Query 002823
Match_columns 876
No_of_seqs 688 out of 2130
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 5.3E-30 1.8E-34 262.5 18.6 166 144-311 12-185 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 5.8E-29 2E-33 240.3 19.8 157 148-306 1-166 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 2.3E-28 7.9E-33 237.4 19.5 155 146-304 2-168 (168)
4 1fxl_A Paraneoplastic encephal 100.0 3.2E-28 1.1E-32 235.3 18.9 155 146-304 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 2.6E-28 8.9E-33 243.2 18.8 169 141-311 7-187 (196)
6 2qfj_A FBP-interacting repress 100.0 5.5E-28 1.9E-32 244.4 18.5 165 144-308 25-206 (216)
7 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-27 4.6E-32 252.9 21.6 164 143-306 5-282 (282)
8 1fje_B Nucleolin RBD12, protei 100.0 2.2E-28 7.5E-33 240.3 14.2 162 143-307 9-174 (175)
9 2adc_A Polypyrimidine tract-bi 100.0 1.5E-27 5.1E-32 246.9 20.8 165 143-307 30-228 (229)
10 2g4b_A Splicing factor U2AF 65 100.0 1.8E-27 6.1E-32 232.4 18.4 155 145-305 2-172 (172)
11 3nmr_A Cugbp ELAV-like family 100.0 2.9E-27 1E-31 230.6 19.2 157 146-305 2-175 (175)
12 2cjk_A Nuclear polyadenylated 100.0 5.3E-28 1.8E-32 235.0 13.8 155 146-307 2-166 (167)
13 2yh0_A Splicing factor U2AF 65 99.9 2.8E-27 9.7E-32 236.0 18.2 161 146-308 3-195 (198)
14 1qm9_A Polypyrimidine tract-bi 99.9 2.3E-27 7.9E-32 238.2 17.1 161 147-307 3-197 (198)
15 3tyt_A Heterogeneous nuclear r 99.9 7E-27 2.4E-31 239.9 19.7 160 145-304 2-204 (205)
16 3smz_A Protein raver-1, ribonu 99.9 6.1E-27 2.1E-31 248.2 18.3 166 145-311 93-268 (284)
17 2ghp_A U4/U6 snRNA-associated 99.9 1.6E-25 5.6E-30 238.1 18.5 161 146-307 116-291 (292)
18 3smz_A Protein raver-1, ribonu 99.9 3.8E-25 1.3E-29 234.4 20.7 152 145-308 20-176 (284)
19 3sde_A Paraspeckle component 1 99.9 3.2E-25 1.1E-29 234.0 18.2 157 144-311 19-183 (261)
20 2ghp_A U4/U6 snRNA-associated 99.9 1.2E-24 4.3E-29 231.3 18.0 192 141-369 35-235 (292)
21 2i2y_A Fusion protein consists 99.8 3.9E-19 1.3E-23 172.5 12.6 127 181-308 10-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 2E-18 6.8E-23 168.2 15.7 131 178-308 7-151 (158)
23 4f25_A Polyadenylate-binding p 99.8 2E-18 6.8E-23 160.9 10.2 103 146-248 4-113 (115)
24 3lqv_A PRE-mRNA branch site pr 99.6 2.2E-16 7.7E-21 146.0 7.7 104 143-258 4-109 (115)
25 4fxv_A ELAV-like protein 1; RN 99.6 6.3E-16 2.1E-20 140.8 9.2 75 147-221 19-98 (99)
26 4fxv_A ELAV-like protein 1; RN 99.6 1.1E-15 3.8E-20 139.1 10.6 75 232-306 19-98 (99)
27 2lea_A Serine/arginine-rich sp 99.6 6.5E-16 2.2E-20 148.4 7.1 119 185-308 5-128 (135)
28 3s8s_A Histone-lysine N-methyl 99.6 6.4E-15 2.2E-19 136.8 13.4 83 231-313 5-92 (110)
29 2hvz_A Splicing factor, argini 99.6 1.9E-15 6.6E-20 136.5 8.9 94 148-241 1-100 (101)
30 2lxi_A RNA-binding protein 10; 99.6 1.2E-15 4.2E-20 136.5 7.1 80 147-226 1-87 (91)
31 2do4_A Squamous cell carcinoma 99.6 6.2E-15 2.1E-19 132.9 11.7 83 142-224 12-98 (100)
32 1whw_A Hypothetical protein ri 99.6 9.3E-15 3.2E-19 131.4 12.1 83 144-226 5-92 (99)
33 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.2E-15 1.4E-19 146.7 10.7 123 189-311 11-156 (165)
34 3s8s_A Histone-lysine N-methyl 99.6 4.1E-15 1.4E-19 138.2 10.0 79 144-222 3-86 (110)
35 2cpz_A CUG triplet repeat RNA- 99.6 7.2E-15 2.5E-19 136.0 11.5 86 141-226 19-109 (115)
36 3r27_A HnRNP L, heterogeneous 99.6 6E-15 2E-19 135.7 10.3 80 143-223 17-98 (100)
37 4f25_A Polyadenylate-binding p 99.6 5.6E-15 1.9E-19 137.5 10.3 80 232-311 5-87 (115)
38 1x5u_A Splicing factor 3B subu 99.6 1.5E-14 5.2E-19 131.3 12.0 84 142-225 10-98 (105)
39 2dnm_A SRP46 splicing factor; 99.6 9.3E-15 3.2E-19 132.5 10.2 85 141-225 7-96 (103)
40 2dnz_A Probable RNA-binding pr 99.6 1.4E-14 4.8E-19 129.0 11.2 82 145-226 3-89 (95)
41 2dgs_A DAZ-associated protein 99.6 1.7E-14 5.8E-19 129.8 11.6 83 143-226 6-93 (99)
42 2wbr_A GW182, gawky, LD47780P; 99.6 9E-15 3.1E-19 131.4 9.6 81 232-313 7-87 (89)
43 2cph_A RNA binding motif prote 99.6 2E-14 6.9E-19 130.8 12.0 84 142-225 10-100 (107)
44 2d9p_A Polyadenylate-binding p 99.6 1.5E-14 5.1E-19 131.1 11.0 84 143-226 11-97 (103)
45 2dgo_A Cytotoxic granule-assoc 99.6 1.9E-14 6.6E-19 132.9 12.0 85 142-226 10-99 (115)
46 3md1_A Nuclear and cytoplasmic 99.6 1.1E-14 3.7E-19 126.4 9.7 77 147-223 1-82 (83)
47 2dgv_A HnRNP M, heterogeneous 99.6 1.3E-14 4.6E-19 128.4 10.4 83 143-225 4-89 (92)
48 1wex_A Hypothetical protein (r 99.6 1.7E-14 5.8E-19 133.0 11.5 84 141-225 9-94 (104)
49 1sjq_A Polypyrimidine tract-bi 99.6 1E-14 3.4E-19 135.3 9.9 83 143-226 12-96 (105)
50 1x4a_A Splicing factor, argini 99.6 1.8E-14 6.2E-19 132.0 11.6 84 142-225 17-102 (109)
51 2x1f_A MRNA 3'-END-processing 99.6 1.1E-14 3.9E-19 130.4 10.0 79 146-224 1-84 (96)
52 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.2E-15 2.8E-19 128.3 8.9 78 145-222 4-86 (87)
53 2cq0_A Eukaryotic translation 99.5 1.3E-14 4.4E-19 131.5 10.3 83 143-225 11-98 (103)
54 2cq3_A RNA-binding protein 9; 99.5 2.9E-14 1E-18 129.2 12.5 85 142-226 10-97 (103)
55 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.3E-14 8E-19 129.8 11.8 84 142-225 10-96 (103)
56 2ad9_A Polypyrimidine tract-bi 99.5 1.5E-14 5.2E-19 136.9 10.9 90 136-226 20-111 (119)
57 2lxi_A RNA-binding protein 10; 99.5 3.4E-15 1.2E-19 133.7 6.1 77 232-308 1-84 (91)
58 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.2E-14 7.4E-19 125.6 10.9 77 231-307 5-86 (87)
59 2e5h_A Zinc finger CCHC-type a 99.5 1.7E-14 5.9E-19 128.2 10.4 78 143-220 12-94 (94)
60 1why_A Hypothetical protein ri 99.5 3.1E-14 1.1E-18 127.8 12.0 81 143-224 13-95 (97)
61 1x4h_A RNA-binding protein 28; 99.5 2.9E-14 9.9E-19 130.6 12.0 85 142-226 10-105 (111)
62 2dnh_A Bruno-like 5, RNA bindi 99.5 2.7E-14 9.4E-19 129.6 11.7 83 143-225 11-100 (105)
63 3md1_A Nuclear and cytoplasmic 99.5 2.2E-14 7.5E-19 124.5 10.6 76 233-308 2-82 (83)
64 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.6E-14 5.6E-19 130.4 10.1 83 144-226 9-96 (102)
65 1p27_B RNA-binding protein 8A; 99.5 1.4E-14 4.8E-19 131.8 9.7 82 142-223 18-104 (106)
66 2do4_A Squamous cell carcinoma 99.5 2.4E-14 8.3E-19 129.0 11.1 79 230-308 15-97 (100)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.7E-14 5.9E-19 125.7 9.7 77 144-220 4-85 (85)
68 1x5s_A Cold-inducible RNA-bind 99.5 1.9E-14 6.6E-19 130.0 10.1 83 143-225 8-95 (102)
69 2cqc_A Arginine/serine-rich sp 99.5 1.8E-14 6.2E-19 128.1 9.7 79 143-221 11-94 (95)
70 1whw_A Hypothetical protein ri 99.5 2.6E-14 8.8E-19 128.5 10.7 80 230-309 6-90 (99)
71 1x4a_A Splicing factor, argini 99.5 3.3E-14 1.1E-18 130.3 11.7 79 230-308 20-100 (109)
72 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.9E-14 1.3E-18 128.4 12.0 81 230-310 13-96 (103)
73 2cpf_A RNA binding motif prote 99.5 2E-14 7E-19 128.9 10.0 81 145-225 3-91 (98)
74 2cq1_A PTB-like protein L; RRM 99.5 2.9E-14 1E-18 130.9 11.3 84 141-225 9-94 (101)
75 1x5t_A Splicing factor 3B subu 99.5 1.3E-14 4.6E-19 129.4 8.7 82 145-226 3-90 (96)
76 2jrs_A RNA-binding protein 39; 99.5 2E-14 6.9E-19 132.6 10.1 82 142-223 21-107 (108)
77 2cqc_A Arginine/serine-rich sp 99.5 5.1E-14 1.7E-18 125.2 12.2 77 230-306 13-94 (95)
78 2kxn_B Transformer-2 protein h 99.5 1.8E-14 6E-19 137.4 9.7 83 141-223 40-127 (129)
79 2dgp_A Bruno-like 4, RNA bindi 99.5 2.5E-14 8.7E-19 130.1 10.3 84 142-225 8-99 (106)
80 1x4d_A Matrin 3; structural ge 99.5 1.8E-14 6E-19 132.8 9.3 81 143-224 11-94 (102)
81 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.3E-14 1.1E-18 123.9 10.5 75 231-305 6-85 (85)
82 3r27_A HnRNP L, heterogeneous 99.5 2.2E-14 7.5E-19 131.9 9.8 78 230-308 19-98 (100)
83 2cqd_A RNA-binding region cont 99.5 3.9E-14 1.3E-18 131.3 11.5 83 142-225 12-99 (116)
84 2dgt_A RNA-binding protein 30; 99.5 3.6E-14 1.2E-18 126.2 10.8 83 140-225 3-85 (92)
85 2ywk_A Putative RNA-binding pr 99.5 1.6E-14 5.6E-19 128.6 8.6 80 141-220 10-93 (95)
86 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.1E-19 135.1 9.2 82 143-225 21-105 (112)
87 2cpz_A CUG triplet repeat RNA- 99.5 2.4E-14 8.3E-19 132.4 10.0 80 230-309 23-107 (115)
88 2d9p_A Polyadenylate-binding p 99.5 2.5E-14 8.6E-19 129.6 9.9 82 229-310 12-96 (103)
89 2x1f_A MRNA 3'-END-processing 99.5 4E-14 1.4E-18 126.8 11.1 79 232-310 2-85 (96)
90 2dnq_A RNA-binding protein 4B; 99.5 4E-14 1.4E-18 125.4 10.7 79 144-225 5-83 (90)
91 2khc_A Testis-specific RNP-typ 99.5 3.5E-14 1.2E-18 131.7 10.8 80 141-220 34-118 (118)
92 1wi8_A EIF-4B, eukaryotic tran 99.5 4.5E-14 1.5E-18 128.4 11.2 83 141-225 9-97 (104)
93 1oo0_B CG8781-PA, drosophila Y 99.5 3.6E-14 1.2E-18 130.1 10.7 81 230-310 24-109 (110)
94 1x5u_A Splicing factor 3B subu 99.5 3.2E-14 1.1E-18 129.2 10.0 79 230-308 13-96 (105)
95 1oo0_B CG8781-PA, drosophila Y 99.5 2.9E-14 1E-18 130.7 9.7 83 142-224 21-108 (110)
96 2cph_A RNA binding motif prote 99.5 4.3E-14 1.5E-18 128.6 10.7 81 229-309 12-99 (107)
97 3pgw_S U1-70K; protein-RNA com 99.5 9.7E-15 3.3E-19 166.0 7.9 145 164-308 9-183 (437)
98 2e5h_A Zinc finger CCHC-type a 99.5 7.2E-14 2.5E-18 124.2 11.7 76 230-305 14-94 (94)
99 2dhg_A TRNA selenocysteine ass 99.5 3.6E-14 1.2E-18 128.7 9.9 83 143-225 5-93 (104)
100 1fjc_A Nucleolin RBD2, protein 99.5 2.2E-14 7.5E-19 128.2 8.3 82 143-224 12-93 (96)
101 2cpj_A Non-POU domain-containi 99.5 4.1E-14 1.4E-18 127.5 10.1 81 143-224 11-91 (99)
102 2dnz_A Probable RNA-binding pr 99.5 3.7E-14 1.3E-18 126.3 9.7 78 231-308 4-86 (95)
103 2dgo_A Cytotoxic granule-assoc 99.5 5.9E-14 2E-18 129.6 11.4 81 230-310 13-98 (115)
104 2fc9_A NCL protein; structure 99.5 3.6E-14 1.2E-18 128.1 9.8 83 143-225 11-94 (101)
105 2cq0_A Eukaryotic translation 99.5 4.4E-14 1.5E-18 128.0 10.4 80 230-309 13-97 (103)
106 2dh8_A DAZ-associated protein 99.5 2.9E-14 9.8E-19 129.7 9.0 84 142-226 11-99 (105)
107 2ytc_A PRE-mRNA-splicing facto 99.5 4.2E-14 1.4E-18 123.4 9.8 78 142-220 7-85 (85)
108 2dnh_A Bruno-like 5, RNA bindi 99.5 4.6E-14 1.6E-18 128.1 10.4 81 230-310 13-100 (105)
109 1p27_B RNA-binding protein 8A; 99.5 3.7E-14 1.3E-18 129.0 9.7 79 230-308 21-104 (106)
110 3p5t_L Cleavage and polyadenyl 99.5 1.2E-14 4.1E-19 129.1 6.3 78 148-225 2-86 (90)
111 4a8x_A RNA-binding protein wit 99.5 3.7E-14 1.3E-18 124.2 9.3 77 232-308 4-86 (88)
112 1x4h_A RNA-binding protein 28; 99.5 6.1E-14 2.1E-18 128.4 11.2 81 230-310 13-104 (111)
113 1sjq_A Polypyrimidine tract-bi 99.5 2.1E-14 7.3E-19 133.1 8.1 79 231-310 15-95 (105)
114 2a3j_A U1 small nuclear ribonu 99.5 4.2E-14 1.4E-18 135.1 10.4 82 143-224 25-112 (127)
115 2cq3_A RNA-binding protein 9; 99.5 9.9E-14 3.4E-18 125.7 12.3 80 229-308 12-94 (103)
116 2lkz_A RNA-binding protein 5; 99.5 1.8E-14 6.2E-19 130.8 7.4 75 232-306 9-94 (95)
117 2div_A TRNA selenocysteine ass 99.5 4E-14 1.4E-18 127.2 9.6 80 144-223 6-95 (99)
118 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2.5E-14 8.4E-19 129.3 8.3 80 230-309 10-94 (102)
119 1nu4_A U1A RNA binding domain; 99.5 2.5E-14 8.7E-19 127.8 8.2 82 143-224 4-91 (97)
120 2dng_A Eukaryotic translation 99.5 6.4E-14 2.2E-18 127.1 10.8 83 141-225 9-96 (103)
121 4a8x_A RNA-binding protein wit 99.5 4.8E-14 1.6E-18 123.5 9.6 78 146-223 3-86 (88)
122 1x5s_A Cold-inducible RNA-bind 99.5 2.7E-14 9.3E-19 129.0 8.2 79 231-309 11-94 (102)
123 2e5j_A Methenyltetrahydrofolat 99.5 5.7E-14 2E-18 126.2 10.3 81 143-223 15-95 (97)
124 1wf1_A RNA-binding protein RAL 99.5 3.4E-14 1.2E-18 130.6 8.9 95 210-308 6-101 (110)
125 1u6f_A Tcubp1, RNA-binding pro 99.5 6.3E-14 2.1E-18 133.7 11.0 83 143-225 38-125 (139)
126 2fy1_A RNA-binding motif prote 99.5 5.8E-14 2E-18 131.1 10.5 83 143-225 3-89 (116)
127 2cpe_A RNA-binding protein EWS 99.5 5E-14 1.7E-18 129.8 9.9 83 143-225 11-106 (113)
128 2dgs_A DAZ-associated protein 99.5 5.6E-14 1.9E-18 126.4 10.0 79 230-309 8-91 (99)
129 2la6_A RNA-binding protein FUS 99.5 5.2E-14 1.8E-18 126.8 9.7 79 142-220 8-99 (99)
130 2fc8_A NCL protein; structure 99.5 5.5E-14 1.9E-18 127.0 9.8 83 143-225 11-95 (102)
131 1wf1_A RNA-binding protein RAL 99.5 9.7E-14 3.3E-18 127.5 11.6 79 143-224 23-102 (110)
132 2do0_A HnRNP M, heterogeneous 99.5 9.2E-14 3.2E-18 128.0 11.4 81 143-223 11-95 (114)
133 2ywk_A Putative RNA-binding pr 99.5 7.7E-14 2.6E-18 124.2 10.5 77 230-306 14-94 (95)
134 1why_A Hypothetical protein ri 99.5 7.7E-14 2.6E-18 125.2 10.5 78 230-308 15-94 (97)
135 2err_A Ataxin-2-binding protei 99.5 3.8E-14 1.3E-18 130.7 8.8 80 143-222 25-107 (109)
136 2cpx_A Hypothetical protein FL 99.5 5.2E-14 1.8E-18 129.8 9.6 84 143-226 21-109 (115)
137 2dgx_A KIAA0430 protein; RRM d 99.5 7.2E-14 2.5E-18 125.7 10.3 78 231-308 8-91 (96)
138 1p1t_A Cleavage stimulation fa 99.5 1.7E-14 5.7E-19 130.6 6.2 82 143-224 4-90 (104)
139 1u6f_A Tcubp1, RNA-binding pro 99.5 6.3E-14 2.1E-18 133.7 10.3 82 229-310 39-125 (139)
140 3ex7_B RNA-binding protein 8A; 99.5 6.6E-14 2.3E-18 131.4 10.3 84 142-225 17-105 (126)
141 1x5t_A Splicing factor 3B subu 99.5 3.4E-14 1.2E-18 126.8 8.0 79 231-309 4-88 (96)
142 2cq1_A PTB-like protein L; RRM 99.5 9E-14 3.1E-18 127.6 10.9 80 230-310 13-94 (101)
143 2dnm_A SRP46 splicing factor; 99.5 4.9E-14 1.7E-18 127.7 9.1 79 230-308 11-94 (103)
144 2cq4_A RNA binding motif prote 99.5 4.7E-14 1.6E-18 130.3 9.1 80 230-310 23-107 (114)
145 2lkz_A RNA-binding protein 5; 99.5 2.8E-14 9.5E-19 129.5 7.3 78 144-221 6-94 (95)
146 2la4_A Nuclear and cytoplasmic 99.5 4.1E-14 1.4E-18 127.8 8.4 78 144-222 24-101 (101)
147 2cpf_A RNA binding motif prote 99.5 4.6E-14 1.6E-18 126.6 8.7 78 231-308 4-89 (98)
148 1x4c_A Splicing factor, argini 99.5 1.4E-13 4.8E-18 126.4 12.1 81 143-225 11-96 (108)
149 3ns6_A Eukaryotic translation 99.5 1.5E-14 5.2E-19 131.3 5.5 79 144-222 3-93 (100)
150 2dgu_A Heterogeneous nuclear r 99.5 1.1E-13 3.8E-18 125.7 11.2 81 143-226 7-87 (103)
151 2dnq_A RNA-binding protein 4B; 99.5 6.4E-14 2.2E-18 124.0 9.3 76 230-308 6-81 (90)
152 2dgp_A Bruno-like 4, RNA bindi 99.5 6.3E-14 2.1E-18 127.5 9.5 81 229-309 10-98 (106)
153 2lea_A Serine/arginine-rich sp 99.5 3.2E-14 1.1E-18 136.6 7.9 88 139-226 39-131 (135)
154 2wbr_A GW182, gawky, LD47780P; 99.5 4.4E-14 1.5E-18 127.0 8.2 73 146-219 6-78 (89)
155 2ytc_A PRE-mRNA-splicing facto 99.5 8.7E-14 3E-18 121.4 9.9 75 230-305 10-85 (85)
156 2dgv_A HnRNP M, heterogeneous 99.5 5E-14 1.7E-18 124.7 8.5 78 231-308 7-87 (92)
157 1x4d_A Matrin 3; structural ge 99.5 5.1E-14 1.7E-18 129.7 8.8 76 231-307 14-92 (102)
158 2dgt_A RNA-binding protein 30; 99.5 1E-13 3.5E-18 123.3 10.4 76 230-308 8-83 (92)
159 2dnp_A RNA-binding protein 14; 99.5 1E-13 3.6E-18 122.7 10.5 80 143-225 5-84 (90)
160 3ulh_A THO complex subunit 4; 99.5 7.2E-14 2.5E-18 127.3 9.6 78 143-220 25-106 (107)
161 1p1t_A Cleavage stimulation fa 99.5 4.1E-14 1.4E-18 128.1 7.9 84 230-313 6-94 (104)
162 2cpd_A Apobec-1 stimulating pr 99.5 1.8E-13 6.2E-18 123.2 12.1 80 143-225 11-92 (99)
163 1fjc_A Nucleolin RBD2, protein 99.5 4.9E-14 1.7E-18 125.9 8.3 80 230-309 14-93 (96)
164 2err_A Ataxin-2-binding protei 99.5 7.5E-14 2.6E-18 128.7 9.7 79 229-307 26-107 (109)
165 2jrs_A RNA-binding protein 39; 99.5 8.1E-14 2.8E-18 128.5 9.9 80 229-308 23-107 (108)
166 1wex_A Hypothetical protein (r 99.5 5.6E-14 1.9E-18 129.6 8.8 78 230-308 13-92 (104)
167 2cqh_A IGF-II mRNA-binding pro 99.5 5.6E-14 1.9E-18 125.0 8.4 81 144-226 5-87 (93)
168 3p5t_L Cleavage and polyadenyl 99.5 2.2E-14 7.5E-19 127.4 5.7 76 233-308 2-84 (90)
169 2khc_A Testis-specific RNP-typ 99.5 9.7E-14 3.3E-18 128.8 10.3 76 230-305 38-118 (118)
170 2cpd_A Apobec-1 stimulating pr 99.5 1.7E-13 5.6E-18 123.5 11.5 76 230-308 13-90 (99)
171 2jvo_A Nucleolar protein 3; nu 99.5 7.5E-14 2.6E-18 128.9 9.4 79 229-310 28-106 (108)
172 1x5o_A RNA binding motif, sing 99.5 1.8E-13 6.2E-18 126.2 12.1 80 143-222 21-112 (114)
173 2ad9_A Polypyrimidine tract-bi 99.5 4.7E-14 1.6E-18 133.5 8.2 80 230-310 29-110 (119)
174 2nlw_A Eukaryotic translation 99.5 9.6E-14 3.3E-18 127.0 10.0 81 143-223 11-101 (105)
175 2dnp_A RNA-binding protein 14; 99.5 1.2E-13 4E-18 122.4 10.3 76 230-308 7-82 (90)
176 3ns6_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 129.0 7.0 77 232-308 6-94 (100)
177 2jvr_A Nucleolar protein 3; RN 99.5 8.4E-14 2.9E-18 130.1 9.7 77 232-308 28-106 (111)
178 2dgx_A KIAA0430 protein; RRM d 99.5 1.2E-13 4E-18 124.3 10.3 81 145-225 7-93 (96)
179 2cpj_A Non-POU domain-containi 99.5 7.6E-14 2.6E-18 125.7 9.1 78 230-308 13-90 (99)
180 2la4_A Nuclear and cytoplasmic 99.5 6E-14 2E-18 126.7 8.3 76 231-307 26-101 (101)
181 2dgu_A Heterogeneous nuclear r 99.5 9.5E-14 3.2E-18 126.1 9.6 77 231-310 10-86 (103)
182 2xnq_A Nuclear polyadenylated 99.5 1.7E-13 5.8E-18 123.9 11.2 76 230-308 20-96 (97)
183 2m2b_A RNA-binding protein 10; 99.5 4E-14 1.4E-18 134.6 7.3 84 141-225 17-111 (131)
184 2jvo_A Nucleolar protein 3; nu 99.5 8.7E-14 3E-18 128.4 9.3 81 141-224 25-105 (108)
185 2la6_A RNA-binding protein FUS 99.5 1.3E-13 4.5E-18 124.1 10.2 76 230-305 11-99 (99)
186 2xnq_A Nuclear polyadenylated 99.5 1.5E-13 5.2E-18 124.2 10.6 77 143-222 18-95 (97)
187 1x4g_A Nucleolysin TIAR; struc 99.5 1.2E-13 4E-18 126.8 10.0 78 231-309 24-101 (109)
188 1x4e_A RNA binding motif, sing 99.5 4E-14 1.4E-18 123.7 6.5 76 145-220 3-83 (85)
189 1x4g_A Nucleolysin TIAR; struc 99.5 1.3E-13 4.5E-18 126.5 10.2 82 143-225 21-102 (109)
190 3ucg_A Polyadenylate-binding p 99.5 1E-13 3.6E-18 121.7 9.1 76 146-222 5-85 (89)
191 2cqg_A TDP-43, TAR DNA-binding 99.5 2.4E-13 8.1E-18 123.2 11.7 82 143-226 11-97 (103)
192 3ucg_A Polyadenylate-binding p 99.5 1.1E-13 3.8E-18 121.5 9.3 76 231-307 5-85 (89)
193 1whx_A Hypothetical protein ri 99.5 6.5E-14 2.2E-18 129.8 8.0 78 144-222 7-84 (111)
194 1whx_A Hypothetical protein ri 99.5 1.1E-13 3.8E-18 128.2 9.5 77 231-308 9-85 (111)
195 2kxn_B Transformer-2 protein h 99.5 9.2E-14 3.1E-18 132.5 9.2 79 230-308 44-127 (129)
196 2kvi_A Nuclear polyadenylated 99.5 8E-14 2.7E-18 125.2 8.3 80 143-225 6-86 (96)
197 3ulh_A THO complex subunit 4; 99.5 1.9E-13 6.5E-18 124.5 10.9 76 230-305 27-106 (107)
198 1nu4_A U1A RNA binding domain; 99.5 1E-13 3.5E-18 123.9 8.9 80 231-310 7-92 (97)
199 2e5j_A Methenyltetrahydrofolat 99.5 9.3E-14 3.2E-18 124.9 8.6 79 230-308 17-95 (97)
200 2a3j_A U1 small nuclear ribonu 99.5 1.3E-13 4.5E-18 131.6 10.1 81 231-311 28-114 (127)
201 2do0_A HnRNP M, heterogeneous 99.5 1.7E-13 5.9E-18 126.1 10.6 79 230-308 13-95 (114)
202 2cpe_A RNA-binding protein EWS 99.5 1.2E-13 3.9E-18 127.3 9.4 80 230-309 13-105 (113)
203 2cqp_A RNA-binding protein 12; 99.5 6E-14 2E-18 125.8 7.2 80 143-222 11-95 (98)
204 2dis_A Unnamed protein product 99.5 1.4E-13 4.7E-18 125.8 9.7 82 145-226 6-96 (109)
205 3s7r_A Heterogeneous nuclear r 99.5 1.2E-13 4.1E-18 121.2 8.9 76 143-219 7-87 (87)
206 1h2v_Z 20 kDa nuclear CAP bind 99.5 2E-13 6.7E-18 133.1 11.3 82 143-224 35-121 (156)
207 1x5p_A Negative elongation fac 99.5 3.3E-13 1.1E-17 121.3 11.9 80 143-225 11-90 (97)
208 2dng_A Eukaryotic translation 99.5 1.8E-13 6.3E-18 124.1 10.3 78 230-309 13-95 (103)
209 1wi8_A EIF-4B, eukaryotic tran 99.5 1.4E-13 4.8E-18 125.0 9.6 79 230-310 13-97 (104)
210 2dgw_A Probable RNA-binding pr 99.5 1.8E-13 6.2E-18 121.2 10.0 79 143-223 6-88 (91)
211 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7E-14 2.4E-18 126.7 7.5 79 143-223 15-99 (100)
212 1x4c_A Splicing factor, argini 99.5 1.8E-13 6.1E-18 125.7 10.3 76 231-308 14-94 (108)
213 2cpi_A CCR4-NOT transcription 99.5 8.5E-14 2.9E-18 128.6 8.2 81 143-223 11-102 (111)
214 2kn4_A Immunoglobulin G-bindin 99.5 2.1E-13 7.1E-18 132.7 11.3 84 143-226 66-154 (158)
215 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.3E-13 7.9E-18 129.2 11.3 77 143-219 59-140 (140)
216 1h2v_Z 20 kDa nuclear CAP bind 99.5 2E-13 7E-18 133.0 11.1 81 230-310 37-122 (156)
217 2cqd_A RNA-binding region cont 99.5 1.8E-13 6.1E-18 126.8 10.1 79 229-308 14-97 (116)
218 2fy1_A RNA-binding motif prote 99.5 1.2E-13 4.1E-18 129.0 8.9 78 231-308 6-87 (116)
219 2jvr_A Nucleolar protein 3; RN 99.5 1.1E-13 3.6E-18 129.4 8.5 79 144-222 25-105 (111)
220 2cpx_A Hypothetical protein FL 99.5 1E-13 3.6E-18 127.8 8.4 81 230-310 23-108 (115)
221 2i2y_A Fusion protein consists 99.5 2.3E-13 7.7E-18 131.8 11.1 81 143-223 69-149 (150)
222 2kt5_A RNA and export factor-b 99.5 2.2E-13 7.4E-18 127.8 10.6 83 143-225 31-117 (124)
223 2fc8_A NCL protein; structure 99.5 2E-13 6.8E-18 123.3 9.9 81 229-309 12-94 (102)
224 2dhg_A TRNA selenocysteine ass 99.5 9.1E-14 3.1E-18 126.0 7.7 80 231-310 8-93 (104)
225 2nlw_A Eukaryotic translation 99.4 1.7E-13 5.8E-18 125.3 9.4 78 230-307 13-100 (105)
226 2cqp_A RNA-binding protein 12; 99.4 1.4E-13 4.7E-18 123.4 8.6 78 230-307 13-95 (98)
227 2ek1_A RNA-binding protein 12; 99.4 4.5E-14 1.5E-18 125.7 5.3 77 144-220 12-93 (95)
228 2kvi_A Nuclear polyadenylated 99.4 1.1E-13 3.9E-18 124.2 8.0 77 230-309 8-85 (96)
229 3ex7_B RNA-binding protein 8A; 99.4 1.4E-13 4.7E-18 129.2 8.9 81 230-310 20-105 (126)
230 2div_A TRNA selenocysteine ass 99.4 1.3E-13 4.5E-18 123.8 8.3 78 231-308 8-95 (99)
231 2cpi_A CCR4-NOT transcription 99.4 1.8E-13 6.3E-18 126.3 9.5 79 230-308 13-102 (111)
232 3n9u_C Cleavage and polyadenyl 99.4 2.1E-13 7.2E-18 134.3 10.4 80 232-311 55-141 (156)
233 2krb_A Eukaryotic translation 99.4 1.1E-13 3.8E-18 120.3 7.4 70 147-216 1-80 (81)
234 2rs2_A Musashi-1, RNA-binding 99.4 1.8E-13 6.2E-18 126.3 9.3 82 143-225 21-107 (109)
235 2fc9_A NCL protein; structure 99.4 1.3E-13 4.5E-18 124.4 8.2 79 230-308 13-92 (101)
236 1x4b_A Heterogeneous nuclear r 99.4 1.1E-13 3.7E-18 128.2 7.8 81 144-225 24-109 (116)
237 2jwn_A Embryonic polyadenylate 99.4 4.8E-14 1.6E-18 131.9 5.4 76 231-307 35-115 (124)
238 3lqv_A PRE-mRNA branch site pr 99.4 1.9E-13 6.5E-18 126.2 9.3 80 231-310 7-88 (115)
239 2hvz_A Splicing factor, argini 99.4 7.7E-14 2.6E-18 126.0 6.4 76 233-308 1-76 (101)
240 2cqh_A IGF-II mRNA-binding pro 99.4 1.2E-13 4E-18 122.9 7.4 77 231-309 7-85 (93)
241 2cq4_A RNA binding motif prote 99.4 7.5E-14 2.6E-18 128.9 6.3 78 144-222 22-104 (114)
242 1x4b_A Heterogeneous nuclear r 99.4 1.5E-13 5.2E-18 127.2 8.4 80 229-309 24-108 (116)
243 1wg5_A Heterogeneous nuclear r 99.4 3E-13 1E-17 123.5 10.1 80 143-223 11-95 (104)
244 2kt5_A RNA and export factor-b 99.4 5.7E-13 2E-17 124.9 12.1 79 230-308 33-115 (124)
245 2dh8_A DAZ-associated protein 99.4 1.7E-13 5.7E-18 124.6 8.2 79 230-309 14-97 (105)
246 1x5p_A Negative elongation fac 99.4 4.7E-13 1.6E-17 120.2 11.1 77 230-309 13-89 (97)
247 2ek1_A RNA-binding protein 12; 99.4 1.3E-13 4.4E-18 122.8 7.2 76 231-306 14-94 (95)
248 3s7r_A Heterogeneous nuclear r 99.4 4E-13 1.4E-17 117.8 10.2 74 230-304 9-87 (87)
249 1sjr_A Polypyrimidine tract-bi 99.4 3E-13 1E-17 134.7 10.4 77 232-308 46-125 (164)
250 3n9u_C Cleavage and polyadenyl 99.4 1.4E-13 4.8E-18 135.6 7.9 78 145-222 53-137 (156)
251 1s79_A Lupus LA protein; RRM, 99.4 1.8E-13 6.2E-18 125.7 8.0 78 143-221 7-88 (103)
252 3zzy_A Polypyrimidine tract-bi 99.4 3.1E-13 1.1E-17 129.8 9.9 76 233-308 29-107 (130)
253 1wg1_A KIAA1579 protein, homol 99.4 2E-13 7E-18 120.6 8.0 76 145-222 3-78 (88)
254 1fj7_A Nucleolin RBD1, protein 99.4 8.6E-14 2.9E-18 125.7 5.7 81 144-225 14-98 (101)
255 2rs2_A Musashi-1, RNA-binding 99.4 2.7E-13 9.4E-18 125.0 9.0 79 230-309 23-106 (109)
256 1s79_A Lupus LA protein; RRM, 99.4 2.3E-13 8E-18 125.0 8.5 80 230-310 9-92 (103)
257 2e44_A Insulin-like growth fac 99.4 5.4E-13 1.8E-17 119.2 10.4 80 144-223 12-93 (96)
258 2mss_A Protein (musashi1); RNA 99.4 1.5E-13 5.3E-18 117.2 6.5 70 149-219 1-75 (75)
259 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 6.8E-13 2.3E-17 125.9 11.5 75 230-304 61-140 (140)
260 2cpy_A RNA-binding protein 12; 99.4 2.7E-13 9.1E-18 125.8 8.4 83 230-313 13-100 (114)
261 2ki2_A SS-DNA binding protein 99.4 6E-14 2E-18 123.9 3.9 77 148-225 2-83 (90)
262 1wel_A RNA-binding protein 12; 99.4 9.5E-14 3.2E-18 130.6 5.4 79 143-222 21-104 (124)
263 2mss_A Protein (musashi1); RNA 99.4 1.8E-13 6E-18 116.8 6.6 70 234-304 1-75 (75)
264 1x4f_A Matrin 3; structural ge 99.4 1.3E-13 4.6E-18 129.1 6.2 78 230-308 23-103 (112)
265 1wg1_A KIAA1579 protein, homol 99.4 3.2E-13 1.1E-17 119.4 8.3 75 231-307 4-78 (88)
266 2jwn_A Embryonic polyadenylate 99.4 1.5E-13 5.3E-18 128.5 6.4 79 145-224 34-117 (124)
267 2e44_A Insulin-like growth fac 99.4 5.6E-13 1.9E-17 119.0 9.7 78 231-308 14-93 (96)
268 2dis_A Unnamed protein product 99.4 3.6E-13 1.2E-17 123.1 8.6 79 231-309 7-94 (109)
269 2diu_A KIAA0430 protein; struc 99.4 7.1E-13 2.4E-17 120.4 10.4 78 145-227 6-89 (96)
270 3egn_A RNA-binding protein 40; 99.4 4.8E-13 1.6E-17 128.5 9.8 83 143-225 41-133 (143)
271 2dgw_A Probable RNA-binding pr 99.4 6.6E-13 2.2E-17 117.6 10.0 76 231-308 9-88 (91)
272 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4E-13 1.4E-17 132.6 9.5 85 141-225 66-155 (165)
273 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.5E-13 5.2E-18 117.5 5.6 71 148-219 1-76 (77)
274 1sjr_A Polypyrimidine tract-bi 99.4 6.9E-13 2.4E-17 132.1 11.2 83 143-225 42-127 (164)
275 1x4e_A RNA binding motif, sing 99.4 8.8E-14 3E-18 121.5 4.2 76 231-306 4-84 (85)
276 1x5o_A RNA binding motif, sing 99.4 6.5E-13 2.2E-17 122.5 10.2 78 230-307 23-112 (114)
277 2hgl_A HNRPF protein, heteroge 99.4 3.1E-13 1.1E-17 130.5 8.3 82 231-313 43-131 (136)
278 2krb_A Eukaryotic translation 99.4 2.1E-13 7.3E-18 118.5 6.4 69 233-301 2-80 (81)
279 2cq2_A Hypothetical protein LO 99.4 5.1E-13 1.7E-17 125.6 9.4 80 143-223 21-107 (114)
280 2db1_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 125.6 8.8 81 231-312 16-103 (118)
281 2cqg_A TDP-43, TAR DNA-binding 99.4 1.2E-12 4.1E-17 118.5 11.5 77 230-308 13-94 (103)
282 2ki2_A SS-DNA binding protein 99.4 1.2E-13 4E-18 122.0 4.3 75 233-308 2-81 (90)
283 2m2b_A RNA-binding protein 10; 99.4 1.5E-13 5.2E-18 130.5 5.4 78 230-308 21-109 (131)
284 3zzy_A Polypyrimidine tract-bi 99.4 6.8E-13 2.3E-17 127.5 9.9 81 145-225 26-109 (130)
285 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.9E-13 6.7E-18 123.7 5.8 77 230-308 17-99 (100)
286 2e5g_A U6 snRNA-specific termi 99.4 1.3E-12 4.4E-17 116.7 10.8 80 145-225 6-85 (94)
287 1fj7_A Nucleolin RBD1, protein 99.4 1.5E-13 5.2E-18 124.0 4.5 79 231-310 16-98 (101)
288 3d2w_A TAR DNA-binding protein 99.4 6.5E-13 2.2E-17 118.4 8.3 78 143-224 7-86 (89)
289 2cpy_A RNA-binding protein 12; 99.4 3E-13 1E-17 125.5 6.3 80 143-223 11-95 (114)
290 1wg5_A Heterogeneous nuclear r 99.4 9.1E-13 3.1E-17 120.3 9.3 78 230-308 13-95 (104)
291 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.9E-13 9.9E-18 115.7 5.4 71 233-304 1-76 (77)
292 3d2w_A TAR DNA-binding protein 99.4 1.7E-12 5.7E-17 115.8 10.2 77 230-310 9-87 (89)
293 2db1_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 125.7 6.5 78 144-222 14-98 (118)
294 2lcw_A RNA-binding protein FUS 99.1 4.6E-14 1.6E-18 130.9 0.0 83 143-225 3-98 (116)
295 3egn_A RNA-binding protein 40; 99.4 7E-13 2.4E-17 127.4 8.1 80 231-310 44-133 (143)
296 2xs2_A Deleted in azoospermia- 99.4 2.1E-13 7.1E-18 123.4 4.2 81 143-225 5-89 (102)
297 1wez_A HnRNP H', FTP-3, hetero 99.4 8.5E-13 2.9E-17 120.7 8.2 79 143-223 11-93 (102)
298 1wel_A RNA-binding protein 12; 99.4 3.2E-13 1.1E-17 127.0 5.4 80 231-311 24-108 (124)
299 2e5i_A Heterogeneous nuclear r 99.4 1.4E-12 4.7E-17 124.3 9.8 74 234-308 27-103 (124)
300 1wf0_A TDP-43, TAR DNA-binding 99.4 7.3E-13 2.5E-17 116.8 7.2 79 145-225 3-81 (88)
301 3q2s_C Cleavage and polyadenyl 99.4 7E-13 2.4E-17 138.3 8.3 80 232-311 68-154 (229)
302 2cq2_A Hypothetical protein LO 99.4 1.2E-12 4.2E-17 123.0 9.0 75 231-306 24-105 (114)
303 2lmi_A GRSF-1, G-rich sequence 99.4 5.2E-13 1.8E-17 122.5 6.1 82 231-313 10-98 (107)
304 3tyt_A Heterogeneous nuclear r 99.4 1.8E-12 6.2E-17 132.8 10.8 76 231-306 3-79 (205)
305 1iqt_A AUF1, heterogeneous nuc 99.4 4.6E-13 1.6E-17 114.1 5.2 70 149-219 1-75 (75)
306 2hzc_A Splicing factor U2AF 65 99.4 1.3E-12 4.5E-17 114.2 8.1 72 145-218 4-86 (87)
307 2e5g_A U6 snRNA-specific termi 99.3 1.5E-12 5.3E-17 116.2 8.5 77 231-308 7-83 (94)
308 1fje_B Nucleolin RBD12, protei 99.3 1.4E-12 5E-17 127.5 8.9 80 143-222 95-174 (175)
309 2e5i_A Heterogeneous nuclear r 99.3 4.6E-12 1.6E-16 120.7 11.8 79 145-224 21-104 (124)
310 3beg_B Splicing factor, argini 99.3 1.4E-12 4.9E-17 121.4 7.8 75 231-307 15-94 (115)
311 2hzc_A Splicing factor U2AF 65 99.3 3.5E-12 1.2E-16 111.5 9.9 71 231-303 5-86 (87)
312 3md3_A Nuclear and cytoplasmic 99.3 3.1E-12 1.1E-16 122.9 10.4 79 143-221 83-166 (166)
313 2lcw_A RNA-binding protein FUS 99.0 1.1E-13 3.9E-18 128.3 0.0 81 230-310 5-98 (116)
314 3beg_B Splicing factor, argini 99.3 1.8E-12 6.3E-17 120.6 8.2 77 145-223 14-95 (115)
315 1fxl_A Paraneoplastic encephal 99.3 4.2E-12 1.4E-16 122.1 11.0 77 232-308 2-83 (167)
316 2hgl_A HNRPF protein, heteroge 99.3 8.7E-13 3E-17 127.4 6.1 78 143-221 40-124 (136)
317 2dnn_A RNA-binding protein 12; 99.3 3.8E-12 1.3E-16 118.3 10.2 76 231-308 15-94 (109)
318 1iqt_A AUF1, heterogeneous nuc 99.3 6.5E-13 2.2E-17 113.1 4.7 70 234-304 1-75 (75)
319 2voo_A Lupus LA protein; RNA-b 99.3 6.4E-12 2.2E-16 127.7 12.7 115 193-308 63-188 (193)
320 2f3j_A RNA and export factor b 99.3 2E-12 6.9E-17 129.8 8.8 80 143-222 84-167 (177)
321 2bz2_A Negative elongation fac 99.3 2.6E-12 8.7E-17 121.2 8.9 79 143-224 35-113 (121)
322 1b7f_A Protein (SXL-lethal pro 99.3 4E-12 1.4E-16 122.8 10.4 77 232-308 3-84 (168)
323 3q2s_C Cleavage and polyadenyl 99.3 1.2E-12 4E-17 136.6 6.9 76 146-221 67-149 (229)
324 1wez_A HnRNP H', FTP-3, hetero 99.3 1.2E-12 4E-17 119.8 6.0 76 231-308 14-93 (102)
325 2hgn_A Heterogeneous nuclear r 99.3 4.6E-13 1.6E-17 129.8 3.5 120 185-309 2-125 (139)
326 2lmi_A GRSF-1, G-rich sequence 99.3 8.3E-13 2.8E-17 121.2 4.9 79 143-222 7-92 (107)
327 2xs2_A Deleted in azoospermia- 99.3 2E-12 6.7E-17 116.9 7.0 78 230-309 7-88 (102)
328 2qfj_A FBP-interacting repress 99.3 4.4E-12 1.5E-16 127.7 10.4 81 145-225 123-208 (216)
329 2bz2_A Negative elongation fac 99.3 2.5E-12 8.7E-17 121.3 8.0 78 231-311 38-115 (121)
330 4f02_A Polyadenylate-binding p 99.3 6.2E-12 2.1E-16 128.4 11.4 109 231-369 14-127 (213)
331 2diu_A KIAA0430 protein; struc 99.3 3.1E-12 1.1E-16 116.2 8.1 71 233-308 10-85 (96)
332 1wf0_A TDP-43, TAR DNA-binding 99.3 1.1E-12 3.8E-17 115.6 4.9 77 231-309 4-80 (88)
333 2dnn_A RNA-binding protein 12; 99.3 1.7E-12 6E-17 120.6 6.1 75 145-221 14-92 (109)
334 2f3j_A RNA and export factor b 99.3 5.1E-12 1.7E-16 126.9 9.6 78 231-308 87-168 (177)
335 2dha_A FLJ20171 protein; RRM d 99.3 1.9E-12 6.5E-17 123.0 6.1 82 231-313 22-111 (123)
336 2yh0_A Splicing factor U2AF 65 99.3 6E-12 2E-16 125.1 9.6 81 144-224 111-196 (198)
337 2hgn_A Heterogeneous nuclear r 99.3 1.7E-12 5.9E-17 125.8 5.4 80 143-224 42-125 (139)
338 2cjk_A Nuclear polyadenylated 99.3 3.9E-12 1.3E-16 123.0 7.7 78 145-223 85-167 (167)
339 2dnl_A Cytoplasmic polyadenyla 99.3 9.9E-12 3.4E-16 115.2 9.5 74 144-220 5-86 (114)
340 2dit_A HIV TAT specific factor 99.3 1.8E-11 6.2E-16 113.2 11.0 83 143-225 11-105 (112)
341 2g4b_A Splicing factor U2AF 65 99.3 9.1E-12 3.1E-16 121.0 9.3 76 144-219 91-171 (172)
342 2hgm_A HNRPF protein, heteroge 99.3 4.4E-12 1.5E-16 121.1 6.6 77 143-221 38-120 (126)
343 3nmr_A Cugbp ELAV-like family 99.3 1.2E-11 4.1E-16 120.0 9.6 78 143-220 91-175 (175)
344 2dha_A FLJ20171 protein; RRM d 99.2 3.2E-12 1.1E-16 121.4 5.1 76 145-221 21-104 (123)
345 1l3k_A Heterogeneous nuclear r 99.2 2E-11 6.7E-16 121.1 10.8 113 230-369 11-128 (196)
346 3u1l_A PRE-mRNA-splicing facto 99.2 1.2E-11 4.1E-16 130.2 9.7 80 229-309 131-231 (240)
347 3u1l_A PRE-mRNA-splicing facto 99.2 8.4E-12 2.9E-16 131.4 8.4 81 144-225 131-232 (240)
348 3pgw_S U1-70K; protein-RNA com 99.2 1.6E-11 5.3E-16 139.7 10.7 81 144-224 99-184 (437)
349 2hgm_A HNRPF protein, heteroge 99.2 6.3E-12 2.1E-16 120.0 6.1 76 231-308 41-122 (126)
350 1qm9_A Polypyrimidine tract-bi 99.2 3.5E-11 1.2E-15 120.3 11.5 79 144-222 117-197 (198)
351 3pgw_A U1-A; protein-RNA compl 99.2 2.6E-11 9E-16 127.9 11.0 79 230-308 7-91 (282)
352 3sde_A Paraspeckle component 1 99.2 3E-11 1E-15 127.2 11.1 76 230-306 20-95 (261)
353 2adc_A Polypyrimidine tract-bi 99.2 2.7E-11 9.3E-16 125.0 10.5 79 144-222 148-228 (229)
354 2dit_A HIV TAT specific factor 99.2 5.1E-11 1.7E-15 110.2 11.1 79 230-308 13-103 (112)
355 2pe8_A Splicing factor 45; RRM 99.2 5.7E-11 1.9E-15 109.6 10.3 78 231-308 7-95 (105)
356 2pe8_A Splicing factor 45; RRM 99.2 3.4E-11 1.2E-15 111.1 8.7 78 144-221 5-93 (105)
357 2dnl_A Cytoplasmic polyadenyla 99.2 3.4E-11 1.2E-15 111.6 8.2 75 231-308 7-89 (114)
358 2j8a_A Histone-lysine N-methyl 99.2 3.1E-11 1.1E-15 115.6 7.2 79 233-311 3-100 (136)
359 2voo_A Lupus LA protein; RNA-b 99.1 9.8E-11 3.4E-15 119.0 8.9 75 146-221 108-186 (193)
360 2j8a_A Histone-lysine N-methyl 99.1 5.7E-11 1.9E-15 113.8 5.6 72 148-219 3-93 (136)
361 3v4m_A Splicing factor U2AF 65 99.1 1.7E-10 5.9E-15 106.3 8.4 78 144-221 2-96 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.1E-10 7.1E-15 105.2 8.8 65 242-308 27-91 (100)
363 3v4m_A Splicing factor U2AF 65 99.1 2.8E-10 9.6E-15 104.9 8.8 78 231-308 4-98 (105)
364 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.2E-09 4.1E-14 100.2 11.6 76 147-224 10-92 (100)
365 1jmt_A Splicing factor U2AF 35 99.0 1.7E-10 5.9E-15 106.0 5.0 68 237-304 20-103 (104)
366 3ue2_A Poly(U)-binding-splicin 99.0 6.7E-10 2.3E-14 104.7 8.3 76 145-220 18-107 (118)
367 3tht_A Alkylated DNA repair pr 99.0 5.2E-10 1.8E-14 123.5 8.8 76 143-219 14-96 (345)
368 3tht_A Alkylated DNA repair pr 99.0 1E-09 3.5E-14 121.2 9.6 75 230-305 16-97 (345)
369 1jmt_A Splicing factor U2AF 35 99.0 2.4E-10 8.2E-15 105.1 3.4 68 152-219 20-103 (104)
370 3s6e_A RNA-binding protein 39; 98.9 2.9E-09 9.8E-14 99.9 9.8 81 231-311 6-97 (114)
371 3ue2_A Poly(U)-binding-splicin 98.9 2.7E-09 9.1E-14 100.6 9.3 77 231-307 19-109 (118)
372 3s6e_A RNA-binding protein 39; 98.8 6.7E-09 2.3E-13 97.4 8.9 77 144-220 4-91 (114)
373 1uw4_A UPF3X; nonsense mediate 98.8 1.6E-08 5.3E-13 91.4 8.3 84 706-791 2-88 (91)
374 2dnr_A Synaptojanin-1; RRM dom 98.7 6E-08 2.1E-12 87.4 8.7 75 230-308 5-87 (91)
375 1owx_A Lupus LA protein, SS-B, 98.6 1.1E-07 3.6E-12 90.3 8.9 80 231-311 17-100 (121)
376 2l08_A Regulator of nonsense t 98.6 2E-08 6.8E-13 91.5 3.4 85 705-791 9-96 (97)
377 1ufw_A Synaptojanin 2; RNP dom 98.4 3.3E-07 1.1E-11 83.1 7.1 73 230-306 13-94 (95)
378 2dnr_A Synaptojanin-1; RRM dom 98.4 3.5E-07 1.2E-11 82.4 7.1 74 145-222 5-86 (91)
379 1owx_A Lupus LA protein, SS-B, 98.4 9.4E-07 3.2E-11 83.8 9.2 76 143-219 14-93 (121)
380 3dxb_A Thioredoxin N-terminall 98.3 1.2E-06 4E-11 89.8 7.8 65 243-307 140-213 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.1 2.9E-06 1E-10 77.0 6.3 73 144-220 12-93 (95)
382 3dxb_A Thioredoxin N-terminall 98.1 2.9E-06 1E-10 86.8 7.3 62 159-220 141-211 (222)
383 2l9w_A U4/U6 snRNA-associated- 97.7 0.00012 4.3E-09 67.9 9.1 71 232-303 21-96 (117)
384 2l9w_A U4/U6 snRNA-associated- 97.5 0.00027 9.2E-09 65.7 8.2 72 145-217 19-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.3 0.0017 5.7E-08 59.8 11.2 88 146-245 7-99 (104)
386 2dhx_A Poly (ADP-ribose) polym 96.8 0.0048 1.7E-07 56.7 9.0 78 232-313 8-90 (104)
387 1wey_A Calcipressin 1; structu 96.7 0.0021 7.1E-08 59.3 6.1 76 147-223 5-85 (104)
388 1wey_A Calcipressin 1; structu 96.7 0.0022 7.4E-08 59.2 5.9 76 232-308 5-85 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.3 0.017 5.8E-07 54.5 9.8 76 230-308 22-98 (119)
390 1uw4_A UPF3X; nonsense mediate 95.7 0.043 1.5E-06 49.4 9.0 64 233-296 2-72 (91)
391 1whv_A Poly(A)-specific ribonu 94.8 0.088 3E-06 48.0 8.0 55 147-205 16-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 94.0 0.14 4.8E-06 48.3 7.8 71 146-219 23-94 (119)
393 1whv_A Poly(A)-specific ribonu 93.3 0.19 6.4E-06 45.9 7.2 53 234-290 18-70 (100)
394 3pq1_A Poly(A) RNA polymerase; 92.6 0.051 1.7E-06 62.2 3.1 56 231-287 52-107 (464)
395 2l08_A Regulator of nonsense t 92.4 0.21 7E-06 45.5 6.2 73 232-304 9-93 (97)
396 3pq1_A Poly(A) RNA polymerase; 92.4 0.05 1.7E-06 62.2 2.7 58 145-203 51-108 (464)
397 3ctr_A Poly(A)-specific ribonu 92.4 0.13 4.6E-06 46.9 4.8 53 234-290 8-60 (101)
398 3p3d_A Nucleoporin 53; structu 92.2 0.18 6.3E-06 48.2 5.8 73 232-306 7-98 (132)
399 3ctr_A Poly(A)-specific ribonu 90.7 0.13 4.5E-06 47.0 2.9 54 148-205 7-60 (101)
400 3p3d_A Nucleoporin 53; structu 88.3 0.4 1.4E-05 45.9 4.4 70 148-219 8-96 (132)
401 3d45_A Poly(A)-specific ribonu 69.0 9 0.00031 44.2 8.0 55 147-205 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 65.7 12 0.00041 43.2 8.1 55 233-291 441-495 (507)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=5.3e-30 Score=262.52 Aligned_cols=166 Identities=17% Similarity=0.320 Sum_probs=148.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..|.+||||+|||+++|+++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 46789999999999999999999999999999998 3578899999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 002823 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (876)
Q Consensus 219 A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~ 295 (876)
+...... ......+|||+|||.++++++|+++|++||.|+.|++ ...++|||||+|.+.++|.+|++.|||..|.
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 8654322 2234568999999999999999999999999999887 3446899999999999999999999999999
Q ss_pred CeEEEEEeecCchhHH
Q 002823 296 GKQIKLEPSHLRGLRK 311 (876)
Q Consensus 296 Gr~IkVs~A~~k~~Rr 311 (876)
|++|+|.+++++.+|+
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999987665
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.8e-29 Score=240.29 Aligned_cols=157 Identities=17% Similarity=0.285 Sum_probs=143.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~ 223 (876)
|+|||+|||.++++++|+++|++||+|.+++. .++++|||||+|.+.++|++|++.+++..+.|+.|.|.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 69999999999999999999999999999983 46689999999999999999999999999999999999997765
Q ss_pred CCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 002823 224 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (876)
Q Consensus 224 ~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~ 298 (876)
... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QSS--SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CCC--CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCC--CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 432 345679999999999999999999999999999887 3567899999999999999999999999999999
Q ss_pred EEEEeecC
Q 002823 299 IKLEPSHL 306 (876)
Q Consensus 299 IkVs~A~~ 306 (876)
|+|.|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.3e-28 Score=237.37 Aligned_cols=155 Identities=23% Similarity=0.430 Sum_probs=142.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
++++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 578999999999999999999999999999998 256688999999999999999999999999999999999998
Q ss_pred CCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~ 295 (876)
++... ....+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSST----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCccc----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 76543 34679999999999999999999999999999887 4456799999999999999999999999998
Q ss_pred C--eEEEEEee
Q 002823 296 G--KQIKLEPS 304 (876)
Q Consensus 296 G--r~IkVs~A 304 (876)
| ++|+|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 7 99999986
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=3.2e-28 Score=235.30 Aligned_cols=155 Identities=23% Similarity=0.408 Sum_probs=141.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
++++|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999882 67788999999999999999999999999999999999998
Q ss_pred CCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~ 295 (876)
++.. .....+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6543 234678999999999999999999999999999887 3456899999999999999999999999999
Q ss_pred Ce--EEEEEee
Q 002823 296 GK--QIKLEPS 304 (876)
Q Consensus 296 Gr--~IkVs~A 304 (876)
|+ +|+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 96 4888885
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.6e-28 Score=243.17 Aligned_cols=169 Identities=14% Similarity=0.288 Sum_probs=141.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+....+.++|||+|||+++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 345567899999999999999999999999999999882 467899999999999999999976 88999999999
Q ss_pred EeecCCCCCCCc--cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHH
Q 002823 216 IHYSIPKDNPSE--KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRE 288 (876)
Q Consensus 216 V~~A~pk~~~~e--k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~ 288 (876)
|.++.++..... ......+|||+|||.++++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 999877654322 2234579999999999999999999999999999887 455789999999999999999986
Q ss_pred hCCceeCCeEEEEEeecCchhHH
Q 002823 289 LNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 289 LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
++..|.|++|+|.|+.++.+.+
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999977553
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=5.5e-28 Score=244.39 Aligned_cols=165 Identities=15% Similarity=0.279 Sum_probs=145.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.++|||+|||.++|+++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 345789999999999999999999999999999984 577899999999999999999999999999999999998
Q ss_pred cCCCCCCCc-------cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHH
Q 002823 219 SIPKDNPSE-------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAAL 286 (876)
Q Consensus 219 A~pk~~~~e-------k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL 286 (876)
+..+..... ......+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 876542211 1234569999999999999999999999999999887 3456899999999999999999
Q ss_pred HHhCCceeCCeEEEEEeecCch
Q 002823 287 RELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 287 ~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
+.|||..|.|++|+|.|+.++.
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCS
T ss_pred HHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999998864
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.3e-27 Score=252.93 Aligned_cols=164 Identities=23% Similarity=0.373 Sum_probs=146.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~----elFsqfG~I~sV~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
+..++++|||+|||.++++++|+ ++|++||.|.+|+ .+++++|||||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 46778999999999999999977 8999999999998 36789999999999999999999999999999999999
Q ss_pred eecCCCCCCC----------------------------------------------------------------------
Q 002823 217 HYSIPKDNPS---------------------------------------------------------------------- 226 (876)
Q Consensus 217 ~~A~pk~~~~---------------------------------------------------------------------- 226 (876)
.|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9987654210
Q ss_pred -------------------------------------ccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcc
Q 002823 227 -------------------------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKI 269 (876)
Q Consensus 227 -------------------------------------ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~sk 269 (876)
.......+|||+|||..+++++|+++|++||.|++|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0111346899999999999999999999999999999976667
Q ss_pred cEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEeecC
Q 002823 270 HQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHL 306 (876)
Q Consensus 270 G~AFVeF~d~E~A~kAL~~LnG~~I~-Gr~IkVs~A~~ 306 (876)
|||||+|.+.++|.+|++.|||..|. |++|+|+|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 8
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=2.2e-28 Score=240.27 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=145.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE----EeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTF----YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV----~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...+.++|||+|||.++++++|+++|.+||.|..+ ..+++++|||||+|.+.++|++|+ +|++..+.|++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 45678999999999999999999999999865431 245789999999999999999999 5999999999999999
Q ss_pred cCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 002823 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (876)
Q Consensus 219 A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~ 298 (876)
+.++.... .....+|||+|||.++++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..|.|++
T Consensus 88 ~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSKK--VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCST--TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCccccc--cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 98765432 3456799999999999999999999999999988557788999999999999999999999999999999
Q ss_pred EEEEeecCc
Q 002823 299 IKLEPSHLR 307 (876)
Q Consensus 299 IkVs~A~~k 307 (876)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999875
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.5e-27 Score=246.94 Aligned_cols=165 Identities=20% Similarity=0.226 Sum_probs=148.0
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~-~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
...++++|||+|||+ ++++++|+++|++||.|..|+.....+|||||+|.+.++|++|++.|++..+.|++|+|.++.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 346789999999999 9999999999999999999997556689999999999999999999999999999999999976
Q ss_pred CCCCCcc-------------------------------ccccceeEeecCCCCCcHHHHHHHhhhcC-CeEEEEecCCcc
Q 002823 222 KDNPSEK-------------------------------EINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRETPQKI 269 (876)
Q Consensus 222 k~~~~ek-------------------------------~~~~~tLfV~NLP~svTeedLreiFs~fG-~I~sVritg~sk 269 (876)
+.....+ ..+..+|||+|||..+++++|+++|++|| .|..|++....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 5211100 11356899999999999999999999999 999999977779
Q ss_pred cEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEeecCc
Q 002823 270 HQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHLR 307 (876)
Q Consensus 270 G~AFVeF~d~E~A~kAL~~LnG~~I~-Gr~IkVs~A~~k 307 (876)
++|||+|.+.++|.+|++.|+|..+. |++|+|.|++++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999874
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.8e-27 Score=232.35 Aligned_cols=155 Identities=15% Similarity=0.270 Sum_probs=140.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCce
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqf----G-------~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~ 213 (876)
+++++|||+|||+++|+++|+++|++| | .|..++. ++++|||||+|.+.++|++|+ .+++..+.|++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 357899999999999999999999999 7 7888775 677999999999999999999 89999999999
Q ss_pred eeEeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHH
Q 002823 214 LDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRE 288 (876)
Q Consensus 214 L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~ 288 (876)
|+|.++.+.... ....+|||+|||..+++++|+++|++||.|..|++ ++.++|+|||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999997655432 23679999999999999999999999999999887 455689999999999999999999
Q ss_pred hCCceeCCeEEEEEeec
Q 002823 289 LNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 289 LnG~~I~Gr~IkVs~A~ 305 (876)
|||..+.|++|+|+||.
T Consensus 156 l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred cCCCEECCeEEEEEeCC
Confidence 99999999999999973
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=2.9e-27 Score=230.65 Aligned_cols=157 Identities=16% Similarity=0.316 Sum_probs=138.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CC--CccceEeeecCCHHHHHHHHHHccccccC---Cceee
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----AS--KHCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLD 215 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tg--ksrGfAFV~F~d~edA~kAl~~Lng~~l~---Gr~L~ 215 (876)
.+++|||+|||+++++++|+++|++||+|.+++. ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999882 22 78999999999999999999999998875 67888
Q ss_pred EeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCC
Q 002823 216 IHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 216 V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
+.++.++... .....+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKNN---AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCCS---CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Eccccccccc---cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 8887655433 235679999999999999999999999999999887 445689999999999999999999999
Q ss_pred ceeC---CeEEEEEeec
Q 002823 292 RYIA---GKQIKLEPSH 305 (876)
Q Consensus 292 ~~I~---Gr~IkVs~A~ 305 (876)
..+. +++|+|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999973
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=5.3e-28 Score=235.01 Aligned_cols=155 Identities=17% Similarity=0.328 Sum_probs=140.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
++++|||+|||+++|+++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999998 2577899999999999999999984 568999999999987
Q ss_pred CCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeC
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 295 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~ 295 (876)
++.. .....+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ +++..+.
T Consensus 80 ~~~~----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRDE----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHHH----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chhh----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 6432 234669999999999999999999999999999987 35568999999999999999998 8999999
Q ss_pred CeEEEEEeecCc
Q 002823 296 GKQIKLEPSHLR 307 (876)
Q Consensus 296 Gr~IkVs~A~~k 307 (876)
|++|+|.|+.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999886
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.8e-27 Score=236.05 Aligned_cols=161 Identities=15% Similarity=0.253 Sum_probs=142.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCcee
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqf----G-------~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L 214 (876)
.+++|||+|||+++++++|+++|++| | .|..++. ++++|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 47899999999999999999999999 5 6777765 678999999999999999999 899999999999
Q ss_pred eEeecCCCCCCCc----------------cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEE
Q 002823 215 DIHYSIPKDNPSE----------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKY 273 (876)
Q Consensus 215 ~V~~A~pk~~~~e----------------k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AF 273 (876)
+|.++.++..... ......+|||+|||..+++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999876532210 1134579999999999999999999999999999887 445689999
Q ss_pred EEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 274 IEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 274 VeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
|+|.+.++|.+|++.|||..|.|++|+|.|++++.
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999865
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.3e-27 Score=238.17 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=145.2
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCC
Q 002823 147 SRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP 225 (876)
Q Consensus 147 SrTLFVgNLP~-~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~ 225 (876)
+++|||+|||+ ++++++|+++|++||.|..|+.....+|||||+|.+.++|++|++.|++..+.|++|+|.++.++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 58999999999 99999999999999999999965556899999999999999999999999999999999999765321
Q ss_pred Ccc-------------------------------ccccceeEeecCCCCCcHHHHHHHhhhcC-CeEEEEecCCcccEEE
Q 002823 226 SEK-------------------------------EINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRETPQKIHQKY 273 (876)
Q Consensus 226 ~ek-------------------------------~~~~~tLfV~NLP~svTeedLreiFs~fG-~I~sVritg~skG~AF 273 (876)
..+ ..+..+|||+|||..+++++|+++|++|| .|.+|++.+..+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~af 162 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 162 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEE
Confidence 100 12366899999999999999999999999 9999999777799999
Q ss_pred EEecCHHHHHHHHHHhCCceeC-CeEEEEEeecCc
Q 002823 274 IEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHLR 307 (876)
Q Consensus 274 VeF~d~E~A~kAL~~LnG~~I~-Gr~IkVs~A~~k 307 (876)
|+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 163 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 163 IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999 999999999874
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=7e-27 Score=239.89 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=138.0
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 002823 145 HPSRTLLLRKIN-SNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (876)
Q Consensus 145 ~pSrTLFVgNLP-~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~ 223 (876)
.++++|||+||| ..+++++|+++|++||.|.+|+.....+|||||+|.+.++|++|++.|+|..+.|++|+|.++..+.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 357899999999 8999999999999999999999766679999999999999999999999999999999999986432
Q ss_pred CCCc------------c---------------------ccccceeEeecCCCCCcHHHHHHHhhhcCCe--EEEEecC--
Q 002823 224 NPSE------------K---------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEI--KEIRETP-- 266 (876)
Q Consensus 224 ~~~e------------k---------------------~~~~~tLfV~NLP~svTeedLreiFs~fG~I--~sVritg-- 266 (876)
.... + ..+..+|||+|||.++++++|+++|++||.| .+|++..
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 1000 0 0124579999999999999999999999999 8888732
Q ss_pred -CcccEEEEEecCHHHHHHHHHHhCCceeCCe----EEEEEee
Q 002823 267 -QKIHQKYIEFYDTRAAEAALRELNSRYIAGK----QIKLEPS 304 (876)
Q Consensus 267 -~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr----~IkVs~A 304 (876)
..+|+|||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3468999999999999999999999999885 6666664
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=6.1e-27 Score=248.16 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=150.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+.++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|.+|++.|++..+.|++|.|.|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3568999999999999999999999999999887 25778999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccceeEeecCCCCC-cHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCcee
Q 002823 220 IPKDNPSEKEINQGTLVVFNLDSSV-SNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 294 (876)
Q Consensus 220 ~pk~~~~ek~~~~~tLfV~NLP~sv-TeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I 294 (876)
.++.... ......+|||+|||.++ ++++|+++|+.||.|..|++ ++.++|+|||+|.+.++|.+|++.|||..+
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765443 23456799999999995 99999999999999999887 455789999999999999999999999999
Q ss_pred CCeEEEEEeecCchhHH
Q 002823 295 AGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 295 ~Gr~IkVs~A~~k~~Rr 311 (876)
.|++|+|.|+.++..++
T Consensus 252 ~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TTEECEEEECCSSSCHH
T ss_pred CCeEEEEEEecCCCccc
Confidence 99999999999998776
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.6e-25 Score=238.10 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=141.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG-~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
..++|||+|||+++++++|+++|++|| .|..|+. .++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999982 35689999999999999999999999999999999999998
Q ss_pred CCCCCCc---cccccceeEeecCCCC-CcHHHHHHHhhhcCCeEEEEec------CCcccEEEEEecCHHHHHHHHHHhC
Q 002823 221 PKDNPSE---KEINQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELN 290 (876)
Q Consensus 221 pk~~~~e---k~~~~~tLfV~NLP~s-vTeedLreiFs~fG~I~sVrit------g~skG~AFVeF~d~E~A~kAL~~Ln 290 (876)
++..... ......+|||+|||.. +++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 7765432 2235579999999999 9999999999999999999982 567899999999999999999 999
Q ss_pred CceeCCeEEEEEeecCc
Q 002823 291 SRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 291 G~~I~Gr~IkVs~A~~k 307 (876)
|..|.|++|+|.|++++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999886
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=3.8e-25 Score=234.41 Aligned_cols=152 Identities=16% Similarity=0.285 Sum_probs=141.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~ 224 (876)
.++++|||+|||.++|+++|+++|++|| |..++. ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 4578999999999999999999999999 999987 7889999999999999999999999999999999999853
Q ss_pred CCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 002823 225 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (876)
Q Consensus 225 ~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~I 299 (876)
...+|||+|||.++++++|+++|+.||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999876 45578999999999999999999999999999999
Q ss_pred EEEeecCch
Q 002823 300 KLEPSHLRG 308 (876)
Q Consensus 300 kVs~A~~k~ 308 (876)
+|.|+.++.
T Consensus 168 ~v~~a~~~~ 176 (284)
T 3smz_A 168 YVHWTDAGQ 176 (284)
T ss_dssp EEEECCGGG
T ss_pred EEEECCCCC
Confidence 999998753
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=3.2e-25 Score=234.01 Aligned_cols=157 Identities=22% Similarity=0.352 Sum_probs=142.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~ 223 (876)
..+.++|||+|||+++|+++|+++|++||.|..|+. .+++|||||+|.+.++|++|++.+++..+.|+.|+|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 355689999999999999999999999999999987 56799999999999999999999999999999999999864
Q ss_pred CCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhC-CceeC---
Q 002823 224 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELN-SRYIA--- 295 (876)
Q Consensus 224 ~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~Ln-G~~I~--- 295 (876)
..+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|+ +..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 458999999999999999999999999999887 55678999999999999999999995 45554
Q ss_pred CeEEEEEeecCchhHH
Q 002823 296 GKQIKLEPSHLRGLRK 311 (876)
Q Consensus 296 Gr~IkVs~A~~k~~Rr 311 (876)
+++|.|.++.+...++
T Consensus 168 ~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 168 PRPVIVEPMEQFDDED 183 (261)
T ss_dssp CCBCEEEECCCEESSS
T ss_pred CceEEEeeccccCccC
Confidence 8999999998876433
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=1.2e-24 Score=231.30 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=151.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~---tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
+..+.+.++|||+|||+++|+++|+++|++||+|..|+. ...++|||||+|.+.++|++|+ .+++..+.|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEE
Confidence 345677899999999999999999999999999999983 2335899999999999999999 599999999999999
Q ss_pred ecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcC-CeEEEEec----CCcccEEEEEecCHHHHHHHHHHhCCc
Q 002823 218 YSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSR 292 (876)
Q Consensus 218 ~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG-~I~sVrit----g~skG~AFVeF~d~E~A~kAL~~LnG~ 292 (876)
++ ...+|||+|||..+++++|+++|+.|| .|..|++. +..+|||||+|.+.++|.+|++.|+|.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 256899999999999999999999999 99999872 356899999999999999999999999
Q ss_pred eeCCeEEEEEeecCchhHHHHhhcCCchhhhhhcCCCCCCCCCCCCCCCCcccceeeeccCchh-hhHHHHHHhhccc
Q 002823 293 YIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGMITIVISLPLN-VKSLAIIYLFTGA 369 (876)
Q Consensus 293 ~I~Gr~IkVs~A~~k~~Rr~l~qQ~~~q~~q~~~g~~~~gsp~~~sp~~~~~~~~~~~fssP~n-~~~~~l~~l~~~~ 369 (876)
.+.|++|+|.++.++...... ..... ....-..-+.|.+ +....|..+|...
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~---------------------~~~~~----~~~~l~v~nlp~~~~t~~~l~~~F~~~ 235 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT---------------------DSATL----EGREIMIRNLSTELLDENLLRESFEGF 235 (292)
T ss_dssp EETTEECEEEECCCC------------------------------CC----TTTEEEEEEECTTTCCHHHHHHHHGGG
T ss_pred EeCCcEEEEEECCCCcccccc---------------------cccCC----CCceEEEECCCcccCCHHHHHHHHhcc
Confidence 999999999999876533211 00000 1112233466777 7777788888764
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=3.9e-19 Score=172.46 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=113.0
Q ss_pred CCccceEeeecCCHHHHHHHHHHc-cccccCCceeeEeecCCCC------------CCCccccccceeEeecCCCCCcHH
Q 002823 181 SKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKLDIHYSIPKD------------NPSEKEINQGTLVVFNLDSSVSND 247 (876)
Q Consensus 181 gksrGfAFV~F~d~edA~kAl~~L-ng~~l~Gr~L~V~~A~pk~------------~~~ek~~~~~tLfV~NLP~svTee 247 (876)
.+.+|+++|+|.+.++|++|++.+ ++..+.| .+.+.++.++. .........++|||+|||.+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 99999886531 112223356799999999999999
Q ss_pred HHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 248 ELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 248 dLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
+|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..|.|++|+|+|++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999976689999999999999999999999999999999999998753
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=2e-18 Score=168.21 Aligned_cols=131 Identities=19% Similarity=0.267 Sum_probs=104.6
Q ss_pred EeCCCccceEeeecCCHHHHHHHHHHccccccCCceee-------EeecCCCCC--CCccccccceeEeecCCCCCcHHH
Q 002823 178 YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD-------IHYSIPKDN--PSEKEINQGTLVVFNLDSSVSNDE 248 (876)
Q Consensus 178 ~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~-------V~~A~pk~~--~~ek~~~~~tLfV~NLP~svTeed 248 (876)
....+.+|||||+|.+.++|++|++.+++.......+. ......... .........+|||+|||.++++++
T Consensus 7 ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 86 (158)
T 2kn4_A 7 LNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDT 86 (158)
T ss_dssp EECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHH
T ss_pred ecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 34557899999999999999999998886543222222 222211111 112223467999999999999999
Q ss_pred HHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 249 LHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 249 LreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|.|++++.
T Consensus 87 l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 87 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999987 45678999999999999999999999999999999999998864
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=2e-18 Score=160.92 Aligned_cols=103 Identities=12% Similarity=0.246 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
.+.+|||+|||+++++++|+++|++||.|.+|+ ..+.+||||||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 357999999999999999999999999999987 34567999999999999999999999999999999999999877
Q ss_pred CCCCc----cccccceeEeecCCCCCcHHH
Q 002823 223 DNPSE----KEINQGTLVVFNLDSSVSNDE 248 (876)
Q Consensus 223 ~~~~e----k~~~~~tLfV~NLP~svTeed 248 (876)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 122345899999999998863
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=2.2e-16 Score=145.96 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=92.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~--tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
...++++|||+|||.++++++|+++|++||.|..|+. .+.++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3467899999999999999999999999999999983 56779999999999999999999999999999999999987
Q ss_pred CCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCC
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGE 258 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~ 258 (876)
++... .+++...++++|.++|++||.
T Consensus 84 ~~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 64322 466778899999999999985
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=140.80 Aligned_cols=75 Identities=23% Similarity=0.448 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
+++|||+|||+++|+++|+++|++||+|.+++ .+++++|||||+|.+.++|++|++.|+|..+.|++|+|+|++|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 57999999999999999999999999999987 3578999999999999999999999999999999999999976
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=139.12 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=70.7
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.++|||+|||.++|+++|+++|++||+|++|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+|++|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 458999999999999999999999999999887 466789999999999999999999999999999999999986
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=6.5e-16 Score=148.35 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=76.5
Q ss_pred ceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe
Q 002823 185 GFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 264 (876)
Q Consensus 185 GfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri 264 (876)
-++|++|.+...|..|+..+++....|+. .+.+..+ .......++|||+|||.++++++|+++|++||.|+.|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36888999999999999999887766553 2233333 223345679999999999999999999999999999988
Q ss_pred -----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 265 -----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 265 -----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
++..+|||||+|.+.++|++|++.|||..|.|++|+|+|++++.
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 45678999999999999999999999999999999999998765
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=6.4e-15 Score=136.83 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=76.7
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
+.++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4679999999999999999999999999999887 46788999999999999999999999999999999999999
Q ss_pred CchhHHHH
Q 002823 306 LRGLRKCL 313 (876)
Q Consensus 306 ~k~~Rr~l 313 (876)
.+..|+++
T Consensus 85 ~~~~~~~~ 92 (110)
T 3s8s_A 85 KGQQRMKY 92 (110)
T ss_dssp TTHHHHHH
T ss_pred CCcHHHHH
Confidence 88776644
No 29
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=136.50 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=81.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCCCc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSE 227 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~e 227 (876)
++|||+|||.++++++|+++|++||+|..++....++|||||+|.+.++|++|++.|++..+.|++|+|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 48999999999999999999999999999985444899999999999999999999999999999999999987764322
Q ss_pred c------ccccceeEeecCC
Q 002823 228 K------EINQGTLVVFNLD 241 (876)
Q Consensus 228 k------~~~~~tLfV~NLP 241 (876)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1235589999997
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=136.53 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEE-----eCCCccceEeeecCCHHHHHHHHHHcc-ccccCCceeeEeec
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYG-DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQ-NKLTRSGKLDIHYS 219 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG-~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Ln-g~~l~Gr~L~V~~A 219 (876)
+++|||+|||+++|+++|+++|++|| .|.+|+ .++++||||||+|.+.++|++|++.++ +..+.|++|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 798887 357899999999999999999999874 56799999999999
Q ss_pred CCCCCCC
Q 002823 220 IPKDNPS 226 (876)
Q Consensus 220 ~pk~~~~ 226 (876)
.|+....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 9876554
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.2e-15 Score=132.94 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
....+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999883 46788999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002823 218 YSIPKDN 224 (876)
Q Consensus 218 ~A~pk~~ 224 (876)
|+.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9988754
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=9.3e-15 Score=131.37 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..++++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999983 677899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002823 219 SIPKDNPS 226 (876)
Q Consensus 219 A~pk~~~~ 226 (876)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 98876543
No 33
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=4.2e-15 Score=146.69 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=73.3
Q ss_pred eecCCHHHHHHHHHHccccccC--CceeeEeecCCCC----------------CCCccccccceeEeecCCCCCcHHHHH
Q 002823 189 ISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSIPKD----------------NPSEKEINQGTLVVFNLDSSVSNDELH 250 (876)
Q Consensus 189 V~F~d~edA~kAl~~Lng~~l~--Gr~L~V~~A~pk~----------------~~~ek~~~~~tLfV~NLP~svTeedLr 250 (876)
.+|.+.++|+.|+..+++.... |+.+...+..... ..........+|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6789999999999999887654 6666655432110 011122345689999999999999999
Q ss_pred HHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhHH
Q 002823 251 HIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 251 eiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
++|++||.|..|++ ++..+|||||+|.+.++|.+||+.|||..|.|++|+|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999887 44568999999999999999999999999999999999998876554
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=138.17 Aligned_cols=79 Identities=22% Similarity=0.433 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
+.|.++|||+|||+++++++|+++|++||+|.+|+ .+++++|||||+|.+.++|++|++.|+|+.+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999988 3588999999999999999999999999999999999999
Q ss_pred cCCC
Q 002823 219 SIPK 222 (876)
Q Consensus 219 A~pk 222 (876)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=7.2e-15 Score=135.99 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
.....+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345567799999999999999999999999999988872 677899999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q 002823 216 IHYSIPKDNPS 226 (876)
Q Consensus 216 V~~A~pk~~~~ 226 (876)
|+|+.++....
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99998876543
No 36
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=135.67 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccc--cCCceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~--l~Gr~L~V~~A~ 220 (876)
...|+++|||+|||.++|+++|+++|++||.|.+++. .+.||||||+|.+.++|++|++.|++.. +.|++|+|+|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4568899999999999999999999999999999986 3578999999999999999999999976 789999999998
Q ss_pred CCC
Q 002823 221 PKD 223 (876)
Q Consensus 221 pk~ 223 (876)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=5.6e-15 Score=137.52 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=72.3
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
.++|||+|||.++++++|+++|++||.|++|++ ...++|||||+|.+.++|++|++.|+|..|.|++|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 468999999999999999999999999999887 34468999999999999999999999999999999999998876
Q ss_pred hHH
Q 002823 309 LRK 311 (876)
Q Consensus 309 ~Rr 311 (876)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 554
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=131.31 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 35567899999999999999999999999999999983 6778999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002823 217 HYSIPKDNP 225 (876)
Q Consensus 217 ~~A~pk~~~ 225 (876)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887554
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.3e-15 Score=132.46 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+....+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 445677899999999999999999999999999999983 477899999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 002823 216 IHYSIPKDNP 225 (876)
Q Consensus 216 V~~A~pk~~~ 225 (876)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876544
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=129.04 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.++++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999982 4678999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 002823 220 IPKDNPS 226 (876)
Q Consensus 220 ~pk~~~~ 226 (876)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8876543
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=129.82 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++ |++..+.|++|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999983 46789999999999999999998 99999999999999
Q ss_pred ecCCCCCCC
Q 002823 218 YSIPKDNPS 226 (876)
Q Consensus 218 ~A~pk~~~~ 226 (876)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998876543
No 42
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=9e-15 Score=131.41 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=73.5
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhHH
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~Rr 311 (876)
...|||+||++.+|+++|+++|.+||+|+++++ ..+||||||+|.+.++|++|++.||+.++.|++|+|+++...+..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~~~ 85 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQS 85 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHHHH
Confidence 568999999999999999999999999999998 4489999999999999999999999999999999999996545444
Q ss_pred HH
Q 002823 312 CL 313 (876)
Q Consensus 312 ~l 313 (876)
.+
T Consensus 86 ~~ 87 (89)
T 2wbr_A 86 IM 87 (89)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=130.77 Aligned_cols=84 Identities=18% Similarity=0.378 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CCCccceEeeecCCHHHHHHHHHHc-cccccCCcee
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKL 214 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~------tgksrGfAFV~F~d~edA~kAl~~L-ng~~l~Gr~L 214 (876)
..+.+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.| ++..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 35677899999999999999999999999999999984 5667999999999999999999999 9999999999
Q ss_pred eEeecCCCCCC
Q 002823 215 DIHYSIPKDNP 225 (876)
Q Consensus 215 ~V~~A~pk~~~ 225 (876)
+|.|+.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887654
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=131.13 Aligned_cols=84 Identities=14% Similarity=0.326 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~---tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
...+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4567899999999999999999999999999999883 4678999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 002823 220 IPKDNPS 226 (876)
Q Consensus 220 ~pk~~~~ 226 (876)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8876544
No 45
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=1.9e-14 Score=132.91 Aligned_cols=85 Identities=15% Similarity=0.334 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999883 5678999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 002823 217 HYSIPKDNPS 226 (876)
Q Consensus 217 ~~A~pk~~~~ 226 (876)
.|+.++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998876543
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.1e-14 Score=126.40 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
+.+|||+|||.++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999987 2577899999999999999999999999999999999999987
Q ss_pred CC
Q 002823 222 KD 223 (876)
Q Consensus 222 k~ 223 (876)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 47
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.55 E-value=1.3e-14 Score=128.43 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
...+.++|||+|||.++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|++..+.|++|+|+++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345679999999999999999999999999999988 35678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002823 220 IPKDNP 225 (876)
Q Consensus 220 ~pk~~~ 225 (876)
.++...
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=133.05 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccc--cCCceeeEee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHY 218 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~--l~Gr~L~V~~ 218 (876)
+....|+++|||+|||+++++++|+++|++||.|..|+.. +.||||||+|.+.++|++|++.|++.. +.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3456788999999999999999999999999999999853 358999999999999999999998754 9999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9876543
No 49
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=135.29 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccc--cccCCceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng--~~l~Gr~L~V~~A~ 220 (876)
...+.++|||+|||+++++++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.+++ ..+.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 45678999999999999999999999999999999953 3589999999999999999998864 68999999999998
Q ss_pred CCCCCC
Q 002823 221 PKDNPS 226 (876)
Q Consensus 221 pk~~~~ 226 (876)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 876544
No 50
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=132.04 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
....+.++|||+|||.++++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|++..|.|++|+|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3556789999999999999999999999999999988 44567899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002823 220 IPKDNP 225 (876)
Q Consensus 220 ~pk~~~ 225 (876)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=1.1e-14 Score=130.45 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
|+++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999983 46789999999999999999999999999999999999998
Q ss_pred CCCC
Q 002823 221 PKDN 224 (876)
Q Consensus 221 pk~~ 224 (876)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 52
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=8.2e-15 Score=128.27 Aligned_cols=78 Identities=14% Similarity=0.322 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999883 5678999999999999999999999999999999999999
Q ss_pred CCC
Q 002823 220 IPK 222 (876)
Q Consensus 220 ~pk 222 (876)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 53
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=131.54 Aligned_cols=83 Identities=18% Similarity=0.368 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567899999999999999999999999999999882 56789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002823 218 YSIPKDNP 225 (876)
Q Consensus 218 ~A~pk~~~ 225 (876)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887654
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=129.18 Aligned_cols=85 Identities=15% Similarity=0.311 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~---tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
....+.++|||+|||+++++++|+++|++||.|..|+. ...++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35567899999999999999999999999999999983 234799999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002823 219 SIPKDNPS 226 (876)
Q Consensus 219 A~pk~~~~ 226 (876)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98876543
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=129.82 Aligned_cols=84 Identities=14% Similarity=0.356 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~---tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.+.++|||+|||+++++++|+++|++||.|..|+. ...++|||||+|.+.++|++|++.|++..+.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35577899999999999999999999999999999983 344789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9886544
No 56
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=136.90 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=77.3
Q ss_pred ccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccc--cccCCce
Q 002823 136 VAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGK 213 (876)
Q Consensus 136 ~~ge~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng--~~l~Gr~ 213 (876)
.+++......++++|||+|||+++++++|+++|++||.|.+|++. +.||||||+|.+.++|++|++.+++ ..+.|++
T Consensus 20 ~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 20 HMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp --CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 344445566789999999999999999999999999999999853 3589999999999999999999885 5799999
Q ss_pred eeEeecCCCCCCC
Q 002823 214 LDIHYSIPKDNPS 226 (876)
Q Consensus 214 L~V~~A~pk~~~~ 226 (876)
|+|.|+.++....
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998876554
No 57
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=133.68 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=69.9
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcC-CeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhC-CceeCCeEEEEEee
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELN-SRYIAGKQIKLEPS 304 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG-~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~Ln-G~~I~Gr~IkVs~A 304 (876)
+++|||+|||.++|+++|+++|++|| +|++|++ ++.++|||||+|.+.++|++|++.++ +..+.|++|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999887 46788999999999999999999875 56899999999999
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8864
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=125.60 Aligned_cols=77 Identities=18% Similarity=0.409 Sum_probs=70.0
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
+..+|||+|||.++++++|+++|++||.|.+|++ ++..+|||||+|.+.++|++|++.|||..+.|++|+|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4569999999999999999999999999999887 44568999999999999999999999999999999999998
Q ss_pred Cc
Q 002823 306 LR 307 (876)
Q Consensus 306 ~k 307 (876)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=128.22 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4466799999999999999999999999999999983 36789999999999999999999999999999999999
Q ss_pred ecC
Q 002823 218 YSI 220 (876)
Q Consensus 218 ~A~ 220 (876)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 60
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-14 Score=127.78 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccC--CceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~--Gr~L~V~~A~ 220 (876)
...++++|||+|||.++++++|+++|++||+|..|+... .+|||||+|.+.++|++|++.|++..+. |++|+|.|+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 346679999999999999999999999999999998643 4899999999999999999999999999 9999999998
Q ss_pred CCCC
Q 002823 221 PKDN 224 (876)
Q Consensus 221 pk~~ 224 (876)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-14 Score=130.56 Aligned_cols=85 Identities=15% Similarity=0.344 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHcc------ccccC
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQ------NKLTR 210 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Ln------g~~l~ 210 (876)
....+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 35567899999999999999999999999999999983 46789999999999999999999999 99999
Q ss_pred CceeeEeecCCCCCCC
Q 002823 211 SGKLDIHYSIPKDNPS 226 (876)
Q Consensus 211 Gr~L~V~~A~pk~~~~ 226 (876)
|+.|+|.|+.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999998876543
No 62
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=2.7e-14 Score=129.62 Aligned_cols=83 Identities=14% Similarity=0.279 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCC---ceee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRS---GKLD 215 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G---r~L~ 215 (876)
...+.++|||+|||.++++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|++..+.| ++|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345689999999999999999999999999999988 346679999999999999999999999999998 9999
Q ss_pred EeecCCCCCC
Q 002823 216 IHYSIPKDNP 225 (876)
Q Consensus 216 V~~A~pk~~~ 225 (876)
|.|+.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887654
No 63
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=2.2e-14 Score=124.47 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=71.0
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
.+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999887 3556899999999999999999999999999999999999986
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 64
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=130.44 Aligned_cols=83 Identities=18% Similarity=0.323 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 457799999999999999999999999999999983 466899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002823 219 SIPKDNPS 226 (876)
Q Consensus 219 A~pk~~~~ 226 (876)
+.++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=131.79 Aligned_cols=82 Identities=12% Similarity=0.330 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....++++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34566789999999999999999999999999999983 4778999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002823 217 HYSIPKD 223 (876)
Q Consensus 217 ~~A~pk~ 223 (876)
.|+.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998764
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=129.03 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=73.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..+.|++|+|.|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999887 35567999999999999999999999999999999999999
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1.7e-14 Score=125.66 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45779999999999999999999999999999998 3566899999999999999999999999999999999999
Q ss_pred cC
Q 002823 219 SI 220 (876)
Q Consensus 219 A~ 220 (876)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 68
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=129.99 Aligned_cols=83 Identities=14% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999983 45689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002823 218 YSIPKDNP 225 (876)
Q Consensus 218 ~A~pk~~~ 225 (876)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99877654
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=128.14 Aligned_cols=79 Identities=13% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...++++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999983 46789999999999999999999999999999999999
Q ss_pred ecCC
Q 002823 218 YSIP 221 (876)
Q Consensus 218 ~A~p 221 (876)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 70
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=128.47 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=74.1
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34679999999999999999999999999999998 4557899999999999999999999999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 98754
No 71
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=130.30 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=72.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
...++|||+|||.++++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+|++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 45679999999999999999999999999999888 4456899999999999999999999999999999999999885
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 100 ~ 100 (109)
T 1x4a_A 100 R 100 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 72
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-14 Score=128.36 Aligned_cols=81 Identities=28% Similarity=0.359 Sum_probs=73.7
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit---g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...++|||+|||..+++++|+++|++||.|+.|++. ...++||||+|.+.++|++|++.|++..|.|++|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 456799999999999999999999999999999882 33679999999999999999999999999999999999998
Q ss_pred chhH
Q 002823 307 RGLR 310 (876)
Q Consensus 307 k~~R 310 (876)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2cqi_A 93 PSSQ 96 (103)
T ss_dssp TTCC
T ss_pred Cccc
Confidence 6543
No 73
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=128.88 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe--------CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~--------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
.+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 56789999999999999999999999999999882 3378999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002823 217 HYSIPKDNP 225 (876)
Q Consensus 217 ~~A~pk~~~ 225 (876)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999877654
No 74
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.9e-14 Score=130.85 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcc--ccccCCceeeEee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLDIHY 218 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Ln--g~~l~Gr~L~V~~ 218 (876)
+....|+++|||+|||+++++++|+++|++||.|..|+.. +.||||||+|.+.++|++|++.|+ +..+.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3455788999999999999999999999999999999853 359999999999999999999875 5679999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876544
No 75
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=129.43 Aligned_cols=82 Identities=15% Similarity=0.344 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEE-E-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTF-Y-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV-~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.++++|||+|||.++++++|+++|++||.|..+ + .+++++|||||+|.+.++|++|++.|++..+.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999877 5 3566899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002823 219 SIPKDNPS 226 (876)
Q Consensus 219 A~pk~~~~ 226 (876)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98876543
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=132.57 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....++++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 35567899999999999999999999999999999882 4678999999999999999999999999999999999
Q ss_pred eecCCCC
Q 002823 217 HYSIPKD 223 (876)
Q Consensus 217 ~~A~pk~ 223 (876)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 77
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.1e-14 Score=125.21 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=71.7
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45679999999999999999999999999999887 3567899999999999999999999999999999999998
Q ss_pred cC
Q 002823 305 HL 306 (876)
Q Consensus 305 ~~ 306 (876)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 78
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.8e-14 Score=137.43 Aligned_cols=83 Identities=16% Similarity=0.330 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+....++++|||+|||.++++++|+++|++||+|..|+. +++.+|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345677899999999999999999999999999999983 467899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 002823 216 IHYSIPKD 223 (876)
Q Consensus 216 V~~A~pk~ 223 (876)
|+|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=2.5e-14 Score=130.06 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHcccccc---CCce
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLT---RSGK 213 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l---~Gr~ 213 (876)
..+.+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 35667899999999999999999999999999999982 467899999999999999999999999987 8999
Q ss_pred eeEeecCCCCCC
Q 002823 214 LDIHYSIPKDNP 225 (876)
Q Consensus 214 L~V~~A~pk~~~ 225 (876)
|+|.|+.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999877543
No 80
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=132.83 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccc--cCCceeeEeec
Q 002823 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYS 219 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~-~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~--l~Gr~L~V~~A 219 (876)
...|+++|||+|||+ ++++++|+++|++||.|.+|++ .+.+|||||+|.+.++|++|++.|++.. |.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345789999999999 9999999999999999999996 3567999999999999999999999754 99999999999
Q ss_pred CCCCC
Q 002823 220 IPKDN 224 (876)
Q Consensus 220 ~pk~~ 224 (876)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 86543
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=3.3e-14 Score=123.86 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=70.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|.+|++.|||..+.|++|+|+|++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4679999999999999999999999999999887 34578999999999999999999999999999999999985
No 82
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=131.91 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=71.5
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCce--eCCeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY--IAGKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~--I~Gr~IkVs~A~~k 307 (876)
.+.++|||+|||.++++++|+++|++||.|++|++. +.||+|||+|.+.++|.+|++.|++.. +.|++|+|+|++.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 357799999999999999999999999999999984 468999999999999999999999875 78999999999875
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
+
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 83
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-14 Score=131.27 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
..+.+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.+++ .+.|++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 35677899999999999999999999999999999983 467899999999999999999999998 899999999
Q ss_pred eecCCCCCC
Q 002823 217 HYSIPKDNP 225 (876)
Q Consensus 217 ~~A~pk~~~ 225 (876)
+++.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999776544
No 84
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=126.17 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 140 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 140 ~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+....+.++|||+|||.++++++|+++|++||.|..++.. ++||||+|.+.++|++|++.|++..+.|++|+|+++
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34456778999999999999999999999999999999873 569999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002823 220 IPKDNP 225 (876)
Q Consensus 220 ~pk~~~ 225 (876)
.++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 887654
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=128.58 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
+..+.+.++|||+|||+++++++|+++|++||+|..|+. .++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345667899999999999999999999999999999882 3667999999999999999999999999999999999
Q ss_pred eecC
Q 002823 217 HYSI 220 (876)
Q Consensus 217 ~~A~ 220 (876)
+|+.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9975
No 86
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=135.07 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccc--cccCCceeeEeec
Q 002823 143 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKLDIHYS 219 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~-vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng--~~l~Gr~L~V~~A 219 (876)
...|+++|||+|||++ +++++|+++|++||+|.+|++ .+.||||||+|.+.++|++|++.|++ ..+.|++|+|.|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 4678999999999998 999999999999999999996 46799999999999999999999875 4599999999999
Q ss_pred CCCCCC
Q 002823 220 IPKDNP 225 (876)
Q Consensus 220 ~pk~~~ 225 (876)
.++...
T Consensus 100 ~~~~~~ 105 (112)
T 1x4f_A 100 EKYKKL 105 (112)
T ss_dssp CSCSSS
T ss_pred cccccc
Confidence 876543
No 87
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=2.4e-14 Score=132.41 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=73.6
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||.|++|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35679999999999999999999999999999887 4566799999999999999999999999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 98653
No 88
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=129.62 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=74.9
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
....++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 345679999999999999999999999999999887 34678999999999999999999999999999999999999
Q ss_pred CchhH
Q 002823 306 LRGLR 310 (876)
Q Consensus 306 ~k~~R 310 (876)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87644
No 89
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=4e-14 Score=126.84 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=73.4
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.++|||+|||..+++++|+++|++||.|.+|++ ++..+|||||+|.+.++|.+|++.|+|..+.|++|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 568999999999999999999999999999988 355689999999999999999999999999999999999998
Q ss_pred chhH
Q 002823 307 RGLR 310 (876)
Q Consensus 307 k~~R 310 (876)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7644
No 90
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=125.40 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 223 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~ 223 (876)
..+.++|||+|||.++++++|+++|++||+|..++.. +|||||+|.+.++|++|++.|++..+.|++|+|+|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4567999999999999999999999999999999874 8999999999999999999999999999999999998876
Q ss_pred CC
Q 002823 224 NP 225 (876)
Q Consensus 224 ~~ 225 (876)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=3.5e-14 Score=131.74 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+....+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345667899999999999999999999999999999983 467899999999999999999999999999999999
Q ss_pred EeecC
Q 002823 216 IHYSI 220 (876)
Q Consensus 216 V~~A~ 220 (876)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99873
No 92
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=128.35 Aligned_cols=83 Identities=13% Similarity=0.248 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----C-CCccceEeeecCCHHHHHHHHHHccccccCCcee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----A-SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----t-gksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L 214 (876)
+....+.++|||+|||.++++++|+++|++|| |..|+. + ++++|||||+|.+.++|++|+ .|++..+.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34556789999999999999999999999999 999983 2 778999999999999999999 999999999999
Q ss_pred eEeecCCCCCC
Q 002823 215 DIHYSIPKDNP 225 (876)
Q Consensus 215 ~V~~A~pk~~~ 225 (876)
+|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 93
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=3.6e-14 Score=130.06 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=74.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+|++.|+|..|.|++|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999988 3456899999999999999999999999999999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 887654
No 94
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.2e-14 Score=129.21 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=73.5
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45679999999999999999999999999999988 4557899999999999999999999999999999999999
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
+++.
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8865
No 95
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=2.9e-14 Score=130.69 Aligned_cols=83 Identities=14% Similarity=0.300 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....++++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566799999999999999999999999999999983 4678999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002823 217 HYSIPKDN 224 (876)
Q Consensus 217 ~~A~pk~~ 224 (876)
.|+.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987643
No 96
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.3e-14 Score=128.58 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=73.8
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec------CCcccEEEEEecCHHHHHHHHHHh-CCceeCCeEEEE
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKL 301 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit------g~skG~AFVeF~d~E~A~kAL~~L-nG~~I~Gr~IkV 301 (876)
.....+|||+|||..+++++|+++|++||.|..|++. +..++||||+|.+.++|++|++.| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 3456799999999999999999999999999999883 335899999999999999999999 999999999999
Q ss_pred EeecCchh
Q 002823 302 EPSHLRGL 309 (876)
Q Consensus 302 s~A~~k~~ 309 (876)
+|++++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99998653
No 97
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=9.7e-15 Score=165.99 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=103.9
Q ss_pred HHHHhhccCCeEEEEe-------CCCccceE-----eeecCCHHHHHHHHHHccccccCCc-----------e--eeEee
Q 002823 164 LKALFEQYGDVRTFYR-------ASKHCGFV-----TISYYDIRAARNAMKSLQNKLTRSG-----------K--LDIHY 218 (876)
Q Consensus 164 L~elFsqfG~I~sV~~-------tgksrGfA-----FV~F~d~edA~kAl~~Lng~~l~Gr-----------~--L~V~~ 218 (876)
|.++|.++|+|..|.. ..+..+|+ |+.|....++..++..++......+ . ..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999988731 11233444 7788776555444433222211111 0 01111
Q ss_pred cCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 219 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 219 A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
..+............+|||+|||..+|+++|+++|++||.|+.|++ ++..+|||||+|.+.++|.+||..|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222222334579999999999999999999999999999887 45678999999999999999999999999
Q ss_pred eCCeEEEEEeecCch
Q 002823 294 IAGKQIKLEPSHLRG 308 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~ 308 (876)
|.|++|+|.|+.++.
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 98
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.2e-14 Score=124.20 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=70.5
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45679999999999999999999999999999988 2456799999999999999999999999999999999998
Q ss_pred c
Q 002823 305 H 305 (876)
Q Consensus 305 ~ 305 (876)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 99
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=128.66 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccc-cCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQ-YGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKL-TRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsq-fG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~-l~Gr~L~V 216 (876)
...+.++|||+|||+++++++|+++|++ ||.|..|+. +++++|||||+|.+.++|++|++.|++.. +.|++|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4567899999999999999999999999 999999883 56789999999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q 002823 217 HYSIPKDNP 225 (876)
Q Consensus 217 ~~A~pk~~~ 225 (876)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877654
No 100
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=128.21 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
.+.+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|++..+.|++|+|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45678999999999999999999999999999888778889999999999999999999999999999999999999876
Q ss_pred CC
Q 002823 223 DN 224 (876)
Q Consensus 223 ~~ 224 (876)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=127.50 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.++|||+|||+++++++|+++|++||+|..|+. .+.+|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3466789999999999999999999999999999986 356899999999999999999999999999999999999876
Q ss_pred CC
Q 002823 223 DN 224 (876)
Q Consensus 223 ~~ 224 (876)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 102
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=126.30 Aligned_cols=78 Identities=28% Similarity=0.376 Sum_probs=72.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4579999999999999999999999999999888 35568999999999999999999999999999999999998
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
++.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 103
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=5.9e-14 Score=129.63 Aligned_cols=81 Identities=19% Similarity=0.404 Sum_probs=74.0
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|+|..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35679999999999999999999999999999887 4456899999999999999999999999999999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
+++..+
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 986543
No 104
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=128.11 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
...+.++|||+|||.++++++|+++|++||.|.-++ .+++.+|||||+|.+.++|++|++.|++..+.|+.|+|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 456789999999999999999999999999995554 4678899999999999999999999999999999999999988
Q ss_pred CCCC
Q 002823 222 KDNP 225 (876)
Q Consensus 222 k~~~ 225 (876)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 105
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=127.99 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=73.7
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45679999999999999999999999999999887 4566899999999999999999999999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88653
No 106
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=129.70 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....+.++|||+|||+++++++|+++|++||+|..|+ .+++++|||||+|.+.++|++|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3566789999999999999999999999999999988 2567899999999999999999998 999999999999
Q ss_pred eecCCCCCCC
Q 002823 217 HYSIPKDNPS 226 (876)
Q Consensus 217 ~~A~pk~~~~ 226 (876)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998876543
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=123.39 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHc-cccccCCceeeEeecC
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKLDIHYSI 220 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~L-ng~~l~Gr~L~V~~A~ 220 (876)
..+.+.++|||+|||.++++++|+++|++||.|..++.. +++|||||+|.+.++|++|++.| ++..+.|++|+|+|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 355678999999999999999999999999999999863 46899999999999999999999 9999999999999974
No 108
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=4.6e-14 Score=128.14 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=73.7
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC---eEEEEE
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG---KQIKLE 302 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G---r~IkVs 302 (876)
...++|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35679999999999999999999999999999887 34458999999999999999999999999998 999999
Q ss_pred eecCchhH
Q 002823 303 PSHLRGLR 310 (876)
Q Consensus 303 ~A~~k~~R 310 (876)
|++++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99987644
No 109
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=129.01 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=73.0
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35679999999999999999999999999999887 3566899999999999999999999999999999999999
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 110
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.51 E-value=1.2e-14 Score=129.08 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccC--CeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYG--DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG--~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
.+|||+|||+++++++|+++|++|| .|.+++ .+++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 888887 367899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 002823 221 PKDNP 225 (876)
Q Consensus 221 pk~~~ 225 (876)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 111
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=124.16 Aligned_cols=77 Identities=27% Similarity=0.424 Sum_probs=71.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec-----CC-cccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQ-KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit-----g~-skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
.++|||+|||.++++++|+++|++||.|..|++. +. .+|||||+|.+.++|.+|++.|||..+.|++|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999999998872 12 78999999999999999999999999999999999998
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 112
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=128.38 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=74.4
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec-----CCcccEEEEEecCHHHHHHHHHHhC------CceeCCeE
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELN------SRYIAGKQ 298 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit-----g~skG~AFVeF~d~E~A~kAL~~Ln------G~~I~Gr~ 298 (876)
...++|||+|||.++++++|+++|++||.|..|++. +..++||||+|.+.++|.+|++.|+ +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356799999999999999999999999999999883 4678999999999999999999999 99999999
Q ss_pred EEEEeecCchhH
Q 002823 299 IKLEPSHLRGLR 310 (876)
Q Consensus 299 IkVs~A~~k~~R 310 (876)
|+|.|++++..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999987543
No 113
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=133.10 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=71.7
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEeecCch
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG--~~I~Gr~IkVs~A~~k~ 308 (876)
...+|||+|||+++++++|+++|++||+|++|++.. .||||||+|.+.++|++|++.|++ ..|.|++|+|.|++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 467999999999999999999999999999999843 489999999999999999999864 78999999999998865
Q ss_pred hH
Q 002823 309 LR 310 (876)
Q Consensus 309 ~R 310 (876)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 114
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=135.08 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~----elFsqfG~I~sV~~--tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
...++++|||+|||+.+++++|+ ++|++||+|.+|.. +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 45678999999999999999876 69999999999884 5688999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002823 217 HYSIPKDN 224 (876)
Q Consensus 217 ~~A~pk~~ 224 (876)
.|+.++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 115
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.9e-14 Score=125.69 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=73.3
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit---g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
....++|||+|||.++++++|+++|++||.|..|++. ...++||||+|.+.++|++|++.|++..|.|++|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 3456799999999999999999999999999999883 2358999999999999999999999999999999999999
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
++.
T Consensus 92 ~~~ 94 (103)
T 2cq3_A 92 ARV 94 (103)
T ss_dssp SSC
T ss_pred cCC
Confidence 865
No 116
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=130.76 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=68.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCC--eEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCc----eeCCeEEE
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGE--IKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSR----YIAGKQIK 300 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~--I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~----~I~Gr~Ik 300 (876)
-.+|||+|||+++|+++|+++|++||. |.+|++ ++.+||||||+|.+.++|++|++.|||. .|.||+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 458999999999999999999999995 567776 4677899999999999999999999996 58999999
Q ss_pred EEeecC
Q 002823 301 LEPSHL 306 (876)
Q Consensus 301 Vs~A~~ 306 (876)
|+|++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 117
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=127.22 Aligned_cols=80 Identities=10% Similarity=0.288 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE-EEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCce----
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVR-TFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK---- 213 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~-sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~---- 213 (876)
..++++|||+|||+++++++|+++|++||+|. .++ .+++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999998 887 25678999999999999999999999999999999
Q ss_pred eeEeecCCCC
Q 002823 214 LDIHYSIPKD 223 (876)
Q Consensus 214 L~V~~A~pk~ 223 (876)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998754
No 118
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=129.27 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=73.6
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35679999999999999999999999999999988 3457899999999999999999999999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98653
No 119
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=2.5e-14 Score=127.84 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEe--CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~----elFsqfG~I~sV~~--tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
+..++++|||+|||.++++++|+ ++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45678999999999999999999 99999999999984 3568899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002823 217 HYSIPKDN 224 (876)
Q Consensus 217 ~~A~pk~~ 224 (876)
.|+.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987653
No 120
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=6.4e-14 Score=127.09 Aligned_cols=83 Identities=14% Similarity=0.298 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+....+.++|||+|||.++++++|+++|++|| |..|+. +++++|||||+|.+.++|++|+ .|++..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34556789999999999999999999999997 988872 4778999999999999999999 8999999999999
Q ss_pred EeecCCCCCC
Q 002823 216 IHYSIPKDNP 225 (876)
Q Consensus 216 V~~A~pk~~~ 225 (876)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999887654
No 121
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=4.8e-14 Score=123.47 Aligned_cols=78 Identities=10% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+++|||+|||.++++++|+++|++||.|..++. .++.+|||||+|.+.++|++|++.|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999983 1238999999999999999999999999999999999999
Q ss_pred CCCC
Q 002823 220 IPKD 223 (876)
Q Consensus 220 ~pk~ 223 (876)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 122
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=128.98 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=73.0
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+|++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4679999999999999999999999999999988 33468999999999999999999999999999999999998
Q ss_pred Cchh
Q 002823 306 LRGL 309 (876)
Q Consensus 306 ~k~~ 309 (876)
++..
T Consensus 91 ~~~~ 94 (102)
T 1x5s_A 91 KSSD 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=126.24 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
....+++|||+|||+++++++|+++|++||.|.....+++++|||||+|.+.++|++|++.|++..+.|++|+|.++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34557899999999999999999999999999633355788999999999999999999999999999999999999876
Q ss_pred C
Q 002823 223 D 223 (876)
Q Consensus 223 ~ 223 (876)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=3.4e-14 Score=130.59 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=81.6
Q ss_pred CCceeeEeecCCCCCCCccccccceeEeecCCCC-CcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHH
Q 002823 210 RSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRE 288 (876)
Q Consensus 210 ~Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~s-vTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~ 288 (876)
.|.+|.|..+.+..... .....++|||+|||.. +++++|+++|++||.|..|++ .++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~~-~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND-PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSCC-CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCCC-CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 46677777665543332 2234579999999999 999999999999999999998 789999999999999999999
Q ss_pred hCCceeCCeEEEEEeecCch
Q 002823 289 LNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 289 LnG~~I~Gr~IkVs~A~~k~ 308 (876)
|++..|.|++|+|+|++++.
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998643
No 125
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=6.3e-14 Score=133.71 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.+.+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999883 46789999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002823 218 YSIPKDNP 225 (876)
Q Consensus 218 ~A~pk~~~ 225 (876)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887654
No 126
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=5.8e-14 Score=131.10 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
+..+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999883 567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 127
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5e-14 Score=129.75 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEE-----eCCCccceEeeecCCHHHHHHHHHHcccccc
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVR--------TFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLT 209 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~--------sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l 209 (876)
.+.+.++|||+|||.++++++|+++|++||.|. .|+ .+++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 556789999999999999999999999999998 466 3467899999999999999999999999999
Q ss_pred CCceeeEeecCCCCCC
Q 002823 210 RSGKLDIHYSIPKDNP 225 (876)
Q Consensus 210 ~Gr~L~V~~A~pk~~~ 225 (876)
.|++|+|.++.++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887654
No 128
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.6e-14 Score=126.41 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=72.7
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++ |++..|.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999988 34578999999999999999998 9999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 98653
No 129
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=5.2e-14 Score=126.83 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EE-----eCCCccceEeeecCCHHHHHHHHHHccccc
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------FY-----RASKHCGFVTISYYDIRAARNAMKSLQNKL 208 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~s--------V~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~ 208 (876)
....+.++|||+|||.++++++|+++|++||.|.. ++ .+++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999988 66 246789999999999999999999999999
Q ss_pred cCCceeeEeecC
Q 002823 209 TRSGKLDIHYSI 220 (876)
Q Consensus 209 l~Gr~L~V~~A~ 220 (876)
+.|++|+|+++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 130
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.5e-14 Score=127.00 Aligned_cols=83 Identities=18% Similarity=0.357 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
...+.++|||+|||.++++++|+++|++|+.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 456789999999999999999999999998887776 467889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002823 221 PKDNP 225 (876)
Q Consensus 221 pk~~~ 225 (876)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=9.7e-14 Score=127.54 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 143 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~-vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
...+.++|||+|||++ +++++|+++|++||+|..|+. .+|||||+|.+.++|++|++.|++..+.|++|+|.|+.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4456689999999999 999999999999999999988 789999999999999999999999999999999999975
Q ss_pred CCC
Q 002823 222 KDN 224 (876)
Q Consensus 222 k~~ 224 (876)
+..
T Consensus 100 ~~~ 102 (110)
T 1wf1_A 100 PKP 102 (110)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 132
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.2e-14 Score=127.98 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...++++|||+|||.++++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|++..+.|++|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 456689999999999999999999999999999887 2466799999999999999999999999999999999999
Q ss_pred cCCCC
Q 002823 219 SIPKD 223 (876)
Q Consensus 219 A~pk~ 223 (876)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 133
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=7.7e-14 Score=124.22 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=71.1
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...++|||+|||..+++++|+++|++||+|..|++ .+..++||||+|.+.++|++|++.||+..+.|++|+|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35679999999999999999999999999999887 34458999999999999999999999999999999999987
Q ss_pred C
Q 002823 306 L 306 (876)
Q Consensus 306 ~ 306 (876)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7.7e-14 Score=125.24 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=72.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA--GKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~--Gr~IkVs~A~~k 307 (876)
.+.++|||+|||.++++++|+++|++||.|+.|++.. .++||||+|.+.++|++|++.||+..+. |++|+|+|++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 3467999999999999999999999999999999843 4899999999999999999999999999 999999999986
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 94 ~ 94 (97)
T 1why_A 94 P 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.8e-14 Score=130.67 Aligned_cols=80 Identities=16% Similarity=0.350 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe---CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~---tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
...+.++|||+|||.++++++|+++|++||+|..++. .++++|||||+|.+.++|++|++.|+|..+.|++|+|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999999998883 3457999999999999999999999999999999999999
Q ss_pred CCC
Q 002823 220 IPK 222 (876)
Q Consensus 220 ~pk 222 (876)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 136
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.2e-14 Score=129.83 Aligned_cols=84 Identities=18% Similarity=0.308 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE-eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDV----RTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I----~sV~-~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...++++|||+|||.++++++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999999999988 4444 578899999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 002823 218 YSIPKDNPS 226 (876)
Q Consensus 218 ~A~pk~~~~ 226 (876)
|+.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 137
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.2e-14 Score=125.66 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=71.5
Q ss_pred ccceeEeecCCCCCcHHHHH----HHhhhcCCeEEEEec--CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 231 NQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRET--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLr----eiFs~fG~I~sVrit--g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...+|||+|||.++++++|+ ++|++||+|++|++. ...++||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45689999999999999999 999999999999983 223899999999999999999999999999999999999
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
+++.
T Consensus 88 ~~~~ 91 (96)
T 2dgx_A 88 TGAS 91 (96)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
No 138
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-14 Score=130.64 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.+.+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999988872 56789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002823 218 YSIPKDN 224 (876)
Q Consensus 218 ~A~pk~~ 224 (876)
|+.++..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9987653
No 139
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.49 E-value=6.3e-14 Score=133.70 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=74.5
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
....++|||+|||.++++++|+++|+.||+|++|++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999887 345689999999999999999999999999999999999
Q ss_pred ecCchhH
Q 002823 304 SHLRGLR 310 (876)
Q Consensus 304 A~~k~~R 310 (876)
++++..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 140
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=6.6e-14 Score=131.35 Aligned_cols=84 Identities=13% Similarity=0.349 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 142 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 142 ~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....+.++|||+|||.++++++|+++|++||.|..|.. +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34566789999999999999999999999999999983 6778999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 002823 217 HYSIPKDNP 225 (876)
Q Consensus 217 ~~A~pk~~~ 225 (876)
.|+.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876544
No 141
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=126.76 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.5
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEE-Ee-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEI-RE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sV-ri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
..++|||+|||.++++++|+++|++||.|..| ++ ++..++||||+|.+.++|++|++.|||..+.|++|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999888 77 3446899999999999999999999999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88653
No 142
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9e-14 Score=127.61 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=71.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHh--CCceeCCeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALREL--NSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~L--nG~~I~Gr~IkVs~A~~k 307 (876)
.+.++|||+|||.++++++|+++|++||.|++|++.. .||||||+|.+.++|.+|++.| ++..+.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 4567999999999999999999999999999998843 4899999999999999999987 568899999999999986
Q ss_pred hhH
Q 002823 308 GLR 310 (876)
Q Consensus 308 ~~R 310 (876)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 533
No 143
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.9e-14 Score=127.70 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=73.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34679999999999999999999999999999988 3567899999999999999999999999999999999999
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8754
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=130.31 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=73.6
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec-----CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit-----g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|+.||.|..|++. +..+|||||+|.+.++|++|+ .|||..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 356699999999999999999999999999999983 567899999999999999999 99999999999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 887654
No 145
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=2.8e-14 Score=129.54 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC--eEEEE-----eCCCccceEeeecCCHHHHHHHHHHcccc----ccCCc
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGD--VRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNK----LTRSG 212 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~--I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~----~l~Gr 212 (876)
+..=.||||+|||+++|+++|+++|++||. |.+|+ .++++||||||+|.+.++|++|++.|++. .+.||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344579999999999999999999999995 55666 46889999999999999999999999997 48999
Q ss_pred eeeEeecCC
Q 002823 213 KLDIHYSIP 221 (876)
Q Consensus 213 ~L~V~~A~p 221 (876)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.1e-14 Score=127.77 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
....++|||+|||.++++++|+++|++||.|..++.. +++|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 3456899999999999999999999999999999863 78999999999999999999999999999999999998764
No 147
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=126.57 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=71.8
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec------C--CcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------P--QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit------g--~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs 302 (876)
..++|||+|||.++++++|+++|++||.|..|++. + ..++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999999998872 1 567999999999999999999999999999999999
Q ss_pred eecCch
Q 002823 303 PSHLRG 308 (876)
Q Consensus 303 ~A~~k~ 308 (876)
+++++.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 998864
No 148
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=126.39 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCC-----ceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-----GKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G-----r~L~V~ 217 (876)
.....++|||+|||+++++++|+++|++||+|..|++... |||||+|.+.++|++|++.|+++.|.| ++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999986333 999999999999999999999999999 999999
Q ss_pred ecCCCCCC
Q 002823 218 YSIPKDNP 225 (876)
Q Consensus 218 ~A~pk~~~ 225 (876)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99887654
No 149
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=1.5e-14 Score=131.34 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCC------CCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCC-
Q 002823 144 EHPSRTLLLRKINS------NIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRS- 211 (876)
Q Consensus 144 e~pSrTLFVgNLP~------~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G- 211 (876)
+..+++|||+|||. ++++++|+++|++||.|.+|+ .+++++|||||+|.+.++|++|++.|+|..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 999999999999999999998 248899999999999999999999999999999
Q ss_pred ceeeEeecCCC
Q 002823 212 GKLDIHYSIPK 222 (876)
Q Consensus 212 r~L~V~~A~pk 222 (876)
+.|+|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998764
No 150
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=1.1e-13 Score=125.70 Aligned_cols=81 Identities=17% Similarity=0.363 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.++|||+|||+++++++|+++|++||.|..|+.. ++||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34567999999999999999999999999999999863 779999999999999999999999999999999999887
Q ss_pred CCCC
Q 002823 223 DNPS 226 (876)
Q Consensus 223 ~~~~ 226 (876)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 151
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.4e-14 Score=124.05 Aligned_cols=76 Identities=25% Similarity=0.376 Sum_probs=71.7
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
...++|||+|||.++++++|+++|++||.|+.|++. ++||||+|.+.++|++|++.||+..+.|++|+|+|++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 346799999999999999999999999999999984 8999999999999999999999999999999999998865
No 152
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=6.3e-14 Score=127.46 Aligned_cols=81 Identities=15% Similarity=0.292 Sum_probs=73.7
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCcee---CCeEEE
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYI---AGKQIK 300 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I---~Gr~Ik 300 (876)
.....+|||+|||.++++++|+++|++||.|.+|++ ++..++||||+|.+.++|.+|++.||+..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345679999999999999999999999999999988 355789999999999999999999999998 899999
Q ss_pred EEeecCchh
Q 002823 301 LEPSHLRGL 309 (876)
Q Consensus 301 Vs~A~~k~~ 309 (876)
|.+++++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999998653
No 153
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.49 E-value=3.2e-14 Score=136.56 Aligned_cols=88 Identities=20% Similarity=0.363 Sum_probs=78.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCce
Q 002823 139 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (876)
Q Consensus 139 e~p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~ 213 (876)
..+....+.++|||+|||+++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..|.|++
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34455667899999999999999999999999999999983 5778999999999999999999999999999999
Q ss_pred eeEeecCCCCCCC
Q 002823 214 LDIHYSIPKDNPS 226 (876)
Q Consensus 214 L~V~~A~pk~~~~ 226 (876)
|+|.|+.++....
T Consensus 119 l~V~~a~~~~~~~ 131 (135)
T 2lea_A 119 LRVQMARYGRPPD 131 (135)
T ss_dssp CEEEECCCCCCCT
T ss_pred EEEEECCCCCCCc
Confidence 9999998765543
No 154
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.49 E-value=4.4e-14 Score=126.97 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+.-|||+||++.+|+++|+++|.+||+|.+++. ..+||||||+|.++++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999996 458999999999999999999999999999999999987
No 155
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=121.40 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=70.0
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~L-nG~~I~Gr~IkVs~A~ 305 (876)
...++|||+|||..+++++|+++|++||.|..|++. ..++||||+|.+.++|.+|++.| ++..+.|++|+|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456799999999999999999999999999999984 46899999999999999999999 9999999999999985
No 156
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=5e-14 Score=124.70 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=72.6
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
...+|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|++..+.|++|+|++++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4679999999999999999999999999999887 4557899999999999999999999999999999999999886
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 87 ~ 87 (92)
T 2dgv_A 87 S 87 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 157
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-14 Score=129.74 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=69.8
Q ss_pred ccceeEeecCCC-CCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEeecCc
Q 002823 231 NQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLR 307 (876)
Q Consensus 231 ~~~tLfV~NLP~-svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG--~~I~Gr~IkVs~A~~k 307 (876)
+..+|||+|||. ++++++|+++|++||+|.+|++. ..++||||+|.+.++|.+|++.|++ ..|.|++|+|.|++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 567999999999 99999999999999999999984 4579999999999999999999986 4599999999999864
No 158
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=123.26 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=71.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 456799999999999999999999999999999984 6699999999999999999999999999999999998864
No 159
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=122.69 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.++|||+|||.++++++|+++|++||.|..++.. ++||||+|.+.++|++|++.|++..+.|++|+|.++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34667999999999999999999999999999999973 569999999999999999999999999999999999877
Q ss_pred CCC
Q 002823 223 DNP 225 (876)
Q Consensus 223 ~~~ 225 (876)
...
T Consensus 82 ~~~ 84 (90)
T 2dnp_A 82 QKK 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 160
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=7.2e-14 Score=127.29 Aligned_cols=78 Identities=17% Similarity=0.341 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...+.++|||+|||+++++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|++..+.|++|+|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999999999987 3567899999999999999999999999999999999999
Q ss_pred cC
Q 002823 219 SI 220 (876)
Q Consensus 219 A~ 220 (876)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 161
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.1e-14 Score=128.08 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=76.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..+.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34679999999999999999999999999999887 3456899999999999999999999999999999999999
Q ss_pred cCchhHHHH
Q 002823 305 HLRGLRKCL 313 (876)
Q Consensus 305 ~~k~~Rr~l 313 (876)
.++..++..
T Consensus 86 ~~~~~~~~~ 94 (104)
T 1p1t_A 86 ASEKNKEEL 94 (104)
T ss_dssp TCTTHHHHH
T ss_pred CCccchhhh
Confidence 998766533
No 162
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-13 Score=123.22 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqf--G~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
...+.++|||+|||+++++++|+++|++| |.|..++. .+|||||+|.+.++|++|++.|++..+.|++|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44667999999999999999999999999 99999876 47899999999999999999999999999999999998
Q ss_pred CCCCC
Q 002823 221 PKDNP 225 (876)
Q Consensus 221 pk~~~ 225 (876)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2cpd_A 88 PVDKD 92 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 163
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=125.92 Aligned_cols=80 Identities=28% Similarity=0.327 Sum_probs=74.5
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchh
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~ 309 (876)
....+|||+|||..+++++|+++|++||.|..+..++..+|||||+|.+.++|.+|++.|+|..+.|++|+|.+++++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 45679999999999999999999999999988866788899999999999999999999999999999999999988653
No 164
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=128.68 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=72.7
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit---g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
....++|||+|||.++++++|+++|++||+|..|++. ...+|||||+|.+.++|++|++.|+|..+.|++|+|++++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3456799999999999999999999999999999883 3458999999999999999999999999999999999998
Q ss_pred Cc
Q 002823 306 LR 307 (876)
Q Consensus 306 ~k 307 (876)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 165
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.48 E-value=8.1e-14 Score=128.52 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=73.3
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
....++|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|+|..|.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999887 345689999999999999999999999999999999999
Q ss_pred ecCch
Q 002823 304 SHLRG 308 (876)
Q Consensus 304 A~~k~ 308 (876)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98864
No 166
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.6e-14 Score=129.59 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=70.7
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCc--eeCCeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR--YIAGKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~--~I~Gr~IkVs~A~~k 307 (876)
.+.++|||+|||.++++++|+++|++||.|.+|++.. .|+||||+|.+.++|.+|++.|++. .|.|++|+|.|++.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 3567999999999999999999999999999999843 5899999999999999999998764 599999999999876
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 5
No 167
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.6e-14 Score=125.02 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeCCCccceEeeecCCHHHHHHHHHHccc-cccCCceeeEeecCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGD-VRTFYRASKHCGFVTISYYDIRAARNAMKSLQN-KLTRSGKLDIHYSIP 221 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~-I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng-~~l~Gr~L~V~~A~p 221 (876)
..+.++|||+|||.++++++|+++|++||. |..+.. .++|||||+|.+.++|++|++.|++ ..+.|++|+|.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 356789999999999999999999999999 665554 4689999999999999999999999 999999999999988
Q ss_pred CCCCC
Q 002823 222 KDNPS 226 (876)
Q Consensus 222 k~~~~ 226 (876)
+....
T Consensus 83 ~~~~~ 87 (93)
T 2cqh_A 83 KKLRS 87 (93)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 76543
No 168
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.2e-14 Score=127.40 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=66.0
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcC--CeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG--~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
.+|||+|||.++++++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 8988876 56778999999999999999999999999999999999998
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 864
No 169
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=9.7e-14 Score=128.78 Aligned_cols=76 Identities=16% Similarity=0.334 Sum_probs=69.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||+|++|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 35679999999999999999999999999999988 3456899999999999999999999999999999999997
Q ss_pred c
Q 002823 305 H 305 (876)
Q Consensus 305 ~ 305 (876)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 5
No 170
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-13 Score=123.51 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=71.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhc--CCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~f--G~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
...++|||+|||..+++++|+++|++| |.|..|++ .++||||+|.+.++|.+|++.|||..|.|++|+|.|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 456799999999999999999999999 99999987 4789999999999999999999999999999999999886
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 90 ~ 90 (99)
T 2cpd_A 90 D 90 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 171
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=7.5e-14 Score=128.89 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=72.8
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
....++|||+|||.++++++|+++|++||.|+.|++. +|||||+|.+.++|++|++.|||..+.|++|+|+|++++.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 4467799999999999999999999999999999985 8999999999999999999999999999999999999876
Q ss_pred hH
Q 002823 309 LR 310 (876)
Q Consensus 309 ~R 310 (876)
.|
T Consensus 105 ~r 106 (108)
T 2jvo_A 105 KR 106 (108)
T ss_dssp --
T ss_pred CC
Confidence 44
No 172
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-13 Score=126.17 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHcccccc--------C
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLT--------R 210 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l--------~ 210 (876)
.+.+.++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4566799999999999999999999999999999883 567899999999999999999999999998 5
Q ss_pred CceeeEeecCCC
Q 002823 211 SGKLDIHYSIPK 222 (876)
Q Consensus 211 Gr~L~V~~A~pk 222 (876)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998764
No 173
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.7e-14 Score=133.53 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=72.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG--~~I~Gr~IkVs~A~~k 307 (876)
.+.++|||+|||+++++++|+++|++||+|++|++. ..||||||+|.+.++|.+|++.|++ ..|.|++|+|.|++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 356799999999999999999999999999999984 3589999999999999999999984 6899999999999986
Q ss_pred hhH
Q 002823 308 GLR 310 (876)
Q Consensus 308 ~~R 310 (876)
..+
T Consensus 108 ~~~ 110 (119)
T 2ad9_A 108 ELK 110 (119)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 174
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=9.6e-14 Score=126.99 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCc-
Q 002823 143 DEHPSRTLLLRKINSNI------EDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG- 212 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~v------TEeeL~elFsqfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr- 212 (876)
.+..+++|||+|||+.+ ++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++.|+|..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 45567999999999999 7899999999999999998 3567899999999999999999999999999999
Q ss_pred eeeEeecCCCC
Q 002823 213 KLDIHYSIPKD 223 (876)
Q Consensus 213 ~L~V~~A~pk~ 223 (876)
+|+|.++...+
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999987543
No 175
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=122.39 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=71.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 356799999999999999999999999999999984 6699999999999999999999999999999999998864
No 176
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.48 E-value=3.5e-14 Score=128.96 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=72.2
Q ss_pred cceeEeecCCC------CCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC-eEE
Q 002823 232 QGTLVVFNLDS------SVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-KQI 299 (876)
Q Consensus 232 ~~tLfV~NLP~------svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G-r~I 299 (876)
.++|||+|||. ++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 9999999999999999999987 36788999999999999999999999999999 999
Q ss_pred EEEeecCch
Q 002823 300 KLEPSHLRG 308 (876)
Q Consensus 300 kVs~A~~k~ 308 (876)
+|.++.+++
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 177
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=8.4e-14 Score=130.06 Aligned_cols=77 Identities=19% Similarity=0.104 Sum_probs=71.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcC-CeEEEEe-cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG-~I~sVri-tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..+|||+|||.++++++|+++|++|| +|..+++ ...++|||||+|.+.++|++|++.|||..|.|++|+|++++.+.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 56899999999999999999999999 9999998 45689999999999999999999999999999999999997654
No 178
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=124.27 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeC--CCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 145 HPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYRA--SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~----elFsqfG~I~sV~~t--gksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...++|||+|||+++++++|+ ++|++||+|.+|+.. ...+|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999 999999999999842 22289999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9876543
No 179
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.6e-14 Score=125.71 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=72.6
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
...++|||+|||..+++++|+++|++||+|..|++. ..++||||+|.+.++|++|++.|+|..|.|++|+|.|++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 356799999999999999999999999999999984 458999999999999999999999999999999999998854
No 180
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=6e-14 Score=126.69 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=71.5
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
..++|||+|||.++++++|+++|++||.|.+|++. ..++||||+|.+.++|.+|++.|||..+.|++|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35699999999999999999999999999999984 67899999999999999999999999999999999999874
No 181
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=9.5e-14 Score=126.14 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=72.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhH
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 310 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~R 310 (876)
+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..|.|++|+|.|++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 46799999999999999999999999999999984 779999999999999999999999999999999999987644
No 182
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.7e-13 Score=123.85 Aligned_cols=76 Identities=28% Similarity=0.378 Sum_probs=71.5
Q ss_pred cccceeEeecCCC-CCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~-svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
...++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 4567999999998 9999999999999999999999 48999999999999999999999999999999999998753
No 183
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=4e-14 Score=134.56 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--EE-----eCCCccceEeeecCCHHHHHHHHHHcccc----cc
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FY-----RASKHCGFVTISYYDIRAARNAMKSLQNK----LT 209 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~s--V~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~----~l 209 (876)
+..+.+.++|||+|||+++|+++|+++|++||.|.. |+ .++++||||||+|.+. +|++|++.|++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 345577899999999999999999999999999966 66 3688999999999999 999999999999 99
Q ss_pred CCceeeEeecCCCCCC
Q 002823 210 RSGKLDIHYSIPKDNP 225 (876)
Q Consensus 210 ~Gr~L~V~~A~pk~~~ 225 (876)
.|++|+|+++.++...
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999887543
No 184
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=8.7e-14 Score=128.43 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=72.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
...+.++++|||+|||.++++++|+++|++||.|..++.. +|||||+|.+.++|++|++.|+|..+.|+.|+|.|+.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456778999999999999999999999999999999864 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 002823 221 PKDN 224 (876)
Q Consensus 221 pk~~ 224 (876)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7643
No 185
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=124.15 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=70.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEE--------EEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~s--------Vri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
....+|||+|||.++++++|+++|++||.|.. |++ ++..+|||||+|.+.++|++|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45679999999999999999999999999998 776 35668999999999999999999999999999
Q ss_pred eEEEEEeec
Q 002823 297 KQIKLEPSH 305 (876)
Q Consensus 297 r~IkVs~A~ 305 (876)
++|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 186
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.5e-13 Score=124.17 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~-~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
...++++|||+|||. ++++++|+++|++||.|..++. .+|||||+|.+.++|++|++.|+|..+.|++|+|+|+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 456789999999998 9999999999999999999988 489999999999999999999999999999999999876
Q ss_pred C
Q 002823 222 K 222 (876)
Q Consensus 222 k 222 (876)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=126.83 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=72.6
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchh
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~ 309 (876)
..++|||+|||..+++++|+++|++||.|..|++... ++||||+|.+.++|.+|++.|+|..|.|++|+|.|++++..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 4669999999999999999999999999999998443 89999999999999999999999999999999999998653
No 188
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4e-14 Score=123.72 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.++++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5678999999999999999999999999999998 35678999999999999999999999999999999998875
Q ss_pred C
Q 002823 220 I 220 (876)
Q Consensus 220 ~ 220 (876)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=126.49 Aligned_cols=82 Identities=12% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.++|||+|||.++++++|+++|++||.|..|+... .+|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 345678999999999999999999999999999998633 3899999999999999999999999999999999999887
Q ss_pred CCC
Q 002823 223 DNP 225 (876)
Q Consensus 223 ~~~ 225 (876)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 190
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=1e-13 Score=121.74 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
..++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|+ .+++..+.|++|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 358999999999999999999999999999987 26778999999999999999999 999999999999999987
Q ss_pred CC
Q 002823 221 PK 222 (876)
Q Consensus 221 pk 222 (876)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 191
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.4e-13 Score=123.17 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++ ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 4567799999999999999999999999999999872 47789999999999999999998 4678999999999
Q ss_pred ecCCCCCCC
Q 002823 218 YSIPKDNPS 226 (876)
Q Consensus 218 ~A~pk~~~~ 226 (876)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 998876543
No 192
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=1.1e-13 Score=121.52 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=70.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||+|||.++++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999887 4556899999999999999999 999999999999999998
Q ss_pred Cc
Q 002823 306 LR 307 (876)
Q Consensus 306 ~k 307 (876)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 193
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6.5e-14 Score=129.77 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
+...++|||+|||.++++++|+++|++||.|..|+.. +.+|||||+|.+.++|++|++.|+|..+.|+.|+|.|+...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3456899999999999999999999999999999863 58899999999999999999999999999999999998654
No 194
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=128.23 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=71.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..++|||+|||..+++++|+++|++||.|..|++ ...++||||+|.+.++|++|++.|||..+.|++|+|+|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4569999999999999999999999999999998 4578999999999999999999999999999999999997643
No 195
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=9.2e-14 Score=132.46 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=73.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||+|+.|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35679999999999999999999999999999988 3567899999999999999999999999999999999999
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8864
No 196
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=8e-14 Score=125.22 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 143 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~-~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
...++++|||+|||+ ++++++|+++|++||+|..++. .+|||||+|.+.++|++|++.|++..+.|++|+|+++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 456789999999998 9999999999999999999987 489999999999999999999999999999999999987
Q ss_pred CCCC
Q 002823 222 KDNP 225 (876)
Q Consensus 222 k~~~ 225 (876)
+...
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6544
No 197
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.46 E-value=1.9e-13 Score=124.48 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=70.6
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
....+|||+|||..+++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.|+|..|.|++|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 35679999999999999999999999999999887 44568999999999999999999999999999999999986
No 198
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=1e-13 Score=123.89 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=73.5
Q ss_pred ccceeEeecCCCCCcHHHHH----HHhhhcCCeEEEEec--CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 231 NQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRET--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLr----eiFs~fG~I~sVrit--g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
+.++|||+|||.++++++|+ ++|++||.|..|++. +..+|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999 999999999999883 356899999999999999999999999999999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
+++..+
T Consensus 87 ~~~~~~ 92 (97)
T 1nu4_A 87 KTDSDI 92 (97)
T ss_dssp SSCCTH
T ss_pred cCCCcc
Confidence 987543
No 199
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-14 Score=124.85 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=70.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
....+|||+|||.++++++|+++|++||.|....+++..++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3467999999999999999999999999996322356789999999999999999999999999999999999998864
No 200
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=131.62 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=73.6
Q ss_pred ccceeEeecCCCCCcHHHHH----HHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 231 NQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLr----eiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
+..+|||+|||..+++++|+ ++|++||.|.+|.+ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 46799999999999999876 69999999999887 4678999999999999999999999999999999999999
Q ss_pred cCchhHH
Q 002823 305 HLRGLRK 311 (876)
Q Consensus 305 ~~k~~Rr 311 (876)
+.+..+.
T Consensus 108 ~~~~~~~ 114 (127)
T 2a3j_A 108 ETPQSQV 114 (127)
T ss_dssp CCCCHHH
T ss_pred cCcchhc
Confidence 9876543
No 201
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=126.14 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=72.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...++|||+|||.++++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34679999999999999999999999999999887 34467999999999999999999999999999999999998
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 202
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=127.30 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=72.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeE--------EEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIK--------EIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~--------sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
...++|||+|||.++++++|+++|++||.|. .|++ ++..++||||+|.+.++|++|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4567999999999999999999999999998 5776 35568999999999999999999999999999
Q ss_pred eEEEEEeecCchh
Q 002823 297 KQIKLEPSHLRGL 309 (876)
Q Consensus 297 r~IkVs~A~~k~~ 309 (876)
++|+|.+++++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999998653
No 203
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=6e-14 Score=125.84 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.....++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345568999999999999999999999999885432 457789999999999999999999999999999999999
Q ss_pred ecCCC
Q 002823 218 YSIPK 222 (876)
Q Consensus 218 ~A~pk 222 (876)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98653
No 204
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=125.83 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe------CCCccceEeeecCCHHHHHHHHHHcc--ccccCCceee
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGD-VRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLD 215 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~-I~sV~~------tgksrGfAFV~F~d~edA~kAl~~Ln--g~~l~Gr~L~ 215 (876)
.+.++|||+|||.++++++|+++|++||. |..+.. +++++|||||+|.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 999984 34789999999999999999999996 5899999999
Q ss_pred EeecCCCCCCC
Q 002823 216 IHYSIPKDNPS 226 (876)
Q Consensus 216 V~~A~pk~~~~ 226 (876)
|.|+.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 205
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.46 E-value=1.2e-13 Score=121.18 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.+.+.++|||+|||+++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++ +++..+.|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999982 47789999999999999999995 57888999999998
Q ss_pred ec
Q 002823 218 YS 219 (876)
Q Consensus 218 ~A 219 (876)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 206
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=2e-13 Score=133.07 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999984 57789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002823 218 YSIPKDN 224 (876)
Q Consensus 218 ~A~pk~~ 224 (876)
|+.++..
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987654
No 207
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-13 Score=121.29 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.++|||+|| ++++++|+++|++||+|..|+. .+.+|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4467799999996 8999999999999999999997 578999999999999999999999999999999999999887
Q ss_pred CCC
Q 002823 223 DNP 225 (876)
Q Consensus 223 ~~~ 225 (876)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 208
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.8e-13 Score=124.07 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=71.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||.++++++|+++|++|| |..|++ ++..+|||||+|.+.++|++|+ .||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3567999999999999999999999997 999887 3567899999999999999999 89999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88653
No 209
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=125.04 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=72.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec------CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit------g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
....+|||+|||.++++++|+++|+.|| |..|++. +..++||||+|.+.++|++|+ .|++..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3567999999999999999999999999 9999882 567899999999999999999 9999999999999999
Q ss_pred ecCchhH
Q 002823 304 SHLRGLR 310 (876)
Q Consensus 304 A~~k~~R 310 (876)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9986543
No 210
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=121.20 Aligned_cols=79 Identities=9% Similarity=0.203 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.....++|||+|||+++++++|+++|++| .|..|+ .+++++|||||+|.+.++|++|++ |++..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 888887 357789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 002823 219 SIPKD 223 (876)
Q Consensus 219 A~pk~ 223 (876)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 211
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=7e-14 Score=126.68 Aligned_cols=79 Identities=14% Similarity=0.279 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe------CCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
...+.++|||+|||.++++++|+++|++|| |..|+. +++++|||||+|.+.++|++|+ .|++..+.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 446679999999999999999999999999 999983 5678999999999999999999 89999999999999
Q ss_pred eecCCCC
Q 002823 217 HYSIPKD 223 (876)
Q Consensus 217 ~~A~pk~ 223 (876)
+++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 212
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=125.68 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=71.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCC-----eEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-----KQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G-----r~IkVs~A~ 305 (876)
...+|||+|||.++++++|+++|++||+|+.|++... +||||+|.+.++|++||+.|||..|.| ++|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4679999999999999999999999999999998443 999999999999999999999999999 999999999
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
++.
T Consensus 92 ~~~ 94 (108)
T 1x4c_A 92 PRS 94 (108)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 213
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=8.5e-14 Score=128.59 Aligned_cols=81 Identities=12% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEe--------CCCccceEeeecCCHHHHHHHHHHccccccCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELK---ALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 211 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~---elFsqfG~I~sV~~--------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G 211 (876)
.....++|||+|||+++++++|+ ++|++||+|..|+. .++++|||||+|.+.++|++|++.|++..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 99999999999983 12566999999999999999999999999999
Q ss_pred ceeeEeecCCCC
Q 002823 212 GKLDIHYSIPKD 223 (876)
Q Consensus 212 r~L~V~~A~pk~ 223 (876)
++|+|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.46 E-value=2.1e-13 Score=132.68 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.|+|..+.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999982 67899999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 002823 218 YSIPKDNPS 226 (876)
Q Consensus 218 ~A~pk~~~~ 226 (876)
|+.++....
T Consensus 146 ~a~~~~~~~ 154 (158)
T 2kn4_A 146 MARYGRPPD 154 (158)
T ss_dssp EECCSSCCC
T ss_pred ECCCCCCCC
Confidence 998775443
No 215
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=129.18 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4457899999999999999999999999999999983 46789999999999999999999999999999999998
Q ss_pred ec
Q 002823 218 YS 219 (876)
Q Consensus 218 ~A 219 (876)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 216
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=2e-13 Score=132.97 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=74.4
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||..+++++|+++|++||+|+.|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999988 4567899999999999999999999999999999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
++...+
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 986543
No 217
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=126.80 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=72.2
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
+...++|||+|||.++++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.+++ .|.|++|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 345779999999999999999999999999999988 345689999999999999999999998 89999999999
Q ss_pred ecCch
Q 002823 304 SHLRG 308 (876)
Q Consensus 304 A~~k~ 308 (876)
++++.
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 98754
No 218
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=128.99 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=72.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
..++|||+|||.++++++|+++|++||.|+.|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999888 455679999999999999999999999999999999999987
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
+.
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 219
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.45 E-value=1.1e-13 Score=129.38 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEe-CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG-~I~sV~~-tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
....++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|+|..+.|+.|+|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 8999986 467899999999999999999999999999999999999865
Q ss_pred C
Q 002823 222 K 222 (876)
Q Consensus 222 k 222 (876)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 220
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1e-13 Score=127.81 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=73.1
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCe----EEEEe-cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEI----KEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I----~sVri-tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||.++++++|+++|++||.| ..+++ ++..+|||||+|.+.++|++|++.|+|..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 356799999999999999999999999998 45554 6788999999999999999999999999999999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 986543
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.45 E-value=2.3e-13 Score=131.81 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.++|||+|||+++++++|+++|++||.|.+|+....++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 45667999999999999999999999999999999976668999999999999999999999999999999999999876
Q ss_pred C
Q 002823 223 D 223 (876)
Q Consensus 223 ~ 223 (876)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 222
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=2.2e-13 Score=127.84 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...++++|||+|||.++++++|+++|++||+|..|+. +++++|||||+|.+.++|++|++.|++..+.|++|+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4467799999999999999999999999999998883 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 223
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=123.31 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=72.7
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
....++|||+|||.++++++|+++|+.|+.|.-++. ++..++||||+|.+.++|++|++.||+..|.|++|+|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 445779999999999999999999999987766654 566789999999999999999999999999999999999998
Q ss_pred chh
Q 002823 307 RGL 309 (876)
Q Consensus 307 k~~ 309 (876)
+..
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 224
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.1e-14 Score=125.96 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=73.8
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhh-cCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCce-eCCeEEEEEee
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGV-YGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRY-IAGKQIKLEPS 304 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~-fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~-I~Gr~IkVs~A 304 (876)
...+|||+|||.++++++|+++|++ ||.|..|++ ++..++||||+|.+.++|.+|++.|++.. +.|++|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4679999999999999999999999 999999887 45578999999999999999999999999 99999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
.++..+
T Consensus 88 ~~~~~~ 93 (104)
T 2dhg_A 88 IPKASR 93 (104)
T ss_dssp CCCCSC
T ss_pred cCCCcC
Confidence 887644
No 225
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=125.34 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=71.4
Q ss_pred cccceeEeecCCCCC------cHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-EE
Q 002823 230 INQGTLVVFNLDSSV------SNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QI 299 (876)
Q Consensus 230 ~~~~tLfV~NLP~sv------TeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr-~I 299 (876)
...++|||+|||..+ ++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346799999999999 78999999999999999988 456789999999999999999999999999998 99
Q ss_pred EEEeecCc
Q 002823 300 KLEPSHLR 307 (876)
Q Consensus 300 kVs~A~~k 307 (876)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999764
No 226
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=123.44 Aligned_cols=78 Identities=24% Similarity=0.210 Sum_probs=69.8
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||.++++++|+++|++||.|..+++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34579999999999999999999999999875332 4567899999999999999999999999999999999998
Q ss_pred cCc
Q 002823 305 HLR 307 (876)
Q Consensus 305 ~~k 307 (876)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 227
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.45 E-value=4.5e-14 Score=125.75 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.++|||+|||+++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999886443 3567899999999999999999999999999999999998
Q ss_pred cC
Q 002823 219 SI 220 (876)
Q Consensus 219 A~ 220 (876)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 228
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-13 Score=124.23 Aligned_cols=77 Identities=27% Similarity=0.352 Sum_probs=71.6
Q ss_pred cccceeEeecCCC-CCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~-svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
.+..+|||+|||. .+++++|+++|++||.|..|++ .++||||+|.+.++|.+|++.|+|..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4567999999998 9999999999999999999998 48999999999999999999999999999999999998765
Q ss_pred h
Q 002823 309 L 309 (876)
Q Consensus 309 ~ 309 (876)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 229
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.45 E-value=1.4e-13 Score=129.16 Aligned_cols=81 Identities=26% Similarity=0.408 Sum_probs=74.0
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||..+++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34669999999999999999999999999999988 4556899999999999999999999999999999999999
Q ss_pred cCchhH
Q 002823 305 HLRGLR 310 (876)
Q Consensus 305 ~~k~~R 310 (876)
.++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 230
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=123.83 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=71.8
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeE-EEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE----EE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIK-EIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ----IK 300 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~-sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~----Ik 300 (876)
..++|||+|||.++++++|+++|++||.|. .|++ ++..++||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 467999999999999999999999999999 8877 4567799999999999999999999999999999 99
Q ss_pred EEeecCch
Q 002823 301 LEPSHLRG 308 (876)
Q Consensus 301 Vs~A~~k~ 308 (876)
|.|+++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998753
No 231
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=126.32 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=71.8
Q ss_pred cccceeEeecCCCCCcHHHHH---HHhhhcCCeEEEEecC--------CcccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 002823 230 INQGTLVVFNLDSSVSNDELH---HIFGVYGEIKEIRETP--------QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 298 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLr---eiFs~fG~I~sVritg--------~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~ 298 (876)
...++|||+|||.++++++|+ ++|++||+|..|++.. .++|||||+|.+.++|++|++.|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 9999999999988822 34589999999999999999999999999999
Q ss_pred EEEEeecCch
Q 002823 299 IKLEPSHLRG 308 (876)
Q Consensus 299 IkVs~A~~k~ 308 (876)
|+|+|++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998864
No 232
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=134.34 Aligned_cols=80 Identities=13% Similarity=0.234 Sum_probs=73.6
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcC--CeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG--~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
..+|||+|||.++++++|+++|+.|| .|.+|++ ++..+|||||+|.+.++|++||+.|||..|.|++|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 46999999999999999999999999 9999887 5677899999999999999999999999999999999999
Q ss_pred cCchhHH
Q 002823 305 HLRGLRK 311 (876)
Q Consensus 305 ~~k~~Rr 311 (876)
.++..++
T Consensus 135 ~~~~~~~ 141 (156)
T 3n9u_C 135 TRQNLSQ 141 (156)
T ss_dssp CHHHHHH
T ss_pred CCCcchh
Confidence 8866544
No 233
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=120.35 Aligned_cols=70 Identities=11% Similarity=0.276 Sum_probs=65.2
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhccCCeEEEE---eCCCccceEeeecCCHHHHHHHHHHccccccCCc-eeeE
Q 002823 147 SRTLLLRKINSNI------EDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG-KLDI 216 (876)
Q Consensus 147 SrTLFVgNLP~~v------TEeeL~elFsqfG~I~sV~---~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr-~L~V 216 (876)
+++|||+|||..+ ++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7799999999999999998 4567899999999999999999999999999999 8877
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=126.27 Aligned_cols=82 Identities=13% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.+ +..+.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4566799999999999999999999999999999983 4778999999999999999999876 589999999999
Q ss_pred ecCCCCCC
Q 002823 218 YSIPKDNP 225 (876)
Q Consensus 218 ~A~pk~~~ 225 (876)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887543
No 235
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=124.44 Aligned_cols=79 Identities=32% Similarity=0.372 Sum_probs=71.4
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
...++|||+|||.++++++|+++|++||.|.-++. ++..++||||+|.+.++|++|++.||+..|.|++|+|+|++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 45679999999999999999999999999854433 56678999999999999999999999999999999999998864
No 236
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=128.24 Aligned_cols=81 Identities=12% Similarity=0.318 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.++|||+|||.++++++|+++|++||.|..|+ .+++++|||||+|.+.++|++|++. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34468999999999999999999999999998887 2467899999999999999999987 99999999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9987654
No 237
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=4.8e-14 Score=131.95 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=70.6
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||+|||.++++++|+++|++||.|.+|++ ++..+|||||+|.+.++|++|+ .|||..|.|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4569999999999999999999999999999887 4567899999999999999999 799999999999999998
Q ss_pred Cc
Q 002823 306 LR 307 (876)
Q Consensus 306 ~k 307 (876)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 238
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.44 E-value=1.9e-13 Score=126.22 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=73.7
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..++|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|.+|++.|||..+.|++|+|.|+.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3569999999999999999999999999999888 56678999999999999999999999999999999999998755
Q ss_pred hH
Q 002823 309 LR 310 (876)
Q Consensus 309 ~R 310 (876)
.+
T Consensus 87 ~~ 88 (115)
T 3lqv_A 87 AF 88 (115)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 239
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=7.7e-14 Score=125.97 Aligned_cols=76 Identities=28% Similarity=0.417 Sum_probs=71.5
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
++|||+|||.++++++|+++|++||+|..|++...+++||||+|.+.++|++|++.|+|..+.|++|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 3799999999999999999999999999999855479999999999999999999999999999999999998865
No 240
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=122.91 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=69.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCC-eEEEEecCCcccEEEEEecCHHHHHHHHHHhCC-ceeCCeEEEEEeecCch
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRETPQKIHQKYIEFYDTRAAEAALRELNS-RYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~-I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG-~~I~Gr~IkVs~A~~k~ 308 (876)
..++|||+|||.++++++|+++|++||. |..+.+ .+++||||+|.+.++|++|++.||| ..+.|++|+|+|++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4579999999999999999999999999 665555 3689999999999999999999999 99999999999999865
Q ss_pred h
Q 002823 309 L 309 (876)
Q Consensus 309 ~ 309 (876)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 241
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.5e-14 Score=128.94 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
+...++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999984 3778999999999999999999 9999999999999999
Q ss_pred cCCC
Q 002823 219 SIPK 222 (876)
Q Consensus 219 A~pk 222 (876)
+.++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8764
No 242
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=127.24 Aligned_cols=80 Identities=13% Similarity=0.232 Sum_probs=72.6
Q ss_pred ccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 229 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 229 ~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
....++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++. ++..|.|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345679999999999999999999999999999887 355689999999999999999998 99999999999999
Q ss_pred ecCchh
Q 002823 304 SHLRGL 309 (876)
Q Consensus 304 A~~k~~ 309 (876)
++++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 998753
No 243
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3e-13 Score=123.54 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE-EE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT-FY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~s-V~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.....++|||+|||+++++++|+++|++||.|.. |+ .+++++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 65 3678999999999999999999987 9999999999999
Q ss_pred ecCCCC
Q 002823 218 YSIPKD 223 (876)
Q Consensus 218 ~A~pk~ 223 (876)
++.+++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 244
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.43 E-value=5.7e-13 Score=124.94 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=72.6
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
....+|||+|||..+++++|+++|++||.|+.|++ ++..+|||||+|.+.++|.+|++.|||..+.|++|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 35569999999999999999999999999999888 34578999999999999999999999999999999999998
Q ss_pred Cch
Q 002823 306 LRG 308 (876)
Q Consensus 306 ~k~ 308 (876)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 753
No 245
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=124.62 Aligned_cols=79 Identities=27% Similarity=0.414 Sum_probs=72.4
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||..+++++|+++|++||+|..|++ ++..++||||+|.+.++|++|++. ++..|.|++|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 45679999999999999999999999999999887 345679999999999999999998 999999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 98653
No 246
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.7e-13 Score=120.21 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=71.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchh
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~ 309 (876)
...++|||+|+ ++++++|+++|++||+|..|++ ...++||||+|.+.++|.+|++.|+|..|.|++|+|.|++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 35679999996 8999999999999999999998 57899999999999999999999999999999999999988653
No 247
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=1.3e-13 Score=122.77 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=68.0
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...+|||+|||.++++++|+++|++||.|..+++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4579999999999999999999999999876443 45678999999999999999999999999999999999986
Q ss_pred C
Q 002823 306 L 306 (876)
Q Consensus 306 ~ 306 (876)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 248
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=4e-13 Score=117.82 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=67.5
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ +++..+.|++|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 45679999999999999999999999999999887 35678999999999999999996 5888999999999975
No 249
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=3e-13 Score=134.72 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=70.4
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEec-CCcccEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEeecCch
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 308 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVrit-g~skG~AFVeF~d~E~A~kAL~~LnG~~I~G--r~IkVs~A~~k~ 308 (876)
..+|||+||+..+++++|+++|++||+|++|++. ..+++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4579999999999999999999999999999883 4457899999999999999999999999965 999999999864
No 250
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=135.60 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYG--DVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG--~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...++|||+|||+++++++|+++|++|| .|.+|+. +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999883 68899999999999999999999999999999999999
Q ss_pred ecCCC
Q 002823 218 YSIPK 222 (876)
Q Consensus 218 ~A~pk 222 (876)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98754
No 251
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=125.69 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.+.+.++|||+|||+++|+++|+++|++||+|.+|+. .++++|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999982 37789999999999999999998 899999999999998
Q ss_pred cCC
Q 002823 219 SIP 221 (876)
Q Consensus 219 A~p 221 (876)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 643
No 252
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=3.1e-13 Score=129.80 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=70.6
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEeecCch
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 308 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~-AFVeF~d~E~A~kAL~~LnG~~I~G--r~IkVs~A~~k~ 308 (876)
-.|||+||+..+|+++|+++|++||+|.+|++..+.+++ |||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 478999999999999999999999999999886566787 9999999999999999999999988 999999999864
No 253
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=2e-13 Score=120.63 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...++|||+|||+++++++|+++|++| .|..++.. +++|||||+|.+.++|++|++.|++..+.|++|+|+++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 456899999999999999999999999 99998863 88999999999999999999999999999999999998654
No 254
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=8.6e-14 Score=125.66 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..+.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34678999999999999999999999999776511 457899999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 002823 220 IPKDNP 225 (876)
Q Consensus 220 ~pk~~~ 225 (876)
.++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 887543
No 255
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.42 E-value=2.7e-13 Score=125.05 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=70.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|+.||.|.+|++ ++..+|||||+|.+.++|.+|++.+ +..+.|++|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 45679999999999999999999999999999988 3566899999999999999999976 59999999999999
Q ss_pred cCchh
Q 002823 305 HLRGL 309 (876)
Q Consensus 305 ~~k~~ 309 (876)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98754
No 256
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.3e-13 Score=124.96 Aligned_cols=80 Identities=6% Similarity=0.073 Sum_probs=72.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...++|||+|||.++|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|.+|+. +++..+.|++|+|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 35679999999999999999999999999999988 25578999999999999999999 99999999999999987
Q ss_pred CchhH
Q 002823 306 LRGLR 310 (876)
Q Consensus 306 ~k~~R 310 (876)
.-..+
T Consensus 88 ~~~~~ 92 (103)
T 1s79_A 88 DYFAK 92 (103)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 74433
No 257
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=119.16 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
....++|||+|||+++++++|+++|++||.|..++ ...+..+.|||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 4444556699999999999999999999999999999999988
Q ss_pred CC
Q 002823 222 KD 223 (876)
Q Consensus 222 k~ 223 (876)
++
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 258
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.42 E-value=1.5e-13 Score=117.21 Aligned_cols=70 Identities=14% Similarity=0.286 Sum_probs=65.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 149 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 149 TLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
+|||+|||+++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++ +++..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999999882 57789999999999999999997 9999999999999875
No 259
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=6.8e-13 Score=125.93 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=69.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||..+++++|+++|++||+|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35679999999999999999999999999999988 3457899999999999999999999999999999999986
No 260
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.7e-13 Score=125.85 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=74.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCe-EEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I-~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||.++++++|+++|+.||.| ..|++ ++..+|||||+|.+.++|++||+. |+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 346799999999999999999999999999 67776 456789999999999999999987 999999999999999
Q ss_pred cCchhHHHH
Q 002823 305 HLRGLRKCL 313 (876)
Q Consensus 305 ~~k~~Rr~l 313 (876)
.++..++..
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988766544
No 261
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.42 E-value=6e-14 Score=123.91 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.+ |++|++.|+|..+.|++|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999883 4778999999999999 99999999999999999999999876
Q ss_pred CCC
Q 002823 223 DNP 225 (876)
Q Consensus 223 ~~~ 225 (876)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 262
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.5e-14 Score=130.59 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE---EE--eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT---FY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~s---V~--~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||+++++++|+++|++||.|.. +. .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456689999999999999999999999998854 22 467889999999999999999998 99999999999999
Q ss_pred ecCCC
Q 002823 218 YSIPK 222 (876)
Q Consensus 218 ~A~pk 222 (876)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 263
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.42 E-value=1.8e-13 Score=116.84 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=65.4
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ |++..+.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999887 45568999999999999999998 9999999999999985
No 264
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-13 Score=129.12 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=70.7
Q ss_pred cccceeEeecCCCC-CcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEeecC
Q 002823 230 INQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHL 306 (876)
Q Consensus 230 ~~~~tLfV~NLP~s-vTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG--~~I~Gr~IkVs~A~~ 306 (876)
.+..+|||+|||.+ +++++|+++|++||+|.+|++ ...|+||||+|.+.++|.+|++.|++ ..|.|++|+|.|++.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 35679999999998 999999999999999999998 45689999999999999999998864 569999999999987
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 265
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=3.2e-13 Score=119.39 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=70.3
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
..++|||+|||.++++++|+++|++| +|.++++. ..+|||||+|.+.++|++|++.|||..+.|++|+|+|+..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35689999999999999999999999 99999884 78999999999999999999999999999999999998764
No 266
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.41 E-value=1.5e-13 Score=128.48 Aligned_cols=79 Identities=11% Similarity=0.242 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+.++|||+|||.++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999873 6778999999999999999999 89999999999999999
Q ss_pred CCCCC
Q 002823 220 IPKDN 224 (876)
Q Consensus 220 ~pk~~ 224 (876)
.+...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 76543
No 267
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.6e-13 Score=119.05 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=70.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEE-e-cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR-E-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVr-i-tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
...+|||+|||.++++++|+++|++||.|..|+ + .....+.|||+|.+.++|.+|++.|||..|.|++|+|+++.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457999999999999999999999999999995 5 33344569999999999999999999999999999999999874
No 268
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.6e-13 Score=123.06 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=72.2
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCC-eEEEEec------CCcccEEEEEecCHHHHHHHHHHhC--CceeCCeEEEE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRET------PQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKL 301 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~-I~sVrit------g~skG~AFVeF~d~E~A~kAL~~Ln--G~~I~Gr~IkV 301 (876)
..++|||+|||.++++++|+++|++||. |.+|++. +..+|||||+|.+.++|.+|++.|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4679999999999999999999999998 9999873 3678999999999999999999996 58999999999
Q ss_pred EeecCchh
Q 002823 302 EPSHLRGL 309 (876)
Q Consensus 302 s~A~~k~~ 309 (876)
.|++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998654
No 269
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.1e-13 Score=120.42 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=69.5
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 145 HPSRT-LLLRKINSNIEDSE----LKALFEQY-GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 145 ~pSrT-LFVgNLP~~vTEee----L~elFsqf-G~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.|+.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.||+|+|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 46777 99999999999988 55899999 599998 33 9999999999999999999999999999999999
Q ss_pred cCCCCCCCc
Q 002823 219 SIPKDNPSE 227 (876)
Q Consensus 219 A~pk~~~~e 227 (876)
+..+.+..+
T Consensus 81 A~~~sd~~~ 89 (96)
T 2diu_A 81 TPKNRELCE 89 (96)
T ss_dssp SCCSCCCCC
T ss_pred cCCCcceeE
Confidence 988776543
No 270
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=4.8e-13 Score=128.49 Aligned_cols=83 Identities=14% Similarity=0.302 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------E--EeCCCccceEeeecCCHHHHHHHHHHccccccCCc
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------F--YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~s--------V--~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr 212 (876)
...++++|||+|||+++++++|+++|++||.|.. + ..+++++|||||+|.+.++|++|++.|+|..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3567899999999999999999999999998865 2 25789999999999999999999999999999999
Q ss_pred eeeEeecCCCCCC
Q 002823 213 KLDIHYSIPKDNP 225 (876)
Q Consensus 213 ~L~V~~A~pk~~~ 225 (876)
.|.|.|+.+....
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999776543
No 271
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.6e-13 Score=117.60 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=70.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...+|||+|||.++++++|+++|+.| .|..|++ ++..+|||||+|.+.++|.+|++ |||..|.|++|+|.++.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 45799999999999999999999999 9999877 45568999999999999999999 999999999999999987
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
+.
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 272
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.41 E-value=4e-13 Score=132.55 Aligned_cols=85 Identities=14% Similarity=0.282 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 141 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 141 p~~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+....+.++|||+|||+.+++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567889999999999999999999999999999883 566899999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 002823 216 IHYSIPKDNP 225 (876)
Q Consensus 216 V~~A~pk~~~ 225 (876)
|.|+.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 273
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-13 Score=117.46 Aligned_cols=71 Identities=14% Similarity=0.302 Sum_probs=66.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
++|||+|||+++++++|+++|++||+|..++ .+++++|||||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4899999999999999999999999998887 257789999999999999999999999 9999999999986
No 274
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=6.9e-13 Score=132.09 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-CCCccceEeeecCCHHHHHHHHHHccccccCC--ceeeEeec
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYS 219 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G--r~L~V~~A 219 (876)
......+|||+||++.+|+++|+++|++||+|++|++ +.+.+|||||+|.+.++|++|++.|+|..|.| ++|+|+|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3444578999999999999999999999999999995 34568899999999999999999999999965 99999999
Q ss_pred CCCCCC
Q 002823 220 IPKDNP 225 (876)
Q Consensus 220 ~pk~~~ 225 (876)
+++...
T Consensus 122 k~~~l~ 127 (164)
T 1sjr_A 122 KLTSLN 127 (164)
T ss_dssp SSSSCC
T ss_pred cCCccc
Confidence 987543
No 275
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.8e-14 Score=121.53 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=69.6
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
..++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|.+|++.|||..+.|+.|++.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4579999999999999999999999999999887 35568999999999999999999999999999999988765
Q ss_pred C
Q 002823 306 L 306 (876)
Q Consensus 306 ~ 306 (876)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 276
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.5e-13 Score=122.46 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=71.0
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCcee--------CCe
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYI--------AGK 297 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I--------~Gr 297 (876)
....+|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 35679999999999999999999999999999887 345689999999999999999999999999 578
Q ss_pred EEEEEeecCc
Q 002823 298 QIKLEPSHLR 307 (876)
Q Consensus 298 ~IkVs~A~~k 307 (876)
+|+|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 277
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=3.1e-13 Score=130.55 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=72.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCC---eEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~---I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
...+|||+|||.++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ ||+..|.|++|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4568999999999999999999999999 777776 35678999999999999999999 999999999999999
Q ss_pred ecCchhHHHH
Q 002823 304 SHLRGLRKCL 313 (876)
Q Consensus 304 A~~k~~Rr~l 313 (876)
+.+++..+.+
T Consensus 122 a~~~e~~~~~ 131 (136)
T 2hgl_A 122 SHRTEMDWVL 131 (136)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHH
Confidence 9877655443
No 278
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=118.50 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=64.2
Q ss_pred ceeEeecCCCCC------cHHHHHHHhhhcCCeEEEEe---cCCcccEEEEEecCHHHHHHHHHHhCCceeCCe-EEEE
Q 002823 233 GTLVVFNLDSSV------SNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QIKL 301 (876)
Q Consensus 233 ~tLfV~NLP~sv------TeedLreiFs~fG~I~sVri---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr-~IkV 301 (876)
++|||+|||..+ ++++|+++|++||+|.+|++ ++.++|||||+|.+.++|.+|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 78999999999999999987 446789999999999999999999999999999 8876
No 279
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.1e-13 Score=125.59 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=71.8
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcccccc-----CCceee
Q 002823 143 DEHPSRTLLL--RKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT-----RSGKLD 215 (876)
Q Consensus 143 ~e~pSrTLFV--gNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l-----~Gr~L~ 215 (876)
...|+++||| +||++++++++|+++|++||.|..|++. ..||||||+|.+.++|++|++.|+|+.+ .|++|.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4567899999 7799999999999999999999999863 4689999999999999999999999988 689999
Q ss_pred EeecCCCC
Q 002823 216 IHYSIPKD 223 (876)
Q Consensus 216 V~~A~pk~ 223 (876)
|.|+....
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99986543
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=4.2e-13 Score=125.63 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=72.3
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCC---eEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~---I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
...+|||+|||.++++++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ +|+..|.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4568999999999999999999999999 777776 45678999999999999999999 999999999999999
Q ss_pred ecCchhHHH
Q 002823 304 SHLRGLRKC 312 (876)
Q Consensus 304 A~~k~~Rr~ 312 (876)
+.+++..+.
T Consensus 95 a~~~~~~~~ 103 (118)
T 2db1_A 95 SHRTEMDWV 103 (118)
T ss_dssp ECHHHHHHH
T ss_pred CCHHHHHHH
Confidence 987664443
No 281
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-12 Score=118.50 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=70.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|.+|++ ++..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 35679999999999999999999999999999887 35678999999999999999998 578999999999999
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9865
No 282
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=1.2e-13 Score=122.02 Aligned_cols=75 Identities=16% Similarity=0.351 Sum_probs=67.3
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
++|||+|||.++++++|+++|++||+|.+|++ ++.++|||||+|.+.+ |.+|++.|||..+.|++|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999988 3566899999999999 99999999999999999999999885
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 283
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=130.53 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=71.6
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEE--EEe-----cCCcccEEEEEecCHHHHHHHHHHhCCc----eeCCeE
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSR----YIAGKQ 298 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~s--Vri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~----~I~Gr~ 298 (876)
...++|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+. +|.+|++.|||. .+.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45679999999999999999999999999966 776 566789999999999 999999999999 999999
Q ss_pred EEEEeecCch
Q 002823 299 IKLEPSHLRG 308 (876)
Q Consensus 299 IkVs~A~~k~ 308 (876)
|+|++++++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998854
No 284
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=6.8e-13 Score=127.47 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccce-EeeecCCHHHHHHHHHHccccccCC--ceeeEeecCC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSIP 221 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGf-AFV~F~d~edA~kAl~~Lng~~l~G--r~L~V~~A~p 221 (876)
.+-..|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.| +.|+|+|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 444677899999999999999999999999999965567888 9999999999999999999999988 8999999988
Q ss_pred CCCC
Q 002823 222 KDNP 225 (876)
Q Consensus 222 k~~~ 225 (876)
+.-.
T Consensus 106 ~~l~ 109 (130)
T 3zzy_A 106 TSLN 109 (130)
T ss_dssp SSCC
T ss_pred Ccee
Confidence 7543
No 285
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=123.73 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=68.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe------cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE------TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri------tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
...++|||+|||.++++++|+++|+.|| |.+|++ ++..+|||||+|.+.++|.+|+ .|+|..|.|++|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3567999999999999999999999999 999998 2445899999999999999999 8999999999999999
Q ss_pred ecCch
Q 002823 304 SHLRG 308 (876)
Q Consensus 304 A~~k~ 308 (876)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98753
No 286
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=116.72 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~ 224 (876)
...++|||+|||+++++++|+++|++||.|..|........||||+|.+.++|++|++ |++..+.|+.|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999986432222299999999999999999 999999999999999877654
Q ss_pred C
Q 002823 225 P 225 (876)
Q Consensus 225 ~ 225 (876)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 287
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=1.5e-13 Score=124.00 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=70.1
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEE----ecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR----ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVr----itg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...+|||+|||.++++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++ |||..|.|++|+|.++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 467999999999999999999999999876611 246789999999999999999998 999999999999999988
Q ss_pred chhH
Q 002823 307 RGLR 310 (876)
Q Consensus 307 k~~R 310 (876)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 288
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=6.5e-13 Score=118.44 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccc--cCCceeeEeecC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYSI 220 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~--l~Gr~L~V~~A~ 220 (876)
...+..+|||+|||+++|+++|+++|++||+|.+|+....+||||||+|.+.++|++ +++.. +.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999766799999999999999984 34444 569999999998
Q ss_pred CCCC
Q 002823 221 PKDN 224 (876)
Q Consensus 221 pk~~ 224 (876)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7654
No 289
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3e-13 Score=125.50 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCe-EEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDV-RTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I-~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
.+.+.++|||+|||+++++++|+++|++||.| ..|+ .+++++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 5565 3577899999999999999999977 9999999999999
Q ss_pred ecCCCC
Q 002823 218 YSIPKD 223 (876)
Q Consensus 218 ~A~pk~ 223 (876)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 290
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=9.1e-13 Score=120.28 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=71.0
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEE-EEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~s-Vri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
....+|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++. ++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34679999999999999999999999999987 776 566789999999999999999997 999999999999998
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7754
No 291
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=2.9e-13 Score=115.70 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=66.1
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
++|||+|||.++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999999999999887 35568999999999999999999999 9999999999987
No 292
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=1.7e-12 Score=115.77 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=63.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCce--eCCeEEEEEeecCc
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY--IAGKQIKLEPSHLR 307 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~--I~Gr~IkVs~A~~k 307 (876)
....+|||+|||.++++++|+++|++||.|.+|++..++||||||+|.+.++|++ +++.. +.|++|+|.++.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 4567999999999999999999999999999999977789999999999999983 56655 45999999999987
Q ss_pred hhH
Q 002823 308 GLR 310 (876)
Q Consensus 308 ~~R 310 (876)
..+
T Consensus 85 ~~~ 87 (89)
T 3d2w_A 85 HNK 87 (89)
T ss_dssp ---
T ss_pred CcC
Confidence 643
No 293
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=4.1e-13 Score=125.70 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~---I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
....++|||+|||+++|+++|+++|++||. |..|+ ..++++|||||+|.+.++|++|++ +++..|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 455789999999999999999999999998 66665 347789999999999999999998 9999999999999
Q ss_pred eecCCC
Q 002823 217 HYSIPK 222 (876)
Q Consensus 217 ~~A~pk 222 (876)
.++.++
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987543
No 294
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=4.6e-14 Score=130.90 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EE-----eCCCccceEeeecCCHHHHHHHHHHcccccc
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------FY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLT 209 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~s--------V~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l 209 (876)
+..+.++|||+|||.++++++|+++|++||.|.. |+ .+++++|||||+|.+.++|++|++.|++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999987 54 3467899999999999999999999999999
Q ss_pred CCceeeEeecCCCCCC
Q 002823 210 RSGKLDIHYSIPKDNP 225 (876)
Q Consensus 210 ~Gr~L~V~~A~pk~~~ 225 (876)
.|++|+|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999887654
No 295
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.37 E-value=7e-13 Score=127.36 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=71.7
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEE--------EE--ecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IR--ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~s--------Vr--itg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
...+|||+|||..+++++|+++|+.||.|.. |+ .++..+|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4679999999999999999999999998865 33 3678899999999999999999999999999999999
Q ss_pred EEeecCchhH
Q 002823 301 LEPSHLRGLR 310 (876)
Q Consensus 301 Vs~A~~k~~R 310 (876)
|.|+++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876544
No 296
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=2.1e-13 Score=123.36 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.+.++++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4556799999999999999999999999999999883 56789999999999999999997 88999999999999
Q ss_pred cCCCCCC
Q 002823 219 SIPKDNP 225 (876)
Q Consensus 219 A~pk~~~ 225 (876)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 9876543
No 297
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.5e-13 Score=120.69 Aligned_cols=79 Identities=8% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...+.++|||+|||+++|+++|+++|++||.| .|+ .+++++|||||+|.+.++|++|+ .+++..|.++.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 34566899999999999999999999999965 665 36788999999999999999999 5799999999999999
Q ss_pred cCCCC
Q 002823 219 SIPKD 223 (876)
Q Consensus 219 A~pk~ 223 (876)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 298
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-13 Score=127.00 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=71.4
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEE-EEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~s-Vri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...+|||+|||.++++++|+++|+.||.|.. +.+ ++..+|||||+|.+.++|++||+ ||+..|.|++|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4569999999999999999999999999865 222 56778999999999999999999 99999999999999999
Q ss_pred CchhHH
Q 002823 306 LRGLRK 311 (876)
Q Consensus 306 ~k~~Rr 311 (876)
+++..+
T Consensus 103 ~~~~~~ 108 (124)
T 1wel_A 103 KKGMLE 108 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
No 299
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=1.4e-12 Score=124.30 Aligned_cols=74 Identities=20% Similarity=0.154 Sum_probs=67.7
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEeecCch
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 308 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~-AFVeF~d~E~A~kAL~~LnG~~I~G--r~IkVs~A~~k~ 308 (876)
.|||+||+..+++++|+++|++||+|++|++..+ .|+ |||+|.+.++|.+|++.|||..|.| ++|+|.|++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999999999999999999999999988443 586 9999999999999999999999987 699999999864
No 300
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=7.3e-13 Score=116.76 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 224 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~ 224 (876)
.++++|||+|||+++++++|+++|++||+|..|+....++|||||+|.+.++|++|+.. ...+.|++|+|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 45789999999999999999999999999999997667899999999999999865432 3456899999999988765
Q ss_pred C
Q 002823 225 P 225 (876)
Q Consensus 225 ~ 225 (876)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.36 E-value=7e-13 Score=138.31 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=73.5
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcC--CeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG--~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
..+|||+||+.++++++|+++|++|| +|++|++ ++++||||||+|.+.++|++||+.||+..|.|++|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 55899999999999999999999999 9999887 5668899999999999999999999999999999999999
Q ss_pred cCchhHH
Q 002823 305 HLRGLRK 311 (876)
Q Consensus 305 ~~k~~Rr 311 (876)
++....+
T Consensus 148 ~~~~~~~ 154 (229)
T 3q2s_C 148 NKQFLSQ 154 (229)
T ss_dssp CHHHHHH
T ss_pred CCCccch
Confidence 8876544
No 302
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=123.01 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=69.1
Q ss_pred ccceeEe--ecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCcee-----CCeEEEEEe
Q 002823 231 NQGTLVV--FNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI-----AGKQIKLEP 303 (876)
Q Consensus 231 ~~~tLfV--~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I-----~Gr~IkVs~ 303 (876)
+..+||| +||+.++++++|+++|++||+|.+|.+. ..||||||+|.+.++|++|++.|||.++ .|++|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4678999 6699999999999999999999999984 4689999999999999999999999998 689999999
Q ss_pred ecC
Q 002823 304 SHL 306 (876)
Q Consensus 304 A~~ 306 (876)
++.
T Consensus 103 a~~ 105 (114)
T 2cq2_A 103 VEK 105 (114)
T ss_dssp ESC
T ss_pred ccc
Confidence 875
No 303
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.36 E-value=5.2e-13 Score=122.50 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=73.6
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCC---eEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~---I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
...+|||+|||.++++++|+++|+.||. |..|++ .+.++|||||+|.+.++|++|++ +++..++|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEE
Confidence 4568999999999999999999999998 888887 35578999999999999999999 999999999999999
Q ss_pred ecCchhHHHH
Q 002823 304 SHLRGLRKCL 313 (876)
Q Consensus 304 A~~k~~Rr~l 313 (876)
+.+++.++.+
T Consensus 89 a~~~~~~~~~ 98 (107)
T 2lmi_A 89 INNEDVDALM 98 (107)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9887765544
No 304
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=1.8e-12 Score=132.75 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=71.8
Q ss_pred ccceeEeecCC-CCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLD-SSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP-~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...+|||+||| ..+++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|||..+.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 35689999999 89999999999999999999999777799999999999999999999999999999999999875
No 305
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.35 E-value=4.6e-13 Score=114.08 Aligned_cols=70 Identities=14% Similarity=0.389 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 149 TLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 149 TLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
+|||+|||+++++++|+++|++||+|..+. .+++++|||||+|.+.++|++|++. ++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999987 2477899999999999999999974 889999999999875
No 306
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.3e-12 Score=114.16 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCce
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 213 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqf----G-------~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~ 213 (876)
.+.++|||+|||+++++++|+++|++| | .|.+++. .+.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 567899999999999999999999999 8 9999986 456999999999999999999 99999999999
Q ss_pred eeEee
Q 002823 214 LDIHY 218 (876)
Q Consensus 214 L~V~~ 218 (876)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 307
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=116.19 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=67.7
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..++|||+|||.++++++|+++|++||.|.+|........||||+|.+.++|.+|++ |+|..|.|++|+|.++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 356999999999999999999999999999985433222299999999999999999 99999999999999887654
No 308
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.34 E-value=1.4e-12 Score=127.45 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...+.++|||+|||.++++++|+++|++||.|+.+..+++++|||||+|.+.++|.+|++.|+|..+.|++|+|.|+.++
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 44567999999999999999999999999999998667889999999999999999999999999999999999999876
No 309
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=4.6e-12 Score=120.68 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=69.4
Q ss_pred CCCcE--EEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccce-EeeecCCHHHHHHHHHHccccccCC--ceeeEeec
Q 002823 145 HPSRT--LLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYS 219 (876)
Q Consensus 145 ~pSrT--LFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGf-AFV~F~d~edA~kAl~~Lng~~l~G--r~L~V~~A 219 (876)
.|+++ |||+||++.+++++|+++|++||.|.+|++..+ .|| |||+|.+.++|++|++.|+|..|.| +.|+|.|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34544 679999999999999999999999999985334 486 9999999999999999999999987 69999999
Q ss_pred CCCCC
Q 002823 220 IPKDN 224 (876)
Q Consensus 220 ~pk~~ 224 (876)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 88764
No 310
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.4e-12 Score=121.37 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=65.5
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeE-----EEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ-----IKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~-----IkVs~A~ 305 (876)
...+|||+|||.++++++|+++|++||+|+.|++... +||||+|.+.++|++||+.|||..|.|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3569999999999999999999999999999998543 99999999999999999999999999998 6666655
Q ss_pred Cc
Q 002823 306 LR 307 (876)
Q Consensus 306 ~k 307 (876)
++
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 53
No 311
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=3.5e-12 Score=111.46 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=66.2
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhc----C-------CeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVY----G-------EIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~f----G-------~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~I 299 (876)
..++|||+|||.++++++|+++|++| | .|.++++ ...++||||+|.+.++|.+|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 46799999999999999999999999 8 9999998 455899999999999999999 999999999999
Q ss_pred EEEe
Q 002823 300 KLEP 303 (876)
Q Consensus 300 kVs~ 303 (876)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 312
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.1e-12 Score=122.87 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|.+|++.|+|..+.|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4566899999999999999999999999999999872 56789999999999999999999999999999999999
Q ss_pred ecCC
Q 002823 218 YSIP 221 (876)
Q Consensus 218 ~A~p 221 (876)
|+.+
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9853
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=128.29 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=72.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEE--------EEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~s--------Vri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
...++|||+|||.++++++|+++|++||.|.. |++ ++..++||||+|.+.++|.+|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34679999999999999999999999999988 665 34568999999999999999999999999999
Q ss_pred eEEEEEeecCchhH
Q 002823 297 KQIKLEPSHLRGLR 310 (876)
Q Consensus 297 r~IkVs~A~~k~~R 310 (876)
++|+|.+++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999886543
No 314
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.8e-12 Score=120.62 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCce-----eeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK-----LDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~-----L~V~~A 219 (876)
...++|||+|||+++++++|+++|++||+|..|.+... |||||+|.+.++|++|++.|+++.|.|++ |+|..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 45689999999999999999999999999999996433 99999999999999999999999999998 667666
Q ss_pred CCCC
Q 002823 220 IPKD 223 (876)
Q Consensus 220 ~pk~ 223 (876)
.++.
T Consensus 92 ~~~~ 95 (115)
T 3beg_B 92 GPRS 95 (115)
T ss_dssp C---
T ss_pred CCCC
Confidence 5543
No 315
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=4.2e-12 Score=122.11 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=71.5
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.++|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999999999887 455679999999999999999999999999999999999987
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 316
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.33 E-value=8.7e-13 Score=127.43 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~---I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
.....++|||+|||+++|+++|+++|++||. |..|+ ..++++|||||+|.+.++|++|++ +++..|.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456789999999999999999999999998 66655 347889999999999999999998 999999999999
Q ss_pred EeecCC
Q 002823 216 IHYSIP 221 (876)
Q Consensus 216 V~~A~p 221 (876)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998754
No 317
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=3.8e-12 Score=118.34 Aligned_cols=76 Identities=12% Similarity=0.216 Sum_probs=68.6
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...+|||+|||.++++++|+++|+.| .|..|++ .++++|||||+|.+.++|++|| .+|+..|.|+.|+|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34699999999999999999999999 8999887 4567899999999999999999 6999999999999998876
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
++
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 318
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.33 E-value=6.5e-13 Score=113.11 Aligned_cols=70 Identities=14% Similarity=0.308 Sum_probs=64.7
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ +++..+.|++|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999887 35568999999999999999999 4899999999999875
No 319
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.33 E-value=6.4e-12 Score=127.69 Aligned_cols=115 Identities=10% Similarity=0.092 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHc--cccccCCceeeEeecCCCCCCCc-----cccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-
Q 002823 193 DIRAARNAMKSL--QNKLTRSGKLDIHYSIPKDNPSE-----KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE- 264 (876)
Q Consensus 193 d~edA~kAl~~L--ng~~l~Gr~L~V~~A~pk~~~~e-----k~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri- 264 (876)
+.+.+..|++.. ....+.+...+|.....+..+.. .....++|||+|||.++++++|+++|++||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 677888888877 55566666666655532222111 2234579999999999999999999999999999987
Q ss_pred ---cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 265 ---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 265 ---tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
++..+|||||+|.+.++|.+|++.++ ..+.|++|+|.+++.-.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 35678999999999999999998654 59999999999987643
No 320
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.33 E-value=2e-12 Score=129.77 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
...++++|||+|||+++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|+|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999884 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 002823 219 SIPK 222 (876)
Q Consensus 219 A~pk 222 (876)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8764
No 321
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=2.6e-12 Score=121.24 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCC
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 222 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk 222 (876)
...++++|||+|| ++++++|+++|++||+|..|+. .+++|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 4467899999996 6999999999999999999987 478999999999999999999999999999999999999876
Q ss_pred CC
Q 002823 223 DN 224 (876)
Q Consensus 223 ~~ 224 (876)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 322
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.32 E-value=4e-12 Score=122.81 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=71.3
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.++|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|+|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 568999999999999999999999999999887 345679999999999999999999999999999999999987
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
+.
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 323
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=1.2e-12 Score=136.62 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccC--CeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYG--DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG--~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..++|||+|||+++|+++|+++|++|| +|+.|+ .++++||||||+|.+.++|++||+.|+++.|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999988 3678999999999999999999999999999999999999
Q ss_pred cCC
Q 002823 219 SIP 221 (876)
Q Consensus 219 A~p 221 (876)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 324
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.2e-12 Score=119.78 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=68.0
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...+|||+|||.++++++|+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 45699999999999999999999999955 7776 55678999999999999999995 799999999999999876
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
.+
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 325
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=4.6e-13 Score=129.83 Aligned_cols=120 Identities=10% Similarity=0.046 Sum_probs=69.5
Q ss_pred ceEeeecCCHHHHHHHHHHccccccCCceeeEeecCCCCCCCccccccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe
Q 002823 185 GFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 264 (876)
Q Consensus 185 GfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~pk~~~~ek~~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri 264 (876)
++||..|..++.+..++..+... ..|....-.+... ..........+|||+|||.++++++|+++|++|| |++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 67788888877777776655433 2332221111111 1111223456999999999999999999999999 668887
Q ss_pred ----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchh
Q 002823 265 ----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 265 ----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~ 309 (876)
.++++|||||+|.+.++|++|| .+|+..|.|+.|+|.++.+++.
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 3457899999999999999999 7999999999999999987653
No 326
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=8.3e-13 Score=121.15 Aligned_cols=79 Identities=8% Similarity=0.009 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCC---eEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~---I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
.....++|||+|||+++|+++|+++|++||. |..|+ ..++++|||||+|.+.++|++|++ +++..+.|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999998 77777 237789999999999999999998 999999999999
Q ss_pred EeecCCC
Q 002823 216 IHYSIPK 222 (876)
Q Consensus 216 V~~A~pk 222 (876)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998653
No 327
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=2e-12 Score=116.91 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=70.8
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
...++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++ ++..+.|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45679999999999999999999999999999887 45578999999999999999999 9999999999999998
Q ss_pred Cchh
Q 002823 306 LRGL 309 (876)
Q Consensus 306 ~k~~ 309 (876)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7653
No 328
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.31 E-value=4.4e-12 Score=127.72 Aligned_cols=81 Identities=17% Similarity=0.365 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|.+|++.|++..|.|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999883 5678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 002823 220 IPKDNP 225 (876)
Q Consensus 220 ~pk~~~ 225 (876)
.++...
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 887544
No 329
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=2.5e-12 Score=121.25 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=70.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchhH
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 310 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~R 310 (876)
...+|||+|+ ++++++|+++|++||.|.+|++ ...+|||||+|.+.++|.+|++.|+|..|.|++|+|.|++++..+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 4679999996 6999999999999999999998 478999999999999999999999999999999999999987654
Q ss_pred H
Q 002823 311 K 311 (876)
Q Consensus 311 r 311 (876)
+
T Consensus 115 ~ 115 (121)
T 2bz2_A 115 D 115 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 330
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.31 E-value=6.2e-12 Score=128.41 Aligned_cols=109 Identities=23% Similarity=0.236 Sum_probs=89.2
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 305 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~ 305 (876)
+.++|||+|||.++++++|+++|++||+|++|++ ++.++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4679999999999999999999999999999887 46678999999999999999999999999999999999998
Q ss_pred CchhHHHHhhcCCchhhhhhcCCCCCCCCCCCCCCCCcccceeeeccCchhhhHHHHHHhhccc
Q 002823 306 LRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGMITIVISLPLNVKSLAIIYLFTGA 369 (876)
Q Consensus 306 ~k~~Rr~l~qQ~~~q~~q~~~g~~~~gsp~~~sp~~~~~~~~~~~fssP~n~~~~~l~~l~~~~ 369 (876)
........ . . .....-+.|.++....|..+|...
T Consensus 94 ~~~~~~~~--~--------~--------------------~~l~v~nl~~~~t~~~l~~~F~~~ 127 (213)
T 4f02_A 94 RDPSLRKS--G--------V--------------------GNIFIKNLDKSIDNKALYDTFSAF 127 (213)
T ss_dssp CCTHHHHH--C--------T--------------------TEEEEESCCTTCCHHHHHHHHGGG
T ss_pred cccccccc--c--------c--------------------ccceECCcccccHHHHHHHHHhhc
Confidence 76533211 0 0 012334677777788888888764
No 331
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.1e-12 Score=116.23 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=64.4
Q ss_pred ceeEeecCCCCCcHHH----HHHHhhhc-CCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 233 GTLVVFNLDSSVSNDE----LHHIFGVY-GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 233 ~tLfV~NLP~svTeed----LreiFs~f-G~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
+.|||+|||..+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+|.|++.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 3499999999999988 55899999 599998 33 99999999999999999999999999999999999875
Q ss_pred h
Q 002823 308 G 308 (876)
Q Consensus 308 ~ 308 (876)
.
T Consensus 85 s 85 (96)
T 2diu_A 85 R 85 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 332
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.1e-12 Score=115.60 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=66.5
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCchh
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 309 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~~ 309 (876)
..++|||+|||.++++++|+++|++||.|.+|++...++|||||+|.+.++|++|+.. ...+.|++|+|.+++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 3579999999999999999999999999999999767899999999999999864321 3445899999999988653
No 333
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=120.62 Aligned_cols=75 Identities=7% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
...++|||+|||+++++++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.||.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345899999999999999999999999 8888873 4778999999999999999999 699999999999998775
Q ss_pred C
Q 002823 221 P 221 (876)
Q Consensus 221 p 221 (876)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 334
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=5.1e-12 Score=126.86 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=72.5
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...+|||+|||..+++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+|+..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4579999999999999999999999999999988 355789999999999999999999999999999999999987
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 335
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=122.99 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=71.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCe----EEEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEI----KEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I----~sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs 302 (876)
...+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..|.|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35689999999999999999999999976 45655 566789999999999999999996 9999999999999
Q ss_pred eecCchhHHHH
Q 002823 303 PSHLRGLRKCL 313 (876)
Q Consensus 303 ~A~~k~~Rr~l 313 (876)
.+.+++.++.+
T Consensus 101 ~a~~~e~~~~~ 111 (123)
T 2dha_A 101 RSTAAEVQQVL 111 (123)
T ss_dssp EECHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99887766544
No 336
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.29 E-value=6e-12 Score=125.07 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 366799999999999999999999999999999882 667799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002823 219 SIPKDN 224 (876)
Q Consensus 219 A~pk~~ 224 (876)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988654
No 337
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.28 E-value=1.7e-12 Score=125.85 Aligned_cols=80 Identities=9% Similarity=0.143 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
.....++|||+|||+++|+++|+++|++|| |..|+ ..++++|||||+|.+.++|++|+ .+++..|.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 55777 34778999999999999999999 8999999999999999
Q ss_pred cCCCCC
Q 002823 219 SIPKDN 224 (876)
Q Consensus 219 A~pk~~ 224 (876)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 338
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=3.9e-12 Score=123.04 Aligned_cols=78 Identities=15% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.+.++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++ +++..+.|++|.|.|+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 4568999999999999999999999999999998 257789999999999999999997 8999999999999999
Q ss_pred CCCC
Q 002823 220 IPKD 223 (876)
Q Consensus 220 ~pk~ 223 (876)
.|+.
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8863
No 339
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.9e-12 Score=115.21 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=62.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-----eC---CCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RA---SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-----~t---gksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
...+++|||+|||+++++++|+++|++||+|. +. .+ ++++|||||+|.+.++|++|++.|++ +.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 35578999999999999999999999999999 55 12 58899999999999999999999843 6777776
Q ss_pred EeecC
Q 002823 216 IHYSI 220 (876)
Q Consensus 216 V~~A~ 220 (876)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66543
No 340
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.8e-11 Score=113.24 Aligned_cols=83 Identities=11% Similarity=0.253 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEe-CCCccceEeeecCCHHHHHHHHHHccccccC
Q 002823 143 DEHPSRTLLLRKINSNIE-----------DSELKALFEQYGDVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vT-----------EeeL~elFsqfG~I~sV~~-tgksrGfAFV~F~d~edA~kAl~~Lng~~l~ 210 (876)
...++++|+|+||....+ +++|+++|++||.|..|.+ ...++|||||+|.+.++|++|++.|+|..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 557899999999944332 5899999999999999874 4557999999999999999999999999999
Q ss_pred CceeeEeecCCCCCC
Q 002823 211 SGKLDIHYSIPKDNP 225 (876)
Q Consensus 211 Gr~L~V~~A~pk~~~ 225 (876)
|++|+|.|+.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999886543
No 341
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.26 E-value=9.1e-12 Score=121.02 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
....++|||+|||.++++++|+++|++||+|..++. +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 345789999999999999999999999999999883 677899999999999999999999999999999999998
Q ss_pred c
Q 002823 219 S 219 (876)
Q Consensus 219 A 219 (876)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 342
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.26 E-value=4.4e-12 Score=121.11 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=67.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeE--EEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVR--TFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~--sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
.....++|||+|||+++|+++|+++|++| .|. .|+ ..++++|||||+|.+.++|++|++. ++..|.||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567899999999999999999999999 566 777 3478899999999999999999974 779999999999
Q ss_pred eecCC
Q 002823 217 HYSIP 221 (876)
Q Consensus 217 ~~A~p 221 (876)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 343
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=1.2e-11 Score=120.02 Aligned_cols=78 Identities=14% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEE----eCCCccceEeeecCCHHHHHHHHHHccccccC---Cceee
Q 002823 143 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLD 215 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~---Gr~L~ 215 (876)
...+.++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|+|..+. +++|.
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 445678999999999999999999999999999988 34667999999999999999999999998776 49999
Q ss_pred EeecC
Q 002823 216 IHYSI 220 (876)
Q Consensus 216 V~~A~ 220 (876)
|.|+.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 344
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.2e-12 Score=121.44 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCe----EEEE----eCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDV----RTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I----~sV~----~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
...++|||+|||+++|+++|+++|++||.| ..|+ .+++++|||||+|.+.++|++|++. ++..+.+|.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 3443 4678999999999999999999986 999999999999
Q ss_pred eecCC
Q 002823 217 HYSIP 221 (876)
Q Consensus 217 ~~A~p 221 (876)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87643
No 345
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=2e-11 Score=121.15 Aligned_cols=113 Identities=11% Similarity=0.124 Sum_probs=86.2
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...++|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 45679999999999999999999999999999887 355789999999999999999985 999999999999999
Q ss_pred cCchhHHHHhhcCCchhhhhhcCCCCCCCCCCCCCCCCcccceeeeccCchhhhHHHHHHhhccc
Q 002823 305 HLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGMITIVISLPLNVKSLAIIYLFTGA 369 (876)
Q Consensus 305 ~~k~~Rr~l~qQ~~~q~~q~~~g~~~~gsp~~~sp~~~~~~~~~~~fssP~n~~~~~l~~l~~~~ 369 (876)
..+.....- ... .....-..-+.|.++....|..+|...
T Consensus 90 ~~~~~~~~~---------------------~~~-----~~~~~l~V~nLp~~~t~~~l~~~F~~~ 128 (196)
T 1l3k_A 90 VSREDSQRP---------------------GAH-----LTVKKIFVGGIKEDTEEHHLRDYFEQY 128 (196)
T ss_dssp CC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTT
T ss_pred cCccccccc---------------------ccC-----CCcceEEEeCCCCCCCHHHHHHHHhcC
Confidence 875422100 000 001122345678888888888888654
No 346
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=1.2e-11 Score=130.25 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=70.7
Q ss_pred ccccceeEeecCCCCC---------cHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCcee-----
Q 002823 229 EINQGTLVVFNLDSSV---------SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI----- 294 (876)
Q Consensus 229 ~~~~~tLfV~NLP~sv---------TeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I----- 294 (876)
....++|||+||+..+ ++++|+++|++||+|++|++. ..+|||||+|.+.++|++|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 3456799999999998 799999999999999999984 5799999999999999999999999999
Q ss_pred -------CCeEEEEEeecCchh
Q 002823 295 -------AGKQIKLEPSHLRGL 309 (876)
Q Consensus 295 -------~Gr~IkVs~A~~k~~ 309 (876)
.|++|.|.|++....
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=8.4e-12 Score=131.42 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcccccc-----
Q 002823 144 EHPSRTLLLRKINSNI---------EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT----- 209 (876)
Q Consensus 144 e~pSrTLFVgNLP~~v---------TEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l----- 209 (876)
....++|||+||+..+ ++++|+++|++||+|.+|++ ..++|||||+|.+.++|+.|+++|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 5678999999999998 79999999999999999986 35799999999999999999999999999
Q ss_pred -------CCceeeEeecCCCCCC
Q 002823 210 -------RSGKLDIHYSIPKDNP 225 (876)
Q Consensus 210 -------~Gr~L~V~~A~pk~~~ 225 (876)
.|+.|.|.|+..+.++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876554
No 348
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.24 E-value=1.6e-11 Score=139.70 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEee
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 218 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~-----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~ 218 (876)
..+.++|||+|||..+|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||+.|+|..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999873 677899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002823 219 SIPKDN 224 (876)
Q Consensus 219 A~pk~~ 224 (876)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987643
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.23 E-value=6.3e-12 Score=120.04 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=67.5
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeE--EEEe----cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEee
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIK--EIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 304 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~--sVri----tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A 304 (876)
...+|||+|||+++++++|+++|+.| .|+ .|++ .++++|||||+|.+.++|++||+ +++..|.|+.|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 45689999999999999999999999 666 7877 35678999999999999999998 4789999999999998
Q ss_pred cCch
Q 002823 305 HLRG 308 (876)
Q Consensus 305 ~~k~ 308 (876)
.+++
T Consensus 119 ~~~e 122 (126)
T 2hgm_A 119 SQEE 122 (126)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 350
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.23 E-value=3.5e-11 Score=120.34 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccC-CceeeEeecCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSIP 221 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG-~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~-Gr~L~V~~A~p 221 (876)
..++++|||+|||.++++++|+++|++|| .|..++.....+|||||+|.+.++|.+|++.|+|..+. |++|+|.|+.+
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 35689999999999999999999999999 99999976667999999999999999999999999999 99999999876
Q ss_pred C
Q 002823 222 K 222 (876)
Q Consensus 222 k 222 (876)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 351
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.22 E-value=2.6e-11 Score=127.94 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=72.8
Q ss_pred cccceeEeecCCCCCcHHHHH----HHhhhcCCeEEEEe--cCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 230 INQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLr----eiFs~fG~I~sVri--tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
...++|||+|||.++++++|+ ++|++||.|.+|++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 357799999999999999977 89999999999987 567889999999999999999999999999999999999
Q ss_pred ecCch
Q 002823 304 SHLRG 308 (876)
Q Consensus 304 A~~k~ 308 (876)
++.+.
T Consensus 87 a~~~~ 91 (282)
T 3pgw_A 87 AKTDS 91 (282)
T ss_pred eccCc
Confidence 97654
No 352
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.22 E-value=3e-11 Score=127.17 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=71.3
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
...++|||+|||.++|+++|+++|+.||.|..|++ ...+|||||+|.+.++|.+|+..|+|..+.|++|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 45679999999999999999999999999999998 55689999999999999999999999999999999999874
No 353
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.22 E-value=2.7e-11 Score=124.98 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccC-CceeeEeecCC
Q 002823 144 EHPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSIP 221 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vTEeeL~elFsqfG-~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~-Gr~L~V~~A~p 221 (876)
..++++|||+|||.++++++|+++|++|| .|..++...+.+|||||+|.+.++|++|++.|+|..+. |++|+|.|+.+
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 35679999999999999999999999999 99999976667999999999999999999999999999 99999999976
Q ss_pred C
Q 002823 222 K 222 (876)
Q Consensus 222 k 222 (876)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.1e-11 Score=110.22 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=69.4
Q ss_pred cccceeEeecCCCCCc-----------HHHHHHHhhhcCCeEEEEe-cCCcccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 002823 230 INQGTLVVFNLDSSVS-----------NDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 297 (876)
Q Consensus 230 ~~~~tLfV~NLP~svT-----------eedLreiFs~fG~I~sVri-tg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr 297 (876)
...++|+|.||..... +++|+++|++||.|.+|.+ +..++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4577999999954432 5899999999999999876 445789999999999999999999999999999
Q ss_pred EEEEEeecCch
Q 002823 298 QIKLEPSHLRG 308 (876)
Q Consensus 298 ~IkVs~A~~k~ 308 (876)
+|+|.|+.++.
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998754
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.19 E-value=5.7e-11 Score=109.62 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=68.0
Q ss_pred ccceeEeecCCC-----CCcHHHHHHHhhhcCCeEEEEec------CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 002823 231 NQGTLVVFNLDS-----SVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (876)
Q Consensus 231 ~~~tLfV~NLP~-----svTeedLreiFs~fG~I~sVrit------g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~I 299 (876)
++++|+|.|+.. +-++++|+++|++||+|.+|++. +.++|+|||+|.+.++|.+|++.|||+.+.||+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467999999963 23789999999999999998872 3568999999999999999999999999999999
Q ss_pred EEEeecCch
Q 002823 300 KLEPSHLRG 308 (876)
Q Consensus 300 kVs~A~~k~ 308 (876)
+|.++....
T Consensus 87 ~v~~a~~~~ 95 (105)
T 2pe8_A 87 KACFYNLDK 95 (105)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCHHH
Confidence 999997643
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.19 E-value=3.4e-11 Score=111.15 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEe------CCCccceEeeecCCHHHHHHHHHHccccccCCc
Q 002823 144 EHPSRTLLLRKINS-----NIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (876)
Q Consensus 144 e~pSrTLFVgNLP~-----~vTEeeL~elFsqfG~I~sV~~------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr 212 (876)
..++++|+|+||.. +-++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|+.+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 36789999999963 2368999999999999999983 246799999999999999999999999999999
Q ss_pred eeeEeecCC
Q 002823 213 KLDIHYSIP 221 (876)
Q Consensus 213 ~L~V~~A~p 221 (876)
.|.|.|+.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.4e-11 Score=111.57 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=64.2
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-----c---CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----T---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 302 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-----t---g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs 302 (876)
..++|||+|||.++++++|+++|++||+|. +++ + +.++|||||+|.+.++|++|++.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 665 1 4678999999999999999999994 4778888877
Q ss_pred eecCch
Q 002823 303 PSHLRG 308 (876)
Q Consensus 303 ~A~~k~ 308 (876)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 665543
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3.1e-11 Score=115.63 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=69.1
Q ss_pred ceeEeecC----CCCCcHHHHHHHhhhcCCeEEEEe-----cCCcccEEEEEecC----HHH----HHHHHH--HhCCce
Q 002823 233 GTLVVFNL----DSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYD----TRA----AEAALR--ELNSRY 293 (876)
Q Consensus 233 ~tLfV~NL----P~svTeedLreiFs~fG~I~sVri-----tg~skG~AFVeF~d----~E~----A~kAL~--~LnG~~ 293 (876)
.+|||+|| |+.+++++|+++|+.||+|.++++ ++.++|||||+|.+ +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999887 77889999999996 333 889988 789999
Q ss_pred eCCeEEEEEeecCchhHH
Q 002823 294 IAGKQIKLEPSHLRGLRK 311 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~~Rr 311 (876)
|.|++|+|.+-+.....+
T Consensus 83 I~Gr~irV~ln~~g~~~~ 100 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNN 100 (136)
T ss_dssp ETTEEEEEEECCTTHHHH
T ss_pred ecCcEEEEEECcccHHHH
Confidence 999999999988766544
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.12 E-value=9.8e-11 Score=118.96 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
..++|||+|||+++++++|+++|++||.|..|+. +++++|||||+|.+.++|++|++.+ +..+.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999983 4678999999999999999999765 4589999999998654
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.10 E-value=5.7e-11 Score=113.84 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=64.7
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhccCCeEEEE-----eCCCccceEeeecCC----HHH----HHHHHH--Hccccc
Q 002823 148 RTLLLRKI----NSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYD----IRA----ARNAMK--SLQNKL 208 (876)
Q Consensus 148 rTLFVgNL----P~~vTEeeL~elFsqfG~I~sV~-----~tgksrGfAFV~F~d----~ed----A~kAl~--~Lng~~ 208 (876)
.+|||+|| |+.+++++|+++|++||+|.++. .+++++|||||+|.+ +++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999988 588999999999996 333 889988 789999
Q ss_pred cCCceeeEeec
Q 002823 209 TRSGKLDIHYS 219 (876)
Q Consensus 209 l~Gr~L~V~~A 219 (876)
|.|++|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999884
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.09 E-value=1.7e-10 Score=106.31 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEeC-------CCccceEeeecCCHHHHHHHHHHccc
Q 002823 144 EHPSRTLLLRKI--NSNIE--------DSELKALFEQYGDVRTFYRA-------SKHCGFVTISYYDIRAARNAMKSLQN 206 (876)
Q Consensus 144 e~pSrTLFVgNL--P~~vT--------EeeL~elFsqfG~I~sV~~t-------gksrGfAFV~F~d~edA~kAl~~Lng 206 (876)
..|++.|.|+|+ |.++. +++|++.|++||+|.+|++. ++++|+|||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 44544 36899999999999999932 25789999999999999999999999
Q ss_pred cccCCceeeEeecCC
Q 002823 207 KLTRSGKLDIHYSIP 221 (876)
Q Consensus 207 ~~l~Gr~L~V~~A~p 221 (876)
+.+.||.|+|.|+.+
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999753
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.1e-10 Score=105.22 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCch
Q 002823 242 SSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 308 (876)
Q Consensus 242 ~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k~ 308 (876)
..+++++|+++|++||+|.+|++.+.++|||||+|.+.++|++|++.+++ +.|++|+|.|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 57899999999999999999999888999999999999999999998544 689999999998764
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=2.8e-10 Score=104.89 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=66.6
Q ss_pred ccceeEeecC--CCCC--------cHHHHHHHhhhcCCeEEEEec-------CCcccEEEEEecCHHHHHHHHHHhCCce
Q 002823 231 NQGTLVVFNL--DSSV--------SNDELHHIFGVYGEIKEIRET-------PQKIHQKYIEFYDTRAAEAALRELNSRY 293 (876)
Q Consensus 231 ~~~tLfV~NL--P~sv--------TeedLreiFs~fG~I~sVrit-------g~skG~AFVeF~d~E~A~kAL~~LnG~~ 293 (876)
+++.|+|.|+ |..+ .+++|++.|++||+|.+|++. +.++|++||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899998 3333 247899999999999999982 2458999999999999999999999999
Q ss_pred eCCeEEEEEeecCch
Q 002823 294 IAGKQIKLEPSHLRG 308 (876)
Q Consensus 294 I~Gr~IkVs~A~~k~ 308 (876)
+.||+|+|.|+....
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999987643
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=100.19 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=64.4
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeec
Q 002823 147 SRTLLLRKIN-------SNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 219 (876)
Q Consensus 147 SrTLFVgNLP-------~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A 219 (876)
.++|.|.-.. .++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 3455555443 46899999999999999999997789999999999999999999998554 67999999999
Q ss_pred CCCCC
Q 002823 220 IPKDN 224 (876)
Q Consensus 220 ~pk~~ 224 (876)
.++..
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87654
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.01 E-value=1.7e-10 Score=106.04 Aligned_cols=68 Identities=31% Similarity=0.500 Sum_probs=58.7
Q ss_pred eecCCCCCcHHHHHHHh------------hhcCCeEEEEec----CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 237 VFNLDSSVSNDELHHIF------------GVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 237 V~NLP~svTeedLreiF------------s~fG~I~sVrit----g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
+.+|+..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|.+|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777777776666 999999999983 34689999999999999999999999999999999
Q ss_pred EEee
Q 002823 301 LEPS 304 (876)
Q Consensus 301 Vs~A 304 (876)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=6.7e-10 Score=104.74 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCC--CCC---CHHHHHHHhhccCCeEEEEe---------CCCccceEeeecCCHHHHHHHHHHccccccC
Q 002823 145 HPSRTLLLRKIN--SNI---EDSELKALFEQYGDVRTFYR---------ASKHCGFVTISYYDIRAARNAMKSLQNKLTR 210 (876)
Q Consensus 145 ~pSrTLFVgNLP--~~v---TEeeL~elFsqfG~I~sV~~---------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~ 210 (876)
.|+++|+|+|+- .++ -+++|++.|++||+|.+|++ +++++|+|||+|.+.++|.+|++.|+|+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 479999999993 222 26899999999999999882 2356799999999999999999999999999
Q ss_pred CceeeEeecC
Q 002823 211 SGKLDIHYSI 220 (876)
Q Consensus 211 Gr~L~V~~A~ 220 (876)
||.|+|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999974
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=5.2e-10 Score=123.50 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccC---Cc--eee
Q 002823 143 DEHPSRTLLLRK--INSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR---SG--KLD 215 (876)
Q Consensus 143 ~e~pSrTLFVgN--LP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~---Gr--~L~ 215 (876)
...|+++|||+| |+..+|+++|+++|++||+|.+|++. .+||||||+|.+.++|++|++.|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 357899999999 57899999999999999999999863 47899999999999999999999999873 44 577
Q ss_pred Eeec
Q 002823 216 IHYS 219 (876)
Q Consensus 216 V~~A 219 (876)
|.|+
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7776
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=1e-09 Score=121.22 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=66.4
Q ss_pred cccceeEeec--CCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeC---Ce--EEEEE
Q 002823 230 INQGTLVVFN--LDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA---GK--QIKLE 302 (876)
Q Consensus 230 ~~~~tLfV~N--LP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~---Gr--~IkVs 302 (876)
.++.+|||+| |+..+|+++|+++|++||+|++|++. ..||||||+|.+.++|++|++.|||+.+. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 4577999999 57899999999999999999999884 47899999999999999999999999883 44 68888
Q ss_pred eec
Q 002823 303 PSH 305 (876)
Q Consensus 303 ~A~ 305 (876)
|..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.95 E-value=2.4e-10 Score=105.11 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=59.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEe----CCCccceEeeecCCHHHHHHHHHHccccccCCceee
Q 002823 152 LRKINSNIEDSELKALF------------EQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 215 (876)
Q Consensus 152 VgNLP~~vTEeeL~elF------------sqfG~I~sV~~----tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~ 215 (876)
+.+||..+++++|++.| ++||+|.+|++ .++++|||||+|.+.++|++|++.|+|+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777888777666 99999999994 345799999999999999999999999999999999
Q ss_pred Eeec
Q 002823 216 IHYS 219 (876)
Q Consensus 216 V~~A 219 (876)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=2.9e-09 Score=99.87 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=67.0
Q ss_pred ccceeEeecCCCCC----------cHHHHHHHhhhcCCeEEEEecC-CcccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 002823 231 NQGTLVVFNLDSSV----------SNDELHHIFGVYGEIKEIRETP-QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 299 (876)
Q Consensus 231 ~~~tLfV~NLP~sv----------TeedLreiFs~fG~I~sVritg-~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~I 299 (876)
+++.|.+.|+=..- -++||++.|++||.|.+|.+.. ..+|++||+|.+.++|.+|++.|||+.+.||+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45678888874321 2368999999999999999833 358999999999999999999999999999999
Q ss_pred EEEeecCchhHH
Q 002823 300 KLEPSHLRGLRK 311 (876)
Q Consensus 300 kVs~A~~k~~Rr 311 (876)
+|.|+....-.+
T Consensus 86 ~v~~~~~~~y~~ 97 (114)
T 3s6e_A 86 TAAYVPLPTYHN 97 (114)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEEcHHHHHH
Confidence 999997655433
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.92 E-value=2.7e-09 Score=100.63 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=65.6
Q ss_pred ccceeEeecCCC--C---CcHHHHHHHhhhcCCeEEEEec---------CCcccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 231 NQGTLVVFNLDS--S---VSNDELHHIFGVYGEIKEIRET---------PQKIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 231 ~~~tLfV~NLP~--s---vTeedLreiFs~fG~I~sVrit---------g~skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
++++|+|.|+-. + --++||++.|++||+|.+|++. +..+|++||+|.+.++|.+|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999842 1 2468999999999999998872 1346999999999999999999999999999
Q ss_pred eEEEEEeecCc
Q 002823 297 KQIKLEPSHLR 307 (876)
Q Consensus 297 r~IkVs~A~~k 307 (876)
|+|+|.|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998753
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.84 E-value=6.7e-09 Score=97.36 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=65.5
Q ss_pred CCCCcEEEEcCCCCCCC----------HHHHHHHhhccCCeEEEEeCC-CccceEeeecCCHHHHHHHHHHccccccCCc
Q 002823 144 EHPSRTLLLRKINSNIE----------DSELKALFEQYGDVRTFYRAS-KHCGFVTISYYDIRAARNAMKSLQNKLTRSG 212 (876)
Q Consensus 144 e~pSrTLFVgNLP~~vT----------EeeL~elFsqfG~I~sV~~tg-ksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr 212 (876)
..|++.|.+.|+=..-. +++|++.|++||.|.+|++.. ..+|+|||+|.+.++|++|++.|+|+.+.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 46789999999833221 357889999999999998533 3589999999999999999999999999999
Q ss_pred eeeEeecC
Q 002823 213 KLDIHYSI 220 (876)
Q Consensus 213 ~L~V~~A~ 220 (876)
.|+|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999974
No 373
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.76 E-value=1.6e-08 Score=91.43 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=72.3
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcccEE-Eeccccccc-ceeEEEEEecCCccchHHHHHHhcCccccCCC-CccE
Q 002823 706 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFI-YLPIDFKNK-CNVGYAFINMTDPSQIVPFYQSFNGKKWEKFN-SEKV 782 (876)
Q Consensus 706 TTvMirNIPnk~t~~~L~~~ide~~~g~yDF~-Ylp~Df~~~-~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~-s~Kv 782 (876)
|.|.||++|..+|++.+++.|... .++||+ |.|-+...+ +-.+.|||||.+++++..|.+.|+|+.|...+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 789999999999999999999975 378988 568777654 45688999999999999999999999998764 3455
Q ss_pred EEEEeeccc
Q 002823 783 ASLAYARIQ 791 (876)
Q Consensus 783 ~~v~yA~iQ 791 (876)
+.|.||-.|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999887
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=6e-08 Score=87.43 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=62.8
Q ss_pred cccceeEeecCCC----CCcH----HHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 002823 230 INQGTLVVFNLDS----SVSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 301 (876)
Q Consensus 230 ~~~~tLfV~NLP~----svTe----edLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkV 301 (876)
++..||+|.-.+. .+-. .+|.+.|.+||+|..+|+.. +.+||+|.+.++|.+|++ |||..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 3456888887762 3333 67999999999999999943 339999999999999999 9999999999999
Q ss_pred EeecCch
Q 002823 302 EPSHLRG 308 (876)
Q Consensus 302 s~A~~k~ 308 (876)
.++++.-
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9998753
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1.1e-07 Score=90.31 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=70.8
Q ss_pred ccceeEeecCCCC-CcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecC-HHHHHHHHHHhC--CceeCCeEEEEEeecC
Q 002823 231 NQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYD-TRAAEAALRELN--SRYIAGKQIKLEPSHL 306 (876)
Q Consensus 231 ~~~tLfV~NLP~s-vTeedLreiFs~fG~I~sVritg~skG~AFVeF~d-~E~A~kAL~~Ln--G~~I~Gr~IkVs~A~~ 306 (876)
....|||+||+.. ++.++|+++|++||+|.+|.+.. ....|||+|.+ .++|.+|++.|+ +..|.|..++++....
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~-g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 3458999999999 99999999999999999999843 34479999999 899999999995 7889999999999887
Q ss_pred chhHH
Q 002823 307 RGLRK 311 (876)
Q Consensus 307 k~~Rr 311 (876)
.++++
T Consensus 96 eeE~~ 100 (121)
T 1owx_A 96 EVEKE 100 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 376
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.58 E-value=2e-08 Score=91.48 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=70.9
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEE-Eecccccccc-eeEEEEEecCCccchHHHHHHhcCccccCCCC-cc
Q 002823 705 RTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFI-YLPIDFKNKC-NVGYAFINMTDPSQIVPFYQSFNGKKWEKFNS-EK 781 (876)
Q Consensus 705 rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~-Ylp~Df~~~~-N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s-~K 781 (876)
--.|+||++|+.+|++.+++.|+.... .||+ |.|-|...+- -...|||||++++++..|.+.|+|+.|...+. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 347999999999999999999987543 5777 6788877644 44789999999999999999999999997654 44
Q ss_pred EEEEEeeccc
Q 002823 782 VASLAYARIQ 791 (876)
Q Consensus 782 v~~v~yA~iQ 791 (876)
.+.|.||-.|
T Consensus 87 ~a~VE~APyq 96 (97)
T 2l08_A 87 PAVVEFAPFQ 96 (97)
T ss_dssp EEEEEECCCC
T ss_pred eeEEEecCCC
Confidence 5889999887
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=3.3e-07 Score=83.13 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=61.6
Q ss_pred cccceeEeecCCCC-----CcH----HHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 002823 230 INQGTLVVFNLDSS-----VSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 300 (876)
Q Consensus 230 ~~~~tLfV~NLP~s-----vTe----edLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~Ik 300 (876)
++..||+|.-++.+ +-. .+|.+.|..||+|..+|+.... +||+|.+.++|.+||+ |||.++.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45679999988743 222 5699999999999999984333 9999999999999998 999999999999
Q ss_pred EEeecC
Q 002823 301 LEPSHL 306 (876)
Q Consensus 301 Vs~A~~ 306 (876)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998754
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=3.5e-07 Score=82.43 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeE
Q 002823 145 HPSRTLLLRKINS----NIED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 216 (876)
Q Consensus 145 ~pSrTLFVgNLP~----~vTE----eeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V 216 (876)
.|..||+|.-.+. ++-+ .+|.+.|.+||+|..++... +.+||+|.+.++|.+|++ |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 5667999988772 3434 67889999999999999532 339999999999999997 9999999999999
Q ss_pred eecCCC
Q 002823 217 HYSIPK 222 (876)
Q Consensus 217 ~~A~pk 222 (876)
+++.|.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998764
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=9.4e-07 Score=83.82 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeCCCccceEeeecCC-HHHHHHHHHHcc--ccccCCceeeEee
Q 002823 143 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYD-IRAARNAMKSLQ--NKLTRSGKLDIHY 218 (876)
Q Consensus 143 ~e~pSrTLFVgNLP~~-vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d-~edA~kAl~~Ln--g~~l~Gr~L~V~~ 218 (876)
.-.+...|||+||+.+ +++++|+++|++||+|..|.. .+....|||.|.+ .++|.+|++.++ +..|.+..+.++.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 3466789999999999 999999999999999999985 2333479999999 899999999995 6778888777765
Q ss_pred c
Q 002823 219 S 219 (876)
Q Consensus 219 A 219 (876)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.27 E-value=1.2e-06 Score=89.85 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=58.1
Q ss_pred CCcHHHHHHHhhhcCCeEEEEec---------CCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecCc
Q 002823 243 SVSNDELHHIFGVYGEIKEIRET---------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 307 (876)
Q Consensus 243 svTeedLreiFs~fG~I~sVrit---------g~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~k 307 (876)
.-.+++|++.|++||+|.+|++. +..+|++||+|.+.++|.+|++.|||+.+.||+|++.|+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 34678999999999999998872 267899999999999999999999999999999999998654
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=2.9e-06 Score=76.95 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCcee
Q 002823 144 EHPSRTLLLRKINSN-----IED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 214 (876)
Q Consensus 144 e~pSrTLFVgNLP~~-----vTE----eeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L 214 (876)
..|..||+|.-++.. +-+ .+|.+.|.+||.|..++.... -+||+|.+.++|.+|++ |+|+.+.||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 356789999998753 222 568899999999999884222 29999999999999998 99999999999
Q ss_pred eEeecC
Q 002823 215 DIHYSI 220 (876)
Q Consensus 215 ~V~~A~ 220 (876)
+|++..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998753
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.13 E-value=2.9e-06 Score=86.84 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=55.9
Q ss_pred CCHHHHHHHhhccCCeEEEEe---------CCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 159 IEDSELKALFEQYGDVRTFYR---------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 159 vTEeeL~elFsqfG~I~sV~~---------tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
-.+++|++.|++||.|.++++ +++++|++||+|.+.++|++|++.|+|+.+.||.|.+.|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 346889999999999999983 23789999999999999999999999999999999999974
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00012 Score=67.90 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=64.6
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhc-----CCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVY-----GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 303 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~f-----G~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~ 303 (876)
.++|-+-|||..+++..|+.+.++| |.|+.|.+.+. -+-|+|+|.|...|.+|.-+|+|.+|.|++|+|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5689999999999999999999999 99999888554 34699999999999999999999999999999864
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00027 Score=65.69 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEe
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQY-----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 217 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqf-----G~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~ 217 (876)
...++|-+-|||..+++..|+.+.++| |+|+.+.. ....+-|+|+|.|...|-+|.-+|+|..|.||+|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L-~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILL-VSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEE-ETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEE-ecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 346899999999999999999999999 99999985 3345679999999999999999999999999999983
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.0017 Score=59.75 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-c----CCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecC
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQ-Y----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 220 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsq-f----G~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~ 220 (876)
..++|.|.|||++++++.|.-+|+. - |+|..+.... +-|+|+|.+.+.|++.++. ....|.+..|.|.-..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 3579999999999999999999996 2 5999998644 7899999999999999853 3567889999997655
Q ss_pred CCCCCCccccccceeEeecCCCCCc
Q 002823 221 PKDNPSEKEINQGTLVVFNLDSSVS 245 (876)
Q Consensus 221 pk~~~~ek~~~~~tLfV~NLP~svT 245 (876)
+++ ..+|++.+|++.++
T Consensus 83 ~~~--------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PRA--------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCSCCCCCC
T ss_pred CCC--------cceEeeecCCCCCC
Confidence 443 45799999998765
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.78 E-value=0.0048 Score=56.72 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=66.2
Q ss_pred cceeEeecCCCCCcHHHHHHHhhh-----cCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGV-----YGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~-----fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
..+|.|.|||+.+.++.|.-+|+. =|+|..|+..+ +-|+|+|.+.+.|++.|+ -....+.+.+|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 468999999999999999999986 26788898755 789999999999999987 236788899999999888
Q ss_pred chhHHHH
Q 002823 307 RGLRKCL 313 (876)
Q Consensus 307 k~~Rr~l 313 (876)
+..+|.+
T Consensus 84 ~~~~r~l 90 (104)
T 2dhx_A 84 RAPARLL 90 (104)
T ss_dssp CCCCCCC
T ss_pred CCcceEe
Confidence 8766644
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.0021 Score=59.27 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=63.4
Q ss_pred CcEEEEcCCCCCC-CH----HHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCCceeeEeecCC
Q 002823 147 SRTLLLRKINSNI-ED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 221 (876)
Q Consensus 147 SrTLFVgNLP~~v-TE----eeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~Gr~L~V~~A~p 221 (876)
..+|+|.||+.+| .. +.++++|..|+++.+... -++-.-..|.|.++++|.+|...|++..+.|++|+|-|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3689999999876 32 567899999999888663 34444679999999999999999999999999999999875
Q ss_pred CC
Q 002823 222 KD 223 (876)
Q Consensus 222 k~ 223 (876)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0022 Score=59.16 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=62.9
Q ss_pred cceeEeecCCCCC-c----HHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeecC
Q 002823 232 QGTLVVFNLDSSV-S----NDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 306 (876)
Q Consensus 232 ~~tLfV~NLP~sv-T----eedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~Gr~IkVs~A~~ 306 (876)
.++|+|.||+.++ . .+.++++|..|+++.....-+.-| -..|.|.+.++|.+|...|++..+.|++++|-|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4589999998765 2 257789999999988866533223 578999999999999999999999999999999985
Q ss_pred ch
Q 002823 307 RG 308 (876)
Q Consensus 307 k~ 308 (876)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.32 E-value=0.017 Score=54.49 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=63.9
Q ss_pred cccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCCceeCC-eEEEEEeecCch
Q 002823 230 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-KQIKLEPSHLRG 308 (876)
Q Consensus 230 ~~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG~~I~G-r~IkVs~A~~k~ 308 (876)
.....|.|.+.|+.. ...|.+.|++||+|.+... .....+-.|+|.++.+|++||. .||..|.| -.|-|.+...+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCHH
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCHH
Confidence 346689999999885 6778889999999999887 5567899999999999999998 69999985 777788776554
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.68 E-value=0.043 Score=49.37 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=53.3
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-cCC------cccEEEEEecCHHHHHHHHHHhCCceeCC
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQ------KIHQKYIEFYDTRAAEAALRELNSRYIAG 296 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVri-tg~------skG~AFVeF~d~E~A~kAL~~LnG~~I~G 296 (876)
.+|.|++||+.+|++++.+.++...++..... .++ .-.-|+|.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 36999999999999999999999988766554 121 22469999999999999999999998854
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.78 E-value=0.088 Score=48.02 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=44.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcc
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 205 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Ln 205 (876)
.+.++| ++|+.+...||.++|+.||.|.--.+ .-..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 356677 99999999999999999985433222 23479999999999999998764
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.97 E-value=0.14 Score=48.28 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHccccccCC-ceeeEeec
Q 002823 146 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-GKLDIHYS 219 (876)
Q Consensus 146 pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Lng~~l~G-r~L~V~~A 219 (876)
..+-|.|-+.|+.. ...|...|++||.|.+... .....+..|.|.++.+|++||. .||+.+.+ -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35789999999884 6778889999999999886 3456899999999999999995 59988874 45555543
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.32 E-value=0.19 Score=45.87 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=43.3
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhC
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 290 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~Ln 290 (876)
.++| +.|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|++.+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999996543333 24589999999999999999763
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.63 E-value=0.051 Score=62.19 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=43.9
Q ss_pred ccceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHH
Q 002823 231 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALR 287 (876)
Q Consensus 231 ~~~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~ 287 (876)
..++|+|. .|..+++.+|.+.|++||.|..+........||.|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45689997 799999999999999999999988877777899999999999997765
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.42 E-value=0.21 Score=45.53 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=54.1
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEEEEe-cCC------cccEEEEEecCHHHHHHHHHHhCCceeCC-----eEE
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQ------KIHQKYIEFYDTRAAEAALRELNSRYIAG-----KQI 299 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~sVri-tg~------skG~AFVeF~d~E~A~kAL~~LnG~~I~G-----r~I 299 (876)
.-+|+|+.||+.+|++++.+.++..-++..... .++ .-.-|+|.|.+.++...-.+..+|..+-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 347999999999999999988887655433222 111 12459999999999999999999988854 344
Q ss_pred EEEee
Q 002823 300 KLEPS 304 (876)
Q Consensus 300 kVs~A 304 (876)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 46655
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.41 E-value=0.05 Score=62.22 Aligned_cols=58 Identities=10% Similarity=0.291 Sum_probs=44.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHH
Q 002823 145 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKS 203 (876)
Q Consensus 145 ~pSrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~ 203 (876)
...|+|||. .|..+++++|.++|++||+|.++.......-||.|+|.+.+++..++..
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 446899998 7999999999999999999999986555567999999999999977643
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.38 E-value=0.13 Score=46.95 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=43.4
Q ss_pred eeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhC
Q 002823 234 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 290 (876)
Q Consensus 234 tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~Ln 290 (876)
.++| +.|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999995543233 24589999999999999999875
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.20 E-value=0.18 Score=48.21 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=57.3
Q ss_pred cceeEeecCCCCCcHHHHHHHhhhcCCeEE-EEec----------------C--CcccEEEEEecCHHHHHHHHHHhCCc
Q 002823 232 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRET----------------P--QKIHQKYIEFYDTRAAEAALRELNSR 292 (876)
Q Consensus 232 ~~tLfV~NLP~svTeedLreiFs~fG~I~s-Vrit----------------g--~skG~AFVeF~d~E~A~kAL~~LnG~ 292 (876)
...|.|.+.|++.+ ..+.+.|++||.|.+ +... + ...++..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34688899977654 567788999999977 2211 1 145788999999999999998 7999
Q ss_pred eeCCeEEEEEeecC
Q 002823 293 YIAGKQIKLEPSHL 306 (876)
Q Consensus 293 ~I~Gr~IkVs~A~~ 306 (876)
.|.|.-|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888998853
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.65 E-value=0.13 Score=46.99 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=43.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 205 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Ln 205 (876)
+.++| ++|+++...||.++|+.||.|.--.+ .-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 35566 99999999999999999994433333 34579999999999999998764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.27 E-value=0.4 Score=45.88 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=53.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eC-------------C-----CccceEeeecCCHHHHHHHHHHccccc
Q 002823 148 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-RA-------------S-----KHCGFVTISYYDIRAARNAMKSLQNKL 208 (876)
Q Consensus 148 rTLFVgNLP~~vTEeeL~elFsqfG~I~sV~-~t-------------g-----ksrGfAFV~F~d~edA~kAl~~Lng~~ 208 (876)
..|.|-+.|+.. ...+.+.|++||.|.+-. .. . ....+..|+|.+..+|++|+. .+|+.
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 467888887654 556778999999997732 10 0 135688999999999999995 69999
Q ss_pred cCCceeeEeec
Q 002823 209 TRSGKLDIHYS 219 (876)
Q Consensus 209 l~Gr~L~V~~A 219 (876)
+.|..|-|...
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777664
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=68.96 E-value=9 Score=44.18 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=46.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhccCCeEEEEeCCCccceEeeecCCHHHHHHHHHHcc
Q 002823 147 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 205 (876)
Q Consensus 147 SrTLFVgNLP~~vTEeeL~elFsqfG~I~sV~~tgksrGfAFV~F~d~edA~kAl~~Ln 205 (876)
...++|+ +|..+...+|.++|+.||.|.-.+. ....|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 4577777 9999999999999999997655444 44579999999999999998875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.73 E-value=12 Score=43.17 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=45.1
Q ss_pred ceeEeecCCCCCcHHHHHHHhhhcCCeEEEEecCCcccEEEEEecCHHHHHHHHHHhCC
Q 002823 233 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 291 (876)
Q Consensus 233 ~tLfV~NLP~svTeedLreiFs~fG~I~sVritg~skG~AFVeF~d~E~A~kAL~~LnG 291 (876)
..++|+ +|..+...+|.+.|+.||.|.-..+ ....|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 366666 9999999999999999997644444 355799999999999999998853
Done!