.++|||||+|.+.++|++|++.|+|..+.| ++|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 34679999999999999999999999999988772 46789999999999999999999999999877 578888
Q ss_pred ecCCCCCCCc----------------c-----------------------------------------------------
Q 002823 218 YSIPKDNPSE----------------K----------------------------------------------------- 228 (876)
Q Consensus 218 ~A~pk~~~~e----------------k----------------------------------------------------- 228 (876)
|+........ .
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 8753321000 0
Q ss_pred -------------------ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHH
Q 002823 229 -------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEA 284 (876)
Q Consensus 229 -------------------~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~k 284 (876)
.....+|||+|||.++++++|+++|++||.|++|++ ++.+||||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 000115999999999999999999999999999887 56789999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEeecCchhH
Q 002823 285 ALRELNSRYIAGKQIKLEPSHLRGLR 310 (876)
Q Consensus 285 AL~~LnG~~I~Gr~IkVs~A~~k~~R 310 (876)
|+..|||..|.||+|+|.|...+..|
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCCC
Confidence 99999999999999999999987643
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.5e-24 Score=253.49 Aligned_cols=163 Identities=14% Similarity=0.296 Sum_probs=143.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
...++|||+|||+++++++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.|+|+.+.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3457999999999999999999999999999998 36789999999999999999999999999999999999875
Q ss_pred CCCCCCC-------ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHH
Q 002823 220 IPKDNPS-------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALR 287 (876)
Q Consensus 220 ~pk~~~~-------ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~ 287 (876)
....... .......+|||+||+.++++++|+++|+.||.|+++++ ++..||||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4322111 11123469999999999999999999999999999887 34578999999999999999999
Q ss_pred HhCCceeCCeEEEEEeecCc
Q 002823 288 ELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 288 ~LnG~~I~Gr~IkVs~A~~k 307 (876)
.||+..|+|+.|+|.++.++
T Consensus 265 amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HhCCCeeCCeEEEEEecCCC
Confidence 99999999999999988864
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=3.9e-24 Score=251.31 Aligned_cols=168 Identities=18% Similarity=0.358 Sum_probs=149.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccC----Cceee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR----SGKLD 215 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~----Gr~L~ 215 (876)
....++|||+|||.++|+++|+++|++||+|.+++ .+++++|||||+|.+.++|.+|++.|+++.+. |+.|.
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 34457899999999999999999999999999987 34678999999999999999999999999999 99999
Q ss_pred EeecCCCCCCCc--------------cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEec
Q 002823 216 IHYSIPKDNPSE--------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFY 277 (876)
Q Consensus 216 V~~A~pk~~~~e--------------k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~ 277 (876)
|.++.++.+... ......+|||+||+..+++++|+++|++||.|++|++ ++.++|||||+|.
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 998877654310 0123458999999999999999999999999999887 5667899999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEeecCchhHH
Q 002823 278 DTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 278 d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
+.++|.+|++.|||..+.|++|+|.++.+++.|+
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHH
Confidence 9999999999999999999999999999998776
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.5e-24 Score=231.89 Aligned_cols=177 Identities=20% Similarity=0.351 Sum_probs=150.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccc-cCC--ceeeE
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLDI 216 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~-l~G--r~L~V 216 (876)
...-+|||+-||+.++|.||+++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|+++. |.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4567999999999999999999999999998886 578899999999999999999999999965 665 57888
Q ss_pred eecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCc
Q 002823 217 HYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSR 292 (876)
Q Consensus 217 ~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~ 292 (876)
+|+....+.. ....+|||+-|++.++|.|++++|++||.|++|++ .+.+||||||+|.+.|.|..||++|||.
T Consensus 112 k~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 8886654432 44678999999999999999999999999999887 5678999999999999999999999994
Q ss_pred -eeCC--eEEEEEeecCchhHH--HHhhcCCchhhhh
Q 002823 293 -YIAG--KQIKLEPSHLRGLRK--CLANQLPPELEQE 324 (876)
Q Consensus 293 -~I~G--r~IkVs~A~~k~~Rr--~l~qQ~~~q~~q~ 324 (876)
.+.| .+|.|+|+.+++.|. +++++...+..+.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql 225 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQL 225 (510)
T ss_pred eeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHh
Confidence 4555 799999998877655 5534444444433
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.4e-23 Score=238.06 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=143.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.+.+.++|||+|||..+++++|+++|++||+|..|+. +++++|||||+|.+.++|++|+. |+|+.+.|++|.|+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4566899999999999999999999999999999883 57789999999999999999995 99999999999998
Q ss_pred ecCCCCCCCc--------cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHH
Q 002823 218 YSIPKDNPSE--------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEA 284 (876)
Q Consensus 218 ~A~pk~~~~e--------k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~k 284 (876)
++........ ......+|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8754332211 1123579999999999999999999999999999887 34678999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEeecC
Q 002823 285 ALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 285 AL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
|++.|+|..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999883
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=2.2e-23 Score=244.89 Aligned_cols=291 Identities=17% Similarity=0.200 Sum_probs=197.4
Q ss_pred HHhcCCCCCC-chhhhcccCCCCCCCCCCCCCCCCCCCccccccCCCccccC--CCcchhhccccccccCCCCCCCCcCC
Q 002823 57 QTIGNLLPDD-DDLFSGVTDGLECTVHPSGGSGGDDMDDLDFFSSVGGMDLG--NDSSYVAQKKSEICIGFSNHELGVCN 133 (876)
Q Consensus 57 ~~iG~llPdd-dellsgv~d~~~~~~~~~~~s~~dD~dd~D~F~sgGGmEL~--D~s~s~g~~~~s~~~g~~nG~~~~~n 133 (876)
.++|||-++. ++.|..++..++.+.... ...|.. ....-|..++ ......-.+...++...-.|..-...
T Consensus 3 l~VgnLp~~vte~~L~~~F~~~G~v~~v~---v~~d~~----t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 3 LYVGDLDPDVTEAKLYDLFKPFGPVLSVR---VCRDSV----TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEE---EEecCC----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 4689998886 777777777776554333 222211 1111233321 11111111111222222223222333
Q ss_pred ccccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHcccccc
Q 002823 134 GAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLT 209 (876)
Q Consensus 134 g~~~ge~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l 209 (876)
|+... .........+|||+|||.++++++|+++|++||.|.+|+ .+++++|||||+|.+.++|++|++.++|..+
T Consensus 76 ~s~~~-~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 76 WSQRD-PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc-ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 32211 111223356899999999999999999999999999987 3467899999999999999999999999999
Q ss_pred CCceeeEeecCCCCCCC-ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHH
Q 002823 210 RSGKLDIHYSIPKDNPS-EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEA 284 (876)
Q Consensus 210 ~Gr~L~V~~A~pk~~~~-ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~k 284 (876)
.++.|.|....++.... ......++|||+||+.++++++|+++|+.||+|.++++ ++..+|||||+|.+.++|.+
T Consensus 155 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~ 234 (562)
T TIGR01628 155 NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAK 234 (562)
T ss_pred cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHH
Confidence 99999998776655442 22334568999999999999999999999999999877 44568899999999999999
Q ss_pred HHHHhCCceeC----CeEEEEEeecCchhHHHHhhcCCchhhhhhcCCCCCCCCCCCCCCCCcccceeeeccCchhhhHH
Q 002823 285 ALRELNSRYIA----GKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGMITIVISLPLNVKSL 360 (876)
Q Consensus 285 AL~~LnG~~I~----Gr~IkVs~A~~k~~Rr~l~qQ~~~q~~q~~~g~~~~gsp~~~sp~~~~~~~~~~~fssP~n~~~~ 360 (876)
|++.|+|..+. |+.|.|.++..+.+|.........+..+..... .....-..-+.|.+++..
T Consensus 235 Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~--------------~~~~~l~V~nl~~~~~~~ 300 (562)
T TIGR01628 235 AVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMK--------------AQGVNLYVKNLDDTVTDE 300 (562)
T ss_pred HHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcc--------------cCCCEEEEeCCCCccCHH
Confidence 99999999999 999999999888766411011111111110000 001112334677788888
Q ss_pred HHHHhhccc
Q 002823 361 AIIYLFTGA 369 (876)
Q Consensus 361 ~l~~l~~~~ 369 (876)
.|..+|...
T Consensus 301 ~L~~~F~~~ 309 (562)
T TIGR01628 301 KLRELFSEC 309 (562)
T ss_pred HHHHHHHhc
Confidence 899999764
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=6.3e-23 Score=237.40 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=139.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHc--cccccCCceeeEeecCCCC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL--QNKLTRSGKLDIHYSIPKD 223 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~L--ng~~l~Gr~L~V~~A~pk~ 223 (876)
|+++|||+|||+++++++|+++|++||+|.+|+.. +.|+||||+|.+.++|++|++.+ ++..+.|++|+|+|+..+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~-~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML-PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE-CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 68999999999999999999999999999999853 57899999999999999999874 6788999999999997653
Q ss_pred CCCcc--------ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecC-CcccEEEEEecCHHHHHHHHHHhCCcee
Q 002823 224 NPSEK--------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETP-QKIHQKYIEFYDTRAAEAALRELNSRYI 294 (876)
Q Consensus 224 ~~~ek--------~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg-~skG~AFVeF~d~E~A~kAL~~LnG~~I 294 (876)
..... .....+|||.||+..+++++|+++|+.||+|.+|.+.. ..+++|||+|.+.++|.+|++.|||..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 21111 01223799999999999999999999999999988733 3347999999999999999999999999
Q ss_pred CC--eEEEEEeecCch
Q 002823 295 AG--KQIKLEPSHLRG 308 (876)
Q Consensus 295 ~G--r~IkVs~A~~k~ 308 (876)
.+ ++|+|.|++.+.
T Consensus 160 ~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 160 YNGCCTLKIEYAKPTR 175 (481)
T ss_pred cCCceEEEEEEecCCC
Confidence 64 699999998743
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=223.33 Aligned_cols=164 Identities=22% Similarity=0.415 Sum_probs=141.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccC-CceeeEee
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHY 218 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~-Gr~L~V~~ 218 (876)
.-.+.|||+.||.++.|++|.-+|++.|+|.+++ .++.+||||||.|.+.++|++|++.||+.+|+ ||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4468999999999999999999999999999998 47889999999999999999999999999885 78777744
Q ss_pred cC------------------------------------------------------------------------------
Q 002823 219 SI------------------------------------------------------------------------------ 220 (876)
Q Consensus 219 A~------------------------------------------------------------------------------ 220 (876)
+.
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 31
Q ss_pred ------CCCCCCcccc-ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 221 ------PKDNPSEKEI-NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 221 ------pk~~~~ek~~-~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
|+.+..+... .-+.|||+||+.++|+|.|+++|++||.|..|+. .|.||||+|.++++|.+|++.+||++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk---~rDYaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK---PRDYAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec---ccceeEEeecchHHHHHHHHHhcCce
Confidence 1111111100 2247999999999999999999999999999886 36799999999999999999999999
Q ss_pred eCCeEEEEEeecCchhHH
Q 002823 294 IAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~~Rr 311 (876)
|.|..|.|.+++|.+.++
T Consensus 318 ldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 318 LDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred ecCceEEEEecCChhhhc
Confidence 999999999999987665
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=1e-22 Score=235.69 Aligned_cols=164 Identities=22% Similarity=0.257 Sum_probs=141.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 144 EHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 144 e~pSrTLFVgNLP~-~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
..++++|||+|||+ .+|+++|+++|++||.|.+|+.....+|||||+|.+.++|++|++.|+|..|.|++|+|.++..+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 45788999999998 69999999999999999999965556899999999999999999999999999999999998543
Q ss_pred CCCCc------------c---------------------ccccceeEeecCCCCCcHHHHHHHhhhcCC--eEEEEecCC
Q 002823 223 DNPSE------------K---------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGE--IKEIRETPQ 267 (876)
Q Consensus 223 ~~~~e------------k---------------------~~~~~tLfV~NLP~svTeedLreiFs~fG~--I~sVritg~ 267 (876)
..... + ..+..+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 11000 0 013458999999999999999999999998 888887333
Q ss_pred ---cccEEEEEecCHHHHHHHHHHhCCceeCCeE------EEEEeecCc
Q 002823 268 ---KIHQKYIEFYDTRAAEAALRELNSRYIAGKQ------IKLEPSHLR 307 (876)
Q Consensus 268 ---skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~------IkVs~A~~k 307 (876)
++++|||+|.+.++|.+||..||+..|.++. |+|.|++++
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999874
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=3.2e-22 Score=233.52 Aligned_cols=161 Identities=20% Similarity=0.307 Sum_probs=139.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCC-eEE-EE-----eCCCccceEeeecCCHHHHHHHHHHccc--cccCCceeeE
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGD-VRT-FY-----RASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKLDI 216 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~-I~s-V~-----~tgksrGfAFV~F~d~edA~kAl~~Lng--~~l~Gr~L~V 216 (876)
..++|||+|||+++++++|.++|++++. |.. +. ..++++|||||+|.+.++|.+|++.|+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 3689999999999999999999999863 333 32 2457899999999999999999998864 3578999999
Q ss_pred eecCCCCCCCccc-cccceeEeecCCCCCcHHHHHHHhhhc--CCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 217 HYSIPKDNPSEKE-INQGTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 217 ~~A~pk~~~~ek~-~~~~tLfV~NLP~svTeedLreiFs~f--G~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
.|+.++....+.. ...++|||+||+.++++++|+++|++| |+|+.|++ .++||||+|++.++|++|++.||+..
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 9998876543322 234689999999999999999999999 99999987 36799999999999999999999999
Q ss_pred eCCeEEEEEeecCchh
Q 002823 294 IAGKQIKLEPSHLRGL 309 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~~ 309 (876)
|.|++|+|+|++++..
T Consensus 294 i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDK 309 (578)
T ss_pred ECCEEEEEEEccCCCc
Confidence 9999999999998653
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=8.2e-22 Score=228.22 Aligned_cols=162 Identities=15% Similarity=0.233 Sum_probs=136.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQY------------GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqf------------G~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~ 210 (876)
.....++|||+|||+++|+++|+++|.+| +.|..+.. .+.+|||||+|.+.++|.+|| +|+|..+.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~~ 248 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIYS 248 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEee
Confidence 45667999999999999999999999975 34444444 678999999999999999999 69999999
Q ss_pred CceeeEeecCCCCCCC-------------------------ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-
Q 002823 211 SGKLDIHYSIPKDNPS-------------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE- 264 (876)
Q Consensus 211 Gr~L~V~~A~pk~~~~-------------------------ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri- 264 (876)
|+.|+|.......... .......+|||+|||..+++++|+++|+.||.|+.+.+
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 9999996432211000 00112358999999999999999999999999999776
Q ss_pred ----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 265 ----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 265 ----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
++..+|||||+|.+.++|.+|++.|+|..|.|++|+|.++..
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 466789999999999999999999999999999999999865
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=8.5e-22 Score=203.93 Aligned_cols=163 Identities=21% Similarity=0.373 Sum_probs=148.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.....|.|.-||..+|++||+.+|...|+|++|+ .++.+.||+||.|-++++|++|+..|+|..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3446899999999999999999999999999998 67889999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 002823 220 IPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (876)
Q Consensus 220 ~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I 294 (876)
+|..+.. ....|||.+||..+|..||.++|++||.|..-|+ ++.+||.+||.|+.+++|++||+.|||.+-
T Consensus 119 RPSs~~I----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 119 RPSSDSI----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred cCChhhh----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 9876543 3457999999999999999999999999987554 788999999999999999999999999988
Q ss_pred CC--eEEEEEeecCchhHH
Q 002823 295 AG--KQIKLEPSHLRGLRK 311 (876)
Q Consensus 295 ~G--r~IkVs~A~~k~~Rr 311 (876)
.| .+|.|+|+....+++
T Consensus 195 ~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKT 213 (360)
T ss_pred CCCCCCeEEEecCCccccc
Confidence 76 799999998876665
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=1.8e-20 Score=217.07 Aligned_cols=163 Identities=18% Similarity=0.305 Sum_probs=136.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
...++|||+|||..+++++|+++|++||.|..+. .+++++|||||+|.+.++|.+|++.|+|..|.|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999998876 35779999999999999999999999999999999999998
Q ss_pred CCCCCCCc------------------------cccccceeEeecCCCC--C--------cHHHHHHHhhhcCCeEEEEec
Q 002823 220 IPKDNPSE------------------------KEINQGTLVVFNLDSS--V--------SNDELHHIFGVYGEIKEIRET 265 (876)
Q Consensus 220 ~pk~~~~e------------------------k~~~~~tLfV~NLP~s--v--------TeedLreiFs~fG~I~sVrit 265 (876)
........ ...+..+|+|.|+... + ..++|+++|++||.|+.|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 54321100 0123567899999632 1 236799999999999999883
Q ss_pred C--------CcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 266 P--------QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 266 g--------~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
. ..+|++||+|.++++|++|+..|||..|.|+.|.|.|....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 1 23589999999999999999999999999999999998653
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=5.7e-21 Score=189.90 Aligned_cols=163 Identities=20% Similarity=0.294 Sum_probs=143.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
....||||+||+..++++.|.++|-+.|+|..++ .+.+.+|||||+|.++|+|+-|++-|+...+.||+|+|.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3457999999999999999999999999999998 56789999999999999999999999999999999999887
Q ss_pred CCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEE----EEe--cCCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 220 IPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE----IRE--TPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 220 ~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~s----Vri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
... ..+......|||+||++.+++..|.+.|+.||.|.. ++. ++.+++||||.|.+.|.+.+|+..+||..
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 621 112223468999999999999999999999999876 232 67889999999999999999999999999
Q ss_pred eCCeEEEEEeecCchhH
Q 002823 294 IAGKQIKLEPSHLRGLR 310 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~~R 310 (876)
++.++|.|.++..++.+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999876533
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.83 E-value=5.9e-20 Score=214.67 Aligned_cols=153 Identities=20% Similarity=0.291 Sum_probs=132.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccC-CceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~-Gr~L~V~~A~ 220 (876)
..++|||+|||++++|++|+++|++||.|.+++ .++++||||||+|.+.++|++|++.|++..+. ++.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 458999999999999999999999999999987 36789999999999999999999999999885 7888776653
Q ss_pred CCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCC-eEEEEe------cCCcccEEEEEecCHHHHHHHHHHhCC--
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRE------TPQKIHQKYIEFYDTRAAEAALRELNS-- 291 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~-I~sVri------tg~skG~AFVeF~d~E~A~kAL~~LnG-- 291 (876)
..++|||+|||.++++++|++.|++++. |+++.+ ..+.++||||+|.+.++|.+|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 2468999999999999999999999974 333322 235689999999999999999998864
Q ss_pred ceeCCeEEEEEeecCch
Q 002823 292 RYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 292 ~~I~Gr~IkVs~A~~k~ 308 (876)
..+.|+.|+|+|+.++.
T Consensus 207 i~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEE 223 (578)
T ss_pred eEecCceEEEEeecccc
Confidence 46789999999998754
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=9.1e-21 Score=199.28 Aligned_cols=148 Identities=24% Similarity=0.343 Sum_probs=138.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCCCc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSE 227 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~e 227 (876)
-+|||+|||.++++.+|+.+|++||+|.+|.+ -|.||||..++...|+.|++.|++..|+|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999986 56799999999999999999999999999999999887662
Q ss_pred cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 228 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 228 k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
+...+|+|+||.+.++.+||+..|++||.|.+++| -|+|+||.|+..++|..|++.||+.++.|++++|..+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 34678999999999999999999999999999998 4789999999999999999999999999999999998764
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.82 E-value=1.8e-19 Score=206.16 Aligned_cols=162 Identities=22% Similarity=0.333 Sum_probs=137.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
.++|||+|||..+++++|+++|++||.|..|.. +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999998872 457899999999999999999999999999999999999531
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 002823 222 KDNPS--------------------------------------------------------------------------- 226 (876)
Q Consensus 222 k~~~~--------------------------------------------------------------------------- 226 (876)
.....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 10000
Q ss_pred ---------c--cccccceeEeecCCCCCc----------HHHHHHHhhhcCCeEEEEec-CCcccEEEEEecCHHHHHH
Q 002823 227 ---------E--KEINQGTLVVFNLDSSVS----------NDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDTRAAEA 284 (876)
Q Consensus 227 ---------e--k~~~~~tLfV~NLP~svT----------eedLreiFs~fG~I~sVrit-g~skG~AFVeF~d~E~A~k 284 (876)
. .......|+|.||....+ .+||++.|++||.|+.|.+. +...|++||+|.+.++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 001335788888855433 36899999999999999884 7778999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEeecCch
Q 002823 285 ALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 285 AL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
|++.|||..++|+.|.|.|.....
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEcHHH
Confidence 999999999999999999987654
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=6.9e-20 Score=204.89 Aligned_cols=164 Identities=16% Similarity=0.284 Sum_probs=144.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
.||||++||+.++.++|.++|+.+|+|..++ .+..+|||+||.|.-.+++++|++...+..+.|+.|+|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999999887 23458999999999999999999999999999999999998766
Q ss_pred CCCCcc----------------------ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEe
Q 002823 223 DNPSEK----------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEF 276 (876)
Q Consensus 223 ~~~~ek----------------------~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF 276 (876)
....+. +.+.-+|.|+|||+.+...+|+.+|+.||.|.+|.| .+.-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 432200 002348999999999999999999999999999998 333459999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeEEEEEeecCchhHH
Q 002823 277 YDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 277 ~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
.+..+|.+|++.+|+.+|.||+|-|.|+.+++.-+
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 99999999999999999999999999999987443
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=3.1e-19 Score=199.77 Aligned_cols=184 Identities=18% Similarity=0.330 Sum_probs=151.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
--.|.|+|||+.+.+.+|+.+|++||.|..|.+ .++-.|||||.|.+..+|.+|++.+|+..|.||+|.|.||.+|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 568999999999999999999999999999983 4556699999999999999999999999999999999999665
Q ss_pred CCCCc-----------------------------------------c--c------------------------------
Q 002823 223 DNPSE-----------------------------------------K--E------------------------------ 229 (876)
Q Consensus 223 ~~~~e-----------------------------------------k--~------------------------------ 229 (876)
+.... . +
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 31000 0 0
Q ss_pred -------------cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHh--
Q 002823 230 -------------INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALREL-- 289 (876)
Q Consensus 230 -------------~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~L-- 289 (876)
....+|||+|||+++|+++|.+.|++||+|.++.+ +++++|.|||.|.+..+|.+||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 01148999999999999999999999999999665 8889999999999999999999977
Q ss_pred ---CC-ceeCCeEEEEEeecCchhHHHHhhcCCchhhhhhcCCCC
Q 002823 290 ---NS-RYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQ 330 (876)
Q Consensus 290 ---nG-~~I~Gr~IkVs~A~~k~~Rr~l~qQ~~~q~~q~~~g~~~ 330 (876)
.| ..+.||.|+|..+..+++...|++.........-+.+|+
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyL 401 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYL 401 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceee
Confidence 34 678999999999999887665644422223333344444
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=3.4e-18 Score=177.44 Aligned_cols=165 Identities=15% Similarity=0.274 Sum_probs=140.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCC--ceee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLD 215 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G--r~L~ 215 (876)
+......|||.+||+.+|..||+.+|++||.|..-+ .++.+||.+||.|...++|++|++.|+|..-.| .+|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 345567999999999999999999999999886544 678999999999999999999999999988655 5788
Q ss_pred EeecCCCCCCC------------------------ccc----------------------------------c-ccceeE
Q 002823 216 IHYSIPKDNPS------------------------EKE----------------------------------I-NQGTLV 236 (876)
Q Consensus 216 V~~A~pk~~~~------------------------ek~----------------------------------~-~~~tLf 236 (876)
|+|+....... .+. . ..-.||
T Consensus 203 VKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF 282 (360)
T KOG0145|consen 203 VKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF 282 (360)
T ss_pred EEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE
Confidence 98874321100 000 0 112899
Q ss_pred eecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 237 VFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 237 V~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
|.||.++.++.-|+++|.+||.|..|++ +.+.|||+||.+.+.++|..||..|||..+++|.|.|.|...+
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999887 5678999999999999999999999999999999999998764
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3e-18 Score=191.95 Aligned_cols=150 Identities=19% Similarity=0.331 Sum_probs=136.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~ 224 (876)
..|||+ +++|+..|.++|+++|+|.+++ ... +.|||||.|.++++|++|+++++...+.|++|+|-|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 468999 9999999999999999999887 334 999999999999999999999999999999999999864322
Q ss_pred CCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 002823 225 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (876)
Q Consensus 225 ~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkV 301 (876)
.|||.||+++++..+|.++|+.||+|.+|++ ....+|| ||+|++.++|.+|+..+||..+.|++|.|
T Consensus 78 ---------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 78 ---------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred ---------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 2999999999999999999999999999988 2237889 99999999999999999999999999999
Q ss_pred EeecCchhHH
Q 002823 302 EPSHLRGLRK 311 (876)
Q Consensus 302 s~A~~k~~Rr 311 (876)
....++..|.
T Consensus 148 g~~~~~~er~ 157 (369)
T KOG0123|consen 148 GLFERKEERE 157 (369)
T ss_pred eeccchhhhc
Confidence 9999887664
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.6e-18 Score=183.45 Aligned_cols=160 Identities=15% Similarity=0.327 Sum_probs=140.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
+.|||+.|.+++.|+.|+..|..||+|++|. .++++||||||+|+-+|.|+-|++.|||..++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6899999999999999999999999999998 68999999999999999999999999999999999999743211
Q ss_pred CC--C-----CccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhC
Q 002823 223 DN--P-----SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELN 290 (876)
Q Consensus 223 ~~--~-----~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~Ln 290 (876)
.. + .+....-.+|||..+.++++++||+.+|+.||+|++|.+ ....|||+||||.+..+-..|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 11 1 011224569999999999999999999999999999998 34568999999999999999999999
Q ss_pred CceeCCeEEEEEeecCc
Q 002823 291 SRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 291 G~~I~Gr~IkVs~A~~k 307 (876)
-..++|.-|+|..+...
T Consensus 274 lFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhhcccceEecccccCC
Confidence 99999999999876553
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=1e-17 Score=192.92 Aligned_cols=160 Identities=22% Similarity=0.366 Sum_probs=139.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC--------CccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 150 LLLRKINSNIEDSELKALFEQYGDVRTFYRAS--------KHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 150 LFVgNLP~~vTEeeL~elFsqfG~I~sV~~tg--------ksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
|||.||+++.+.++|..+|.++|.|.++.+.. .+.|||||+|.+.++|++|++.|+|+.|.|+.|.|+++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 99999999999999999999999999996311 1449999999999999999999999999999999999972
Q ss_pred CCCC-----CccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCC-----cccEEEEEecCHHHHHHHHHHhCC
Q 002823 222 KDNP-----SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ-----KIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 222 k~~~-----~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~-----skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
+... .......+.|+|+|||...+..+++++|..||.|++|++..+ .+|||||+|-+.++|.+|+.+|..
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S 677 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS 677 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc
Confidence 2211 111123468999999999999999999999999999998332 478999999999999999999999
Q ss_pred ceeCCeEEEEEeecCchh
Q 002823 292 RYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 292 ~~I~Gr~IkVs~A~~k~~ 309 (876)
..+.||+|.++|+.....
T Consensus 678 THlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 678 THLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cceechhhheehhccchH
Confidence 999999999999988653
No 29
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=7.7e-17 Score=165.83 Aligned_cols=163 Identities=24% Similarity=0.384 Sum_probs=145.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHH----HhhccCCeEEEE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKA----LFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~e----lFsqfG~I~sV~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
+..|..||||.||+..+..++|++ +|++||.|..|. .+.+.||.|||.|.+.+.|-.|+++|+|..+.|+.++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445667999999999999999987 999999999998 67889999999999999999999999999999999999
Q ss_pred eecCCCCCCCcc----------------------------------------------ccccceeEeecCCCCCcHHHHH
Q 002823 217 HYSIPKDNPSEK----------------------------------------------EINQGTLVVFNLDSSVSNDELH 250 (876)
Q Consensus 217 ~~A~pk~~~~ek----------------------------------------------~~~~~tLfV~NLP~svTeedLr 250 (876)
+||..+.+...+ ..+..+||+.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 999665332111 1244589999999999999999
Q ss_pred HHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEeec
Q 002823 251 HIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSH 305 (876)
Q Consensus 251 eiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~-Gr~IkVs~A~ 305 (876)
.+|.+|...++|++....++.|||+|.+...|..|...+.+..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999998888899999999999999999999999887 7888888875
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=6.8e-17 Score=181.14 Aligned_cols=234 Identities=15% Similarity=0.234 Sum_probs=179.6
Q ss_pred HHHhcCCCCCC-chhhhcccCCCCCCCCCCCCCCCCCCCccccccCCCcccc--CCCcchhhccccccccCCCCCCCCcC
Q 002823 56 AQTIGNLLPDD-DDLFSGVTDGLECTVHPSGGSGGDDMDDLDFFSSVGGMDL--GNDSSYVAQKKSEICIGFSNHELGVC 132 (876)
Q Consensus 56 ~~~iG~llPdd-dellsgv~d~~~~~~~~~~~s~~dD~dd~D~F~sgGGmEL--~D~s~s~g~~~~s~~~g~~nG~~~~~ 132 (876)
..++| |+. +..|-+.+...+.+..+. -..| . + +-|... .........+...++.....|...+.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~r---vc~d-----~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ri 69 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIR---VCRD-----A-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRI 69 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEE---Eeec-----C-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEe
Confidence 34667 776 777777777777666665 3332 2 2 334333 22223333444455554455554454
Q ss_pred CccccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCccceEeeecCCHHHHHHHHHHcccccc
Q 002823 133 NGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLT 209 (876)
Q Consensus 133 ng~~~ge~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~---tgksrGfAFV~F~d~edA~kAl~~Lng~~l 209 (876)
-|... +++ .|||.||++++|..+|.++|+.||.|.+|+. ..-++|| ||+|.++++|++|++.+||..+
T Consensus 70 m~s~r-------d~~-~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 70 MWSQR-------DPS-LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred ehhcc-------CCc-eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 44421 222 2999999999999999999999999999992 2338999 9999999999999999999999
Q ss_pred CCceeeEeecCCCCCCCccc----cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHH
Q 002823 210 RSGKLDIHYSIPKDNPSEKE----INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRA 281 (876)
Q Consensus 210 ~Gr~L~V~~A~pk~~~~ek~----~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~ 281 (876)
.+++|.|.....+..+.... ..-..++|.|++.++++++|..+|..||.|..+.+ .+++++|+||+|++.++
T Consensus 141 ~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 99999998887765543222 23448999999999999999999999999999776 45578999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeecCchhHH
Q 002823 282 AEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 282 A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
|..|++.|++..+.++.+.|..+..+.++.
T Consensus 221 a~~av~~l~~~~~~~~~~~V~~aqkk~e~~ 250 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGDKELYVGRAQKKSERE 250 (369)
T ss_pred HHHHHHhccCCcCCccceeecccccchhhH
Confidence 999999999999999999999998866665
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.3e-16 Score=166.26 Aligned_cols=165 Identities=17% Similarity=0.324 Sum_probs=139.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccc-cCC--ceeeEee
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLDIHY 218 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~-l~G--r~L~V~~ 218 (876)
..|+|||+-|.+.-.|+|++.+|..||.|.+|. ..+.+||||||.|.+..+|+.||..|+|.. +.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 468999999999999999999999999999988 467899999999999999999999999964 444 3455655
Q ss_pred cCCCCCCCc-----------------------------------------------------------------------
Q 002823 219 SIPKDNPSE----------------------------------------------------------------------- 227 (876)
Q Consensus 219 A~pk~~~~e----------------------------------------------------------------------- 227 (876)
+...+++.-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 422211000
Q ss_pred --------------------------------------------------------------------------------
Q 002823 228 -------------------------------------------------------------------------------- 227 (876)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (876)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred -----------------------cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCH
Q 002823 228 -----------------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDT 279 (876)
Q Consensus 228 -----------------------k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~ 279 (876)
..+..+.|||..||....+.||.+.|-.||.|++.++ +..+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0003358999999999999999999999999999655 778999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEeecCchhH
Q 002823 280 RAAEAALRELNSRYIAGKQIKLEPSHLRGLR 310 (876)
Q Consensus 280 E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~R 310 (876)
.+|++||.+|||..|+-|+|+|.+.++|++.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999998754
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.2e-16 Score=173.46 Aligned_cols=163 Identities=16% Similarity=0.348 Sum_probs=141.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccc-cCC--ceeeEee
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLDIHY 218 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~-l~G--r~L~V~~ 218 (876)
..++|||+-|++.++|.|++++|.+||.|++|+ ..+.+||||||+|.+.|.|..||++||+.. +.| .+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 368999999999999999999999999999998 457899999999999999999999999965 655 5899999
Q ss_pred cCCCCCCCcccc--------------------------------------------------------------------
Q 002823 219 SIPKDNPSEKEI-------------------------------------------------------------------- 230 (876)
Q Consensus 219 A~pk~~~~ek~~-------------------------------------------------------------------- 230 (876)
+.+++++..+..
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 876654211000
Q ss_pred --------------------------------------------------------------------------------
Q 002823 231 -------------------------------------------------------------------------------- 230 (876)
Q Consensus 231 -------------------------------------------------------------------------------- 230 (876)
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence
Q ss_pred ------------------------------------------------------------ccceeEeecCCCCCcHHHHH
Q 002823 231 ------------------------------------------------------------NQGTLVVFNLDSSVSNDELH 250 (876)
Q Consensus 231 ------------------------------------------------------------~~~tLfV~NLP~svTeedLr 250 (876)
....|||.+||.+.-+.+|.
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 12379999999999999999
Q ss_pred HHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 251 HIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 251 eiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..|..||.|++.++ ++-+|.|+||.|++..+|..||..|||..|+.++++|...+.+.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999998554 67789999999999999999999999999999999999988764
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=2.4e-15 Score=176.61 Aligned_cols=76 Identities=14% Similarity=0.348 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
...++|||+|||+++++++|+++|++||+|.+++ .++++||||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3457999999999999999999999999999987 35679999999999999999999999999999999999776
Q ss_pred C
Q 002823 220 I 220 (876)
Q Consensus 220 ~ 220 (876)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 5
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.2e-16 Score=163.09 Aligned_cols=135 Identities=20% Similarity=0.390 Sum_probs=113.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~ 223 (876)
+...|||||+||+++|||+-|..||.+.|.|+.+++- |+ .|+|.|+....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCcc
Confidence 3456899999999999999999999999999998741 11 44555654433
Q ss_pred CCCccccc-cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 002823 224 NPSEKEIN-QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (876)
Q Consensus 224 ~~~ek~~~-~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr 297 (876)
........ .-.+||+.|...++.++|++.|.+||+|.+.|+ +.++|||+||.|.+.++|++||..|||..|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 33222222 338999999999999999999999999998766 788999999999999999999999999999999
Q ss_pred EEEEEeecCch
Q 002823 298 QIKLEPSHLRG 308 (876)
Q Consensus 298 ~IkVs~A~~k~ 308 (876)
.|+-.|+.+|-
T Consensus 133 ~IRTNWATRKp 143 (321)
T KOG0148|consen 133 TIRTNWATRKP 143 (321)
T ss_pred eeeccccccCc
Confidence 99999998876
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.65 E-value=2.5e-13 Score=149.43 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=131.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFE-QYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFs-qfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
.|.+||.|||+++...+|++||. +.|+|+.|. ..+|.||||.|+|+++|.+++|++.|+...+.||+|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46799999999999999999998 788999887 6799999999999999999999999999999999999843211
Q ss_pred ----------------------------------------------CCC-CCc---------------------------
Q 002823 222 ----------------------------------------------KDN-PSE--------------------------- 227 (876)
Q Consensus 222 ----------------------------------------------k~~-~~e--------------------------- 227 (876)
+++ ...
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 000
Q ss_pred -------cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 228 -------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 228 -------k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
..+...++||.||...+..+.|++.|.-.|+|..|.+ .+.+++++.++|..+-+|..||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 0002347999999999999999999999999988665 56678999999999999999999999877777
Q ss_pred eEEEEEee
Q 002823 297 KQIKLEPS 304 (876)
Q Consensus 297 r~IkVs~A 304 (876)
++..+...
T Consensus 284 ~~~~~Rl~ 291 (608)
T KOG4212|consen 284 RRMTVRLD 291 (608)
T ss_pred ccceeecc
Confidence 77666653
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.7e-15 Score=151.21 Aligned_cols=149 Identities=18% Similarity=0.253 Sum_probs=127.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCC--ccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASK--HCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgk--srGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
..+++|||+|||.++.+.+|+++|-+||.|+.|..... .-.||||+|+++.+|+.||..-+|..+.|..|+|+|+..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999984333 4689999999999999999999999999999999998654
Q ss_pred CCCC----------------------ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHH
Q 002823 223 DNPS----------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTR 280 (876)
Q Consensus 223 ~~~~----------------------ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E 280 (876)
.... ........|.|.+||++.+++||++++.+-|.|....+. ..+++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 2110 111244589999999999999999999999999987764 3469999999999
Q ss_pred HHHHHHHHhCCceeC
Q 002823 281 AAEAALRELNSRYIA 295 (876)
Q Consensus 281 ~A~kAL~~LnG~~I~ 295 (876)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999887764
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.62 E-value=1.1e-15 Score=166.80 Aligned_cols=162 Identities=10% Similarity=0.269 Sum_probs=141.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
..++|||++|+++++++.|++.|.+||+|..+. .+++++||+||+|.+++...+++.. ....|.|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999987 4688999999999999999988843 4467999999999999
Q ss_pred CCCCCCcccc--ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 221 PKDNPSEKEI--NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 221 pk~~~~ek~~--~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
++.+..+... ...+|||++||.+++++++++.|.+||.|..+.+ +.+.++|+||.|.+++.+.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8876654333 3569999999999999999999999998877544 55678999999999999999876 67789
Q ss_pred eCCeEEEEEeecCchh
Q 002823 294 IAGKQIKLEPSHLRGL 309 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~~ 309 (876)
|.|+.+.|..|.+++.
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999999999763
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.57 E-value=1.9e-15 Score=170.79 Aligned_cols=163 Identities=22% Similarity=0.310 Sum_probs=140.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.++..||+|+--|+..++..+|.++|+.+|+|+.|. .++.++|.|||+|.|.+....|+ .|.|+.+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 445579999999999999999999999999999987 46779999999999999999999 799999999999997
Q ss_pred ecCCCCCCCcc----------ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHH
Q 002823 218 YSIPKDNPSEK----------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAA 282 (876)
Q Consensus 218 ~A~pk~~~~ek----------~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A 282 (876)
......+.... ..+-..|||+||-.++++++|+.+|+.||.|..|.+ ++..+||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 76433221100 001123999999999999999999999999999776 677899999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEeecC
Q 002823 283 EAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 283 ~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.+|+..|||.+|.|+.|+|.....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHhccceecCceEEEEEeee
Confidence 999999999999999999887654
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.47 E-value=2e-13 Score=154.52 Aligned_cols=161 Identities=20% Similarity=0.329 Sum_probs=128.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
+.|||+||-.++++++|+.+|+.||+|..|. .++.++||+||+|.+.++|++|++.|||..|-|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3499999999999999999999999999987 38999999999999999999999999999999999998443211
Q ss_pred CCCCcc-------c------------------------------------------------------------------
Q 002823 223 DNPSEK-------E------------------------------------------------------------------ 229 (876)
Q Consensus 223 ~~~~ek-------~------------------------------------------------------------------ 229 (876)
-...+. +
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 000000 0
Q ss_pred --cccceeEeecCCC--CCc--------HHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 002823 230 --INQGTLVVFNLDS--SVS--------NDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (876)
Q Consensus 230 --~~~~tLfV~NLP~--svT--------eedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr 297 (876)
.++.++.+.|+=. ..| .+|+.+.+.+||+|..|.++..+-|+.||.|.+.++|..|+++|||..|.||
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr 518 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGR 518 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccc
Confidence 0111223333311 111 2678889999999999999888889999999999999999999999999999
Q ss_pred EEEEEeecCch
Q 002823 298 QIKLEPSHLRG 308 (876)
Q Consensus 298 ~IkVs~A~~k~ 308 (876)
.|.+.|-....
T Consensus 519 ~Ita~~~~~~~ 529 (549)
T KOG0147|consen 519 MITAKYLPLER 529 (549)
T ss_pred eeEEEEeehhh
Confidence 99999976543
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=8.5e-14 Score=144.49 Aligned_cols=151 Identities=21% Similarity=0.347 Sum_probs=130.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCC--
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP-- 225 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~-- 225 (876)
..+||++||+.+.+.+|.++|..||.|..+.+ ..||+||.|.+..+|..|+..++++.|.+..+.|+|+..+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 36899999999999999999999999999876 4578899999999999999999999999988999998753110
Q ss_pred ----C----------ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC
Q 002823 226 ----S----------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 226 ----~----------ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
. ........++|.++...+.+.+|.+.|..+|++.+... ..+++||+|.+.++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 0 00123447899999999999999999999999965544 678999999999999999999999
Q ss_pred ceeCCeEEEEEee
Q 002823 292 RYIAGKQIKLEPS 304 (876)
Q Consensus 292 ~~I~Gr~IkVs~A 304 (876)
..+.+++|.+...
T Consensus 156 ~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 156 KKLNGRRISVEKN 168 (216)
T ss_pred hhhcCceeeeccc
Confidence 9999999999443
No 41
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=6.5e-13 Score=136.20 Aligned_cols=151 Identities=17% Similarity=0.277 Sum_probs=119.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCc----cceEeeecCCHHHHHHHHHHccccccC---Cceee
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKH----CGFVTISYYDIRAARNAMKSLQNKLTR---SGKLD 215 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~--~tgks----rGfAFV~F~d~edA~kAl~~Lng~~l~---Gr~L~ 215 (876)
..-|||||.+||.++...||..+|..|--.+... .+.+. +.+|||.|.+..+|..|+.+|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3469999999999999999999999886555443 33443 479999999999999999999999875 67888
Q ss_pred EeecCCCCCCC----------------------cc-----------------------------c---------------
Q 002823 216 IHYSIPKDNPS----------------------EK-----------------------------E--------------- 229 (876)
Q Consensus 216 V~~A~pk~~~~----------------------ek-----------------------------~--------------- 229 (876)
|++++...... .. +
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 87774221100 00 0
Q ss_pred ----------------cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-cCCcccEEEEEecCHHHHHHHHHHhCCc
Q 002823 230 ----------------INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSR 292 (876)
Q Consensus 230 ----------------~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-tg~skG~AFVeF~d~E~A~kAL~~LnG~ 292 (876)
....||||.||...+++++|+++|+.|-....+++ ....-..|||+|++.+.|..|+..|.|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 02348999999999999999999999988777776 2334468999999999999999999998
Q ss_pred eeC
Q 002823 293 YIA 295 (876)
Q Consensus 293 ~I~ 295 (876)
.|.
T Consensus 272 ~~s 274 (284)
T KOG1457|consen 272 LLS 274 (284)
T ss_pred eec
Confidence 763
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.43 E-value=7.1e-13 Score=130.80 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...+++|||+|||+++++++|+++|++||+|.+++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35578999999999999999999999999999987 3578899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002823 219 SIPKDN 224 (876)
Q Consensus 219 A~pk~~ 224 (876)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976654
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=9.7e-13 Score=129.81 Aligned_cols=78 Identities=22% Similarity=0.418 Sum_probs=72.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||+|||..+++++|+++|++||.|++|++ ++++++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4568999999999999999999999999999877 45679999999999999999999999999999999999998
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 643
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=2.4e-12 Score=149.29 Aligned_cols=161 Identities=22% Similarity=0.392 Sum_probs=133.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC---
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI--- 220 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~--- 220 (876)
+...+.|+|+|||..+..++|...|..||+|..+... ..--.|+|.|.+..+|++|.+.|....+...++++.|+.
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 4456889999999999999999999999999998653 333459999999999999999999999888888887652
Q ss_pred ----CCCC-------------CC------------ccc--------------cccceeEeecCCCCCcHHHHHHHhhhcC
Q 002823 221 ----PKDN-------------PS------------EKE--------------INQGTLVVFNLDSSVSNDELHHIFGVYG 257 (876)
Q Consensus 221 ----pk~~-------------~~------------ek~--------------~~~~tLfV~NLP~svTeedLreiFs~fG 257 (876)
|+.. .. +.+ ....+|||.||+.+++.++|...|..+|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 1100 00 000 0122499999999999999999999999
Q ss_pred CeEEEEecCC--------cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 258 EIKEIRETPQ--------KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 258 ~I~sVritg~--------skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
.|.++.|..+ +.|||||+|.+.++|.+|++.|+|..|.|+.|.|+++.
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999877222 23999999999999999999999999999999999998
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.36 E-value=1.2e-11 Score=133.82 Aligned_cols=161 Identities=14% Similarity=0.236 Sum_probs=131.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE----------E--eCCCccceEeeecCCHHHHHHHHHHccccccCCc
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTF----------Y--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV----------~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr 212 (876)
.-...|||.|||.++|.+++.++|++||-|..- + ..|+.+|-|.|.|-..++++-|++.|++..++|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345679999999999999999999999977542 2 4588899999999999999999999999999999
Q ss_pred eeeEeecCCC---------CC-------------------------CCccccccceeEeecCCC----CCc-------HH
Q 002823 213 KLDIHYSIPK---------DN-------------------------PSEKEINQGTLVVFNLDS----SVS-------ND 247 (876)
Q Consensus 213 ~L~V~~A~pk---------~~-------------------------~~ek~~~~~tLfV~NLP~----svT-------ee 247 (876)
+|+|+.|.-. .. ...+....++|.+.|+=. ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999776311 00 011112455899999832 222 36
Q ss_pred HHHHHhhhcCCeEEEEe-cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 248 ELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 248 dLreiFs~fG~I~sVri-tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
+|++-+++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.+.||+|..+...
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 77788999999999877 67789999999999999999999999999999999877653
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.32 E-value=1.8e-11 Score=134.39 Aligned_cols=160 Identities=23% Similarity=0.260 Sum_probs=136.8
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCC
Q 002823 147 SRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP 225 (876)
Q Consensus 147 SrTLFVgNLP~-~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~ 225 (876)
+..|.|.||.. .||.+.|..+|.-||+|.+|++-.+.+--|.|+|.|...|+-|++.|+|..+.|++|+|.+++...-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 57889999965 59999999999999999999966666789999999999999999999999999999999888533211
Q ss_pred ------Cc---------------c----------ccccceeEeecCCCCCcHHHHHHHhhhcCCe-EEEEecCCcccEEE
Q 002823 226 ------SE---------------K----------EINQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRETPQKIHQKY 273 (876)
Q Consensus 226 ------~e---------------k----------~~~~~tLfV~NLP~svTeedLreiFs~fG~I-~sVritg~skG~AF 273 (876)
.+ + -+++.+|.+.|+|.++++|+|+..|..-|-. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 00 0 0145589999999999999999999988765 55666777888999
Q ss_pred EEecCHHHHHHHHHHhCCceeCCe-EEEEEeecC
Q 002823 274 IEFYDTRAAEAALRELNSRYIAGK-QIKLEPSHL 306 (876)
Q Consensus 274 VeF~d~E~A~kAL~~LnG~~I~Gr-~IkVs~A~~ 306 (876)
+++.++|+|..|+..++...+++. .++|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999999999999864 999999875
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.31 E-value=9.7e-12 Score=104.94 Aligned_cols=66 Identities=35% Similarity=0.580 Sum_probs=61.8
Q ss_pred eEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 235 LVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 235 LfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
|||+|||.++++++|+++|++||.|..+++ .+..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999877 345789999999999999999999999999999986
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=8.7e-12 Score=105.23 Aligned_cols=66 Identities=20% Similarity=0.455 Sum_probs=61.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 150 LLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 150 LFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
|||+|||+++++++|+++|++||+|..+. ..++.++||||+|.+.++|++|++.++|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999998887 2467899999999999999999999999999999885
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=2.4e-11 Score=124.63 Aligned_cols=118 Identities=22% Similarity=0.378 Sum_probs=101.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC-
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI- 220 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~- 220 (876)
.++|||+|||.++++++|+++|.+||.|..+. .+++.+|||||+|.+.++|..|++.+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999997776 368899999999999999999999999999999999999954
Q ss_pred ---CCCCCCc----------------cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe
Q 002823 221 ---PKDNPSE----------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 264 (876)
Q Consensus 221 ---pk~~~~e----------------k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri 264 (876)
++..... .......+++.+++..++..++...|..+|.+..+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 2222210 0113458999999999999999999999999977666
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.26 E-value=6.4e-11 Score=130.19 Aligned_cols=165 Identities=24% Similarity=0.375 Sum_probs=135.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccce-EeeecCCHHHHHHHHHHccccccC--CceeeEeecC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSI 220 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGf-AFV~F~d~edA~kAl~~Lng~~l~--Gr~L~V~~A~ 220 (876)
..+--.++|.|+-.-|+-+.|..+|++||.|..|.+-.|..+| |.|+|.+.+.|+.|...|+|..|. -+.|+|+|++
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 3445677899999999999999999999999999865566665 999999999999999999998864 3577776652
Q ss_pred CC----------CC-------CCc--------------------------------------c--ccc--cceeEeecCC
Q 002823 221 PK----------DN-------PSE--------------------------------------K--EIN--QGTLVVFNLD 241 (876)
Q Consensus 221 pk----------~~-------~~e--------------------------------------k--~~~--~~tLfV~NLP 241 (876)
-. .. +.. . ... ...|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 11 00 000 0 001 3477888886
Q ss_pred C-CCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 242 S-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 242 ~-svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
. .+|.+.|.-+|+.||.|..|++-.+++..|+|+|.|...|+-|+..|+|..+.||+|+|.+++-..
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 5 589999999999999999999977777899999999999999999999999999999999998643
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.1e-11 Score=123.63 Aligned_cols=77 Identities=31% Similarity=0.447 Sum_probs=73.2
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..+|||+||+..+++.||..+|..||.|..|.+...+.|||||||+++.+|+.|+..|||+.|+|.+|+|+++....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 56899999999999999999999999999999988899999999999999999999999999999999999997643
No 52
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.5e-11 Score=122.67 Aligned_cols=78 Identities=22% Similarity=0.406 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~ 224 (876)
.++|||+||+..+++.||+.+|..||+|.+|++.....|||||+|+++.+|+.|+..|+|+.|.|..|+|+++.-...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 689999999999999999999999999999999899999999999999999999999999999999999999865543
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.21 E-value=3.5e-11 Score=134.49 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=88.4
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|+.||+|++|++ ++++++||||+|.++++|++|++.|++..+.+++|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34679999999999999999999999999999887 4567899999999999999999999999999999999998
Q ss_pred cCchhHHHHhhcCCchhhhhhcCCCCCCCCCCCCCCCCcccceeeeccCchhhhHHHHHHhhccc
Q 002823 305 HLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGMITIVISLPLNVKSLAIIYLFTGA 369 (876)
Q Consensus 305 ~~k~~Rr~l~qQ~~~q~~q~~~g~~~~gsp~~~sp~~~~~~~~~~~fssP~n~~~~~l~~l~~~~ 369 (876)
++..... . . ..-+.-+.|.+++...|..+|...
T Consensus 185 ~p~~~~~------~---------------------~-----~~lfV~nLp~~vtee~L~~~F~~f 217 (346)
T TIGR01659 185 RPGGESI------K---------------------D-----TNLYVTNLPRTITDDQLDTIFGKY 217 (346)
T ss_pred ccccccc------c---------------------c-----ceeEEeCCCCcccHHHHHHHHHhc
Confidence 7643110 0 0 012334678888888888888654
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=7.5e-11 Score=135.27 Aligned_cols=164 Identities=16% Similarity=0.311 Sum_probs=128.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
....++||++||..+++.+++++.+.||+++... .++.++||||.+|.+......|+..|+|+.+.+++|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4457999999999999999999999999998765 45789999999999999999999999999999999999888
Q ss_pred CCCCCCCccc--------------------cccceeEeecCC--CCC-cH-------HHHHHHhhhcCCeEEEEecCC--
Q 002823 220 IPKDNPSEKE--------------------INQGTLVVFNLD--SSV-SN-------DELHHIFGVYGEIKEIRETPQ-- 267 (876)
Q Consensus 220 ~pk~~~~ek~--------------------~~~~tLfV~NLP--~sv-Te-------edLreiFs~fG~I~sVritg~-- 267 (876)
.+........ .+...|.+.|+= .++ .+ |+++..+.+||.|..|.+...
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 6543221110 122233333331 111 11 446667889999999998221
Q ss_pred ------cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 268 ------KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 268 ------skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..|..||+|.+.+++++|.++|+|.++.|+.|...|....+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 34789999999999999999999999999999999986643
No 55
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.19 E-value=1.6e-10 Score=129.93 Aligned_cols=163 Identities=14% Similarity=0.221 Sum_probs=128.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...-|-+++|||++|++||.++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..|-|.|--+.++
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 345788899999999999999999887 44443 668999999999999999999996 5777788888888555433
Q ss_pred CCCC-------ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEE-EEe----cCCcccEEEEEecCHHHHHHHHHHhC
Q 002823 223 DNPS-------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELN 290 (876)
Q Consensus 223 ~~~~-------ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~s-Vri----tg~skG~AFVeF~d~E~A~kAL~~Ln 290 (876)
+... ....+...|-+++||..||++||.++|+..-.|.. |.+ .+++.+-|||+|++.+.|++|+. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 3211 01124558999999999999999999997655544 322 34466889999999999999997 46
Q ss_pred CceeCCeEEEEEeecCchhHH
Q 002823 291 SRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 291 G~~I~Gr~IkVs~A~~k~~Rr 311 (876)
...|+-+-|.|-.+...+.++
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HHhhccceEEeehhHHHHHHh
Confidence 778888999998887766665
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=1.7e-10 Score=106.42 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=77.0
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..+.|||+|||.++|.|++.++|.+||.|..||+ +...+|.|||.|++..+|.+|+..|+|..+.++.+.|-|..+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 4568999999999999999999999999999999 66678999999999999999999999999999999999999887
Q ss_pred hHHHH
Q 002823 309 LRKCL 313 (876)
Q Consensus 309 ~Rr~l 313 (876)
..+.+
T Consensus 97 ~~~~~ 101 (124)
T KOG0114|consen 97 AFKLM 101 (124)
T ss_pred HHHHH
Confidence 76644
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=125.50 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=81.1
Q ss_pred cccccCCceeeEeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHH
Q 002823 205 QNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRA 281 (876)
Q Consensus 205 ng~~l~Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~ 281 (876)
++....|..+.++-+. ..+.....++|+|.|||....+-||+.+|++||+|.+|.| ...+||||||+|++.++
T Consensus 73 ~~~~t~g~~~~~~~st----~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPST----NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCC----cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 3344555555543322 1222234568999999999999999999999999999888 55689999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 282 AEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 282 A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
|++|.++|||..|.||+|+|..+..+-
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchhh
Confidence 999999999999999999999988753
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=7.7e-11 Score=112.30 Aligned_cols=77 Identities=19% Similarity=0.407 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
-..+.||||+||...++|++|.+||+++|+|+.|. .+....|||||+|.+.++|+.|++.+++..+..++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999999999998 4566889999999999999999999999999999999988
Q ss_pred cC
Q 002823 219 SI 220 (876)
Q Consensus 219 A~ 220 (876)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.11 E-value=2.7e-10 Score=121.47 Aligned_cols=74 Identities=22% Similarity=0.393 Sum_probs=68.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.++|||+||++.+++++|+++|+.||+|++|++ .+..++||||+|.+.++|+.|+. |+|..|.|++|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999988 33357999999999999999995 999999999999999764
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.6e-10 Score=105.22 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
+..-.+-|||+|||.++|.++..++|.+||.|+.|+ .+...+|.|||.|++..+|++|++.|.|..+.++.|.|.|..
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 455678999999999999999999999999999999 456689999999999999999999999999999999999987
Q ss_pred CCC
Q 002823 221 PKD 223 (876)
Q Consensus 221 pk~ 223 (876)
+.+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 653
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.10 E-value=3.9e-10 Score=96.32 Aligned_cols=66 Identities=26% Similarity=0.500 Sum_probs=59.1
Q ss_pred eEeecCCCCCcHHHHHHHhhhcCCeEEEEec----CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 235 LVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 235 LfV~NLP~svTeedLreiFs~fG~I~sVrit----g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
|||+|||+++++++|+++|+.||.|..+++. +..+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999998883 33579999999999999999999999999999985
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=7.9e-10 Score=119.98 Aligned_cols=161 Identities=16% Similarity=0.344 Sum_probs=126.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
+.-..|||..+.++.+|+||+..|+-||+|..|. ..+.+|||+||+|.+..+-..|+..||-..++|.-|+|.-+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3357999999999999999999999999999998 45779999999999999999999999999999998888322
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 002823 220 IPKDN--------------------------------------------------------------------------- 224 (876)
Q Consensus 220 ~pk~~--------------------------------------------------------------------------- 224 (876)
....+
T Consensus 288 vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~ 367 (544)
T KOG0124|consen 288 VTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITG 367 (544)
T ss_pred cCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceecc
Confidence 00000
Q ss_pred ------------------------------------CCc-----------------------------------cccccc
Q 002823 225 ------------------------------------PSE-----------------------------------KEINQG 233 (876)
Q Consensus 225 ------------------------------------~~e-----------------------------------k~~~~~ 233 (876)
..+ +...++
T Consensus 368 vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~ 447 (544)
T KOG0124|consen 368 VTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQEST 447 (544)
T ss_pred CCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCc
Confidence 000 000344
Q ss_pred eeEeecC--CCCCc---HHHHHHHhhhcCCeEEEEecCCcc---------cEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 002823 234 TLVVFNL--DSSVS---NDELHHIFGVYGEIKEIRETPQKI---------HQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (876)
Q Consensus 234 tLfV~NL--P~svT---eedLreiFs~fG~I~sVritg~sk---------G~AFVeF~d~E~A~kAL~~LnG~~I~Gr~I 299 (876)
.|+++|+ |.+++ +.+|.+.+++||.|..|-+..... -.-||+|....++.+|+.+|||+.|+|+++
T Consensus 448 VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 448 VIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred EEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 6777887 44554 458999999999999977732221 257999999999999999999999999999
Q ss_pred EEEeec
Q 002823 300 KLEPSH 305 (876)
Q Consensus 300 kVs~A~ 305 (876)
..+...
T Consensus 528 vAE~YD 533 (544)
T KOG0124|consen 528 VAEVYD 533 (544)
T ss_pred ehhhhh
Confidence 876543
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.08 E-value=4e-10 Score=120.19 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~--tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~ 223 (876)
.++|||+|||+.+++++|+++|+.||+|.+|++ .+..+|||||+|.++++|+.|+. |+|..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 579999999999999999999999999999984 33368999999999999999994 99999999999999986443
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.07 E-value=3.2e-10 Score=96.90 Aligned_cols=66 Identities=18% Similarity=0.391 Sum_probs=58.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 150 LLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 150 LFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
|||+|||+++++++|+++|+.||.|..++. .+..+++|||+|.+.++|++|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999998882 245789999999999999999999999999999875
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.07 E-value=7.4e-10 Score=91.82 Aligned_cols=69 Identities=28% Similarity=0.523 Sum_probs=63.1
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCC---cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ---KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~---skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs 302 (876)
+|||+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999887432 46999999999999999999999999999999873
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.7e-10 Score=116.98 Aligned_cols=78 Identities=18% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
....+|-|.||+.+++|++|++||.+||.|..++ .++.+||||||.|.+.++|.+||+.|+|.-+..--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3568999999999999999999999999999988 68999999999999999999999999999999999999999
Q ss_pred CCC
Q 002823 220 IPK 222 (876)
Q Consensus 220 ~pk 222 (876)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=4e-10 Score=121.43 Aligned_cols=80 Identities=19% Similarity=0.337 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
.-.++|+|.|||+...|-||+..|++||+|.+|. ..+-+|||+||+|++.++|++|.++|||..|.||+|.|..+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3357999999999999999999999999998887 4566899999999999999999999999999999999999877
Q ss_pred CCC
Q 002823 222 KDN 224 (876)
Q Consensus 222 k~~ 224 (876)
+-.
T Consensus 174 rV~ 176 (376)
T KOG0125|consen 174 RVH 176 (376)
T ss_pred hhc
Confidence 643
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=4e-10 Score=107.47 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=71.5
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
.+.||||+||...++||+|.++|+++|+|+.|-+ +..+.|||||+|.+.++|+.|++.++|..+..++|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4679999999999999999999999999999766 45567999999999999999999999999999999999976
Q ss_pred Cchh
Q 002823 306 LRGL 309 (876)
Q Consensus 306 ~k~~ 309 (876)
.=.+
T Consensus 115 GF~e 118 (153)
T KOG0121|consen 115 GFVE 118 (153)
T ss_pred cchh
Confidence 5443
No 69
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.03 E-value=3.5e-09 Score=115.51 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=132.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHc--cccccCCceeeE
Q 002823 139 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL--QNKLTRSGKLDI 216 (876)
Q Consensus 139 e~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~L--ng~~l~Gr~L~V 216 (876)
..+....++-.|.|++|-..++|.+|.+.++.||+|..+.. ...+..|.|+|++++.|++++..- +...+.|+.--+
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 34556677889999999999999999999999999988875 456678999999999999998532 223467777777
Q ss_pred eecCCCCCCC---ccccccceeEe--ecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC
Q 002823 217 HYSIPKDNPS---EKEINQGTLVV--FNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 217 ~~A~pk~~~~---ek~~~~~tLfV--~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
.|+..+.-.. +.......|.+ -|--..+|-+-|..++...|+|..|.|-.+..-.|.|||++.+.|++|...|||
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNG 181 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNG 181 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccc
Confidence 7774432211 11123334444 444467999999999999999999888666566899999999999999999999
Q ss_pred ceeC--CeEEEEEeecCch
Q 002823 292 RYIA--GKQIKLEPSHLRG 308 (876)
Q Consensus 292 ~~I~--Gr~IkVs~A~~k~ 308 (876)
..|. -++|+|+|+++..
T Consensus 182 ADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 182 ADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ccccccceeEEEEecCcce
Confidence 9885 4999999999964
No 70
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=3.3e-10 Score=129.19 Aligned_cols=166 Identities=23% Similarity=0.333 Sum_probs=134.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
.+.+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|..+|++|+++|++.++.|+.|+.......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999998884222111
Q ss_pred CC------------------CCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHH
Q 002823 223 DN------------------PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEA 284 (876)
Q Consensus 223 ~~------------------~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~k 284 (876)
.. .....-+...+|.- |++..+..-++.++..+|.++. +.++..+..-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 10 00001123344443 9999888888899999999998 8878777789999999999977
Q ss_pred HHHHhCCceeCCeEEEEEeecCchhHH
Q 002823 285 ALRELNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 285 AL~~LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
+...+ |..+.++...+.++.+.+..+
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~g~~n 254 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPGGVWN 254 (549)
T ss_pred cccCC-ceecCCCCceEEecCCCcccC
Confidence 77754 788888888899998866543
No 71
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.5e-09 Score=89.53 Aligned_cols=56 Identities=29% Similarity=0.525 Sum_probs=51.4
Q ss_pred HHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 249 LHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 249 LreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
|+++|++||+|..|++....+++|||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999996555799999999999999999999999999999999986
No 72
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=7.9e-10 Score=115.35 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=72.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...+|-|.||+.++++++|+++|.+||.|..|.+ ++..||||||.|.++++|.+||+.|||.-+..-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4568999999999999999999999999998766 88899999999999999999999999999999999999999
Q ss_pred Cc
Q 002823 306 LR 307 (876)
Q Consensus 306 ~k 307 (876)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.00 E-value=5e-09 Score=116.11 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=64.4
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
++|+|+|||.++|++.|++-|..||.|.+..|....+..+.|.|.++++|++|+..|+|..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 589999999999999999999999999998773333444599999999999999999999999999999873
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.00 E-value=1.4e-09 Score=90.08 Aligned_cols=69 Identities=20% Similarity=0.428 Sum_probs=62.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC---CCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYRA---SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 149 TLFVgNLP~~vTEeeL~elFsqfG~I~sV~~t---gksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
+|||+|||..+++++|+++|++||+|..++.. +..+++|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988732 4468999999999999999999999999999998873
No 75
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.6e-09 Score=119.12 Aligned_cols=158 Identities=18% Similarity=0.281 Sum_probs=115.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-------CCCccc---eEeeecCCHHHHHHHHHHccccccCCce
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-------ASKHCG---FVTISYYDIRAARNAMKSLQNKLTRSGK 213 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-------tgksrG---fAFV~F~d~edA~kAl~~Lng~~l~Gr~ 213 (876)
..-+++|||++||++++|++|...|..||.+..-.. ....+| |+|+.|+++...+.-+.+..- ...+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 345799999999999999999999999998865441 122566 999999999998887765432 2233
Q ss_pred eeEeecCCCCC-------------------CCccccccceeEeecCCCCCcHHHHHHHhh-hcCCeEEEEecC-----Cc
Q 002823 214 LDIHYSIPKDN-------------------PSEKEINQGTLVVFNLDSSVSNDELHHIFG-VYGEIKEIRETP-----QK 268 (876)
Q Consensus 214 L~V~~A~pk~~-------------------~~ek~~~~~tLfV~NLP~svTeedLreiFs-~fG~I~sVritg-----~s 268 (876)
+.++.+.+... ....-.+.+||||++||.-++.++|..+|+ .||.|..+-|+. -+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 33322222211 111223677999999999999999999999 999999977632 36
Q ss_pred ccEEEEEecCHHHHHHHHHHh----CCceeCCeEEEEEeec
Q 002823 269 IHQKYIEFYDTRAAEAALREL----NSRYIAGKQIKLEPSH 305 (876)
Q Consensus 269 kG~AFVeF~d~E~A~kAL~~L----nG~~I~Gr~IkVs~A~ 305 (876)
+|-|-|.|.+..+-.+||.+- +..+| .|+|+|+...
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~-~KRVEIkPYv 452 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDI-DKRVEIKPYV 452 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEecccc-ceeeeeccee
Confidence 799999999999999998741 22222 3566666654
No 76
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=6.1e-10 Score=115.77 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=66.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.+..-++|||++|+|.+..++|+++|++||+|.+.. .++++|||+||+|+|.++|.+|++.-+ -.|+||+-.|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccc
Confidence 344557999999999999999999999999998876 579999999999999999999997543 56899988887
Q ss_pred ecC
Q 002823 218 YSI 220 (876)
Q Consensus 218 ~A~ 220 (876)
++.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 763
No 77
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.4e-09 Score=116.13 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=77.5
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCC
Q 002823 137 AGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 211 (876)
Q Consensus 137 ~ge~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G 211 (876)
........+|-+||||.-|+.+++|.+|+..|++||+|+.|. ++++++|||||+|+++.+...|.+..+|..|.|
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 334444568889999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred ceeeEeecCCC
Q 002823 212 GKLDIHYSIPK 222 (876)
Q Consensus 212 r~L~V~~A~pk 222 (876)
+.|.|.+....
T Consensus 171 rri~VDvERgR 181 (335)
T KOG0113|consen 171 RRILVDVERGR 181 (335)
T ss_pred cEEEEEecccc
Confidence 99999886543
No 78
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=8e-10 Score=111.04 Aligned_cols=77 Identities=27% Similarity=0.384 Sum_probs=70.6
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
..++|||+|||.++.+.||.++|.+||.|.+|.+ .+....||||+|++..+|+.||..-+|..+.|++|+|+|.+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4678999999999999999999999999999887 3334679999999999999999999999999999999999865
No 79
>smart00360 RRM RNA recognition motif.
Probab=98.95 E-value=2.9e-09 Score=87.76 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=59.9
Q ss_pred eecCCCCCcHHHHHHHhhhcCCeEEEEec-----CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 002823 237 VFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (876)
Q Consensus 237 V~NLP~svTeedLreiFs~fG~I~sVrit-----g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs 302 (876)
|+|||..+++++|+++|++||.|..+++. +..+++|||+|.+.++|.+|++.+++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999998872 3347899999999999999999999999999999874
No 80
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=5.3e-09 Score=87.12 Aligned_cols=70 Identities=30% Similarity=0.546 Sum_probs=64.2
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCC----cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ----KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~----skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999887433 378999999999999999999999999999999875
No 81
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=2.8e-09 Score=113.87 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=80.1
Q ss_pred cCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 219 A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
..|..++.....+-.||||+-|+.++++.+|+..|+.||.|+.|++ +++++|||||+|++..+..+|.+..+|.+
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 3454444444456779999999999999999999999999999876 88999999999999999999999999999
Q ss_pred eCCeEEEEEeecCchhH
Q 002823 294 IAGKQIKLEPSHLRGLR 310 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~~R 310 (876)
|.|+.|.|.+-+....+
T Consensus 168 Idgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 168 IDGRRILVDVERGRTVK 184 (335)
T ss_pred ecCcEEEEEeccccccc
Confidence 99999999998765443
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=98.93 E-value=2.9e-09 Score=119.16 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=71.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-cCCcccEEEEEecCH--HHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDT--RAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-tg~skG~AFVeF~d~--E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
...+|||+||++.+++++|+.+|..||.|..|.+ ....||||||+|.+. .++.+||..|||..+.|+.|+|..+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 3458999999999999999999999999999877 222389999999987 7899999999999999999999999987
Q ss_pred hhHH
Q 002823 308 GLRK 311 (876)
Q Consensus 308 ~~Rr 311 (876)
-.-|
T Consensus 89 YLeR 92 (759)
T PLN03213 89 YLAR 92 (759)
T ss_pred HHHH
Confidence 6444
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.93 E-value=1.3e-09 Score=111.19 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+.+...-.+|.|-||...++.++|+.+|++||.|-+|+ .++.++|||||.|.+..+|+.|+++|+|.+|.|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44555568999999999999999999999999999998 5788999999999999999999999999999999999
Q ss_pred EeecCC
Q 002823 216 IHYSIP 221 (876)
Q Consensus 216 V~~A~p 221 (876)
|+++.-
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 998854
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.1e-10 Score=114.34 Aligned_cols=80 Identities=19% Similarity=0.379 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
..|||||++|..+|+|..|...|-+||+|..|. .+.++||||||+|...|+|..||..|++.+|.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 358999999999999999999999999999998 578999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002823 221 PKDNP 225 (876)
Q Consensus 221 pk~~~ 225 (876)
|..-.
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86543
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=98.90 E-value=3.1e-09 Score=118.96 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCCCccceEeeecCCH--HHHHHHHHHccccccCCceeeEeecC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-RASKHCGFVTISYYDI--RAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-~tgksrGfAFV~F~d~--edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
+....+||||||++.+++++|+.+|..||.|.+|. ...+.||||||+|.+. .++.+||..|+|..+.|+.|+|.-|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34457999999999999999999999999999988 2223499999999987 78999999999999999999998887
Q ss_pred CC
Q 002823 221 PK 222 (876)
Q Consensus 221 pk 222 (876)
|.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 65
No 86
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=7.6e-09 Score=115.37 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=68.7
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEeec
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSH 305 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~-Gr~IkVs~A~ 305 (876)
-..|||+.||.++.|++|.-+|++.|+|-++|+ .+.+||||||.|.+.++|++|++.||+.+|. ||.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 348999999999999999999999999999887 6789999999999999999999999999995 8999988765
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=5.8e-09 Score=109.98 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=66.8
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.+|||+||++.+|+++|+++|+.||+|.+|++ .+..+++|||+|+++++|+.|+ .|+|..|.+++|.|.....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 58999999999999999999999999999988 4455689999999999999999 5999999999999998654
No 88
>smart00360 RRM RNA recognition motif.
Probab=98.89 E-value=4.9e-09 Score=86.42 Aligned_cols=66 Identities=20% Similarity=0.438 Sum_probs=59.9
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 152 LRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 152 VgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
|+|||..+++++|+++|++||.|..+.. +++++++|||+|.+.++|.+|++.+++..+.|++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999988872 35568999999999999999999999999999998873
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.88 E-value=2.2e-09 Score=109.68 Aligned_cols=75 Identities=27% Similarity=0.460 Sum_probs=70.5
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
-.+|.|-||-.-++.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+++|+|..+.|+.|+|++++=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 458999999999999999999999999999887 777899999999999999999999999999999999998864
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.87 E-value=3.7e-08 Score=107.73 Aligned_cols=162 Identities=21% Similarity=0.311 Sum_probs=134.5
Q ss_pred CCCcEEEEcCCCC--CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccC--CceeeEeecC
Q 002823 145 HPSRTLLLRKINS--NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSI 220 (876)
Q Consensus 145 ~pSrTLFVgNLP~--~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~--Gr~L~V~~A~ 220 (876)
.+...|.+.=|.+ .+|.+.|..+....|+|..|.+-.|.--.|+|+|++.+.|++|..+|||..|. -..|+|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 4456666666654 58999999999999999999976777778999999999999999999998864 4689999987
Q ss_pred CCCCCCc---------------------cc--------------------------------------------------
Q 002823 221 PKDNPSE---------------------KE-------------------------------------------------- 229 (876)
Q Consensus 221 pk~~~~e---------------------k~-------------------------------------------------- 229 (876)
|.+-... +.
T Consensus 198 P~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g 277 (494)
T KOG1456|consen 198 PTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRG 277 (494)
T ss_pred cceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCC
Confidence 6521000 00
Q ss_pred -------cccceeEeecCCCC-CcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 002823 230 -------INQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (876)
Q Consensus 230 -------~~~~tLfV~NLP~s-vTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkV 301 (876)
.....+.|.+|+.. ++-+.|..+|..||.|..|++.....+.|.||+.|..+.++|+..||+..+-|.+|.|
T Consensus 278 ~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 278 YASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 01226788999874 6778999999999999999997778899999999999999999999999999999999
Q ss_pred EeecC
Q 002823 302 EPSHL 306 (876)
Q Consensus 302 s~A~~ 306 (876)
.+++.
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 98875
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.86 E-value=9.5e-09 Score=85.58 Aligned_cols=70 Identities=23% Similarity=0.481 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC----CccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYRAS----KHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 149 TLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tg----ksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
+|+|+|||..+++++|+++|+.||.|..+.... +.+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999988322 3589999999999999999999999999999998864
No 92
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.86 E-value=8.8e-09 Score=105.71 Aligned_cols=75 Identities=28% Similarity=0.511 Sum_probs=70.3
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
..+|||+|||.++++++|+++|..||.|..|++ ++..+|+|||+|.+.++|..|+..+++..+.|++|+|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 579999999999999999999999999988766 467889999999999999999999999999999999999775
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.84 E-value=1.2e-08 Score=107.58 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=66.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
..||||+||++.+|+++|+++|+.||+|..|+ ..++.++||||+|.++++|+.|+ .|+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 57999999999999999999999999999998 34567789999999999999999 699999999999996653
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.83 E-value=8e-09 Score=85.18 Aligned_cols=56 Identities=23% Similarity=0.492 Sum_probs=50.6
Q ss_pred HHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 164 LKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 164 L~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
|+++|++||+|..+....+.+++|||+|.+.++|++|++.|+|..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999964444799999999999999999999999999999999985
No 95
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=5.3e-09 Score=100.66 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=71.1
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
-.|||.++-...++++|.+.|..||+|+.|++ ++--||||+|+|++.++|++|+.++||..+.|..|.|.|+-.+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 38999999999999999999999999999887 5667899999999999999999999999999999999998765
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
+
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 5
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-09 Score=110.40 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=75.2
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||++|...+++.-|...|-+||.|+.|.+ +.+.|+||||+|...|+|.+||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3569999999999999999999999999999887 56779999999999999999999999999999999999999
Q ss_pred CchhHH
Q 002823 306 LRGLRK 311 (876)
Q Consensus 306 ~k~~Rr 311 (876)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 977554
No 97
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=7.2e-09 Score=107.94 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=67.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
.-++|||++|++.+..|+|++.|++||+|++..+ ++++||||||+|.|.++|.+|++.- .-.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 4569999999999999999999999999999544 7889999999999999999998743 456899999999887
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
-..
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 644
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.80 E-value=1e-08 Score=117.09 Aligned_cols=81 Identities=25% Similarity=0.310 Sum_probs=76.2
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
..+||+|+|+++++++|.++|+..|.|.++++ +++.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999887 7888999999999999999999999999999999999999988
Q ss_pred hhHHHH
Q 002823 308 GLRKCL 313 (876)
Q Consensus 308 ~~Rr~l 313 (876)
..+.+.
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 766644
No 99
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=4.4e-09 Score=124.96 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=140.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC----CCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA----SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~t----gksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
+...++|||++||+..+++.+|+..|..+|.|.+|.+. +....||||.|.+...+-+|..++.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34558999999999999999999999999999998732 33556999999999999999999999998877888887
Q ss_pred cCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCC--
Q 002823 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-- 296 (876)
Q Consensus 219 A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G-- 296 (876)
..++ ....+.++|++|...+....|.+.|..||.|..|.+ .+..-|++|.|++...|+.|+..|-|..|++
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 7653 234678999999999999999999999999999998 5667799999999999999999999999987
Q ss_pred eEEEEEeecCch
Q 002823 297 KQIKLEPSHLRG 308 (876)
Q Consensus 297 r~IkVs~A~~k~ 308 (876)
++++|.|+.+..
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 889999998765
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.76 E-value=1.2e-08 Score=116.57 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
++|||||||+++++++|.++|+..|.|.+++ .+++.+||||++|.+.++|.+|++.|+|.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999988 68999999999999999999999999999999999999998654
Q ss_pred CC
Q 002823 223 DN 224 (876)
Q Consensus 223 ~~ 224 (876)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 101
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=1.5e-08 Score=106.72 Aligned_cols=107 Identities=17% Similarity=0.273 Sum_probs=85.8
Q ss_pred CceeeEeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHH
Q 002823 211 SGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAAL 286 (876)
Q Consensus 211 Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL 286 (876)
.|.|.|+.+...... ...++|||+-|.+.-.|||++.+|..||.|.+|.+ ++.+|||+||+|.+.-+|..||
T Consensus 2 nrpiqvkpadsesrg----~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG----GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCC----ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 366777665443222 24678999999999999999999999999999877 6778999999999999999999
Q ss_pred HHhCCce-eCC--eEEEEEeecCchhHH--HHhhcCCchhh
Q 002823 287 RELNSRY-IAG--KQIKLEPSHLRGLRK--CLANQLPPELE 322 (876)
Q Consensus 287 ~~LnG~~-I~G--r~IkVs~A~~k~~Rr--~l~qQ~~~q~~ 322 (876)
..|+|.. +-| ..|.|+|+...++|. +| ||+.-++.
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRM-QQma~qlG 117 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRM-QQMAGQLG 117 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHH-HHHHHHhc
Confidence 9999955 444 789999999888776 55 55544443
No 102
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.71 E-value=1.6e-08 Score=101.84 Aligned_cols=74 Identities=27% Similarity=0.354 Sum_probs=69.3
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..||||+||+..++++.|+++|-+.|.|+.+++ +...+|||||+|.++|+|+-|++.||..++.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 459999999999999999999999999999987 44578999999999999999999999999999999999887
No 103
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.70 E-value=2.6e-08 Score=117.00 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~ 224 (876)
++||||+.|+..+++.||..+|+.||+|.+|.. ...++||||++....+|.+|+.+|.+..+.++.|+|.|+..+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 799999999999999999999999999999996 56899999999999999999999999999999999999976643
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.4e-09 Score=107.51 Aligned_cols=75 Identities=17% Similarity=0.340 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
..+.-|||+|||.+.||.+|...|++||+|..|. .||+++||||+.|++.++..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4577999999999999999999999999999886 68999999999999999999999999999999999999654
No 105
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.67 E-value=3.8e-08 Score=102.23 Aligned_cols=76 Identities=34% Similarity=0.559 Sum_probs=71.5
Q ss_pred ceeEeecCCCCCcHHHHHH----HhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 233 GTLVVFNLDSSVSNDELHH----IFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLre----iFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.||||.||...+..++|++ +|++||+|.+|.. +++-+|.|||.|.+.+.|..|++.|+|..+.|++++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999998 9999999999876 777899999999999999999999999999999999999987
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
+.
T Consensus 90 ~s 91 (221)
T KOG4206|consen 90 DS 91 (221)
T ss_pred cc
Confidence 65
No 106
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.66 E-value=2.8e-08 Score=106.02 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=68.9
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
+|||+|||..+++.+|+.+|++||+|.+|.| -|.||||..++...|+.||+.|+|.+|.|..|.|+-++.|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999998 47899999999999999999999999999999999998873
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.64 E-value=4.5e-08 Score=94.38 Aligned_cols=79 Identities=13% Similarity=0.367 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
...-.|||.++-..+++++|.+.|..||+|+.+. .++..||||+|+|.+.++|++|+.++||..|-|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3456899999999999999999999999999987 57889999999999999999999999999999999999998
Q ss_pred CCCC
Q 002823 220 IPKD 223 (876)
Q Consensus 220 ~pk~ 223 (876)
--+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 5443
No 108
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=4.2e-09 Score=105.83 Aligned_cols=74 Identities=22% Similarity=0.375 Sum_probs=69.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
.+.-|||+|||..+|+.||.-+|++||+|+.|.+ |++++||||+.|++..+..-|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4568999999999999999999999999999766 8899999999999999999999999999999999999864
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=6.3e-08 Score=111.60 Aligned_cols=162 Identities=17% Similarity=0.274 Sum_probs=131.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCc
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQY-----------G-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqf-----------G-~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr 212 (876)
...+.++|+++|+.+++++.-.+|..- | .|..+.. ...+.||||+|.+.++|..|+ .+++..+.|+
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~ 250 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAM-ALDGIIFEGR 250 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhh-cccchhhCCC
Confidence 336899999999999999999888743 2 3666665 678899999999999999998 5788888888
Q ss_pred eeeEeecCCCCC-------------------CCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCc
Q 002823 213 KLDIHYSIPKDN-------------------PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQK 268 (876)
Q Consensus 213 ~L~V~~A~pk~~-------------------~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~s 268 (876)
.+.+.--..... ..........+||++||..+++++++++...||.++..++ ++.+
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~s 330 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNS 330 (500)
T ss_pred CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccc
Confidence 777632211100 0001113458999999999999999999999999988554 5678
Q ss_pred ccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 269 IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 269 kG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
++|||.+|.+......|+..|||..+++++|.|..+....
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 9999999999999999999999999999999999998765
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=2.1e-07 Score=102.23 Aligned_cols=165 Identities=11% Similarity=0.160 Sum_probs=120.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC-------CeEEEE-eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYG-------DVRTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG-------~I~sV~-~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
-.|-+++||.++++.++.++|.+-- .|.-|+ ..++..|-|||.|..+++|+.|+.. +...++.|-|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 4567799999999999999997322 233333 4788999999999999999999964 333344333322100
Q ss_pred ----------------------C---C--CCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEE---EEe----c
Q 002823 220 ----------------------I---P--KDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE---IRE----T 265 (876)
Q Consensus 220 ----------------------~---p--k~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~s---Vri----t 265 (876)
. + .............|-+++||+..+.++|.++|..|-.-+. |++ .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 0 0 0000111223568999999999999999999998875333 443 5
Q ss_pred CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhHHHH
Q 002823 266 PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCL 313 (876)
Q Consensus 266 g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr~l 313 (876)
+++.|-|||+|.+.|+|.+|..+.+.+..+.|-|.|-.+...+..+.+
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~vL 368 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEVL 368 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHHH
Confidence 667899999999999999999999998889999999988877755533
No 111
>smart00361 RRM_1 RNA recognition motif.
Probab=98.61 E-value=1.2e-07 Score=82.16 Aligned_cols=57 Identities=30% Similarity=0.564 Sum_probs=50.5
Q ss_pred HHHHHHHhh----hcCCeEEEE-e-----c--CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 002823 246 NDELHHIFG----VYGEIKEIR-E-----T--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (876)
Q Consensus 246 eedLreiFs----~fG~I~sVr-i-----t--g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs 302 (876)
+++|+++|+ .||.|..|. + + +.++|+|||+|.+.++|.+|++.|||..+.|++|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999874 2 2 6679999999999999999999999999999999863
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.59 E-value=1e-07 Score=112.05 Aligned_cols=80 Identities=26% Similarity=0.334 Sum_probs=76.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhH
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 310 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~R 310 (876)
.++||||+.|+..+++.||..+|+.||+|.+|.+ -.+++||||.+..+.+|.+|+.+|+...+.++.|+|.|+..++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 6789999999999999999999999999999998 457899999999999999999999999999999999999999877
Q ss_pred H
Q 002823 311 K 311 (876)
Q Consensus 311 r 311 (876)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 6
No 113
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=2.1e-08 Score=103.42 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=113.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
...+||||.|+-..|+|+-|.++|-+.|+|..|. ..++.| ||||.|.++-...-|++.++|..+.++.++|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3468999999999999999999999999999988 234455 99999999999999999999999999988886632
Q ss_pred CCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
..... -|+..++++.+.+.|+.-|.+..+++ ++.++.++|+.+....+.-.|+...++....-
T Consensus 86 G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CCCcc-------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 21111 15567889999999999999998887 45577899999988888888887766655544
Q ss_pred eEE
Q 002823 297 KQI 299 (876)
Q Consensus 297 r~I 299 (876)
+++
T Consensus 153 ~~~ 155 (267)
T KOG4454|consen 153 KKV 155 (267)
T ss_pred CCc
Confidence 443
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=100.98 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=72.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccc-cccCCceeeEe
Q 002823 139 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN-KLTRSGKLDIH 217 (876)
Q Consensus 139 e~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng-~~l~Gr~L~V~ 217 (876)
..+..+...+||||++|...++|.+|++.|.+||+|+++.. -..++||||+|.+.++|+.|.++.-+ ..|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 55667778899999999999999999999999999999995 34567999999999999999876555 45899999999
Q ss_pred ecCCC
Q 002823 218 YSIPK 222 (876)
Q Consensus 218 ~A~pk 222 (876)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99884
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=2.3e-07 Score=101.28 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=68.8
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEeecC
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~L-nG~~I~Gr~IkVs~A~~ 306 (876)
+....+|||++|-..+++.+|+++|.+||+|+.|++. ..+++|||+|.+.++|+.|..++ +...|.|++|+|.|+++
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4456799999999999999999999999999999984 35669999999999999998765 55778999999999998
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.48 E-value=2.7e-07 Score=79.93 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=50.1
Q ss_pred HHHHHHHhh----ccCCeEEEE---e---C--CCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 161 DSELKALFE----QYGDVRTFY---R---A--SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 161 EeeL~elFs----qfG~I~sV~---~---t--gksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
+++|+++|+ +||.|.++. . + ++++|||||+|.+.++|.+|++.|+|..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999998873 1 2 778999999999999999999999999999999876
No 117
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.38 E-value=8.2e-08 Score=106.32 Aligned_cols=170 Identities=16% Similarity=0.293 Sum_probs=131.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccc-cCCceeeEeecCCCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL-TRSGKLDIHYSIPKDN 224 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqf--G~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~-l~Gr~L~V~~A~pk~~ 224 (876)
.++|++||.+.++..+|+.+|... +--..+ -...||+||.+.+...|.+|++.++|+. +.|+++.|.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999743 111111 1145899999999999999999999975 9999999999988765
Q ss_pred CCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCC--cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 002823 225 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ--KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (876)
Q Consensus 225 ~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~--skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs 302 (876)
. .+++-|+|+|+...++.|..+...||.|..|..+.. ..-..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 4 345899999999999999999999999998765222 22234578899999999999999999999999999
Q ss_pred eecCchhHHHHhhcCCchhhhhhcCCCC
Q 002823 303 PSHLRGLRKCLANQLPPELEQEECGSYQ 330 (876)
Q Consensus 303 ~A~~k~~Rr~l~qQ~~~q~~q~~~g~~~ 330 (876)
|--... .+|+.+.+..|...++..
T Consensus 153 YiPdeq----~~q~~p~q~~q~hh~~g~ 176 (584)
T KOG2193|consen 153 YIPDEQ----NAQHQPGQHQQGHHGSGN 176 (584)
T ss_pred cCchhh----hhccCccccccccccccc
Confidence 875432 223344444444444444
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.30 E-value=6.4e-07 Score=98.02 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=130.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
....++|++++...+.+.+...++..+|.+.... ....++++++|.|...+.+..|+.....+.+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4568999999999999999999999999665554 45678999999999999999999765555666665554443
Q ss_pred CCCCCCCc------cccccceeE-eecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHH
Q 002823 220 IPKDNPSE------KEINQGTLV-VFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALR 287 (876)
Q Consensus 220 ~pk~~~~e------k~~~~~tLf-V~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~ 287 (876)
........ ......++| |++++.++++++|+..|..+|.|..+++ ++..+++|+|+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 33221110 011233555 9999999999999999999999999987 55678999999999999999998
Q ss_pred HhCCceeCCeEEEEEeecCch
Q 002823 288 ELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 288 ~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
. ....+.++++.+.+..+..
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 8 8899999999999988764
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.23 E-value=2.7e-06 Score=87.56 Aligned_cols=80 Identities=20% Similarity=0.359 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQY-GDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqf-G~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
......-+||..+|.-+.+.++..+|.+| |.|+.++ .||.++|||||+|++++.|+-|.+.||+..+.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44455688999999999999999999998 6777776 58999999999999999999999999999999999999
Q ss_pred eecCCC
Q 002823 217 HYSIPK 222 (876)
Q Consensus 217 ~~A~pk 222 (876)
++-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 997654
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.5e-06 Score=94.83 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=72.4
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
++.+.|||..|.+-+++++|.-+|+.||+|++|.+ ++.+-.||||+|++.+++++|.-+|++..|.+++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 46789999999999999999999999999999776 5666789999999999999999999999999999999998
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
..-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 7644
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.7e-07 Score=111.38 Aligned_cols=139 Identities=9% Similarity=0.134 Sum_probs=119.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
..++||+||+..+.+.+|...|..+|.+..+. ..++.||+|||.|..+++|.+|+.-.. ..+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh----------
Confidence 35889999999999999999999999887765 467889999999999999999996433 33333
Q ss_pred CCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 002823 222 KDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (876)
Q Consensus 222 k~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr 297 (876)
...|+|.|.|...|.++|+.++..+|.++++++ .++++|.++|.|.+..+|.+++...+...+.-+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 236899999999999999999999999999765 677899999999999999999999988888877
Q ss_pred EEEEEeecC
Q 002823 298 QIKLEPSHL 306 (876)
Q Consensus 298 ~IkVs~A~~ 306 (876)
.+.|..+.+
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 777777655
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.5e-06 Score=93.18 Aligned_cols=79 Identities=16% Similarity=0.386 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..|...|||-.|.+-+++++|.-+|+.||+|.+|. .++.+..||||+|.+.+++++|.-.|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35668999999999999999999999999999886 5788999999999999999999999999999999999999
Q ss_pred cCCC
Q 002823 219 SIPK 222 (876)
Q Consensus 219 A~pk 222 (876)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8543
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.11 E-value=2.5e-06 Score=90.09 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=118.7
Q ss_pred cEEEEcCCCCCCCHHH-H--HHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 148 RTLLLRKINSNIEDSE-L--KALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 148 rTLFVgNLP~~vTEee-L--~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
...++.++-..+..+- | ...|+.|-.+...+ ..++-++++|+.|.....-.++-..-+++++..+.+++.-..
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 4556777766666554 3 56666666544433 456778999999998888888877777777777766664333
Q ss_pred CCCCCC--ccccccceeEeecCCCCCcHHHHHHHhhhcCCeE---EEEe--cCCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 221 PKDNPS--EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIK---EIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 221 pk~~~~--ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~---sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
.-.++. +-+...-+||.+.|.-+++++-|...|.+|-... .||. +++++||+||.|.+..++.+|+++|+|+.
T Consensus 177 swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 177 SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred ccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 222221 2223455899999999999999999999886432 2333 78999999999999999999999999999
Q ss_pred eCCeEEEEEeecCch
Q 002823 294 IAGKQIKLEPSHLRG 308 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~ 308 (876)
++.++|++.-+.-++
T Consensus 257 VgsrpiklRkS~wke 271 (290)
T KOG0226|consen 257 VGSRPIKLRKSEWKE 271 (290)
T ss_pred cccchhHhhhhhHHh
Confidence 999999987665544
No 124
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.10 E-value=7.5e-06 Score=95.97 Aligned_cols=85 Identities=13% Similarity=0.285 Sum_probs=75.6
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--------eCCCccceEeeecCCHHHHHHHHHHccccc
Q 002823 137 AGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--------RASKHCGFVTISYYDIRAARNAMKSLQNKL 208 (876)
Q Consensus 137 ~ge~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~--------~tgksrGfAFV~F~d~edA~kAl~~Lng~~ 208 (876)
.|....++.-+++|||+||++.++++.|...|..||+|.+++ ...+.+.|+||.|.+..+|++|++.|+|..
T Consensus 164 ~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 164 PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 345555667789999999999999999999999999999998 245578899999999999999999999999
Q ss_pred cCCceeeEeecCC
Q 002823 209 TRSGKLDIHYSIP 221 (876)
Q Consensus 209 l~Gr~L~V~~A~p 221 (876)
+.+..+++.|+++
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999999844
No 125
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=3.1e-06 Score=87.65 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=101.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
..+||||+|+...++++-|.++|-+-|.|..|.| +.+.| ||||+|.++....-|++.+||..+.++.++|.+-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3569999999999999999999999999999988 23344 999999999999999999999999999999998765
Q ss_pred chhH----HHHhhcCCchhhhhhcCC-CCCCCCCCCCCCCCcccceeeeccCchhhhHHH-HHHhhccccccCCcCcccc
Q 002823 307 RGLR----KCLANQLPPELEQEECGS-YQQQNSPPNKPTNESAGMITIVISLPLNVKSLA-IIYLFTGAFAHGSKSSRIT 380 (876)
Q Consensus 307 k~~R----r~l~qQ~~~q~~q~~~g~-~~~gsp~~~sp~~~~~~~~~~~fssP~n~~~~~-l~~l~~~~~~~g~~~s~~~ 380 (876)
.... +.-..+...-..+..... ....+..-+-+........++.+.+|.+.+... |+....+...+|++++..+
T Consensus 87 ~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ggk~Gg~~l 166 (267)
T KOG4454|consen 87 NSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIGGKQGGKQL 166 (267)
T ss_pred CCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccccccCCCcC
Confidence 4211 111011000000000000 000000001122233345567789999998877 7777777777777777666
Q ss_pred cC
Q 002823 381 DT 382 (876)
Q Consensus 381 ~~ 382 (876)
++
T Consensus 167 pq 168 (267)
T KOG4454|consen 167 PQ 168 (267)
T ss_pred Cc
Confidence 54
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.07 E-value=9.6e-06 Score=83.60 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=71.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhc-CCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVY-GEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~f-G~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
...+.+||..+|.-+.+.++...|.+| |.|..+++ ||.++|||||+|++.+.|.-|.+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 346789999999999999999999998 77777777 888999999999999999999999999999999999999
Q ss_pred ecCc
Q 002823 304 SHLR 307 (876)
Q Consensus 304 A~~k 307 (876)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 9887
No 127
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.06 E-value=5e-06 Score=91.80 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=86.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
.+++|||++||.+++++++++.|++||.|..+. .+.+.+||+||.|.+++.+++++. ..-..|.++++.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 578999999999999999999999999887765 567899999999999999999984 56677999999999999
Q ss_pred CCCCCCccccc-cceeEeecCCCCCcHHHHHHHhhhcCCeE
Q 002823 221 PKDNPSEKEIN-QGTLVVFNLDSSVSNDELHHIFGVYGEIK 260 (876)
Q Consensus 221 pk~~~~ek~~~-~~tLfV~NLP~svTeedLreiFs~fG~I~ 260 (876)
|++........ .......|+....+.-.|...|.-|+.+.
T Consensus 175 pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 175 PKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred chhhccccccccccccccccccccccccccchhccccCccc
Confidence 98765432211 11222334544444555666666666553
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.02 E-value=1.1e-05 Score=92.21 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..-+|+|||.+|...+...+|+.+|++||+|...+ .+.-.++|+||++.+.++|.+||..|+.+.|.|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34579999999999999999999999999998776 1233588999999999999999999999999999999976
Q ss_pred cC
Q 002823 219 SI 220 (876)
Q Consensus 219 A~ 220 (876)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 63
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.00 E-value=5.6e-06 Score=84.75 Aligned_cols=92 Identities=21% Similarity=0.370 Sum_probs=60.9
Q ss_pred CCCceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEec--cc--ccccceeEEEEEecCCccchHHHHHHhcCccccCC
Q 002823 702 EDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLP--ID--FKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKF 777 (876)
Q Consensus 702 ~d~rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~Ylp--~D--f~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~ 777 (876)
+..++.|.||++|..+|.+.+++.|+......++|-|.+ .+ --..+-...|||||.+.+++..|.+.|+|+.|..-
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 356889999999999999999998887666675555554 22 22345678899999999999999999999999865
Q ss_pred CC-ccEEEEEeeccccH
Q 002823 778 NS-EKVASLAYARIQGK 793 (876)
Q Consensus 778 ~s-~Kv~~v~yA~iQG~ 793 (876)
.. .-.+.|.||-.|-.
T Consensus 84 kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp TS-EEEEEEEE-SS---
T ss_pred CCCCcceeEEEcchhcc
Confidence 54 46799999998753
No 130
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.94 E-value=1.2e-05 Score=94.29 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=70.9
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--------cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--------TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri--------tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
++..+.|||+||++.++++.|...|+.||.|..|++ ....+.|+||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 456779999999999999999999999999999987 223467999999999999999999999999999999
Q ss_pred EEeecC
Q 002823 301 LEPSHL 306 (876)
Q Consensus 301 Vs~A~~ 306 (876)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999954
No 131
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=8.2e-06 Score=85.58 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=66.8
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
.+||++||..+.+.+|.++|..||.|.++.+ ..+|+||+|.+..+|..|+..||++.|.|.++.|+|++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5899999999999999999999999999988 5689999999999999999999999999988999999863
No 132
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.89 E-value=3.5e-05 Score=80.24 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=68.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEE--EEecCCcc----cEEEEEecCHHHHHHHHHHhCCceeC---CeEEEE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--IRETPQKI----HQKYIEFYDTRAAEAALRELNSRYIA---GKQIKL 301 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~s--Vritg~sk----G~AFVeF~d~E~A~kAL~~LnG~~I~---Gr~IkV 301 (876)
.-+||||.+||.++...||..+|..|-.-+. ++.+.+.+ -+|||.|.+.++|.+|+++|||..|. +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3579999999999999999999999877665 45554443 69999999999999999999999985 799999
Q ss_pred EeecCchhH
Q 002823 302 EPSHLRGLR 310 (876)
Q Consensus 302 s~A~~k~~R 310 (876)
++++....+
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999875533
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.87 E-value=3.3e-05 Score=82.56 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.+..+.+|+|.|||..|++++|+++|..||.++.+- ..+.+.|.|-|.|...++|.+|++.+++..+.|+.|.+..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344457999999999999999999999999887775 5788999999999999999999999999999999998877
Q ss_pred cCC
Q 002823 219 SIP 221 (876)
Q Consensus 219 A~p 221 (876)
..+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 644
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.85 E-value=2.6e-05 Score=89.33 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=68.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.+.|||.+|...+...+|+.+|++||+|+-.++ ++..+.|+||++.+.++|.+||..|+..++.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 348999999999999999999999999998666 455678999999999999999999999999999999998864
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.75 E-value=7.7e-05 Score=79.83 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=69.5
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
..+|+|.|||..++++||+++|..||.++.+-+ .+.+.|.|-|.|...++|.+|++.++|..+.|+++++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 468999999999999999999999998877655 5667799999999999999999999999999999999988775
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 4
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.73 E-value=3.7e-05 Score=88.04 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
..+|||+|||.++++++|++.|++||+|+...+ .++..+||||+|.+.++++.|+.+- -..+++++|.|+--++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 456999999999999999999999999988762 2444599999999999999999764 6678999999976544
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.72 E-value=5.1e-05 Score=86.87 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=64.2
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe---c--CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---T--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri---t--g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
.+|||+|||.+++.++|+++|..||.|+..+| . .+...||||+|.+.++++.||.+- -..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecccc
Confidence 36999999999999999999999999999655 2 223389999999999999999865 78889999999977664
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 138
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.69 E-value=8.1e-05 Score=81.77 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=67.0
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEE--------EEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~s--------Vri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~I 299 (876)
...|||.|||.++|.+++.++|++||.|.. |++ .+.-||-|.|.|-..+++.-|++.|++..+.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 446999999999999999999999999876 444 56678999999999999999999999999999999
Q ss_pred EEEeec
Q 002823 300 KLEPSH 305 (876)
Q Consensus 300 kVs~A~ 305 (876)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999874
No 139
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.69 E-value=0.00037 Score=79.70 Aligned_cols=154 Identities=10% Similarity=0.152 Sum_probs=105.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRT-FY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~s-V~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.....|-+++||+.||++||.++|+-.-.|.. |. ..++..|-|||+|++.+.|++|+.. +...|..|-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 34568999999999999999999996654444 21 4566888999999999999999964 444555554444110
Q ss_pred -----------------------C------------CCCC------------------------C--------Cccc---
Q 002823 220 -----------------------I------------PKDN------------------------P--------SEKE--- 229 (876)
Q Consensus 220 -----------------------~------------pk~~------------------------~--------~ek~--- 229 (876)
. .+.. . ..++
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 0 0000 0 0000
Q ss_pred ------------------ccc-ceeEeecCCCCCcHHHHHHHhhhcCCeE-EEEe--cCCcccEEEEEecCHHHHHHHHH
Q 002823 230 ------------------INQ-GTLVVFNLDSSVSNDELHHIFGVYGEIK-EIRE--TPQKIHQKYIEFYDTRAAEAALR 287 (876)
Q Consensus 230 ------------------~~~-~tLfV~NLP~svTeedLreiFs~fG~I~-sVri--tg~skG~AFVeF~d~E~A~kAL~ 287 (876)
... ..+..++||...++.++..+|+..-.+. .|.+ +++..+-|+|+|.+.++|..|+.
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 011 3567789999999999999999665542 2444 67778999999999999999986
Q ss_pred HhCCceeCCeEEE
Q 002823 288 ELNSRYIAGKQIK 300 (876)
Q Consensus 288 ~LnG~~I~Gr~Ik 300 (876)
-++..+..+-|.
T Consensus 340 -kd~anm~hrYVE 351 (510)
T KOG4211|consen 340 -KDGANMGHRYVE 351 (510)
T ss_pred -cCCcccCcceee
Confidence 344444444443
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.61 E-value=0.00025 Score=66.03 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=59.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccC----CceeeE
Q 002823 148 RTLLLRKINSNIEDSELKALFEQY--GDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR----SGKLDI 216 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqf--G~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~----Gr~L~V 216 (876)
+||.|+|||...|.++|.+++... |...-++ .++.+.|||||.|.+++.|.+..+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 599999999999999999888743 4444444 45678999999999999999999999998875 455677
Q ss_pred eecC
Q 002823 217 HYSI 220 (876)
Q Consensus 217 ~~A~ 220 (876)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.60 E-value=0.00064 Score=75.53 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=110.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQ-----YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsq-----fG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
..-+-.++||+..++.+|..+|+- -|.+......++..|+|.|.|.|.|.-+-|++. +...+.++.|.|--+.+
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATG 138 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCc
Confidence 345667999999999999999973 334444446677889999999999999999864 55667778777743332
Q ss_pred CCC---------CCc---cccccceeEeecCCCCCcHHHHHHHhhhcC----C---eEEEEe-cCCcccEEEEEecCHHH
Q 002823 222 KDN---------PSE---KEINQGTLVVFNLDSSVSNDELHHIFGVYG----E---IKEIRE-TPQKIHQKYIEFYDTRA 281 (876)
Q Consensus 222 k~~---------~~e---k~~~~~tLfV~NLP~svTeedLreiFs~fG----~---I~sVri-tg~skG~AFVeF~d~E~ 281 (876)
.+- ... .+.+.-.|-.++||.++++.|+.++|..-- . |.-|+. +++..|-|||.|..+++
T Consensus 139 e~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~ 218 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEED 218 (508)
T ss_pred hhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHH
Confidence 211 100 112344677899999999999999996321 2 222433 67778999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeec
Q 002823 282 AEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 282 A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
|+.||.+ |...|+-|-|.+-.+.
T Consensus 219 aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 219 AQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHHHH-HHHHHhHHHHHHHHHh
Confidence 9999984 4445555555544433
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.58 E-value=0.0002 Score=64.68 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=49.3
Q ss_pred cEEEEcCCCCCCCHHHHH----HHhhccC-CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 148 RTLLLRKINSNIEDSELK----ALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~----elFsqfG-~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
..|||.|||.+.+...|+ .+++.|| +|..|. .+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 368999999999987655 6666776 777763 478999999999999999999999999999999997443
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.53 E-value=7.7e-05 Score=79.06 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeE-----EEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVR-----TFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~-----sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
....+||.+.|..+++++.|-..|.+|-... .-+.+++++||+||.|.++.++.+|+++|+|+.++.+.|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3357999999999999999999999987432 22368999999999999999999999999999999999887554
Q ss_pred C
Q 002823 220 I 220 (876)
Q Consensus 220 ~ 220 (876)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 144
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.49 E-value=0.0002 Score=84.17 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=119.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFE-QYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFs-qfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
....+.+-+++++.+.++.+++++|. .+-.-..+. ..+...|-++|.|....++++|++. +......|.+.|.-.
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 33445666789999999999999997 333323332 4445589999999999999999853 555566666665221
Q ss_pred CC------------CCC-------------------CCcc----ccccceeEeecCCCCCcHHHHHHHhhhcCCeEE-EE
Q 002823 220 IP------------KDN-------------------PSEK----EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IR 263 (876)
Q Consensus 220 ~p------------k~~-------------------~~ek----~~~~~tLfV~NLP~svTeedLreiFs~fG~I~s-Vr 263 (876)
.. +.. ...+ ......|||..||..+++.++.++|..--.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 00 000 0000 113458999999999999999999998877777 77
Q ss_pred e----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchh
Q 002823 264 E----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 264 i----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~ 309 (876)
+ +.+.++.|||+|..++++.+|...-+...++.+.|+|.-...++.
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 6 344567899999999999999887777778889999987765553
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.49 E-value=0.00012 Score=78.15 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=69.6
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
......+||+|++..++.+++..+|+.||.|..|.+ .+++|+|+||+|.+.+.++.|++ ||+..|.|+.++|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 345668999999999999999999999999975544 55689999999999999999999 999999999999998
Q ss_pred ecCc
Q 002823 304 SHLR 307 (876)
Q Consensus 304 A~~k 307 (876)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8764
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.43 E-value=7.3e-05 Score=83.02 Aligned_cols=157 Identities=16% Similarity=0.135 Sum_probs=113.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe-e
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH-Y 218 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~--------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~-~ 218 (876)
..|-|.||.+.++.++++.||.-.|+|..+.. .......|||.|.|...+..|.. |.++++-++.|.|- |
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 38999999999999999999999999998872 12346789999999999988874 66666666655552 2
Q ss_pred cCCCCC----------------------------CC--cc---------------------ccccceeEeecCCCCCcHH
Q 002823 219 SIPKDN----------------------------PS--EK---------------------EINQGTLVVFNLDSSVSND 247 (876)
Q Consensus 219 A~pk~~----------------------------~~--ek---------------------~~~~~tLfV~NLP~svTee 247 (876)
..+... +. .. .....+++|++|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 211000 00 00 0022579999999999999
Q ss_pred HHHHHhhhcCCeEEEEe-cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 248 ELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 248 dLreiFs~fG~I~sVri-tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
++.+.|..+|+|.+.++ .+...-+|-|+|........|++ ++|..+.-+...+...+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 99999999999998766 34445678899999888888887 667666543333333333
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.40 E-value=0.00063 Score=61.53 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=48.5
Q ss_pred ceeEeecCCCCCcHHH----HHHHhhhcC-CeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 233 GTLVVFNLDSSVSNDE----LHHIFGVYG-EIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 233 ~tLfV~NLP~svTeed----LreiFs~fG-~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
..|+|.|||.+.+... |++++..+| +|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4699999999887765 667777776 465552 57899999999999999999999999999999999843
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.25 E-value=0.00032 Score=74.88 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
..+...+.+||+|+...++.+++...|+.||.|..+. ..+..+||+||+|.+.+.+++|++ |++..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3456678999999999999999999999999996444 455689999999999999999997 9999999999999
Q ss_pred eecCC
Q 002823 217 HYSIP 221 (876)
Q Consensus 217 ~~A~p 221 (876)
.+..-
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 77543
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.16 E-value=0.00072 Score=63.81 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=50.2
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhC-----CceeCCeEEEEEeecCch
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN-----SRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~Ln-----G~~I~Gr~IkVs~A~~k~ 308 (876)
.|.|.+++..++.++|++.|+.||.|..|.+. .....|+|.|.+.++|++|+..+. +..|.+..+.++.-...+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGee 81 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEE 81 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHH
Confidence 57888999999999999999999999999983 355689999999999999998774 346788888888777666
Q ss_pred hHH
Q 002823 309 LRK 311 (876)
Q Consensus 309 ~Rr 311 (876)
+++
T Consensus 82 E~~ 84 (105)
T PF08777_consen 82 EEE 84 (105)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 150
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.83 E-value=0.0014 Score=73.90 Aligned_cols=69 Identities=32% Similarity=0.354 Sum_probs=57.4
Q ss_pred ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCC------------------cccEEEEEecCHHHHHHHHHH
Q 002823 227 EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ------------------KIHQKYIEFYDTRAAEAALRE 288 (876)
Q Consensus 227 ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~------------------skG~AFVeF~d~E~A~kAL~~ 288 (876)
+.....++|++.|||.+-.-+.|.++|+.+|.|+.|+|... .+-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33456889999999999999999999999999999998211 145899999999999999998
Q ss_pred hCCceeC
Q 002823 289 LNSRYIA 295 (876)
Q Consensus 289 LnG~~I~ 295 (876)
|+...-.
T Consensus 306 ~~~e~~w 312 (484)
T KOG1855|consen 306 LNPEQNW 312 (484)
T ss_pred hchhhhh
Confidence 8655443
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.0002 Score=86.17 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=119.6
Q ss_pred CcEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEeCC-----CccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 147 SRTLLLRKINSNIEDS-ELKALFEQYGDVRTFYRAS-----KHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 147 SrTLFVgNLP~~vTEe-eL~elFsqfG~I~sV~~tg-----ksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
.+...+.++-+...+. ..+..|+.+|.|+.|+... ....++++.+....+++.|. ...+.-+.++...|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCC
Confidence 4677888887777766 5678899999999998322 12238899999999999888 467778888988888887
Q ss_pred CCCCCCccc------cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHh
Q 002823 221 PKDNPSEKE------INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALREL 289 (876)
Q Consensus 221 pk~~~~ek~------~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~L 289 (876)
++....... ....++||+||+..+.+.+|...|..+|.+..+++ .++.+|+|+|+|...++|.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 665322111 12348999999999999999999999999887655 5667899999999999999999977
Q ss_pred CCceeCCeEEEEE
Q 002823 290 NSRYIAGKQIKLE 302 (876)
Q Consensus 290 nG~~I~Gr~IkVs 302 (876)
++..++...+-|.
T Consensus 730 d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 730 DSCFFGKISVAIS 742 (881)
T ss_pred hhhhhhhhhhhee
Confidence 7666663333333
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.74 E-value=0.0021 Score=70.59 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=61.8
Q ss_pred cEEEEcCCCCCCCHHHHH------HHhhccCCeEEEEeCCCc------c--ceEeeecCCHHHHHHHHHHccccccCCce
Q 002823 148 RTLLLRKINSNIEDSELK------ALFEQYGDVRTFYRASKH------C--GFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~------elFsqfG~I~sV~~tgks------r--GfAFV~F~d~edA~kAl~~Lng~~l~Gr~ 213 (876)
.-+||-+||+.+-++++. ++|.+||+|..|.+..+. . --.||.|.+.|+|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 468999999998887732 899999999998843331 1 22599999999999999999999999999
Q ss_pred eeEeecCCC
Q 002823 214 LDIHYSIPK 222 (876)
Q Consensus 214 L~V~~A~pk 222 (876)
|+..|...|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999886543
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.72 E-value=0.0042 Score=68.25 Aligned_cols=82 Identities=22% Similarity=0.424 Sum_probs=67.0
Q ss_pred cceeEeecCCCCCcHHHH------HHHhhhcCCeEEEEecCCc------ccE--EEEEecCHHHHHHHHHHhCCceeCCe
Q 002823 232 QGTLVVFNLDSSVSNDEL------HHIFGVYGEIKEIRETPQK------IHQ--KYIEFYDTRAAEAALRELNSRYIAGK 297 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedL------reiFs~fG~I~sVritg~s------kG~--AFVeF~d~E~A~kAL~~LnG~~I~Gr 297 (876)
.+-+||-+|++.+..|++ .++|++||+|+.|.+..+. .+. .||.|.+.|+|.+||.+.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999999887772 4789999999998873322 122 39999999999999999999999999
Q ss_pred EEEEEeecCchhHHHH
Q 002823 298 QIKLEPSHLRGLRKCL 313 (876)
Q Consensus 298 ~IkVs~A~~k~~Rr~l 313 (876)
.|+..|...+---..+
T Consensus 194 ~lkatYGTTKYCtsYL 209 (480)
T COG5175 194 VLKATYGTTKYCTSYL 209 (480)
T ss_pred eEeeecCchHHHHHHH
Confidence 9999999887644444
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.55 E-value=0.0019 Score=71.70 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=69.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEE--------EEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~s--------Vri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~ 298 (876)
..+|||-+||..+++++|.++|.++|.|+. |.+ |..+|+-|.|.|.+...|++|+.-++++.+.+.+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 458999999999999999999999999865 222 6778899999999999999999999999999999
Q ss_pred EEEEeecCch
Q 002823 299 IKLEPSHLRG 308 (876)
Q Consensus 299 IkVs~A~~k~ 308 (876)
|+|.++..+.
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9999887654
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.54 E-value=0.0042 Score=66.34 Aligned_cols=87 Identities=23% Similarity=0.376 Sum_probs=73.9
Q ss_pred HHHHHHHHHccccccCCceeeEeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEE----EEecCCccc
Q 002823 195 RAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE----IRETPQKIH 270 (876)
Q Consensus 195 edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~s----Vritg~skG 270 (876)
.-|+.|..+|.+....++.++|.|+.. ..|||.||...++.+.|.+.|+.||.|.. +...++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 346777788999999999999999852 46999999999999999999999999866 333566678
Q ss_pred EEEEEecCHHHHHHHHHHhCCc
Q 002823 271 QKYIEFYDTRAAEAALRELNSR 292 (876)
Q Consensus 271 ~AFVeF~d~E~A~kAL~~LnG~ 292 (876)
-++|+|...-.|.+|+..+.-.
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cchhhhhcchhHHHHHHHhccC
Confidence 8999999999999999987543
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.50 E-value=0.0058 Score=50.72 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=43.3
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHH
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAAL 286 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL 286 (876)
+.|-|.+.+.+.. +++...|..||+|..+.++ ......+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 4678888887765 4566688999999999984 55779999999999999985
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.29 E-value=0.0038 Score=70.59 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=61.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCC----------C--------ccceEeeecCCHHHHHHHH
Q 002823 140 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRAS----------K--------HCGFVTISYYDIRAARNAM 201 (876)
Q Consensus 140 ~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tg----------k--------srGfAFV~F~d~edA~kAl 201 (876)
.+..+-++|||.+-|||.+-.-+-|.++|..+|.|+.|++-. . .+-||+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 334456899999999999999999999999999999998311 1 2568999999999999999
Q ss_pred HHccccccCCceeeEe
Q 002823 202 KSLQNKLTRSGKLDIH 217 (876)
Q Consensus 202 ~~Lng~~l~Gr~L~V~ 217 (876)
+.++...-...-|+|.
T Consensus 304 e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 304 ELLNPEQNWRMGLKVK 319 (484)
T ss_pred Hhhchhhhhhhcchhh
Confidence 8876554444444443
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.26 E-value=0.0098 Score=56.19 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcccc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK 207 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~ 207 (876)
..|.|.+++..++.++|++.|++||+|..|.. .+...-|||.|.+.+.|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999999885 234558999999999999999877654
No 159
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.08 E-value=0.003 Score=70.81 Aligned_cols=73 Identities=19% Similarity=0.440 Sum_probs=60.7
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEec-cccccc-ceeEEEEEecCCccchHHHHHHhcCccccC
Q 002823 703 DNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLP-IDFKNK-CNVGYAFINMTDPSQIVPFYQSFNGKKWEK 776 (876)
Q Consensus 703 d~rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~Ylp-~Df~~~-~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~ 776 (876)
+....|.||++|+++|.+.|++.||- +...+.|-|+- -|+... |-++.|||||..+.++..|...|+|+.+-.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 34567999999999999999999999 88888887654 555433 336669999999999999999999998754
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.02 E-value=0.013 Score=48.74 Aligned_cols=52 Identities=12% Similarity=0.358 Sum_probs=43.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHH
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAM 201 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl 201 (876)
+.|-|.+.+++..+. +.+.|..||+|..+..+ ....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 578899998776654 55588899999999874 55779999999999999985
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.00 E-value=0.0055 Score=68.17 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-------------eCCCccceEeeecCCHHHHHHHHHHccccccC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-------------RASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-------------~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~ 210 (876)
..-.-+|||-+||..+++.+|.++|.++|.|..-+ .|.+.|+-|.|.|.|...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34457999999999999999999999999886533 56789999999999999999999999999999
Q ss_pred CceeeEeecCCCC
Q 002823 211 SGKLDIHYSIPKD 223 (876)
Q Consensus 211 Gr~L~V~~A~pk~ 223 (876)
+.+|+|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998775443
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.96 E-value=0.02 Score=53.74 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=53.9
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEE------------ecCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-E
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR------------ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-Q 298 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVr------------itg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr-~ 298 (876)
...|.|.+.|+. ....|.+.|++||+|.+.. -.+.......|+|.++.+|.+||+ .||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456899999988 5567889999999998875 124456799999999999999998 799999885 4
Q ss_pred EEEEeecC
Q 002823 299 IKLEPSHL 306 (876)
Q Consensus 299 IkVs~A~~ 306 (876)
+-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 44777643
No 163
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.87 E-value=0.018 Score=68.41 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=62.7
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEE-EEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~s-Vri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
+.|-+.|+|.+++-+||.++|..|-.+.. |++ .+...|-|.|-|++.++|.+|...|+++.|..++|+|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 47889999999999999999999987643 333 566789999999999999999999999999999999864
No 164
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.73 E-value=0.0089 Score=65.89 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=69.7
Q ss_pred CCCcEEE-EcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 145 HPSRTLL-LRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 145 ~pSrTLF-VgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.++.++| |++|+.++++++|+..|..+|.|..++ .++..+|||||.|.....+..++.. +...+.++++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455666 999999999999999999999999998 4678999999999999999999987 88889999999999
Q ss_pred cCCCCC
Q 002823 219 SIPKDN 224 (876)
Q Consensus 219 A~pk~~ 224 (876)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 876643
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.61 E-value=0.0073 Score=64.58 Aligned_cols=68 Identities=25% Similarity=0.446 Sum_probs=58.8
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCc-------------c----cEEEEEecCHHHHHHHHHHhCCce
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQK-------------I----HQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~s-------------k----G~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
..+.||+++||+.+....|+++|+.||+|-.|.+.+.. + .-|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 46799999999999999999999999999998873221 1 138999999999999999999999
Q ss_pred eCCeE
Q 002823 294 IAGKQ 298 (876)
Q Consensus 294 I~Gr~ 298 (876)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99854
No 166
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.41 E-value=0.021 Score=64.62 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=69.0
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhc--CCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCc-eeCCeEEEEEeecCchh
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR-YIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~f--G~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~-~I~Gr~IkVs~A~~k~~ 309 (876)
..+|++||.+.++..+|..+|... +.-..+.+ ..+|+||.+.+...|.+|++.++|+ ++.|+++.|.++.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~---k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV---KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee---ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999754 11112222 4689999999999999999999995 68999999999999887
Q ss_pred HH---HHhhcCCchhhhh
Q 002823 310 RK---CLANQLPPELEQE 324 (876)
Q Consensus 310 Rr---~l~qQ~~~q~~q~ 324 (876)
|. ++ +.+.+++.++
T Consensus 79 rsrk~Qi-rnippql~we 95 (584)
T KOG2193|consen 79 RSRKIQI-RNIPPQLQWE 95 (584)
T ss_pred HhhhhhH-hcCCHHHHHH
Confidence 65 33 4455555554
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.25 E-value=0.066 Score=53.43 Aligned_cols=77 Identities=29% Similarity=0.361 Sum_probs=53.9
Q ss_pred cccceeEeecCC-----CCCcH----HHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 230 INQGTLVVFNLD-----SSVSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 230 ~~~~tLfV~NLP-----~svTe----edLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
++..||.|.=+. ...-. .+|.+.|..||+|.=||+.. +.-+|.|.+-+.|.+|+. ++|.+++|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 345677776555 11222 36888899999999999853 578999999999999997 999999999999
Q ss_pred EEeecCchhH
Q 002823 301 LEPSHLRGLR 310 (876)
Q Consensus 301 Vs~A~~k~~R 310 (876)
|....+.-.+
T Consensus 101 i~LKtpdW~~ 110 (146)
T PF08952_consen 101 IRLKTPDWLK 110 (146)
T ss_dssp EEE-------
T ss_pred EEeCCccHHH
Confidence 9998886643
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.15 E-value=0.01 Score=63.58 Aligned_cols=65 Identities=31% Similarity=0.546 Sum_probs=54.1
Q ss_pred HHHHHHhh-hcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhHH
Q 002823 247 DELHHIFG-VYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 247 edLreiFs-~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
++|...|+ +||+|+++.+ -.+-+|-++|+|...++|++|+..||+..+.|++|..++.--..-+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 45555566 9999999765 23346889999999999999999999999999999999987766555
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.14 E-value=0.017 Score=61.79 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC-------------CCccc----eEeeecCCHHHHHHHHHHccccc
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA-------------SKHCG----FVTISYYDIRAARNAMKSLQNKL 208 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~t-------------gksrG----fAFV~F~d~edA~kAl~~Lng~~ 208 (876)
..-.||+++||+.++-.-|+++|.+||.|-.|+.. +..++ -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56689999999999999999999999999999821 11221 28999999999999999999999
Q ss_pred cCCce
Q 002823 209 TRSGK 213 (876)
Q Consensus 209 l~Gr~ 213 (876)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 170
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.97 E-value=0.085 Score=64.66 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCC--ceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G--r~L~V~~A~ 220 (876)
...+++.+||++|+..+....|...|..||.|+.|.. .+..-||+|.|++...|+.|++.|.|..|.+ +.++|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4567899999999999999999999999999999875 4566799999999999999999999999875 678998886
Q ss_pred CC
Q 002823 221 PK 222 (876)
Q Consensus 221 pk 222 (876)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 54
No 171
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.96 E-value=0.13 Score=49.22 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=66.5
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEecccccccceeEEEEEecCCccchHHHHHHhcCccccCCCCccEE
Q 002823 704 NRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVA 783 (876)
Q Consensus 704 ~rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~Ylp~Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~ 783 (876)
.+|+|-+=-+|+.++..+++..+-+.+.....-+.+.-|.. -|.-=+-|-|.++++|..||+.|||+++...-. .+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 35666666889999888777677777777777666666643 466679999999999999999999999987765 459
Q ss_pred EEEe-eccc
Q 002823 784 SLAY-ARIQ 791 (876)
Q Consensus 784 ~v~y-A~iQ 791 (876)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4554
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.95 E-value=0.053 Score=59.06 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=52.4
Q ss_pred HHHHHHHhhhcCCeEEEEe--cC-C---cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 246 NDELHHIFGVYGEIKEIRE--TP-Q---KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 246 eedLreiFs~fG~I~sVri--tg-~---skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
++++++.+++||+|..|-+ .+ . ..--.||+|...++|.+|+-.|||+.|+|+.++..|..-.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 5688999999999988665 11 1 12358999999999999999999999999999999887654
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.83 E-value=0.035 Score=65.22 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=68.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhh-hcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCcee---CCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFG-VYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI---AGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs-~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I---~Gr~IkVs~A~ 305 (876)
...+.|+|.||-..+|.-+|+.++. ..|.|.+..| .+-|.+|||.|.+.++|.+.+.+|||..+ +.+.|.+.|..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 4567999999999999999999999 5555666644 44577999999999999999999999876 56999999998
Q ss_pred CchhHH
Q 002823 306 LRGLRK 311 (876)
Q Consensus 306 ~k~~Rr 311 (876)
..+..+
T Consensus 521 ~deld~ 526 (718)
T KOG2416|consen 521 ADELDK 526 (718)
T ss_pred hhHHHH
Confidence 877554
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.62 E-value=0.071 Score=50.11 Aligned_cols=73 Identities=8% Similarity=0.190 Sum_probs=53.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE------------eCCCccceEeeecCCHHHHHHHHHHccccccCCc-
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY------------RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG- 212 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~------------~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr- 212 (876)
..+.|.|-+.|+. ....|.+.|++||.|.+.. .......+..|+|.++.+|++||. .||+.+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567899999988 6677888999999998886 223456789999999999999995 699999875
Q ss_pred eeeEeecC
Q 002823 213 KLDIHYSI 220 (876)
Q Consensus 213 ~L~V~~A~ 220 (876)
.+-|.+..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 44577653
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.058 Score=63.11 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=56.7
Q ss_pred ccceeEeecCCCC--Cc----HHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeC-CeEE
Q 002823 231 NQGTLVVFNLDSS--VS----NDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQI 299 (876)
Q Consensus 231 ~~~tLfV~NLP~s--vT----eedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~-Gr~I 299 (876)
....|+|.|+|.- .. ..-|.++|+++|+|..+.+ .+..+||.|++|.+..+|+.|++.|||+.+. ..+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3457889999852 22 2346788999999998766 4557899999999999999999999999886 4555
Q ss_pred EEEe
Q 002823 300 KLEP 303 (876)
Q Consensus 300 kVs~ 303 (876)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 5543
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.30 E-value=0.13 Score=58.93 Aligned_cols=81 Identities=30% Similarity=0.381 Sum_probs=70.9
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEecccccccceeEEEEEecCCccchHHHHHHhcCccccCCCCccEEE
Q 002823 705 RTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVAS 784 (876)
Q Consensus 705 rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~Ylp~Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~Kv~~ 784 (876)
-|+|-|=-+|+.+|..+|+..+...+.-=-|+-.++ | .--|.--+-|-|.+..++..||+.|||+++...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 788999999999999999999998888777888888 3 445666689999999999999999999999887777 999
Q ss_pred EEeec
Q 002823 785 LAYAR 789 (876)
Q Consensus 785 v~yA~ 789 (876)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.97 E-value=0.12 Score=60.67 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=56.1
Q ss_pred CCcEEEEcCCCCCCC--H----HHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccC-Ccee
Q 002823 146 PSRTLLLRKINSNIE--D----SELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKL 214 (876)
Q Consensus 146 pSrTLFVgNLP~~vT--E----eeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~-Gr~L 214 (876)
-...|+|-|+|---. . .-|.++|+++|+|..++ ..+..+||.|++|.+.++|+.|++.|+|+.|. ...+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 346889999985322 2 23458999999999988 45779999999999999999999999999875 3444
Q ss_pred eE
Q 002823 215 DI 216 (876)
Q Consensus 215 ~V 216 (876)
.|
T Consensus 137 ~v 138 (698)
T KOG2314|consen 137 FV 138 (698)
T ss_pred Ee
Confidence 44
No 178
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.87 E-value=0.049 Score=60.36 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYG--DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG--~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
...+||+||-|.+|+++|.+.+...| .+.+++ ..+.+||||+|..-+....++.++.|-.+.|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35899999999999999999888666 344443 67889999999999999999999999989998876544
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.52 E-value=0.04 Score=59.13 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=47.0
Q ss_pred HHHHHhh-ccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 163 ELKALFE-QYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 163 eL~elFs-qfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
+|...|+ +||+|+.+.+ .-.-+|-+||.|...++|++|+..||+..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3334444 9999999862 2235788999999999999999999999999999999885
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.06 E-value=0.077 Score=62.46 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=66.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcccccc---CCceeeE
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFE-QYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT---RSGKLDI 216 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFs-qfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l---~Gr~L~V 216 (876)
|....++..|+|.||-.-+|.-+|++++. ..|.|...++ .+-|.-|||.|.+.++|.....+|+|..+ +.+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 44567789999999999999999999999 6667777765 44566799999999999999999999875 4678888
Q ss_pred eecC
Q 002823 217 HYSI 220 (876)
Q Consensus 217 ~~A~ 220 (876)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 7763
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.69 E-value=0.12 Score=58.19 Aligned_cols=73 Identities=25% Similarity=0.483 Sum_probs=60.5
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCC--------cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ--------KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~--------skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
+.|.|.||.++++.++++.+|.-.|+|.++++.+. ....|||.|.|...+..|.. |....+-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999988442 23589999999999998855 7777777777776655
Q ss_pred cC
Q 002823 305 HL 306 (876)
Q Consensus 305 ~~ 306 (876)
-.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.40 E-value=0.5 Score=47.09 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCH-HHH---HHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 141 LNDEHPSRTLLLRKINSNIED-SEL---KALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTE-eeL---~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
...+.|-.||.|+-|..++.. +|| ...++.||+|.+|...| +-.|.|.|.|..+|-+|+.+++. ...|..+++
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 345677889999988777653 344 45677999999998654 45799999999999999999886 677888888
Q ss_pred eecC
Q 002823 217 HYSI 220 (876)
Q Consensus 217 ~~A~ 220 (876)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7753
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.15 E-value=0.53 Score=46.95 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=58.2
Q ss_pred ccccceeEeecCCCCCc----HHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 229 EINQGTLVVFNLDSSVS----NDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svT----eedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
+++-.||+|+=|..++. ...+.+.++.||.|.+|...+ +.-|.|.|.|..+|.+|+.++.. ...|..+++.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 34567899977766543 234555678999999998754 66899999999999999999876 677888888886
Q ss_pred cC
Q 002823 305 HL 306 (876)
Q Consensus 305 ~~ 306 (876)
.+
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 54
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.09 E-value=0.34 Score=48.51 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=52.4
Q ss_pred CCCCcEEEEcCCC-----C-CCCH---HHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCcee
Q 002823 144 EHPSRTLLLRKIN-----S-NIED---SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (876)
Q Consensus 144 e~pSrTLFVgNLP-----~-~vTE---eeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L 214 (876)
..|..||.|.=+. . ..++ .+|.+.|..||+|.-++.. .+.-+|+|.+-+.|.+|+ .++|..+.|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaal-s~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAAL-SLDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHH-HGCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHH-ccCCcEECCEEE
Confidence 3556788887665 1 2332 3667888999998877742 257899999999999999 589999999999
Q ss_pred eEeecCCC
Q 002823 215 DIHYSIPK 222 (876)
Q Consensus 215 ~V~~A~pk 222 (876)
+|+...|.
T Consensus 100 ~i~LKtpd 107 (146)
T PF08952_consen 100 KIRLKTPD 107 (146)
T ss_dssp EEEE----
T ss_pred EEEeCCcc
Confidence 99886543
No 185
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.81 E-value=0.31 Score=56.88 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=54.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHH
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFE-QYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKS 203 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFs-qfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~ 203 (876)
...-+|.+|||||+||.-++.++|..+|+ -||.|.-+-+ -+-.+|-|=|.|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34557789999999999999999999999 8999987752 244789999999999999999964
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.51 E-value=0.43 Score=56.10 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=61.7
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh--ccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccc--cccCCc
Q 002823 137 AGEHLNDEHPSRTLLLRKINSNIEDSELKALFE--QYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSG 212 (876)
Q Consensus 137 ~ge~p~~e~pSrTLFVgNLP~~vTEeeL~elFs--qfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng--~~l~Gr 212 (876)
+|++....+.-+.|.++-||..+..++++.||+ .|-++.+|..... .--||+|++..||+.|.+.|.. +.|.|+
T Consensus 165 kgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 165 KGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred CccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 556665666667888999999999999999998 5788888874222 2468999999999999998876 347787
Q ss_pred eeeE
Q 002823 213 KLDI 216 (876)
Q Consensus 213 ~L~V 216 (876)
+|..
T Consensus 243 pImA 246 (684)
T KOG2591|consen 243 PIMA 246 (684)
T ss_pred chhh
Confidence 7654
No 187
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.27 E-value=0.27 Score=56.87 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=53.2
Q ss_pred cHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 245 SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 245 TeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
+-.+|...|.+||+|..|.+. .+.-.|.|+|.+..+|-+|.. ..+..|.++.|+|.|-.+..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~-~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVD-YSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCcccccccc-Cchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 457899999999999999883 335689999999999977754 78999999999999998854
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.23 E-value=0.62 Score=54.82 Aligned_cols=98 Identities=12% Similarity=0.169 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHccccccCCceeeEeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhh--hcCCeEEEEecCCccc
Q 002823 193 DIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFG--VYGEIKEIRETPQKIH 270 (876)
Q Consensus 193 d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs--~fG~I~sVritg~skG 270 (876)
|++-..+++++.-+..++.+-.+|.-. ...+.|.++-||..+-.|+++.+|+ .+-++++|.+. ...
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa-~N~- 213 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA-HND- 213 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee-ecC-
Confidence 344455666666666666665555332 2345788999999999999999998 47788888872 222
Q ss_pred EEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 002823 271 QKYIEFYDTRAAEAALRELNS--RYIAGKQIKLE 302 (876)
Q Consensus 271 ~AFVeF~d~E~A~kAL~~LnG--~~I~Gr~IkVs 302 (876)
-=||+|++..||+.|.+.|.. ++|.||+|...
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 358999999999999998854 56777776543
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.71 E-value=0.21 Score=55.59 Aligned_cols=75 Identities=15% Similarity=0.261 Sum_probs=60.1
Q ss_pred cEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeCCCc--------cceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 148 RTLLLRKINSNIEDSELK---ALFEQYGDVRTFYRASKH--------CGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~---elFsqfG~I~sV~~tgks--------rGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
.-+||-+|+..+.++++. +.|.+||.|..|.+.+.. -.-++|+|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888998887665554 689999999999843321 223899999999999999999999999999888
Q ss_pred eecCCC
Q 002823 217 HYSIPK 222 (876)
Q Consensus 217 ~~A~pk 222 (876)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 887654
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.62 E-value=0.48 Score=52.88 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=59.1
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCC--eEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGE--IKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~--I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
-.+||+||-+.+|++||.+.....|. +.++++ .+.+||||+|...+..+.++.++.|-.++|.|+.-.|...
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 36899999999999999998886663 344443 7889999999999999999999999999999965555443
No 191
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.49 E-value=0.74 Score=50.52 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=55.3
Q ss_pred CcEEEEcCC--CCCCC---HHHHHHHhhccCCeEEEEe---CC---CccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 147 SRTLLLRKI--NSNIE---DSELKALFEQYGDVRTFYR---AS---KHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 147 SrTLFVgNL--P~~vT---EeeL~elFsqfG~I~sV~~---tg---ksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
++.|.++|+ +-.++ ++++++..++||.|..|.+ .+ ...--.||+|...++|.+|+-.|+|..++||.++
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344556655 33444 3567789999999988762 11 1233589999999999999999999999999998
Q ss_pred EeecC
Q 002823 216 IHYSI 220 (876)
Q Consensus 216 V~~A~ 220 (876)
..|..
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 87753
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.38 E-value=1.8 Score=39.59 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 205 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Ln 205 (876)
...+|. .|..+...||.++|+.||.|.--.+ .-..|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhc
Confidence 456666 9999999999999999999987775 33479999999999999998775
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.91 E-value=1.6 Score=45.03 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=50.4
Q ss_pred cceeEeecCCCCCcHHHHHHHhhh-cCCe---EEEE--e-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC----
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGV-YGEI---KEIR--E-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG---- 296 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~-fG~I---~sVr--i-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G---- 296 (876)
..+|+|++||+.+|++++++.+.. ++.. ..+. . ....-.-|||.|.+.+++..-...++|..+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 448999999999999999997776 6665 3443 1 11112469999999999999999999988743
Q ss_pred -eEEEEEeec
Q 002823 297 -KQIKLEPSH 305 (876)
Q Consensus 297 -r~IkVs~A~ 305 (876)
.+..|++|-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 455566653
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.04 E-value=3.9 Score=37.54 Aligned_cols=54 Identities=9% Similarity=0.234 Sum_probs=41.6
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
..+|. .|..+...||.++|+.||.|.---+ ...-|||...+.+.|..|+..+.-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 34455 9999999999999999999876555 245799999999999999998863
No 195
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.99 E-value=1.5 Score=49.98 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC----CeEEEEeCCCccceEeeecCCHHHHHHHHH
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYG----DVRTFYRASKHCGFVTISYYDIRAARNAMK 202 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG----~I~sV~~tgksrGfAFV~F~d~edA~kAl~ 202 (876)
.-.+.|=|.++|.....+||...|+.|+ +|..|. ...||-.|.+...|..|+.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-----dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-----DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-----cceeEEeecchHHHHHHhh
Confidence 3457889999999999999999999997 444443 3468999999999999984
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.91 E-value=0.47 Score=52.98 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=64.1
Q ss_pred cceeEeecCCCCCcHHHHH---HHhhhcCCeEEEEecCCc--------ccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 232 QGTLVVFNLDSSVSNDELH---HIFGVYGEIKEIRETPQK--------IHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLr---eiFs~fG~I~sVritg~s--------kG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
..-+||-+|+..+..+.+. +.|.+||.|..|.+.... ..-++|.|...++|..||...+|....|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3467888888877666554 468899999998873322 12489999999999999999999999999999
Q ss_pred EEeecCchhHH
Q 002823 301 LEPSHLRGLRK 311 (876)
Q Consensus 301 Vs~A~~k~~Rr 311 (876)
..+...+..-.
T Consensus 157 a~~gttkycs~ 167 (327)
T KOG2068|consen 157 ASLGTTKYCSF 167 (327)
T ss_pred HhhCCCcchhH
Confidence 99998877544
No 197
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=83.09 E-value=4.3 Score=35.15 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEeCCCccceEeeecCCHHHHHHHHHHc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQY----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSL 204 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqf----G~I~sV~~tgksrGfAFV~F~d~edA~kAl~~L 204 (876)
.+|+|+++. +++.++|+.+|..| ++.+-=.+.. ..|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD---tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD---TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC---CcEEEEECCHHHHHHHHHcC
Confidence 489999996 58889999999999 5332222211 24779999999999999764
No 198
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.87 E-value=5.2 Score=34.69 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=40.7
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhc----CCeEEEEecCCcccEEEEEecCHHHHHHHHHHh
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVY----GEIKEIRETPQKIHQKYIEFYDTRAAEAALREL 289 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~f----G~I~sVritg~skG~AFVeF~d~E~A~kAL~~L 289 (876)
..|+|++++ +++.++|+.+|..| +. ..|.... ..-|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWId--DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWID--DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEec--CCcEEEEECCHHHHHHHHHcC
Confidence 479999995 68999999999999 43 2333322 235789999999999999865
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.86 E-value=2.1 Score=44.64 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=45.8
Q ss_pred CHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcc--ccccCCceeeEeecCCC
Q 002823 160 EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 160 TEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Ln--g~~l~Gr~L~V~~A~pk 222 (876)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 35789999999998888774 3455668999999999999999999 88999999999998543
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.50 E-value=2.6 Score=43.93 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=45.5
Q ss_pred cHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEeecCch
Q 002823 245 SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 245 TeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~Ln--G~~I~Gr~IkVs~A~~k~ 308 (876)
..+.|+++|..|+.+..+..-+. =+-..|.|.+.++|.+|...|+ +..+.|..++|-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999888665332 3358899999999999999999 999999999999996543
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.91 E-value=1.1 Score=55.19 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=61.4
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCcee--CCeEEEEEeecCch
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI--AGKQIKLEPSHLRG 308 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I--~Gr~IkVs~A~~k~ 308 (876)
+.++.|.+-..+-.-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+.+|+|+++ -|-+.+|.+++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3445556667778889999999999999875 33456899999999999999999999886 58889999998754
No 202
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=80.61 E-value=1.7 Score=47.14 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=51.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQN 206 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng 206 (876)
..|||.||...+..+.|...|++||+|.... ..++..+-++|.|...-.|.+|++.+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 6899999999999999999999999886543 5677888899999999999999987743
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.54 E-value=10 Score=42.25 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=57.9
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE-EEEEeecCch
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ-IKLEPSHLRG 308 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~-IkVs~A~~k~ 308 (876)
..-|-|.+.|+.-. .-|..+|++||+|.+... +....+-+|.|.++-+|.+||. -||+.|+|.. |-|..+..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 44677888877643 467789999999988765 4666799999999999999998 6899998854 4477666554
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=77.84 E-value=2.8 Score=38.70 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=45.5
Q ss_pred EeeecCCHHHHHHHHHHccc-cccCCceeeEeecCCCCCCC-----ccccccceeEeecCCCCCcHHHHHHHh
Q 002823 187 VTISYYDIRAARNAMKSLQN-KLTRSGKLDIHYSIPKDNPS-----EKEINQGTLVVFNLDSSVSNDELHHIF 253 (876)
Q Consensus 187 AFV~F~d~edA~kAl~~Lng-~~l~Gr~L~V~~A~pk~~~~-----ek~~~~~tLfV~NLP~svTeedLreiF 253 (876)
|.|+|.+..-|++.++.-.- ..+.+..+.|....-..... ......++|.|.|||..+.+++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999864222 23566666664432221111 112356799999999999999998764
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.74 E-value=41 Score=37.56 Aligned_cols=148 Identities=17% Similarity=0.243 Sum_probs=94.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeC------------CCccceEeeecCCHHHHHHHHH----Hccc
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA------------SKHCGFVTISYYDIRAARNAMK----SLQN 206 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~t------------gksrGfAFV~F~d~edA~kAl~----~Lng 206 (876)
++-.+|.|...|+..+++-..+...|-+||+|++|+.- .+......+.|-+.+.|..... .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999921 1235789999999988876542 2332
Q ss_pred --cccCCceeeEeecCCCCCC----C--cc----------------ccccceeEeecCCCCCcHHH-HHHHh---hhcCC
Q 002823 207 --KLTRSGKLDIHYSIPKDNP----S--EK----------------EINQGTLVVFNLDSSVSNDE-LHHIF---GVYGE 258 (876)
Q Consensus 207 --~~l~Gr~L~V~~A~pk~~~----~--ek----------------~~~~~tLfV~NLP~svTeed-LreiF---s~fG~ 258 (876)
+.+....|.+.|..-+... . +. ...++.|.|.=- ..+..++ +.+.+ ..=+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 2367778887776421100 0 00 013345555433 3333333 33322 22232
Q ss_pred ----eEEEEe-------cCCcccEEEEEecCHHHHHHHHHHhCC
Q 002823 259 ----IKEIRE-------TPQKIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 259 ----I~sVri-------tg~skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
|++|.+ ..-++.||.+.|-+..-|...+..|.-
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 334554 122568999999999999999987753
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.58 E-value=6.3 Score=34.72 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=36.1
Q ss_pred CCCcHHHHHHHhhhcCCe-----EEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 242 SSVSNDELHHIFGVYGEI-----KEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 242 ~svTeedLreiFs~fG~I-----~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
..++..+|..++..-+.| -.|++ ...|+||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 357788888888876554 34666 45689998764 5889999999999999999999864
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.43 E-value=2.3 Score=51.28 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=63.4
Q ss_pred ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 227 EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 227 ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
....+..++||+|+-..+..+-++.+...+|-|.+++... |||.+|..+..+.+|+..+.-..+.|+.+.+..
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3344567999999999999999999999999999877532 999999999999999999999999888776654
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.96 E-value=4.4 Score=44.92 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=48.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr 212 (876)
.=|-|-++|+. .-..|..+|++||.|.+.... ..-.+-+|.|.++-+|++||. .+|+.|.|.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 34555566654 345678899999999998864 667799999999999999995 588877764
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=73.23 E-value=2.4 Score=52.36 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=60.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcccccc--CCceeeEeecCCCC
Q 002823 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT--RSGKLDIHYSIPKD 223 (876)
Q Consensus 149 TLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l--~Gr~L~V~~A~pk~ 223 (876)
+.++.|.+-..+..-|..+|.+||.|.+++. -+.-..|.|+|...+.|..|+++++|+++ -|.+.+|.++++-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3444455556777888999999999999985 34566899999999999999999999984 58888998886544
No 210
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.54 E-value=5.9 Score=38.78 Aligned_cols=108 Identities=17% Similarity=0.068 Sum_probs=71.1
Q ss_pred CCCHHHHHHHhhc-cCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCCCccccc--cce
Q 002823 158 NIEDSELKALFEQ-YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEIN--QGT 234 (876)
Q Consensus 158 ~vTEeeL~elFsq-fG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~ek~~~--~~t 234 (876)
..+-..|...+.+ .+....+....-..++..+.|.+.++++++++ .....+.+..+.++.-.|.....+.... .--
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vW 106 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVW 106 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchh
Confidence 3556666655543 23222233223367899999999999999985 2334567777777665554443332222 224
Q ss_pred eEeecCCCC-CcHHHHHHHhhhcCCeEEEEecC
Q 002823 235 LVVFNLDSS-VSNDELHHIFGVYGEIKEIRETP 266 (876)
Q Consensus 235 LfV~NLP~s-vTeedLreiFs~fG~I~sVritg 266 (876)
|-|.|||.. .+++-++++.+.+|++.++....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 667899986 78888999999999999998743
No 211
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=64.51 E-value=37 Score=32.64 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=45.8
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCC-eEEEEe--cCC-cccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRE--TPQ-KIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~-I~sVri--tg~-skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
..+.+...|.-++.++|..+.+.+-. |..+++ ++. .+-.+.++|.+.++|.+-.+.+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34555555566666777766666655 444665 333 44568999999999999999999998864
No 212
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=62.99 E-value=4.2 Score=47.44 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCCCCCC-HHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 145 HPSRTLLLRKINSNIE-DSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vT-EeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.|-+.-.|.... .++|...|.+||+|..|.+... ---|.|+|.+..+|-+|. ..++..|+++.|+|.|-.+.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 3446677777777654 5789999999999999986333 456999999999997776 47899999999999997764
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=61.69 E-value=6.3 Score=47.74 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=62.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.-.+..++||+|+-..+..+-++.+...+|-|.+++... |+|..|.....+.+|+..+....+++.++.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 445678999999999999999999999999998877422 999999999999999999988889888876644
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.01 E-value=33 Score=41.33 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=59.7
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEE---------------eCCC------------------
Q 002823 141 LNDEHPSRTLLLRKINSN-IEDSELKALFEQY----GDVRTFY---------------RASK------------------ 182 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~-vTEeeL~elFsqf----G~I~sV~---------------~tgk------------------ 182 (876)
+..+.+++.|-|-||.|+ +...+|..+|..| |.|.+|. +.|.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 345678899999999997 7889999988855 4888876 1222
Q ss_pred -------------------ccceEeeecCCHHHHHHHHHHccccccC--CceeeEee
Q 002823 183 -------------------HCGFVTISYYDIRAARNAMKSLQNKLTR--SGKLDIHY 218 (876)
Q Consensus 183 -------------------srGfAFV~F~d~edA~kAl~~Lng~~l~--Gr~L~V~~ 218 (876)
..-||.|+|.+++.|.+..+.+.|..+. +..|.++|
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1247999999999999999999998875 34445544
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=55.83 E-value=47 Score=29.15 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=43.8
Q ss_pred CCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 002823 243 SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (876)
Q Consensus 243 svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkV 301 (876)
.++-++++..+..|+-. .|+. +..| -||.|.+.++|+++.+..+|..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57789999999999753 3433 1233 489999999999999999999998888765
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.20 E-value=61 Score=38.16 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=53.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC----CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYG----DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 211 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG----~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G 211 (876)
++.|+|-.+|..++-.||..+...+- .|+-|+..-..+-.+.|.|.+.++|....+.+||+.+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 88999999999999999998877543 444455433456679999999999999999999998764
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=49.20 E-value=48 Score=29.11 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 158 NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 158 ~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
.++-++++..+.+|+-.+-+. .+-=-||.|.+.++|+++.+..+++.+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~----d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRD----DRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEe----cCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 477899999999998543332 2223589999999999999999999887776654
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=47.16 E-value=53 Score=28.87 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=33.9
Q ss_pred CCCHHHHHHHhhccC-----CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 158 NIEDSELKALFEQYG-----DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 158 ~vTEeeL~elFsqfG-----~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.++..+|..++...+ .|-.|.. ...|+||+-.. +.|+++++.|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467788888887664 4445554 34588888754 5888999999999999999999764
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.29 E-value=78 Score=38.36 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=57.2
Q ss_pred ccceeEeecCCCC-CcHHHHHHHhhhc----CCeEEEEec---------------CC-------------c---------
Q 002823 231 NQGTLVVFNLDSS-VSNDELHHIFGVY----GEIKEIRET---------------PQ-------------K--------- 268 (876)
Q Consensus 231 ~~~tLfV~NLP~s-vTeedLreiFs~f----G~I~sVrit---------------g~-------------s--------- 268 (876)
.+++|-|.|++++ +..++|.-+|..| |.|.+|.|. +. .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4678999999986 8889999998855 478887761 11 0
Q ss_pred ------c---------cEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEee
Q 002823 269 ------I---------HQKYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPS 304 (876)
Q Consensus 269 ------k---------G~AFVeF~d~E~A~kAL~~LnG~~I~G--r~IkVs~A 304 (876)
| -||.|+|.+++.|.+....++|..+.. ..|-+.|.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 379999999999999999999999975 44444443
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.91 E-value=26 Score=38.62 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=44.8
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEE----------eCCCc-----cce---------Eeeec
Q 002823 148 RTLLLRKINSN------------IEDSELKALFEQYGDVRTFY----------RASKH-----CGF---------VTISY 191 (876)
Q Consensus 148 rTLFVgNLP~~------------vTEeeL~elFsqfG~I~sV~----------~tgks-----rGf---------AFV~F 191 (876)
.||++.+||-. -+++-|+..|+.||.|+.|. ++++. +|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 58999998843 35678999999999999886 23333 333 56777
Q ss_pred CCHHHHHHHHHHcccccc
Q 002823 192 YDIRAARNAMKSLQNKLT 209 (876)
Q Consensus 192 ~d~edA~kAl~~Lng~~l 209 (876)
.....-..|+..|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 777777777877777653
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.55 E-value=25 Score=38.71 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=47.6
Q ss_pred cceeEeecCCCC------------CcHHHHHHHhhhcCCeEEEEe----------cCCc-----ccE---------EEEE
Q 002823 232 QGTLVVFNLDSS------------VSNDELHHIFGVYGEIKEIRE----------TPQK-----IHQ---------KYIE 275 (876)
Q Consensus 232 ~~tLfV~NLP~s------------vTeedLreiFs~fG~I~sVri----------tg~s-----kG~---------AFVe 275 (876)
..||++.+||-. -+++-|+..|+.||.|..|.+ +++. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 348888888832 367889999999999998776 2222 122 4555
Q ss_pred ecCHHHHHHHHHHhCCcee----CC----eEEEEEeecC
Q 002823 276 FYDTRAAEAALRELNSRYI----AG----KQIKLEPSHL 306 (876)
Q Consensus 276 F~d~E~A~kAL~~LnG~~I----~G----r~IkVs~A~~ 306 (876)
|-...--..|+..|.|..+ .| -.++|.|.+.
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 5555555566666666543 22 3566666554
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.50 E-value=1.7e+02 Score=32.69 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=37.1
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeE-EEEecCCcccEEEEEecCHH
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIK-EIRETPQKIHQKYIEFYDTR 280 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~-sVritg~skG~AFVeF~d~E 280 (876)
.-|+|+||+.++.-.||+..+.+-|-+- ++.. ....+.||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 4699999999999999999998877642 3444 335678999998754
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=24.32 E-value=54 Score=34.32 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=53.1
Q ss_pred cEEEEcCCCCCCCHH-----HHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCc-eeeEeecCC
Q 002823 148 RTLLLRKINSNIEDS-----ELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG-KLDIHYSIP 221 (876)
Q Consensus 148 rTLFVgNLP~~vTEe-----eL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr-~L~V~~A~p 221 (876)
.++++.+|+..+-.+ ....+|.+|-+...... -++.+..-|.|.+++.|..|...++...+.|+ .++.-|+.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 467888887765432 23456666665444332 34667788999999999999999999999998 777777655
Q ss_pred C
Q 002823 222 K 222 (876)
Q Consensus 222 k 222 (876)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 3
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.22 E-value=1.6e+02 Score=34.30 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=43.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCe-EEEEecCCcccEEEEEecCHHHHHHHHHH
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRETPQKIHQKYIEFYDTRAAEAALRE 288 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I-~sVritg~skG~AFVeF~d~E~A~kAL~~ 288 (876)
...|-|.++|.....+||...|+.|+.- ..|+.. -+.++|-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhhc
Confidence 4478899999999999999999999862 122221 245899999999999999873
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=22.85 E-value=1.3e+02 Score=33.55 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeCCCccceEeeecCCHH
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDV-RTFYRASKHCGFVTISYYDIR 195 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I-~sV~~tgksrGfAFV~F~d~e 195 (876)
..-|+|+||+.++.-.+|+..+.+-+-+ .++. =.-++|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~is-wkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSIS-WKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEe-eecCCcceeEecCCcc
Confidence 3569999999999999999999877744 2222 1346788999997743
No 226
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=21.64 E-value=80 Score=33.13 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=49.9
Q ss_pred ceeEeecCCCCCcH-----HHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-EEEEEeecC
Q 002823 233 GTLVVFNLDSSVSN-----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QIKLEPSHL 306 (876)
Q Consensus 233 ~tLfV~NLP~svTe-----edLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr-~IkVs~A~~ 306 (876)
.++++.+++..+-. .....+|.+|-+..-.++ -++.+..-|.|.+.+.|..|...++...+.|+ .++.-++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 35667777654321 223445555554443333 22345677899999999999999999999998 888777765
Q ss_pred c
Q 002823 307 R 307 (876)
Q Consensus 307 k 307 (876)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 3
Done!