Query 002824
Match_columns 876
No_of_seqs 221 out of 576
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 03:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.3 7.8E-13 2.7E-17 122.3 6.8 103 212-352 3-108 (111)
2 4gne_A Histone-lysine N-methyl 99.0 2.8E-10 9.6E-15 105.8 6.0 77 213-318 12-89 (107)
3 2kwj_A Zinc finger protein DPF 98.9 5.4E-10 1.8E-14 104.3 2.0 79 217-317 2-92 (114)
4 2ysm_A Myeloid/lymphoid or mix 98.8 3.1E-09 1.1E-13 98.1 6.6 82 276-381 7-89 (111)
5 3v43_A Histone acetyltransfera 98.8 3.5E-09 1.2E-13 98.4 6.5 91 276-381 5-97 (112)
6 3v43_A Histone acetyltransfera 98.8 1.3E-09 4.3E-14 101.4 3.4 82 215-317 4-96 (112)
7 4gne_A Histone-lysine N-methyl 98.7 2.1E-08 7.2E-13 93.3 6.4 74 277-381 16-89 (107)
8 2kwj_A Zinc finger protein DPF 98.6 3.2E-08 1.1E-12 92.3 5.5 88 278-381 3-93 (114)
9 1mm2_A MI2-beta; PHD, zinc fin 98.5 5.1E-08 1.8E-12 81.8 4.6 52 212-275 5-56 (61)
10 1xwh_A Autoimmune regulator; P 98.5 3.6E-08 1.2E-12 83.8 3.2 50 214-275 6-55 (66)
11 2puy_A PHD finger protein 21A; 98.4 9.2E-08 3.1E-12 79.7 2.8 49 214-274 3-51 (60)
12 2l5u_A Chromodomain-helicase-D 98.4 1.7E-07 5.8E-12 78.6 3.8 52 212-275 7-58 (61)
13 3u5n_A E3 ubiquitin-protein li 98.4 1.3E-07 4.3E-12 96.2 3.7 52 211-274 2-53 (207)
14 1fp0_A KAP-1 corepressor; PHD 98.4 2.7E-07 9.4E-12 83.1 4.9 52 211-274 20-71 (88)
15 2yql_A PHD finger protein 21A; 98.3 1.9E-07 6.5E-12 76.9 3.2 50 213-274 6-55 (56)
16 3o36_A Transcription intermedi 98.3 3.2E-07 1.1E-11 91.5 4.1 49 214-274 2-50 (184)
17 2yt5_A Metal-response element- 98.2 3.3E-07 1.1E-11 77.3 1.7 53 214-275 4-61 (66)
18 2lri_C Autoimmune regulator; Z 98.2 7.5E-07 2.6E-11 76.1 3.3 48 215-274 11-58 (66)
19 2l43_A N-teminal domain from h 98.2 6.1E-07 2.1E-11 80.5 2.9 47 215-275 24-75 (88)
20 2e6r_A Jumonji/ARID domain-con 98.1 1.3E-06 4.5E-11 78.9 3.5 53 211-275 11-66 (92)
21 2ku3_A Bromodomain-containing 98.1 7.6E-07 2.6E-11 77.1 1.2 48 214-275 14-66 (71)
22 2ro1_A Transcription intermedi 98.0 2.3E-06 8E-11 86.2 4.5 48 216-275 2-49 (189)
23 2lbm_A Transcriptional regulat 98.0 9.2E-07 3.2E-11 86.0 1.4 56 212-274 59-116 (142)
24 1wen_A Inhibitor of growth fam 98.0 5.1E-06 1.7E-10 71.9 4.9 48 214-275 14-65 (71)
25 1weu_A Inhibitor of growth fam 98.0 8.7E-06 3E-10 73.8 6.1 48 214-275 34-85 (91)
26 1f62_A Transcription factor WS 97.9 4.1E-06 1.4E-10 67.3 2.2 45 218-274 2-49 (51)
27 2k16_A Transcription initiatio 97.9 3E-06 1E-10 73.2 1.4 49 215-275 17-68 (75)
28 1wev_A Riken cDNA 1110020M19; 97.9 3.3E-06 1.1E-10 75.7 1.6 52 215-275 15-72 (88)
29 3ql9_A Transcriptional regulat 97.8 1.9E-06 6.4E-11 82.6 -0.5 57 211-274 52-110 (129)
30 2g6q_A Inhibitor of growth pro 97.8 6.4E-06 2.2E-10 69.5 1.6 45 216-274 11-59 (62)
31 2vnf_A ING 4, P29ING4, inhibit 97.7 8.8E-06 3E-10 68.1 1.4 45 216-274 10-58 (60)
32 3c6w_A P28ING5, inhibitor of g 97.7 9.6E-06 3.3E-10 67.8 1.5 45 216-274 9-57 (59)
33 2e6s_A E3 ubiquitin-protein li 97.7 2.5E-05 8.5E-10 68.6 3.9 47 216-274 26-76 (77)
34 3asl_A E3 ubiquitin-protein li 97.6 2.5E-05 8.7E-10 67.3 2.9 45 218-274 20-68 (70)
35 1we9_A PHD finger family prote 97.6 2.9E-05 1E-09 65.0 2.8 50 215-275 5-58 (64)
36 2lv9_A Histone-lysine N-methyl 97.6 5.1E-05 1.7E-09 69.2 4.5 45 216-273 30-74 (98)
37 2jmi_A Protein YNG1, ING1 homo 97.6 3E-05 1E-09 70.2 2.8 44 216-273 26-74 (90)
38 3ask_A E3 ubiquitin-protein li 97.3 8.6E-05 2.9E-09 77.2 3.3 47 216-274 174-224 (226)
39 2xb1_A Pygopus homolog 2, B-ce 97.3 2.7E-05 9.2E-10 71.9 -0.8 50 216-275 3-61 (105)
40 3lkd_A Type I restriction-modi 97.3 0.0006 2E-08 78.6 10.0 126 676-803 194-362 (542)
41 1wew_A DNA-binding family prot 97.3 0.0001 3.6E-09 64.4 2.9 49 215-274 15-71 (78)
42 3ufb_A Type I restriction-modi 97.3 0.00049 1.7E-08 78.9 9.0 48 678-727 196-243 (530)
43 2ri7_A Nucleosome-remodeling f 97.3 3.5E-05 1.2E-09 75.9 -0.6 49 215-275 7-59 (174)
44 2vpb_A Hpygo1, pygopus homolog 97.2 1.7E-05 5.9E-10 67.5 -2.5 50 214-273 6-64 (65)
45 3uzu_A Ribosomal RNA small sub 97.2 0.0001 3.5E-09 78.0 2.9 155 676-835 18-197 (279)
46 2e6s_A E3 ubiquitin-protein li 97.1 0.00032 1.1E-08 61.6 4.2 42 336-381 20-61 (77)
47 2ih2_A Modification methylase 97.1 0.00076 2.6E-08 73.1 7.3 121 673-802 13-167 (421)
48 1wem_A Death associated transc 97.0 0.00012 4.2E-09 63.4 0.6 48 216-275 16-70 (76)
49 1wep_A PHF8; structural genomi 97.0 0.00027 9.3E-09 61.8 2.6 48 216-275 12-63 (79)
50 2ar0_A M.ecoki, type I restric 97.0 0.0011 3.8E-08 76.2 8.0 176 624-803 70-316 (541)
51 2kgg_A Histone demethylase jar 96.9 0.00021 7.3E-09 57.9 1.2 44 219-273 5-52 (52)
52 3shb_A E3 ubiquitin-protein li 96.9 0.00053 1.8E-08 60.3 3.8 42 336-381 20-61 (77)
53 3shb_A E3 ubiquitin-protein li 96.9 0.00049 1.7E-08 60.5 3.5 46 217-274 27-76 (77)
54 1wee_A PHD finger family prote 96.9 0.00048 1.6E-08 59.2 3.3 47 215-274 15-65 (72)
55 2okc_A Type I restriction enzy 96.9 0.00078 2.7E-08 75.0 5.8 121 676-802 148-310 (445)
56 3asl_A E3 ubiquitin-protein li 96.9 0.00061 2.1E-08 58.6 3.8 42 336-381 12-53 (70)
57 1qam_A ERMC' methyltransferase 96.8 0.0023 7.9E-08 65.6 8.1 145 676-834 6-170 (244)
58 3khk_A Type I restriction-modi 96.8 0.0013 4.6E-08 75.7 6.7 143 648-803 201-399 (544)
59 1fp0_A KAP-1 corepressor; PHD 96.7 0.00092 3.1E-08 60.3 4.0 46 344-413 27-72 (88)
60 1x4i_A Inhibitor of growth pro 96.7 0.00043 1.5E-08 59.7 1.6 46 216-275 6-55 (70)
61 1yub_A Ermam, rRNA methyltrans 96.7 0.0025 8.6E-08 64.9 7.5 150 676-834 5-169 (245)
62 2rsd_A E3 SUMO-protein ligase 96.6 0.00097 3.3E-08 56.8 2.8 47 217-274 11-64 (68)
63 2f8l_A Hypothetical protein LM 96.5 0.0017 5.8E-08 69.5 4.6 144 648-803 83-260 (344)
64 1f62_A Transcription factor WS 96.5 0.00085 2.9E-08 53.8 1.5 34 344-381 2-35 (51)
65 3ask_A E3 ubiquitin-protein li 96.4 0.0012 4.3E-08 68.5 3.0 42 336-381 168-209 (226)
66 1wil_A KIAA1045 protein; ring 96.4 0.0013 4.3E-08 59.0 2.5 62 211-274 10-75 (89)
67 3o70_A PHD finger protein 13; 96.4 0.0017 5.8E-08 55.7 3.2 45 216-274 19-66 (68)
68 2lri_C Autoimmune regulator; Z 96.3 0.0015 5.2E-08 55.7 2.3 47 343-413 13-59 (66)
69 1mm2_A MI2-beta; PHD, zinc fin 96.3 0.0023 7.8E-08 53.6 3.1 31 344-381 11-41 (61)
70 3kqi_A GRC5, PHD finger protei 96.2 0.00093 3.2E-08 57.9 0.4 48 216-274 9-60 (75)
71 3s1s_A Restriction endonucleas 96.1 0.0042 1.4E-07 74.9 5.6 129 674-804 290-470 (878)
72 1wev_A Riken cDNA 1110020M19; 96.1 0.0031 1.1E-07 56.4 3.3 37 343-381 17-53 (88)
73 3ftd_A Dimethyladenosine trans 96.1 0.005 1.7E-07 63.9 5.2 147 676-835 7-175 (249)
74 3o36_A Transcription intermedi 96.0 0.0028 9.7E-08 63.0 3.1 46 344-413 6-51 (184)
75 2yt5_A Metal-response element- 96.0 0.004 1.4E-07 52.2 3.5 37 343-381 7-43 (66)
76 2yql_A PHD finger protein 21A; 96.0 0.0036 1.2E-07 51.3 2.9 31 344-381 11-41 (56)
77 2e6r_A Jumonji/ARID domain-con 95.9 0.0036 1.2E-07 56.5 3.0 49 344-413 18-66 (92)
78 3u5n_A E3 ubiquitin-protein li 95.9 0.0029 1E-07 64.2 2.5 47 343-413 8-54 (207)
79 1xwh_A Autoimmune regulator; P 95.9 0.0039 1.3E-07 52.8 2.9 31 344-381 10-40 (66)
80 2puy_A PHD finger protein 21A; 95.8 0.0043 1.5E-07 51.5 2.7 31 344-381 7-37 (60)
81 3o7a_A PHD finger protein 13 v 95.8 0.004 1.4E-07 50.4 2.3 40 221-273 8-50 (52)
82 2lbm_A Transcriptional regulat 95.7 0.0048 1.6E-07 60.1 3.0 62 265-342 39-113 (142)
83 2ro1_A Transcription intermedi 95.7 0.0042 1.4E-07 62.6 2.6 31 344-381 4-34 (189)
84 3tqs_A Ribosomal RNA small sub 95.6 0.016 5.4E-07 60.5 6.9 148 676-834 5-178 (255)
85 3fut_A Dimethyladenosine trans 95.6 0.025 8.5E-07 59.7 8.4 162 647-834 5-191 (271)
86 3lqh_A Histone-lysine N-methyl 95.6 0.0024 8.1E-08 64.5 0.3 48 217-275 3-63 (183)
87 2l5u_A Chromodomain-helicase-D 95.2 0.0052 1.8E-07 51.3 1.3 31 344-381 13-43 (61)
88 3kv5_D JMJC domain-containing 95.2 0.003 1E-07 72.1 -0.3 48 216-275 37-88 (488)
89 2ku3_A Bromodomain-containing 94.5 0.011 3.9E-07 51.0 1.6 34 344-379 18-51 (71)
90 2k16_A Transcription initiatio 94.5 0.012 4.2E-07 50.5 1.7 33 344-380 20-52 (75)
91 3a1b_A DNA (cytosine-5)-methyl 94.2 0.0089 3E-07 59.2 0.2 57 211-273 74-132 (159)
92 2h1r_A Dimethyladenosine trans 94.2 0.046 1.6E-06 57.8 5.7 101 676-793 18-132 (299)
93 2l43_A N-teminal domain from h 94.1 0.015 5.2E-07 52.1 1.4 35 343-379 26-60 (88)
94 1wy7_A Hypothetical protein PH 94.0 0.072 2.5E-06 51.7 6.3 117 677-805 24-156 (207)
95 2lv9_A Histone-lysine N-methyl 94.0 0.033 1.1E-06 50.7 3.5 29 347-379 32-60 (98)
96 3tma_A Methyltransferase; thum 93.6 0.19 6.4E-06 53.8 9.2 146 648-802 149-320 (354)
97 3pur_A Lysine-specific demethy 92.8 0.033 1.1E-06 64.1 1.8 37 227-274 57-93 (528)
98 3kv4_A PHD finger protein 8; e 92.6 0.016 5.5E-07 65.6 -1.1 47 217-274 5-55 (447)
99 4bbq_A Lysine-specific demethy 92.4 0.043 1.5E-06 50.6 1.7 85 217-317 8-94 (117)
100 1i4w_A Mitochondrial replicati 92.2 0.26 8.7E-06 54.2 7.8 139 661-808 12-194 (353)
101 3tm4_A TRNA (guanine N2-)-meth 92.0 0.15 5.3E-06 55.4 5.8 103 687-800 206-330 (373)
102 1zq9_A Probable dimethyladenos 91.5 0.15 5.2E-06 53.4 4.9 144 676-834 4-175 (285)
103 1we9_A PHD finger family prote 91.5 0.098 3.3E-06 43.5 2.7 32 344-378 8-39 (64)
104 3rsn_A SET1/ASH2 histone methy 91.4 0.094 3.2E-06 52.8 2.9 46 221-274 9-58 (177)
105 2pv0_B DNA (cytosine-5)-methyl 91.2 0.042 1.4E-06 61.1 0.3 56 212-273 89-146 (386)
106 1ne2_A Hypothetical protein TA 91.0 0.39 1.3E-05 46.4 6.9 116 677-804 26-151 (200)
107 3gru_A Dimethyladenosine trans 90.7 0.34 1.2E-05 51.8 6.6 143 677-834 27-194 (295)
108 1qyr_A KSGA, high level kasuga 90.5 0.056 1.9E-06 56.2 0.4 142 683-835 5-173 (252)
109 3lqh_A Histone-lysine N-methyl 89.9 0.15 5E-06 51.5 2.8 36 343-378 3-38 (183)
110 3ldu_A Putative methylase; str 89.6 0.54 1.8E-05 51.7 7.3 72 648-723 140-217 (385)
111 3ql9_A Transcriptional regulat 89.4 0.11 3.8E-06 49.8 1.4 51 276-342 57-107 (129)
112 3q87_B N6 adenine specific DNA 89.3 0.2 6.9E-06 47.9 3.3 86 682-775 4-90 (170)
113 1wil_A KIAA1045 protein; ring 89.3 0.034 1.2E-06 49.9 -2.0 33 277-317 16-48 (89)
114 1uwv_A 23S rRNA (uracil-5-)-me 89.1 0.63 2.2E-05 51.6 7.5 120 672-801 253-390 (433)
115 2xb1_A Pygopus homolog 2, B-ce 89.1 0.21 7.1E-06 46.0 3.0 60 341-414 2-62 (105)
116 2ri7_A Nucleosome-remodeling f 87.8 0.11 3.7E-06 50.9 0.2 31 344-378 10-40 (174)
117 3k0b_A Predicted N6-adenine-sp 87.5 1.3 4.6E-05 48.8 8.6 71 648-722 146-222 (393)
118 2kgg_A Histone demethylase jar 87.0 0.32 1.1E-05 39.2 2.5 31 345-378 5-36 (52)
119 1wem_A Death associated transc 86.5 0.19 6.5E-06 43.3 1.0 30 344-378 18-47 (76)
120 3p9n_A Possible methyltransfer 86.3 0.19 6.4E-06 48.3 0.9 111 682-799 24-152 (189)
121 3ldg_A Putative uncharacterize 86.1 1.7 5.7E-05 48.0 8.4 73 648-722 139-215 (384)
122 2ku7_A MLL1 PHD3-CYP33 RRM chi 86.0 0.23 7.7E-06 45.5 1.3 37 228-275 2-44 (140)
123 3o70_A PHD finger protein 13; 85.9 0.37 1.3E-05 41.1 2.5 30 344-378 21-50 (68)
124 3evz_A Methyltransferase; NYSG 85.3 1.9 6.5E-05 42.3 7.7 101 695-802 49-182 (230)
125 1nv8_A HEMK protein; class I a 84.8 0.71 2.4E-05 48.3 4.6 70 700-776 122-205 (284)
126 3v97_A Ribosomal RNA large sub 84.3 0.85 2.9E-05 54.1 5.4 73 648-722 135-211 (703)
127 2vpb_A Hpygo1, pygopus homolog 84.0 0.32 1.1E-05 41.3 1.1 32 344-378 10-42 (65)
128 1wep_A PHF8; structural genomi 83.9 0.3 1E-05 42.4 1.0 31 344-378 14-44 (79)
129 3a1b_A DNA (cytosine-5)-methyl 83.7 0.58 2E-05 46.4 3.0 50 276-340 79-128 (159)
130 3dou_A Ribosomal RNA large sub 82.7 0.89 3E-05 44.7 4.0 62 685-753 10-73 (191)
131 1wee_A PHD finger family prote 82.4 0.67 2.3E-05 39.6 2.5 31 344-378 18-48 (72)
132 1wen_A Inhibitor of growth fam 82.3 1.1 3.8E-05 38.6 3.9 23 294-316 27-50 (71)
133 1weu_A Inhibitor of growth fam 81.9 1.2 4.1E-05 40.3 4.1 32 278-316 38-70 (91)
134 2g6q_A Inhibitor of growth pro 81.3 0.48 1.6E-05 39.8 1.3 29 344-378 13-44 (62)
135 2jjq_A Uncharacterized RNA met 81.1 1.8 6.3E-05 48.2 6.2 114 671-799 259-386 (425)
136 3c6w_A P28ING5, inhibitor of g 80.3 0.74 2.5E-05 38.2 2.0 30 281-316 13-43 (59)
137 2pv0_B DNA (cytosine-5)-methyl 80.1 0.83 2.8E-05 51.0 2.9 37 276-320 93-129 (386)
138 2px2_A Genome polyprotein [con 80.0 0.99 3.4E-05 48.1 3.4 36 685-722 59-94 (269)
139 2b3t_A Protein methyltransfera 79.5 1.6 5.5E-05 44.7 4.7 68 700-776 108-189 (276)
140 2plw_A Ribosomal RNA methyltra 79.0 1.4 4.9E-05 42.1 4.0 66 685-753 7-74 (201)
141 1wew_A DNA-binding family prot 78.6 0.59 2E-05 40.6 1.0 30 344-378 18-49 (78)
142 2vnf_A ING 4, P29ING4, inhibit 78.6 0.9 3.1E-05 37.7 2.0 30 281-316 14-44 (60)
143 3a27_A TYW2, uncharacterized p 78.1 2.4 8.3E-05 43.8 5.6 86 699-797 117-216 (272)
144 1ej0_A FTSJ; methyltransferase 77.7 6.8 0.00023 35.6 7.9 84 686-774 8-99 (180)
145 1i1n_A Protein-L-isoaspartate 77.6 3.3 0.00011 40.5 6.2 51 673-723 49-99 (226)
146 3lpm_A Putative methyltransfer 77.2 0.81 2.8E-05 46.5 1.7 72 699-776 46-132 (259)
147 2jmi_A Protein YNG1, ING1 homo 76.5 1.9 6.3E-05 39.0 3.6 23 294-316 37-60 (90)
148 1dus_A MJ0882; hypothetical pr 76.4 4.3 0.00015 37.8 6.3 119 670-801 18-159 (194)
149 2ozv_A Hypothetical protein AT 75.6 2.2 7.4E-05 43.8 4.3 104 699-802 34-173 (260)
150 2rsd_A E3 SUMO-protein ligase 75.3 1.5 5E-05 37.2 2.5 27 347-377 14-42 (68)
151 3o7a_A PHD finger protein 13 v 75.2 1.4 4.8E-05 35.3 2.2 28 347-378 8-35 (52)
152 2lq6_A Bromodomain-containing 74.9 0.91 3.1E-05 40.5 1.1 32 214-245 15-49 (87)
153 3lbf_A Protein-L-isoaspartate 74.7 6.3 0.00022 37.9 7.2 44 677-722 55-98 (210)
154 4dzr_A Protein-(glutamine-N5) 74.5 0.57 1.9E-05 44.8 -0.3 84 689-777 15-115 (215)
155 1o9g_A RRNA methyltransferase; 74.3 0.85 2.9E-05 45.9 0.9 35 688-722 36-72 (250)
156 2fpo_A Methylase YHHF; structu 74.3 0.8 2.7E-05 44.9 0.7 88 701-798 54-158 (202)
157 2frn_A Hypothetical protein PH 73.5 3.4 0.00012 42.8 5.3 76 695-779 119-208 (278)
158 2pbf_A Protein-L-isoaspartate 73.4 4.9 0.00017 39.3 6.1 55 669-723 48-102 (227)
159 3uwp_A Histone-lysine N-methyl 72.4 6.6 0.00023 44.5 7.5 87 631-722 103-194 (438)
160 2nyu_A Putative ribosomal RNA 71.9 3.5 0.00012 39.2 4.5 38 685-723 7-44 (196)
161 3gcz_A Polyprotein; flavivirus 71.1 2.1 7.1E-05 46.0 3.0 35 685-721 76-110 (282)
162 1r18_A Protein-L-isoaspartate( 71.0 6.3 0.00022 38.8 6.3 49 676-724 59-107 (227)
163 1vbf_A 231AA long hypothetical 70.4 4.2 0.00015 39.8 4.9 43 678-722 49-91 (231)
164 4ap4_A E3 ubiquitin ligase RNF 69.8 0.55 1.9E-05 42.6 -1.5 16 302-317 30-45 (133)
165 2h00_A Methyltransferase 10 do 68.3 3.7 0.00013 41.1 4.0 23 701-723 65-87 (254)
166 3jwh_A HEN1; methyltransferase 67.6 1.9 6.4E-05 42.0 1.6 147 687-870 17-183 (217)
167 3evf_A RNA-directed RNA polyme 67.6 2.7 9.3E-05 45.0 3.0 35 685-721 60-94 (277)
168 2p41_A Type II methyltransfera 67.6 2.9 0.0001 44.4 3.3 37 684-722 67-103 (305)
169 1iym_A EL5; ring-H2 finger, ub 67.6 3.1 0.0001 32.4 2.6 16 302-317 25-40 (55)
170 3kqi_A GRC5, PHD finger protei 67.5 1.2 4.1E-05 38.3 0.2 29 347-378 14-42 (75)
171 2ift_A Putative methylase HI07 67.2 1.2 4.3E-05 43.5 0.3 106 688-803 41-167 (201)
172 2oxt_A Nucleoside-2'-O-methylt 66.9 3.3 0.00011 43.2 3.4 36 685-722 60-95 (265)
173 3k6r_A Putative transferase PH 66.4 3.5 0.00012 43.6 3.5 29 694-722 118-146 (278)
174 2lq6_A Bromodomain-containing 65.7 2.1 7.2E-05 38.2 1.4 32 278-315 19-50 (87)
175 4dcm_A Ribosomal RNA large sub 65.6 4.8 0.00016 44.0 4.5 99 691-799 214-333 (375)
176 2fhp_A Methylase, putative; al 65.4 2.8 9.6E-05 39.3 2.4 84 683-774 27-127 (187)
177 3hp7_A Hemolysin, putative; st 62.1 24 0.00084 37.6 9.1 113 674-800 64-187 (291)
178 1x4i_A Inhibitor of growth pro 61.2 4.1 0.00014 34.9 2.3 24 294-317 17-41 (70)
179 1g55_A DNA cytosine methyltran 60.5 5 0.00017 43.3 3.5 83 704-797 4-117 (343)
180 2yxe_A Protein-L-isoaspartate 60.3 10 0.00035 36.6 5.3 45 677-723 55-99 (215)
181 3jwg_A HEN1, methyltransferase 59.9 3.4 0.00012 40.1 1.9 149 685-870 15-183 (219)
182 2wa2_A Non-structural protein 59.5 5.2 0.00018 42.0 3.3 36 685-722 68-103 (276)
183 3kv5_D JMJC domain-containing 58.9 2.1 7.3E-05 48.9 0.3 29 347-378 41-69 (488)
184 3g7u_A Cytosine-specific methy 58.5 8.9 0.00031 42.1 5.1 83 704-797 4-117 (376)
185 3dxy_A TRNA (guanine-N(7)-)-me 58.1 5 0.00017 40.1 2.8 96 697-796 30-146 (218)
186 1jg1_A PIMT;, protein-L-isoasp 58.0 12 0.00043 36.9 5.6 45 677-723 69-113 (235)
187 4bbq_A Lysine-specific demethy 57.9 3.6 0.00012 37.6 1.5 25 356-380 70-94 (117)
188 3bt7_A TRNA (uracil-5-)-methyl 57.4 8.3 0.00028 41.6 4.5 34 688-721 199-233 (369)
189 2qm3_A Predicted methyltransfe 57.2 7.4 0.00025 42.0 4.1 108 677-792 147-269 (373)
190 3eld_A Methyltransferase; flav 56.9 6.2 0.00021 42.7 3.4 36 685-722 67-102 (300)
191 3pur_A Lysine-specific demethy 55.9 6.5 0.00022 45.5 3.5 22 357-378 54-75 (528)
192 1ws6_A Methyltransferase; stru 55.1 9.3 0.00032 35.0 3.9 40 683-722 23-62 (171)
193 2d8s_A Cellular modulator of i 54.9 5 0.00017 35.0 1.8 38 277-317 16-53 (80)
194 2c7p_A Modification methylase 54.5 17 0.00057 39.2 6.2 83 703-798 12-119 (327)
195 3fzg_A 16S rRNA methylase; met 53.9 12 0.0004 38.4 4.6 123 681-819 26-174 (200)
196 3njr_A Precorrin-6Y methylase; 53.9 16 0.00054 35.8 5.5 55 665-722 22-76 (204)
197 2yxd_A Probable cobalt-precorr 53.9 11 0.00037 34.8 4.1 101 681-800 17-132 (183)
198 2r6z_A UPF0341 protein in RSP 53.0 3.8 0.00013 42.5 0.9 102 699-807 81-224 (258)
199 3e05_A Precorrin-6Y C5,15-meth 52.1 21 0.00073 34.2 6.1 38 683-722 24-61 (204)
200 2ecl_A Ring-box protein 2; RNF 51.4 3.9 0.00013 35.1 0.6 46 267-318 16-62 (81)
201 2b9e_A NOL1/NOP2/SUN domain fa 51.2 15 0.00053 39.0 5.3 25 699-723 100-124 (309)
202 3dmg_A Probable ribosomal RNA 50.6 22 0.00077 38.9 6.6 102 688-799 220-339 (381)
203 3id6_C Fibrillarin-like rRNA/T 49.8 11 0.00036 38.9 3.7 35 690-724 64-99 (232)
204 1rut_X Flinc4, fusion protein 48.1 7.9 0.00027 38.1 2.3 86 214-313 3-98 (188)
205 1nt2_A Fibrillarin-like PRE-rR 47.3 17 0.00059 35.9 4.7 55 666-723 20-79 (210)
206 1v87_A Deltex protein 2; ring- 46.8 11 0.00037 33.7 2.8 16 302-317 59-74 (114)
207 3av4_A DNA (cytosine-5)-methyl 46.7 40 0.0014 43.2 8.7 104 57-160 166-278 (1330)
208 3nw0_A Non-structural maintena 46.5 8.3 0.00028 40.0 2.3 33 276-317 180-212 (238)
209 3p2e_A 16S rRNA methylase; met 46.5 9.8 0.00034 38.2 2.7 28 695-722 18-45 (225)
210 3htx_A HEN1; HEN1, small RNA m 45.7 12 0.00041 46.0 3.7 34 687-722 709-742 (950)
211 2rgt_A Fusion of LIM/homeobox 45.5 9.6 0.00033 36.8 2.4 83 216-313 6-94 (169)
212 2cup_A Skeletal muscle LIM-pro 45.4 17 0.00057 31.8 3.8 85 215-313 4-95 (101)
213 2lk0_A RNA-binding protein 5; 45.3 9.9 0.00034 28.0 1.9 22 264-285 3-28 (32)
214 2ct0_A Non-SMC element 1 homol 45.0 9 0.00031 33.2 1.9 34 276-318 15-48 (74)
215 3eey_A Putative rRNA methylase 44.4 22 0.00076 33.7 4.8 27 697-723 18-44 (197)
216 2pwy_A TRNA (adenine-N(1)-)-me 43.8 50 0.0017 32.5 7.4 77 687-772 84-175 (258)
217 3k1l_B Fancl; UBC, ring, RWD, 43.6 17 0.00059 40.3 4.2 41 275-317 307-347 (381)
218 3dpl_R Ring-box protein 1; ubi 42.7 5.8 0.0002 36.3 0.3 16 302-317 71-86 (106)
219 2esr_A Methyltransferase; stru 42.5 13 0.00043 34.8 2.7 101 688-798 19-136 (177)
220 3pfq_A PKC-B, PKC-beta, protei 42.4 13 0.00045 43.4 3.3 96 215-317 47-149 (674)
221 2ku7_A MLL1 PHD3-CYP33 RRM chi 41.1 5.1 0.00017 36.4 -0.3 18 360-377 1-18 (140)
222 3rsn_A SET1/ASH2 histone methy 40.6 11 0.00037 38.0 1.9 43 357-413 16-59 (177)
223 3d2l_A SAM-dependent methyltra 40.2 14 0.00047 36.0 2.6 32 690-721 22-53 (243)
224 2yxl_A PH0851 protein, 450AA l 39.9 38 0.0013 37.6 6.4 33 689-723 249-281 (450)
225 3ubt_Y Modification methylase 39.8 12 0.00041 39.2 2.2 88 704-797 2-108 (331)
226 3qv2_A 5-cytosine DNA methyltr 39.6 23 0.00079 38.2 4.5 89 704-798 12-129 (327)
227 3ege_A Putative methyltransfer 39.4 63 0.0022 32.3 7.4 102 687-802 22-134 (261)
228 2jtn_A LIM domain-binding prot 39.3 15 0.00051 35.9 2.7 85 214-313 58-148 (182)
229 3hm2_A Precorrin-6Y C5,15-meth 38.9 21 0.0007 33.0 3.5 40 681-722 7-46 (178)
230 2zig_A TTHA0409, putative modi 37.4 21 0.00073 37.2 3.7 40 679-721 214-255 (297)
231 2kiz_A E3 ubiquitin-protein li 37.2 14 0.00048 29.9 1.8 31 214-245 12-45 (69)
232 4h0n_A DNMT2; SAH binding, tra 36.9 25 0.00085 38.0 4.2 84 704-797 5-117 (333)
233 3mti_A RRNA methylase; SAM-dep 36.3 19 0.00066 33.7 2.9 28 695-722 16-43 (185)
234 3kv4_A PHD finger protein 8; e 36.3 7.9 0.00027 43.9 0.2 29 347-378 9-37 (447)
235 1l3i_A Precorrin-6Y methyltran 36.3 37 0.0013 31.3 4.8 39 682-722 16-54 (192)
236 3lkz_A Non-structural protein 36.0 20 0.0007 39.0 3.3 50 685-740 80-129 (321)
237 1dl5_A Protein-L-isoaspartate 36.0 28 0.00097 36.4 4.4 42 680-723 56-97 (317)
238 4df3_A Fibrillarin-like rRNA/T 35.0 18 0.0006 37.4 2.5 37 687-723 61-99 (233)
239 3kr9_A SAM-dependent methyltra 35.0 24 0.00083 36.2 3.6 99 697-801 11-120 (225)
240 1vyx_A ORF K3, K3RING; zinc-bi 34.6 11 0.00038 31.0 0.8 37 276-317 6-42 (60)
241 3pfq_A PKC-B, PKC-beta, protei 34.3 20 0.00069 41.8 3.2 94 278-379 50-148 (674)
242 4gek_A TRNA (CMO5U34)-methyltr 33.8 18 0.00061 37.3 2.4 33 691-723 60-92 (261)
243 3grz_A L11 mtase, ribosomal pr 33.4 31 0.0011 33.0 3.9 96 688-798 47-157 (205)
244 2l0b_A E3 ubiquitin-protein li 33.4 8.2 0.00028 33.6 -0.2 15 303-317 60-74 (91)
245 1g60_A Adenine-specific methyl 33.2 23 0.0008 36.2 3.1 38 681-721 193-232 (260)
246 3dli_A Methyltransferase; PSI- 32.9 39 0.0013 33.2 4.6 37 686-722 26-62 (240)
247 2r3s_A Uncharacterized protein 32.9 40 0.0014 34.9 4.8 101 687-794 151-265 (335)
248 1ve3_A Hypothetical protein PH 32.5 30 0.001 33.2 3.6 37 686-722 23-59 (227)
249 3p8z_A Mtase, non-structural p 32.3 26 0.0009 37.2 3.3 78 685-771 64-154 (267)
250 2pxx_A Uncharacterized protein 32.3 39 0.0013 32.0 4.3 32 691-722 32-63 (215)
251 3bkx_A SAM-dependent methyltra 32.2 99 0.0034 30.7 7.5 50 685-739 29-78 (275)
252 2pjd_A Ribosomal RNA small sub 32.0 70 0.0024 33.8 6.7 101 688-799 185-302 (343)
253 1x19_A CRTF-related protein; m 32.0 1.1E+02 0.0038 32.2 8.2 95 688-793 179-288 (359)
254 3mb5_A SAM-dependent methyltra 31.4 74 0.0025 31.4 6.4 81 685-774 79-173 (255)
255 1m6y_A S-adenosyl-methyltransf 31.2 33 0.0011 36.4 4.0 37 685-723 12-48 (301)
256 3frh_A 16S rRNA methylase; met 30.8 21 0.00072 37.8 2.3 124 679-819 81-228 (253)
257 3opn_A Putative hemolysin; str 30.2 36 0.0012 34.5 3.8 44 673-722 15-58 (232)
258 2k1p_A Zinc finger RAN-binding 30.2 33 0.0011 25.3 2.6 23 264-286 4-30 (33)
259 2b25_A Hypothetical protein; s 30.2 53 0.0018 34.4 5.3 43 679-723 85-127 (336)
260 3epz_A DNA (cytosine-5)-methyl 30.1 1.2E+02 0.004 32.4 7.7 96 64-160 126-230 (268)
261 4a0k_B E3 ubiquitin-protein li 29.3 11 0.00039 35.1 0.0 16 302-317 82-97 (117)
262 1wim_A KIAA0161 protein; ring 29.1 22 0.00075 30.9 1.8 34 302-346 24-59 (94)
263 2ecm_A Ring finger and CHY zin 29.0 19 0.00064 27.7 1.2 16 302-317 25-40 (55)
264 2d8s_A Cellular modulator of i 28.9 24 0.00081 30.6 1.9 29 216-245 15-50 (80)
265 4ayc_A E3 ubiquitin-protein li 28.6 12 0.0004 35.1 -0.1 16 302-317 69-84 (138)
266 1yb2_A Hypothetical protein TA 28.6 64 0.0022 32.8 5.4 32 690-723 101-132 (275)
267 2b78_A Hypothetical protein SM 28.4 50 0.0017 35.9 4.9 48 671-721 179-232 (385)
268 1eg2_A Modification methylase 28.2 25 0.00084 37.7 2.3 32 681-714 223-255 (319)
269 1o54_A SAM-dependent O-methylt 28.0 74 0.0025 32.2 5.8 77 688-774 101-192 (277)
270 3l8d_A Methyltransferase; stru 27.4 31 0.0011 33.6 2.7 32 691-722 43-74 (242)
271 3ggd_A SAM-dependent methyltra 27.4 47 0.0016 32.5 4.1 35 688-722 43-77 (245)
272 2ecv_A Tripartite motif-contai 27.3 39 0.0014 27.9 3.0 15 303-317 36-50 (85)
273 1yzh_A TRNA (guanine-N(7)-)-me 26.7 58 0.002 31.5 4.5 23 700-722 40-62 (214)
274 2vdv_E TRNA (guanine-N(7)-)-me 26.6 45 0.0015 33.3 3.8 25 698-722 46-70 (246)
275 2ecj_A Tripartite motif-contai 26.4 45 0.0015 25.7 3.0 16 302-317 31-46 (58)
276 3lcv_B Sisomicin-gentamicin re 26.2 42 0.0014 36.0 3.6 130 679-819 107-258 (281)
277 2xyq_A Putative 2'-O-methyl tr 26.2 52 0.0018 34.9 4.3 63 687-754 46-118 (290)
278 3ajd_A Putative methyltransfer 26.1 26 0.00088 36.0 2.0 47 675-723 59-105 (274)
279 3hem_A Cyclopropane-fatty-acyl 26.0 53 0.0018 33.6 4.3 61 687-754 60-134 (302)
280 3ujc_A Phosphoethanolamine N-m 25.9 52 0.0018 32.3 4.1 98 686-793 42-152 (266)
281 1vyx_A ORF K3, K3RING; zinc-bi 25.9 17 0.00057 30.0 0.4 29 216-245 6-39 (60)
282 3ou2_A SAM-dependent methyltra 25.3 32 0.0011 32.7 2.3 34 688-722 34-67 (218)
283 2xjy_A Rhombotin-2; oncoprotei 25.0 16 0.00054 33.4 0.1 84 217-313 3-95 (131)
284 2ysl_A Tripartite motif-contai 24.7 29 0.00099 28.2 1.7 15 303-317 37-51 (73)
285 3bxo_A N,N-dimethyltransferase 24.7 60 0.002 31.3 4.2 34 690-723 29-62 (239)
286 1nkv_A Hypothetical protein YJ 24.6 66 0.0022 31.6 4.5 37 685-723 22-58 (256)
287 1g8a_A Fibrillarin-like PRE-rR 24.5 60 0.002 31.6 4.2 35 689-723 60-95 (227)
288 3bgv_A MRNA CAP guanine-N7 met 24.3 43 0.0015 34.5 3.2 38 684-721 17-54 (313)
289 3dh0_A SAM dependent methyltra 24.2 91 0.0031 29.7 5.4 34 688-723 26-59 (219)
290 2fk8_A Methoxy mycolic acid sy 23.4 61 0.0021 33.3 4.2 35 687-723 78-112 (318)
291 3c0k_A UPF0064 protein YCCW; P 23.0 70 0.0024 34.6 4.7 48 670-722 187-241 (396)
292 2ysj_A Tripartite motif-contai 22.8 22 0.00075 28.3 0.6 15 303-317 37-51 (63)
293 3ll7_A Putative methyltransfer 22.8 58 0.002 36.4 4.1 80 629-721 29-113 (410)
294 1ixk_A Methyltransferase; open 22.7 53 0.0018 34.6 3.6 43 679-723 98-140 (315)
295 3iv6_A Putative Zn-dependent a 22.6 37 0.0013 35.4 2.4 36 685-722 31-66 (261)
296 2nxc_A L11 mtase, ribosomal pr 22.4 56 0.0019 33.1 3.6 31 691-721 110-140 (254)
297 1kpg_A CFA synthase;, cyclopro 22.0 71 0.0024 32.2 4.3 35 687-723 52-86 (287)
298 4a0k_B E3 ubiquitin-protein li 21.8 22 0.00077 33.2 0.5 13 233-245 82-94 (117)
299 3e23_A Uncharacterized protein 21.7 52 0.0018 31.4 3.1 34 685-722 31-64 (211)
300 3lup_A DEGV family protein; PS 21.7 2.2E+02 0.0074 30.0 8.0 95 624-726 128-253 (285)
301 1tw3_A COMT, carminomycin 4-O- 21.6 1.5E+02 0.0051 31.0 6.8 98 689-797 173-285 (360)
302 3gdh_A Trimethylguanosine synt 21.6 37 0.0013 33.3 2.1 78 688-777 66-158 (241)
303 3pl5_A SMU_165, putative uncha 21.2 1.6E+02 0.0055 31.7 7.0 93 624-725 163-285 (320)
304 2y43_A E3 ubiquitin-protein li 21.2 27 0.00091 30.5 0.8 16 302-317 39-54 (99)
305 1vl5_A Unknown conserved prote 21.0 55 0.0019 32.4 3.2 38 683-722 21-58 (260)
306 2ect_A Ring finger protein 126 20.9 66 0.0023 26.5 3.2 31 214-245 13-46 (78)
307 1jsx_A Glucose-inhibited divis 20.8 2.1E+02 0.0073 26.9 7.2 34 688-722 51-86 (207)
308 2o57_A Putative sarcosine dime 20.8 77 0.0026 32.0 4.3 37 687-723 66-104 (297)
309 3hnr_A Probable methyltransfer 20.8 2.5E+02 0.0085 26.6 7.7 94 689-793 35-138 (220)
310 1v6g_A Actin binding LIM prote 20.6 56 0.0019 27.3 2.7 38 266-313 3-42 (81)
311 1jm7_A BRCA1, breast cancer ty 20.6 34 0.0012 30.1 1.4 16 302-317 37-52 (112)
312 2ipx_A RRNA 2'-O-methyltransfe 20.4 81 0.0028 30.9 4.2 26 698-723 74-99 (233)
313 3mq2_A 16S rRNA methyltransfer 20.4 62 0.0021 31.1 3.3 24 699-722 25-48 (218)
314 3fdj_A DEGV family protein; GU 20.1 1.4E+02 0.0047 31.4 6.1 93 625-725 124-246 (278)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.35 E-value=7.8e-13 Score=122.25 Aligned_cols=103 Identities=24% Similarity=0.683 Sum_probs=78.7
Q ss_pred cCCCCccccccCCCCce---eecCcccccccccccccCccccccccCCcccccCCCCceecccccccCcccccccccCCC
Q 002824 212 DENYFAVCAICDDGGDV---TFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSS 288 (876)
Q Consensus 212 dd~~d~VCaICe~gGeL---L~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~gqHqCfiCgklGss 288 (876)
...++++|.+|+++|++ |+|+ .|.++||+.|+ +++..++ +.+.|+|++|. .|.+|++.+.
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl----------~~~~~~~-~~~~W~C~~C~----~C~~C~~~~~- 65 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCL----------DIAVTPL-KRAGWQCPECK----VCQNCKQSGE- 65 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTT----------TCCCCTT-TSTTCCCTTTC----CCTTTCCCSC-
T ss_pred CCCCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHh----------CCccccc-cccCccCCcCC----cccccCccCC-
Confidence 34578999999999986 9999 59999999974 3332222 35799999998 6999998763
Q ss_pred CCCCCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHHhhcCCceecCCcccccCcCCc
Q 002824 289 DKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSE 352 (876)
Q Consensus 289 d~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g~~F~CPlH~C~~C~~se 352 (876)
...++.| ..|++.||..|+.+.+.. +. ...|.|| .|..|..+.
T Consensus 66 ----~~~ll~C--d~C~~~yH~~Cl~ppl~~------------~P-~g~W~C~--~C~~c~~g~ 108 (111)
T 2ysm_A 66 ----DSKMLVC--DTCDKGYHTFCLQPVMKS------------VP-TNGWKCK--NCRICISGP 108 (111)
T ss_dssp ----CTTEEEC--SSSCCEEEGGGSSSCCSS------------CC-SSCCCCH--HHHCCSCSC
T ss_pred ----CCCeeEC--CCCCcHHhHHhcCCcccc------------CC-CCCcCCc--CCcCcCCCC
Confidence 3579999 799999999999865421 11 2579998 677777643
No 2
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.00 E-value=2.8e-10 Score=105.78 Aligned_cols=77 Identities=25% Similarity=0.511 Sum_probs=64.1
Q ss_pred CCCCccccccCCCCceeecCc-ccccccccccccCccccccccCCcccccCCCCceecccccccCcccccccccCCCCCC
Q 002824 213 ENYFAVCAICDDGGDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKS 291 (876)
Q Consensus 213 d~~d~VCaICe~gGeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~gqHqCfiCgklGssd~s 291 (876)
...+++|.+|.++|+||+||+ .|+++||+.| ||++.. +.+.|+|+.|. |.+|++..
T Consensus 12 ~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~C----------l~L~~~---P~g~W~Cp~c~-----C~~C~k~~----- 68 (107)
T 4gne_A 12 QMHEDYCFQCGDGGELVMCDKKDCPKAYHLLC----------LNLTQP---PYGKWECPWHQ-----CDECSSAA----- 68 (107)
T ss_dssp CSSCSSCTTTCCCSEEEECCSTTCCCEECTGG----------GTCSSC---CSSCCCCGGGB-----CTTTCSBC-----
T ss_pred CCCCCCCCcCCCCCcEeEECCCCCCccccccc----------CcCCcC---CCCCEECCCCC-----CCcCCCCC-----
Confidence 345789999999999999995 5999999996 566543 47899999886 99998642
Q ss_pred CCCceeccCCCccCCCCccccccccCC
Q 002824 292 SSQEVFPCVSATCGQFYHPECVSKLLH 318 (876)
Q Consensus 292 s~~eV~kCsv~~CGkfYH~~CL~~~~~ 318 (876)
.+.| ..|.+.||..|+...+.
T Consensus 69 ----~~~C--~~Cp~sfC~~c~~g~l~ 89 (107)
T 4gne_A 69 ----VSFC--EFCPHSFCKDHEKGALV 89 (107)
T ss_dssp ----CEEC--SSSSCEECTTTCTTSCE
T ss_pred ----CcCc--CCCCcchhhhccCCcce
Confidence 2889 79999999999987664
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.85 E-value=5.4e-10 Score=104.31 Aligned_cols=79 Identities=25% Similarity=0.619 Sum_probs=60.8
Q ss_pred ccccccCCC----------CceeecCcccccccccccccCccccccccCCccc--ccCCCCceecccccccCcccccccc
Q 002824 217 AVCAICDDG----------GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQA--QIDAVPNFLCQNCVYQEHQCFACGM 284 (876)
Q Consensus 217 ~VCaICe~g----------GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~--ev~~~~~W~C~eC~~gqHqCfiCgk 284 (876)
++|.+|.++ |+||.|+ .|.++||+.|+ +++.. +..+.+.|+|++|. .|.+|+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~-~C~~~~H~~Cl----------~~~~~~~~~~~~~~W~C~~C~----~C~~C~~ 66 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA-DCGRSGHPTCL----------QFTLNMTEAVKTYKWQCIECK----SCILCGT 66 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS-SSCCEECTTTT----------TCCHHHHHHHHHTTCCCGGGC----CCTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeC-CCCCccchhhC----------CChhhhhhccCCCccCccccC----ccCcccc
Confidence 679999654 4899999 49999999974 33211 11135789999997 5999997
Q ss_pred cCCCCCCCCCceeccCCCccCCCCccccccccC
Q 002824 285 LGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 285 lGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
.+. .+.++.| ..|.+.||..|+.+.+
T Consensus 67 ~~~-----~~~ll~C--d~C~~~yH~~Cl~ppl 92 (114)
T 2kwj_A 67 SEN-----DDQLLFC--DDCDRGYHMYCLNPPV 92 (114)
T ss_dssp CTT-----TTTEEEC--SSSCCEEETTTSSSCC
T ss_pred cCC-----CCceEEc--CCCCccccccccCCCc
Confidence 642 4689999 7999999999998644
No 4
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.84 E-value=3.1e-09 Score=98.15 Aligned_cols=82 Identities=32% Similarity=0.738 Sum_probs=65.5
Q ss_pred CcccccccccCCCCCCCCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHHhhcCCceecCCc-ccccCcCCccc
Q 002824 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSEDM 354 (876)
Q Consensus 276 qHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g~~F~CPlH-~C~~C~~sedk 354 (876)
...|.+|+..|. ..+++.| ..|++.||+.|+.....+. ....|.||.- .|.+|+..++.
T Consensus 7 ~~~C~~C~~~g~-----~~~ll~C--~~C~~~~H~~Cl~~~~~~~-------------~~~~W~C~~C~~C~~C~~~~~~ 66 (111)
T 2ysm_A 7 GANCAVCDSPGD-----LLDQFFC--TTCGQHYHGMCLDIAVTPL-------------KRAGWQCPECKVCQNCKQSGED 66 (111)
T ss_dssp CSCBTTTCCCCC-----TTTSEEC--SSSCCEECTTTTTCCCCTT-------------TSTTCCCTTTCCCTTTCCCSCC
T ss_pred CCCCcCCCCCCC-----CcCCeEC--CCCCCCcChHHhCCccccc-------------cccCccCCcCCcccccCccCCC
Confidence 457999987763 2467899 7999999999998765331 2367999986 69999987653
Q ss_pred cccccceeeccccccccccccCCCCcc
Q 002824 355 NVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 355 ~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
.+|+.|..|+++||..||.+++.
T Consensus 67 ----~~ll~Cd~C~~~yH~~Cl~ppl~ 89 (111)
T 2ysm_A 67 ----SKMLVCDTCDKGYHTFCLQPVMK 89 (111)
T ss_dssp ----TTEEECSSSCCEEEGGGSSSCCS
T ss_pred ----CCeeECCCCCcHHhHHhcCCccc
Confidence 47999999999999999988764
No 5
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.83 E-value=3.5e-09 Score=98.41 Aligned_cols=91 Identities=23% Similarity=0.560 Sum_probs=66.8
Q ss_pred CcccccccccCCCCCC-CCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHHhhcCCceecCCc-ccccCcCCcc
Q 002824 276 EHQCFACGMLGSSDKS-SSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSED 353 (876)
Q Consensus 276 qHqCfiCgklGssd~s-s~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g~~F~CPlH-~C~~C~~sed 353 (876)
.+.|.+|...+..+.. .+++++.| ..|++.||+.|+...+ ++...+ ....|.||.. +|.+|+..+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C--~~C~~~~H~~Cl~~~~---------~~~~~~-~~~~W~C~~C~~C~vC~~~~~ 72 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISC--ADCGNSGHPSCLKFSP---------ELTVRV-KALRWQCIECKTCSSCRDQGK 72 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEEC--TTTCCEECHHHHTCCH---------HHHHHH-HTSCCCCTTTCCBTTTCCCCC
T ss_pred CccccccCCchhhCcCCCchhceEh--hhcCCCCCCchhcCCH---------HHHHHh-hccccccccCCccccccCcCC
Confidence 4568888765433221 24589999 7899999999997432 122222 3468999998 7999998542
Q ss_pred ccccccceeeccccccccccccCCCCcc
Q 002824 354 MNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 354 k~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
.+.+|+.|+.|+++||..||.+++.
T Consensus 73 ---~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 73 ---NADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp ---TTCCCEECTTTCCEECGGGCSSCCS
T ss_pred ---CccceEEcCCCCCeeecccCCCCCC
Confidence 2358999999999999999988764
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.82 E-value=1.3e-09 Score=101.44 Aligned_cols=82 Identities=21% Similarity=0.540 Sum_probs=62.4
Q ss_pred CCccccccCC---------CCceeecCcccccccccccccCccccccccCCccc--ccCCCCceecccccccCccccccc
Q 002824 215 YFAVCAICDD---------GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQA--QIDAVPNFLCQNCVYQEHQCFACG 283 (876)
Q Consensus 215 ~d~VCaICe~---------gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~--ev~~~~~W~C~eC~~gqHqCfiCg 283 (876)
...+|.+|.. +|+||.|++ |.++||+.|+ +++.. ..-+.+.|+|++|. .|.+|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl----------~~~~~~~~~~~~~~W~C~~C~----~C~vC~ 68 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCL----------KFSPELTVRVKALRWQCIECK----TCSSCR 68 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHH----------TCCHHHHHHHHTSCCCCTTTC----CBTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhh-cCCCCCCchh----------cCCHHHHHHhhccccccccCC----cccccc
Confidence 4688999954 458999995 9999999964 33211 11136799999998 599999
Q ss_pred ccCCCCCCCCCceeccCCCccCCCCccccccccC
Q 002824 284 MLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 284 klGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
..|. ..+.++.| ..|.+.||..|+.+.+
T Consensus 69 ~~~~----~~~~ll~C--d~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 69 DQGK----NADNMLFC--DSCDRGFHMECCDPPL 96 (112)
T ss_dssp CCCC----TTCCCEEC--TTTCCEECGGGCSSCC
T ss_pred CcCC----CccceEEc--CCCCCeeecccCCCCC
Confidence 7653 23579999 7899999999997554
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.67 E-value=2.1e-08 Score=93.26 Aligned_cols=74 Identities=26% Similarity=0.676 Sum_probs=59.5
Q ss_pred cccccccccCCCCCCCCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHHhhcCCceecCCcccccCcCCccccc
Q 002824 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNV 356 (876)
Q Consensus 277 HqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g~~F~CPlH~C~~C~~sedk~~ 356 (876)
..|++|+. +++|+.|....|.+.||..|+.....| ...|.||.|.|..|+....
T Consensus 16 ~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~~~P---------------~g~W~Cp~c~C~~C~k~~~--- 69 (107)
T 4gne_A 16 DYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLTQPP---------------YGKWECPWHQCDECSSAAV--- 69 (107)
T ss_dssp SSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCSSCC---------------SSCCCCGGGBCTTTCSBCC---
T ss_pred CCCCcCCC--------CCcEeEECCCCCCcccccccCcCCcCC---------------CCCEECCCCCCCcCCCCCC---
Confidence 45888873 358999965589999999999832212 2579999999999998542
Q ss_pred cccceeeccccccccccccCCCCcc
Q 002824 357 EDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 357 ~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
+.|..||.|||.+|++..+.
T Consensus 70 -----~~C~~Cp~sfC~~c~~g~l~ 89 (107)
T 4gne_A 70 -----SFCEFCPHSFCKDHEKGALV 89 (107)
T ss_dssp -----EECSSSSCEECTTTCTTSCE
T ss_pred -----cCcCCCCcchhhhccCCcce
Confidence 78999999999999987664
No 8
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.60 E-value=3.2e-08 Score=92.30 Aligned_cols=88 Identities=31% Similarity=0.669 Sum_probs=62.4
Q ss_pred ccccccccCCCCC--CCCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHHhhcCCceecCCc-ccccCcCCccc
Q 002824 278 QCFACGMLGSSDK--SSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSEDM 354 (876)
Q Consensus 278 qCfiCgklGssd~--ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g~~F~CPlH-~C~~C~~sedk 354 (876)
.|.+|...+..++ ...++++.| ..|++.||+.|+...+ ++...+ ....|.||.- .|.+|+..++
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C--~~C~~~~H~~Cl~~~~---------~~~~~~-~~~~W~C~~C~~C~~C~~~~~- 69 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSC--ADCGRSGHPTCLQFTL---------NMTEAV-KTYKWQCIECKSCILCGTSEN- 69 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEEC--SSSCCEECTTTTTCCH---------HHHHHH-HHTTCCCGGGCCCTTTTCCTT-
T ss_pred cCccCCCCccccccCCCCCCCeEe--CCCCCccchhhCCChh---------hhhhcc-CCCccCccccCccCcccccCC-
Confidence 4666754432211 124689999 6899999999997442 111112 2357999976 7899988654
Q ss_pred cccccceeeccccccccccccCCCCcc
Q 002824 355 NVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 355 ~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
+..|+.|+.|+++||..||.+++.
T Consensus 70 ---~~~ll~Cd~C~~~yH~~Cl~ppl~ 93 (114)
T 2kwj_A 70 ---DDQLLFCDDCDRGYHMYCLNPPVA 93 (114)
T ss_dssp ---TTTEEECSSSCCEEETTTSSSCCS
T ss_pred ---CCceEEcCCCCccccccccCCCcc
Confidence 358999999999999999998764
No 9
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.54 E-value=5.1e-08 Score=81.79 Aligned_cols=52 Identities=27% Similarity=0.729 Sum_probs=40.7
Q ss_pred cCCCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 212 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 212 dd~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
++.++.+|.+|.++|+||+||+ |.++||+.|+.. .++. + +.+.|+|+.|...
T Consensus 5 ~d~~~~~C~vC~~~g~ll~Cd~-C~~~fH~~Cl~p--------pl~~--~-p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGGELLCCDT-CPSSYHIHCLNP--------PLPE--I-PNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCSSCBCCSS-SCCCBCSSSSSS--------CCSS--C-CSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCCCEEEcCC-CCHHHcccccCC--------CcCc--C-CCCccCChhhcCc
Confidence 3456889999999999999995 999999997432 2332 2 3689999999853
No 10
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.52 E-value=3.6e-08 Score=83.78 Aligned_cols=50 Identities=30% Similarity=0.750 Sum_probs=39.9
Q ss_pred CCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 214 NYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 214 ~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
.++++|.+|.++|+||+||+ |.++||+.|+.+ .++.. +.+.|+|+.|..+
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~-C~~~fH~~Cl~p--------pl~~~---P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDG-CPRAFHLACLSP--------PLREI---PSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSS-CCCEECTTTSSS--------CCSSC---CSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCC-CChhhcccccCC--------CcCcC---CCCCeECccccCc
Confidence 45889999999999999995 999999997432 24332 3689999999854
No 11
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.41 E-value=9.2e-08 Score=79.71 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=39.5
Q ss_pred CCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 214 NYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 214 ~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
.++.+|.+|+++|+||.|| .|.++||+.|+.+ .++.. +.+.|+|+.|..
T Consensus 3 ~~~~~C~vC~~~g~ll~Cd-~C~~~fH~~Cl~p--------pl~~~---p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKSGQLLMCD-TCSRVYHLDCLDP--------PLKTI---PKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCCSSCEECS-SSSCEECGGGSSS--------CCSSC---CCSCCCCHHHHH
T ss_pred CCCCCCcCCCCCCcEEEcC-CCCcCEECCcCCC--------CcCCC---CCCceEChhccC
Confidence 4688999999999999999 5999999997432 24332 468999999975
No 12
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.38 E-value=1.7e-07 Score=78.64 Aligned_cols=52 Identities=23% Similarity=0.691 Sum_probs=40.9
Q ss_pred cCCCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 212 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 212 dd~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
++..+.+|.+|.++|+||+|| .|.++||+.|+. +.++.. +.+.|+|+.|...
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD-~C~~~fH~~Cl~--------p~l~~~---p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCD-TCPRAYHMVCLD--------PDMEKA---PEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECS-SSSCEEEHHHHC--------TTCCSC---CCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCCCcEEECC-CCChhhhhhccC--------CCCCCC---CCCceECcccccc
Confidence 345578999999999999999 599999999643 333322 4689999999854
No 13
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.38 E-value=1.3e-07 Score=96.20 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=41.1
Q ss_pred ccCCCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 211 KDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 211 edd~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
+++.++++|.+|+++|+||+||| |.++||..|+. .+++.. +.+.|+|+.|..
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~Cl~--------p~l~~~---p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEK-CPKVFHLTCHV--------PTLLSF---PSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSS-SSCEECTTTSS--------SCCSSC---CSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCceEEcCC-CCCccCCccCC--------CCCCCC---CCCCEEeCceeC
Confidence 34567899999999999999996 99999999753 244332 468999999985
No 14
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.36 E-value=2.7e-07 Score=83.12 Aligned_cols=52 Identities=19% Similarity=0.550 Sum_probs=41.6
Q ss_pred ccCCCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 211 KDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 211 edd~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
..+.++++|.+|+++|+||+|| .|.++||+.|+. .+++.. +.+.|+|+.|..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD-~C~~~fH~~Cl~--------PpL~~~---P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCN-QCEFCFHLDCHL--------PALQDV---PGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECT-TSSCEECTTSSS--------TTCCCC---CSSSCCCCSCCC
T ss_pred ccCCCCCcCcCcCCCCCEEECC-CCCCceecccCC--------CCCCCC---cCCCcCCccccC
Confidence 3455688999999999999999 599999999753 244433 468999999974
No 15
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=76.86 Aligned_cols=50 Identities=20% Similarity=0.561 Sum_probs=39.6
Q ss_pred CCCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 213 ENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 213 d~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
+.++.+|.+|.++|+||.|| .|.++||+.|+.+ .++.. +.+.|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd-~C~~~~H~~Cl~p--------pl~~~---p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCD-TCSRVYHLDCLDP--------PLKTI---PKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECS-SSSCEECSSSSSS--------CCCSC---CCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcC-CCCcceECccCCC--------CcCCC---CCCceEChhhhC
Confidence 45578999999999999999 5999999997532 24322 468999999974
No 16
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.29 E-value=3.2e-07 Score=91.51 Aligned_cols=49 Identities=24% Similarity=0.624 Sum_probs=39.7
Q ss_pred CCCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 214 NYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 214 ~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
.++++|.+|++||+||+||+ |.++||..|+. .+++.. +.+.|+|+.|..
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~C~~--------p~l~~~---p~~~W~C~~C~~ 50 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEK-CPKVFHLSCHV--------PTLTNF---PSGEWICTFCRD 50 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSS-SSCEECTTTSS--------SCCSSC---CSSCCCCTTTSC
T ss_pred CCCCccccCCCCCeeeecCC-CCcccCccccC--------CCCCCC---CCCCEECccccC
Confidence 46789999999999999995 99999999753 244322 368899999985
No 17
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.21 E-value=3.3e-07 Score=77.27 Aligned_cols=53 Identities=26% Similarity=0.730 Sum_probs=40.2
Q ss_pred CCCccccccCCC-----CceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 214 NYFAVCAICDDG-----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 214 ~~d~VCaICe~g-----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
..+.+|.+|..+ ++||+|+ .|.++||+.|+. ..++...+.+.+.|+|+.|..+
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd-~C~~~~H~~C~~--------p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICD-KCGQGYHQLCHT--------PHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECS-SSCCEEETTTSS--------SCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECC-CCChHHHhhhCC--------CcccccccCCCCCEECCCCcCc
Confidence 457899999987 8899999 599999999743 2333322225789999999864
No 18
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.18 E-value=7.5e-07 Score=76.14 Aligned_cols=48 Identities=29% Similarity=0.508 Sum_probs=38.6
Q ss_pred CCccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 215 YFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 215 ~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
.+..|.+|+++|+||+||+ |.++||+.|+. .+++.. +.+.|+|+.|..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~-C~~~~H~~Cl~--------P~l~~~---P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTH-CAAAFHWRCHF--------PAGTSR---PGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCCTTCEECSS-SCCEECHHHHC--------TTTCCC---CSSSCCCTTTTT
T ss_pred CCCCcCCCCCCCeEEECCC-CCCceecccCC--------CccCcC---CCCCEECccccC
Confidence 4577999999999999994 99999999753 344332 468999999974
No 19
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.17 E-value=6.1e-07 Score=80.54 Aligned_cols=47 Identities=36% Similarity=0.737 Sum_probs=38.3
Q ss_pred CCccccccCCCC-----ceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 215 YFAVCAICDDGG-----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 215 ~d~VCaICe~gG-----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
.+.+|.+|.++| +||+||+ |.++||+.| +|++. + +.+.|+|+.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~-C~~~fH~~C----------l~p~~--v-P~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDM-CNLAVHQEC----------YGVPY--I-PEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSS-SCCCCCHHH----------HTCSS--C-CSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCC-CCchhhccc----------CCCCc--c-CCCceECccccCc
Confidence 468999999987 8999994 999999996 45542 2 4689999999853
No 20
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=78.90 Aligned_cols=53 Identities=23% Similarity=0.578 Sum_probs=40.1
Q ss_pred ccCCCCccccccCCCCc---eeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 211 KDENYFAVCAICDDGGD---VTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 211 edd~~d~VCaICe~gGe---LL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
.+...+.+|.+|.++++ ||+||+ |.++||+.|+.+ .++. + +.+.|+|+.|..+
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~-C~~~~H~~Cl~P--------pl~~--~-P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDG-CDDNYHIFCLLP--------PLPE--I-PRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTT-TCCEECSSSSSS--------CCSS--C-CSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCC-CCchhccccCCC--------Cccc--C-CCCCcCCccCcCc
Confidence 34455788999999875 999995 999999997432 2432 2 4689999999854
No 21
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.07 E-value=7.6e-07 Score=77.10 Aligned_cols=48 Identities=35% Similarity=0.749 Sum_probs=38.5
Q ss_pred CCCccccccCCCC-----ceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 214 NYFAVCAICDDGG-----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 214 ~~d~VCaICe~gG-----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
..+.+|.+|.+++ +||+|| .|.++||+.| +|++. + +.+.|+|+.|..+
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD-~C~~~~H~~C----------l~~~~--v-P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCD-MCNLAVHQEC----------YGVPY--I-PEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECS-SSCCEEEHHH----------HTCSS--C-CSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECC-CCCCcccccc----------CCCCc--C-CCCCcCCccCcCc
Confidence 4478999999875 799999 5999999996 45543 2 4689999999753
No 22
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.05 E-value=2.3e-06 Score=86.21 Aligned_cols=48 Identities=21% Similarity=0.573 Sum_probs=39.4
Q ss_pred CccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 216 FAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 216 d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
++.|.+|+++|+||+||| |.++||..|+. .+++.. +.+.|+|+.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd~-C~~~~H~~Cl~--------p~l~~~---p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQ-CEFCFHLDCHL--------PALQDV---PGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTT-TCCBCCSTTST--------TCCSSC---CCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCC-CCchhccccCC--------CCcccC---CCCCCCCcCccCC
Confidence 678999999999999995 99999999753 244432 4689999999865
No 23
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.05 E-value=9.2e-07 Score=85.99 Aligned_cols=56 Identities=25% Similarity=0.581 Sum_probs=41.7
Q ss_pred cCCCCccccccCCCCceeecCcccccccccccccCccccccccCCcc-ccc-CCCCceecccccc
Q 002824 212 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQ-AQI-DAVPNFLCQNCVY 274 (876)
Q Consensus 212 dd~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~-~ev-~~~~~W~C~eC~~ 274 (876)
++.++++|.+|.+||+||+|| .|+|+||..|+.. .|+-.. ..+ .+.+.|.|+.|..
T Consensus 59 ~Dg~~d~C~vC~~GG~LlcCD-~Cpr~Fh~~Cl~p------~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNLICCD-FCHNAFCKKCILR------NLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSEEECS-SSCCEEEHHHHHH------HTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcEEeCC-CCCCeeeHhhcCC------CCChhhhhhcccCCCCCEeecccC
Confidence 466789999999999999999 6999999998642 122100 111 2578999998873
No 24
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.99 E-value=5.1e-06 Score=71.92 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=37.3
Q ss_pred CCCccccccCC--CCceeecCc-ccc-cccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 214 NYFAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 214 ~~d~VCaICe~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
....+| +|.+ .|+||.||+ .|. .+||..| +|++..+ .+.|+|+.|..+
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~C----------vgl~~~p---~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFAC----------VGLTTKP---RGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTT----------TTCSSCC---SSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEeccc----------CCcCcCC---CCCEECCCCCcc
Confidence 346788 8988 689999994 288 6999996 6776543 589999999753
No 25
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.97 E-value=8.7e-06 Score=73.79 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=37.2
Q ss_pred CCCccccccCC--CCceeecCc-ccc-cccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 214 NYFAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 214 ~~d~VCaICe~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
....+| +|.+ .|+||.||+ .|. .+||..| +|++..+ .+.|+|+.|..+
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~C----------Vgl~~~p---~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFAC----------VGLTTKP---RGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTT----------TTCSSCC---CSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEeccc----------CCcCcCC---CCCEECcCccCc
Confidence 346778 9988 689999994 287 6999996 6776543 589999999753
No 26
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.88 E-value=4.1e-06 Score=67.35 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=35.0
Q ss_pred cccccCCCC---ceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 218 VCAICDDGG---DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 218 VCaICe~gG---eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
+|.+|.++| +||.|| .|.++||+.|+. .+++.. +.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~--------p~l~~~---P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLR--------PALYEV---PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHC--------TTCCSC---CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCC--------CCcCCC---CCCcEECcCccc
Confidence 699998765 699999 599999999753 344432 368999999974
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.87 E-value=3e-06 Score=73.19 Aligned_cols=49 Identities=22% Similarity=0.541 Sum_probs=37.9
Q ss_pred CCccccccCCC--C-ceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 215 YFAVCAICDDG--G-DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 215 ~d~VCaICe~g--G-eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
...+|.+|..+ | .||.||+ |.++||..| +|++..+. +.+.|+|+.|..+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~-C~~wfH~~C----------v~~~~~~~-~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDD-CDDWYHWPC----------VGIMAAPP-EEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSS-SSSEEEHHH----------HTCSSCCC-SSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCC-CCccccccc----------CCCCccCC-CCCCEEChhccCc
Confidence 36789999876 3 6999995 999999996 56654443 3579999999753
No 28
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.87 E-value=3.3e-06 Score=75.72 Aligned_cols=52 Identities=19% Similarity=0.475 Sum_probs=39.0
Q ss_pred CCccccccCCC-----CceeecCcccccccccccccCccccccccCCccccc-CCCCceeccccccc
Q 002824 215 YFAVCAICDDG-----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQI-DAVPNFLCQNCVYQ 275 (876)
Q Consensus 215 ~d~VCaICe~g-----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev-~~~~~W~C~eC~~g 275 (876)
.+.+|.+|.++ +.||+||+ |.+.||+.|+. ..++..++ .+.+.|+|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~-C~~~yH~~Cl~--------Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQE-CHNLYHQDCHK--------PQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSS-SCCEEETTTSS--------SCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCC-CCCeEcCccCC--------CcccccccCCCCCCeeCccccch
Confidence 37899999987 67999995 99999999753 23332211 25789999999853
No 29
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.84 E-value=1.9e-06 Score=82.65 Aligned_cols=57 Identities=25% Similarity=0.553 Sum_probs=42.1
Q ss_pred ccCCCCccccccCCCCceeecCcccccccccccccCccccccccCCc-cccc-CCCCceecccccc
Q 002824 211 KDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYT-QAQI-DAVPNFLCQNCVY 274 (876)
Q Consensus 211 edd~~d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT-~~ev-~~~~~W~C~eC~~ 274 (876)
+++.++++|.+|.+||+|++|| .|+|+||..|+.. .+|-. ...+ .+.+.|.|..|..
T Consensus 52 d~Dg~~~~C~vC~dGG~LlcCd-~Cpr~Fc~~Cl~~------~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGGNLICCD-FCHNAFCKKCILR------NLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCCSEEEECS-SSSCEEEHHHHHH------HTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCCCeeEecC-CCchhhhHHHhCC------CcchhHHHHhccCCCCeEcCCcCC
Confidence 3467789999999999999999 6999999998642 12211 0112 2478999999874
No 30
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.77 E-value=6.4e-06 Score=69.53 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=36.1
Q ss_pred CccccccCC--CCceeecCc-ccc-cccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 216 FAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 216 d~VCaICe~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
..+| +|.+ .|+||.||+ .|+ ++||..| +|++.. +.+.|+|+.|..
T Consensus 11 ~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~C----------vgl~~~---p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSC----------VSLTYK---PKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGG----------GTCSSC---CSSCCCCHHHHT
T ss_pred CcEE-ECCCCCCCCeeeeeCCCCCcccEeccc----------CCcCcC---CCCCEECcCccc
Confidence 5678 9998 789999994 166 9999996 677754 368999999975
No 31
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.70 E-value=8.8e-06 Score=68.10 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=35.6
Q ss_pred CccccccCC--CCceeecCcc-cc-cccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 216 FAVCAICDD--GGDVTFCDGR-CL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 216 d~VCaICe~--gGeLL~CdG~-C~-RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
..+| +|.+ .|+||.||+. |. ++||..| +|++..+ .+.|+|+.|..
T Consensus 10 ~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~C----------vgl~~~p---~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFAC----------VGLTTKP---RGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGG----------GTCSSCC---SSCCCCHHHHC
T ss_pred CCEE-ECCCcCCCCEEEeCCCCCCCceEehhc----------CCCCcCC---CCCEECcCccC
Confidence 5677 8987 6899999952 77 7999996 6776543 58999999974
No 32
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.69 E-value=9.6e-06 Score=67.78 Aligned_cols=45 Identities=27% Similarity=0.655 Sum_probs=35.8
Q ss_pred CccccccCC--CCceeecCc-ccc-cccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 216 FAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 216 d~VCaICe~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
..+| +|.+ +|+||.||+ .|. .+||..| +|++..+ .+.|+|+.|..
T Consensus 9 ~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~C----------vgl~~~p---~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSYGEMIGCDNPDCPIEWFHFAC----------VDLTTKP---KGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGG----------GTCSSCC---SSCCCCHHHHC
T ss_pred CcEE-ECCCCCCCCeeEeeCCCCCCCCEeccc----------CCcccCC---CCCEECcCccC
Confidence 5677 9988 789999994 288 5999996 6777543 57999999974
No 33
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=2.5e-05 Score=68.62 Aligned_cols=47 Identities=17% Similarity=0.489 Sum_probs=35.7
Q ss_pred CccccccCC---CCceeecCcccccccccccccCccccccccCCcccccCCCC-ceecccccc
Q 002824 216 FAVCAICDD---GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVP-NFLCQNCVY 274 (876)
Q Consensus 216 d~VCaICe~---gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~-~W~C~eC~~ 274 (876)
+.+|.+|+. +|+||.|| .|.++||+.|+.+ .++. + +.+ .|+|+.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD-~C~~~yH~~Cl~P--------pl~~--~-P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCD-ECNVAYHIYCLNP--------PLDK--V-PEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECS-SSCCEEETTSSSS--------CCSS--C-CCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcC-CCCccccccccCC--------CccC--C-CCCCCcCCcCccC
Confidence 458999984 68899999 5999999997532 2332 2 356 899999973
No 34
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.60 E-value=2.5e-05 Score=67.27 Aligned_cols=45 Identities=22% Similarity=0.623 Sum_probs=33.8
Q ss_pred cccccC---CCCceeecCcccccccccccccCccccccccCCcccccCCCC-ceecccccc
Q 002824 218 VCAICD---DGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVP-NFLCQNCVY 274 (876)
Q Consensus 218 VCaICe---~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~-~W~C~eC~~ 274 (876)
.|.+|+ ++|+||.|| .|.++||+.|+.+ .++. + +.+ .|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD-~C~~~yH~~Cl~P--------pl~~--~-P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD-ECDMAFHIYCLDP--------PLSS--V-PSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECT-TTCCEEEGGGSSS--------CCSS--C-CSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcC-CCCCceecccCCC--------CcCC--C-CCCCCcCCcCccC
Confidence 677888 467899999 5999999997432 2432 2 356 999999974
No 35
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.57 E-value=2.9e-05 Score=65.04 Aligned_cols=50 Identities=22% Similarity=0.517 Sum_probs=38.8
Q ss_pred CCccccccCCC----CceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 215 YFAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 215 ~d~VCaICe~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
.+.+|.+|..+ +.+|.|| .|.++||..| +|++..+.+....|+|+.|..+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~C----------vgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCD-LCEMWFHGKC----------VKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECS-SSCCEEETTT----------TTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEcc-CCCCCCCccc----------cCcChhHhcCCCcEECCCCcCc
Confidence 36789999864 5699999 6999999996 5776554433578999999753
No 36
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.56 E-value=5.1e-05 Score=69.22 Aligned_cols=45 Identities=27% Similarity=0.685 Sum_probs=34.2
Q ss_pred CccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccc
Q 002824 216 FAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCV 273 (876)
Q Consensus 216 d~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~ 273 (876)
.-+|..|+++|.||+|+ .|.++||..| +|++..++ .+.|+|+.|.
T Consensus 30 rCiC~~~~~~~~mi~Cd-~C~~w~H~~C----------~~~~~~~~--p~~w~C~~C~ 74 (98)
T 2lv9_A 30 RCICGFTHDDGYMICCD-KCSVWQHIDC----------MGIDRQHI--PDTYLCERCQ 74 (98)
T ss_dssp CCTTSCCSCSSCEEEBT-TTCBEEETTT----------TTCCTTSC--CSSBCCTTTS
T ss_pred EeECCCccCCCcEEEcC-CCCCcCcCcC----------CCCCccCC--CCCEECCCCc
Confidence 34677777788999999 5999999996 45544443 2479999997
No 37
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.55 E-value=3e-05 Score=70.16 Aligned_cols=44 Identities=30% Similarity=0.679 Sum_probs=34.9
Q ss_pred CccccccCC--CCceeecCcc-cc-cccccccccCccccccccCCcccccCCCCceeccc-cc
Q 002824 216 FAVCAICDD--GGDVTFCDGR-CL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQN-CV 273 (876)
Q Consensus 216 d~VCaICe~--gGeLL~CdG~-C~-RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~e-C~ 273 (876)
..+| +|.+ .|+||.||+. |. .+||..| +||+..+ .+.|+|+. |.
T Consensus 26 ~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~C----------Vgl~~~p---~~~W~Cp~cC~ 74 (90)
T 2jmi_A 26 EVYC-FCRNVSYGPMVACDNPACPFEWFHYGC----------VGLKQAP---KGKWYCSKDCK 74 (90)
T ss_dssp SCCS-TTTCCCSSSEECCCSSSCSCSCEETTT----------SSCSSCT---TSCCCSSHHHH
T ss_pred CcEE-EeCCCCCCCEEEecCCCCccccCcCcc----------CCCCcCC---CCCccCChhhc
Confidence 6778 8986 5789999963 55 8999996 6787543 57999999 86
No 38
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.33 E-value=8.6e-05 Score=77.16 Aligned_cols=47 Identities=19% Similarity=0.559 Sum_probs=33.3
Q ss_pred CccccccCC---CCceeecCcccccccccccccCccccccccCCcccccCCCC-ceecccccc
Q 002824 216 FAVCAICDD---GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVP-NFLCQNCVY 274 (876)
Q Consensus 216 d~VCaICe~---gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~-~W~C~eC~~ 274 (876)
+..|.+|+. +|.||+||| |.++||+.|+.+ .++. + |.+ .|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~-C~~~yH~~CL~P--------PL~~--v-P~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDE-CDMAFHIYCLDP--------PLSS--V-PSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSS-SCCEECSCC--C--------CCCS--C-CSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCC-CCcceeCccCCC--------Cccc--C-CCCCCCCCcCCcC
Confidence 558999986 578999995 999999997532 2432 2 356 999999974
No 39
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.30 E-value=2.7e-05 Score=71.95 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=39.1
Q ss_pred CccccccCCC----CceeecCcccccccccccccCccccccccCCccccc-----CCCCceeccccccc
Q 002824 216 FAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQI-----DAVPNFLCQNCVYQ 275 (876)
Q Consensus 216 d~VCaICe~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev-----~~~~~W~C~eC~~g 275 (876)
...|.+|.++ |+++.|++.|.++||..| +|++.... .+...|+|+.|...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~C----------Vglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHREC----------TGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGG----------TTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCccccccccc----------CCcCHHHHHhhccCCCCCEECccccCc
Confidence 4679999876 679999867999999996 67776331 23579999999864
No 40
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.29 E-value=0.0006 Score=78.65 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=75.8
Q ss_pred cccCcccchhhhHHHHHHhhcccc--ccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------
Q 002824 676 TSFGRHFTKVEKLKEIVDRLHWYV--RSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP------------- 740 (876)
Q Consensus 676 ~s~grhft~~ekl~~i~~~l~~~~--~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~------------- 740 (876)
.+.|.+||+.+-..-+|+-+.... .+|.+|+|.|||+..|.-.+-+.+.+.+. ..+--.|+-+.
T Consensus 194 k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~-~~i~G~Eid~~~~~lA~~Nl~l~g 272 (542)
T 3lkd_A 194 KKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQT-VVYFGQELNTSTYNLARMNMILHG 272 (542)
T ss_dssp -CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTT-CEEEEEESCHHHHHHHHHHHHHTT
T ss_pred ccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccC-ceEEEEECcHHHHHHHHHHHHHcC
Confidence 468999999997777777765443 47899999999999998887776542221 11111111100
Q ss_pred --CCCCccccccccccC-CCCCCCCCceeeecCCCcchhhh----h------------------HHHHHHhhhhc-C-C-
Q 002824 741 --KNDFSFEKRDWMTVR-PEELPDGSQLIMGLNPPFGVKAS----L------------------ANKFISQALKF-K-P- 792 (876)
Q Consensus 741 --~~~~~f~~~~w~~~~-~~~l~~g~~li~glnppfg~~~~----~------------------a~kfi~~~~~f-~-p- 792 (876)
.+++++...|.+... |......=-+|+| ||||+.+.. + .--|+.|++.. + |
T Consensus 273 i~~~~~~I~~gDtL~~d~p~~~~~~fD~Iva-NPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g 351 (542)
T 3lkd_A 273 VPIENQFLHNADTLDEDWPTQEPTNFDGVLM-NPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN 351 (542)
T ss_dssp CCGGGEEEEESCTTTSCSCCSSCCCBSEEEE-CCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred CCcCccceEecceecccccccccccccEEEe-cCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence 022344444444432 2211223457888 999985431 0 01389999876 3 3
Q ss_pred cEEEEecCccc
Q 002824 793 KLIVLIVPQET 803 (876)
Q Consensus 793 ~~~~li~p~~~ 803 (876)
-.+++|+|..+
T Consensus 352 Gr~a~VlP~g~ 362 (542)
T 3lkd_A 352 GVMAIVLPHGV 362 (542)
T ss_dssp CEEEEEEETHH
T ss_pred eeEEEEecchH
Confidence 37788889875
No 41
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.29 E-value=0.0001 Score=64.39 Aligned_cols=49 Identities=18% Similarity=0.479 Sum_probs=36.7
Q ss_pred CCccccccCCC---CceeecCc-ccccccccccccCccccccccCCccccc----CCCCceecccccc
Q 002824 215 YFAVCAICDDG---GDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQAQI----DAVPNFLCQNCVY 274 (876)
Q Consensus 215 ~d~VCaICe~g---GeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlT~~ev----~~~~~W~C~eC~~ 274 (876)
...+| +|+.. |.+|.||+ .|..+||..| +|++..+. .....|+|+.|..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~C----------Vgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGC----------VILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHH----------HSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEE----------EccccccccccccCCCCEECCCCCc
Confidence 45677 78765 78999995 5999999996 57765432 1247899999975
No 42
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=97.27 E-value=0.00049 Score=78.94 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=39.0
Q ss_pred cCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcC
Q 002824 678 FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMG 727 (876)
Q Consensus 678 ~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~ 727 (876)
.|.+||+.+-.+-+|+-+.. ++|++|+|.|||+..|.--.-+.+.+.+
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~p--~~~~~I~DPacGsGgfL~~a~~~l~~~~ 243 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMDP--QLGESVLDPACGTGGFLVEAFEHLERQC 243 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTC
T ss_pred CceECCcHHHHHHHHHhhcc--CCCCEEEeCCCCcchHHHHHHHHHHHhc
Confidence 69999999988888887764 5799999999999999876666655433
No 43
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.26 E-value=3.5e-05 Score=75.86 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=38.0
Q ss_pred CCccccccCCC----CceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 215 YFAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 215 ~d~VCaICe~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
...+| +|+.+ |.+|+|| .|.++||..| +|++..+....+.|+|+.|...
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~C----------v~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCD-RCQNWYHGRC----------VGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECT-TTCCEEEHHH----------HTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECC-CCCchhChhh----------cCCchhhccCccCeecCCCcch
Confidence 46789 99875 4599999 5999999996 5666554444679999999853
No 44
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.25 E-value=1.7e-05 Score=67.55 Aligned_cols=50 Identities=26% Similarity=0.653 Sum_probs=37.2
Q ss_pred CCCccccccCCCC----ceeecCcccccccccccccCccccccccCCccccc-----CCCCceeccccc
Q 002824 214 NYFAVCAICDDGG----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQI-----DAVPNFLCQNCV 273 (876)
Q Consensus 214 ~~d~VCaICe~gG----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev-----~~~~~W~C~eC~ 273 (876)
.....|.+|.++. .+|.|||.|.++||..| +|+|..+. .+...|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C----------vglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC----------TGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH----------HTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhc----------cCCCHHHHHHhhccCCCcEECcCcc
Confidence 3467899999862 49999977999999996 67876432 245699999986
No 45
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.25 E-value=0.0001 Score=78.03 Aligned_cols=155 Identities=16% Similarity=0.232 Sum_probs=99.2
Q ss_pred cccCcccc-hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHH-----cCCcccccCCCCCCC--CCCCccc
Q 002824 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQ-----MGKSCSFRNYDLIQP--KNDFSFE 747 (876)
Q Consensus 676 ~s~grhft-~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~-----~~~~~~~kn~d~~~~--~~~~~f~ 747 (876)
.+||.||. .+.-+..|++.+. +.+|++|+|+.||...+...+-++... ++.+.+-.-.+.... ..++.|.
T Consensus 18 k~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i 95 (279)
T 3uzu_A 18 KRFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELH 95 (279)
T ss_dssp CCCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEE
T ss_pred ccCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEE
Confidence 48999996 4556777888875 468999999999999999998876432 111111100000000 2457778
Q ss_pred cccccccCCCCCCC----CCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCccc-cccccccc---c-------
Q 002824 748 KRDWMTVRPEELPD----GSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQET-RRLDQKAS---Y------- 812 (876)
Q Consensus 748 ~~~w~~~~~~~l~~----g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~~~-~~~~~~~~---y------- 812 (876)
..|.+.+...++.. +...|+| ||||.+-..+--+++.+... ..-++|++..|+ +||=.+.+ |
T Consensus 96 ~~D~~~~~~~~~~~~~~~~~~~vv~-NlPY~iss~il~~ll~~~~~--~~~~~~m~QkEva~Rl~A~pg~k~yg~lSv~~ 172 (279)
T 3uzu_A 96 AGDALTFDFGSIARPGDEPSLRIIG-NLPYNISSPLLFHLMSFAPV--VIDQHFMLQNEVVERMVAEPGTKAFSRLSVML 172 (279)
T ss_dssp ESCGGGCCGGGGSCSSSSCCEEEEE-ECCHHHHHHHHHHHGGGGGG--EEEEEEEEEHHHHHHHTCCTTSTTCCHHHHHH
T ss_pred ECChhcCChhHhcccccCCceEEEE-ccCccccHHHHHHHHhccCC--ccEEEEEeeHHHHHHHhCCCCCCcccHHHHHH
Confidence 88888887776643 3456777 99999655554444443222 256889999998 88744322 3
Q ss_pred --ceeecccccccCcccccCCcccc
Q 002824 813 --NLIWEDNEVLSGKSFYLPGSLDV 835 (876)
Q Consensus 813 --~l~~~d~~~l~g~~fy~pg~~d~ 835 (876)
-.-.+--..++..+|+=|--||.
T Consensus 173 q~~~~~~~~~~v~~~~F~P~PkVdS 197 (279)
T 3uzu_A 173 QYRYVMDKLIDVPPESFQPPPKVDS 197 (279)
T ss_dssp HHHEEEEEEEEECGGGEESCCSSCE
T ss_pred hhheEEEEEEEEChHHccCCCCCeE
Confidence 22233344578889987777763
No 46
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.00032 Score=61.56 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=35.0
Q ss_pred CceecCCcccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 336 ~~F~CPlH~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
..|.|+.-.|.+|+..++ ...|+.|+.|+.+||..||.+++.
T Consensus 20 ~~w~C~~c~C~vC~~~~~----~~~ll~CD~C~~~yH~~Cl~Ppl~ 61 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHE----PNMQLLCDECNVAYHIYCLNPPLD 61 (77)
T ss_dssp SSSCCSSSSCSSSCCCCC----STTEEECSSSCCEEETTSSSSCCS
T ss_pred CCeECCCCCCcCcCCcCC----CCCEEEcCCCCccccccccCCCcc
Confidence 357787778999998654 358999999999999999998764
No 47
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.06 E-value=0.00076 Score=73.11 Aligned_cols=121 Identities=23% Similarity=0.392 Sum_probs=76.4
Q ss_pred ccccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCCC----CCCcccc
Q 002824 673 MRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPK----NDFSFEK 748 (876)
Q Consensus 673 ~ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~~----~~~~f~~ 748 (876)
......|.+||+.+-...+++.+.. .++++|+|++||+..|...+.++. +.....--.|+-+.- ...+|..
T Consensus 13 ~~~~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~---~~~~~i~gvDi~~~~~~~a~~~~~~~ 87 (421)
T 2ih2_A 13 SAPRSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAH---GTAYRFVGVEIDPKALDLPPWAEGIL 87 (421)
T ss_dssp --------CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHH---CSCSEEEEEESCTTTCCCCTTEEEEE
T ss_pred hhcccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHh---CCCCeEEEEECCHHHHHhCCCCcEEe
Confidence 3456789999999888888887753 567899999999999999998774 222233333333211 3466777
Q ss_pred ccccccCCCCCCCCCceeeecCCCcchhhh----------------------------hHHHHHHhhhhc-CC-cEEEEe
Q 002824 749 RDWMTVRPEELPDGSQLIMGLNPPFGVKAS----------------------------LANKFISQALKF-KP-KLIVLI 798 (876)
Q Consensus 749 ~~w~~~~~~~l~~g~~li~glnppfg~~~~----------------------------~a~kfi~~~~~f-~p-~~~~li 798 (876)
.|..+..+. .+=-+|++ ||||+.... +...|+.+++.. +| -.+++|
T Consensus 88 ~D~~~~~~~---~~fD~Ii~-NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i 163 (421)
T 2ih2_A 88 ADFLLWEPG---EAFDLILG-NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 163 (421)
T ss_dssp SCGGGCCCS---SCEEEEEE-CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChhhcCcc---CCCCEEEE-CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 777765432 23457887 999985432 223788888754 33 367788
Q ss_pred cCcc
Q 002824 799 VPQE 802 (876)
Q Consensus 799 ~p~~ 802 (876)
+|..
T Consensus 164 ~p~~ 167 (421)
T 2ih2_A 164 VPAT 167 (421)
T ss_dssp EEGG
T ss_pred EChH
Confidence 8875
No 48
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.02 E-value=0.00012 Score=63.36 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=35.8
Q ss_pred CccccccCCC---CceeecCcccccccccccccCccccccccCCcccccC----CCCceeccccccc
Q 002824 216 FAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQID----AVPNFLCQNCVYQ 275 (876)
Q Consensus 216 d~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~----~~~~W~C~eC~~g 275 (876)
..+| +|+.+ +.+|.|+ .|..+||..| +|++..+.. ....|+|+.|...
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~C----------vgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDC----------VGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHH----------HSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeE----------EccchhhhhhccCCCCeEECcCCcCc
Confidence 5678 89875 5699999 5999999996 577654311 2478999999753
No 49
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.00 E-value=0.00027 Score=61.78 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=36.7
Q ss_pred CccccccCCC----CceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 216 FAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 216 d~VCaICe~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
..+| +|..+ +.+|.|| .|..+||..| +|++..+......|+|+.|...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~C----------vgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECG-LCQDWFHGSC----------VGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBT-TTCCEEEHHH----------HTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcC-CCCCcEEeee----------cCcccccccCCCeEECCCcccc
Confidence 4556 88764 5699999 5999999996 6777665444579999999854
No 50
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=96.97 E-value=0.0011 Score=76.17 Aligned_cols=176 Identities=19% Similarity=0.286 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhCCCC------hhhhhhcC-ChhhhhhHHHhhhccccc-c----cccccccccc------------ccC
Q 002824 624 VKAVRAALEMLDGGCD------IEDAKAVC-PPEILCQIFQWKRKLDVY-L----APFLHGMRYT------------SFG 679 (876)
Q Consensus 624 v~a~~~al~~l~~g~~------~~~aka~c-~p~~l~q~~~~~~kl~~~-l----~p~l~g~ry~------------s~g 679 (876)
.++++.+++.|+.... .+++...- ++..|.+|..-=+.+... + .|=+.|.=|- ..|
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~~iF~~~~~~~~~~~~L~~li~~i~~~~~~~~~~~~~~d~lG~~YE~ll~~~a~~~~~~~G 149 (541)
T 2ar0_A 70 LQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 149 (541)
T ss_dssp HHHHHHHHHHHTSSSCHHHHHHHTTCCCCCCCHHHHHHHHHHHHTCCC--------------------------------
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCHHHHHHHHHHHhhcCCcccccccChhHHHHHHHHHHHHHHHhccccCC
Confidence 4556666777764311 11221111 466777777654444321 1 3334444333 468
Q ss_pred cccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCc--------------ccccCCCCCC------
Q 002824 680 RHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKS--------------CSFRNYDLIQ------ 739 (876)
Q Consensus 680 rhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~--------------~~~kn~d~~~------ 739 (876)
.+||+.+-..-+|+-+.. .+|++|+|+|||+..|.-.+-+.+.+.+.. ..+--.|+-+
T Consensus 150 ~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 150 QYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred eeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 899998866667766654 578999999999999998887777654321 1111112110
Q ss_pred -------C-CC----CCccccccccccCCCCCCCCCceeeecCCCcchhhh-------------hHHHHHHhhhh-cCCc
Q 002824 740 -------P-KN----DFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKAS-------------LANKFISQALK-FKPK 793 (876)
Q Consensus 740 -------~-~~----~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~-------------~a~kfi~~~~~-f~p~ 793 (876)
. .+ ..++...|-+...+.... .=-+|+| ||||+.... ....|+.+++. .+|.
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~-~fD~Vv~-NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP-KAHIVAT-NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSC-CEEEEEE-CCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHhCCCccccccCCeEeCCCccccccccc-CCeEEEE-CCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 0 11 155655665543322111 2347777 999997632 23479999885 4664
Q ss_pred -EEEEecCccc
Q 002824 794 -LIVLIVPQET 803 (876)
Q Consensus 794 -~~~li~p~~~ 803 (876)
.+++|+|+.+
T Consensus 306 Gr~a~V~p~~~ 316 (541)
T 2ar0_A 306 GRAAVVVPDNV 316 (541)
T ss_dssp EEEEEEEEHHH
T ss_pred CEEEEEecCcc
Confidence 7788888774
No 51
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.93 E-value=0.00021 Score=57.91 Aligned_cols=44 Identities=27% Similarity=0.638 Sum_probs=33.0
Q ss_pred ccccCCC----CceeecCcccccccccccccCccccccccCCcccccCCCCceeccccc
Q 002824 219 CAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCV 273 (876)
Q Consensus 219 CaICe~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~ 273 (876)
|.+|..+ +.+|.|||.|..+||..| +|++..+.. ...|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~C----------vgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVC----------VGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTT----------TTCCHHHHH-HSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccc----------cCCCccccC-CCCEECCCCC
Confidence 6677664 349999977999999996 678765432 3789999884
No 52
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=96.93 E-value=0.00053 Score=60.26 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=36.5
Q ss_pred CceecCCcccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 336 ~~F~CPlH~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
..|.|+.-.|.+|+..++ ..+|+.|..|+++||..||.+++.
T Consensus 20 ~~W~C~~C~C~vC~~~~d----~~~ll~CD~C~~~yH~~Cl~PpL~ 61 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQD----PDKQLMCDECDMAFHIYCLDPPLS 61 (77)
T ss_dssp TTSCCTTTSBTTTCCCSC----GGGEEECTTTCCEEETTTSSSCCS
T ss_pred CCCCCCCCcCCccCCCCC----CcceeEeCCCCCccCcccCCCccc
Confidence 568999889999999765 348999999999999999998764
No 53
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=96.91 E-value=0.00049 Score=60.48 Aligned_cols=46 Identities=20% Similarity=0.593 Sum_probs=32.8
Q ss_pred ccccccCCC---CceeecCcccccccccccccCccccccccCCcccccCCCCc-eecccccc
Q 002824 217 AVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPN-FLCQNCVY 274 (876)
Q Consensus 217 ~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~-W~C~eC~~ 274 (876)
-.|.+|+.+ +.||+|| .|.++||+.|+.+ .++. + +.+. |+|+.|.+
T Consensus 27 C~C~vC~~~~d~~~ll~CD-~C~~~yH~~Cl~P--------pL~~--~-P~g~~W~C~~C~~ 76 (77)
T 3shb_A 27 CACHLCGGRQDPDKQLMCD-ECDMAFHIYCLDP--------PLSS--V-PSEDEWYCPECRN 76 (77)
T ss_dssp TSBTTTCCCSCGGGEEECT-TTCCEEETTTSSS--------CCSS--C-CSSSCCCCTTTC-
T ss_pred CcCCccCCCCCCcceeEeC-CCCCccCcccCCC--------cccC--C-CCCCceECcCccc
Confidence 367778766 4699999 5999999997532 2332 2 3456 99999974
No 54
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.91 E-value=0.00048 Score=59.23 Aligned_cols=47 Identities=28% Similarity=0.618 Sum_probs=34.9
Q ss_pred CCccccccCCC---C-ceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 215 YFAVCAICDDG---G-DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 215 ~d~VCaICe~g---G-eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
...+| +|+.+ | .+|.|| .|..+||..| +|++..+. ....|+|+.|..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd-~C~~W~H~~C----------vg~~~~~~-~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACD-GCGVWHHTRC----------IGINNADA-LPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECS-SSCEEEETTT----------TTCCTTSC-CCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECC-CCCCccCCee----------eccCcccc-CCCcEECCCccC
Confidence 35678 69764 4 499999 5999999996 56664322 247899999974
No 55
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.90 E-value=0.00078 Score=74.99 Aligned_cols=121 Identities=19% Similarity=0.337 Sum_probs=78.1
Q ss_pred cccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCC---------cccccCCCCCC-------
Q 002824 676 TSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGK---------SCSFRNYDLIQ------- 739 (876)
Q Consensus 676 ~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~---------~~~~kn~d~~~------- 739 (876)
...|.|||+.+-...+|+.+.+ .+|++|+|++||+..|...+.+.+.+... ...+--.|+-+
T Consensus 148 ~~~G~fyTP~~v~~~mv~~l~~--~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~ 225 (445)
T 2okc_A 148 SGAGQYFTPRPLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS 225 (445)
T ss_dssp TCCGGGCCCHHHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred ccCCcccCcHHHHHHHHHHhCC--CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHH
Confidence 4578999999977777777654 57899999999999999888777643210 01111112111
Q ss_pred -------CC-CCCccccccccccCCCCCCCCCceeeecCCCcchhhhh----------------HHHHHHhhhh-cCCc-
Q 002824 740 -------PK-NDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASL----------------ANKFISQALK-FKPK- 793 (876)
Q Consensus 740 -------~~-~~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~----------------a~kfi~~~~~-f~p~- 793 (876)
-. +..++...|.+...+.+ .=-+|++ ||||+..... ...|+.+++. .+|.
T Consensus 226 ~nl~l~g~~~~~~~i~~gD~l~~~~~~---~fD~Iv~-NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG 301 (445)
T 2okc_A 226 MNLYLHGIGTDRSPIVCEDSLEKEPST---LVDVILA-NPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGG 301 (445)
T ss_dssp HHHHHTTCCSSCCSEEECCTTTSCCSS---CEEEEEE-CCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHhCCCcCCCCEeeCCCCCCcccC---CcCEEEE-CCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCC
Confidence 00 14566666666544321 3457887 9999975432 1378999886 4664
Q ss_pred EEEEecCcc
Q 002824 794 LIVLIVPQE 802 (876)
Q Consensus 794 ~~~li~p~~ 802 (876)
.+++|+|..
T Consensus 302 ~~a~V~p~~ 310 (445)
T 2okc_A 302 RAAVVLPDN 310 (445)
T ss_dssp EEEEEEEHH
T ss_pred EEEEEECCc
Confidence 677888865
No 56
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=96.88 E-value=0.00061 Score=58.64 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=36.1
Q ss_pred CceecCCcccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 336 ~~F~CPlH~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
..|.|+.-.|.+|++.++ .+.|+.|+.|+++||..||.+++.
T Consensus 12 ~~w~C~~C~C~~C~~~~~----~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQD----PDKQLMCDECDMAFHIYCLDPPLS 53 (70)
T ss_dssp TTSCCTTTSBTTTCCCSC----GGGEEECTTTCCEEEGGGSSSCCS
T ss_pred CCeECCCCCCcCCCCcCC----CCCEEEcCCCCCceecccCCCCcC
Confidence 568999889999998764 358999999999999999998765
No 57
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.82 E-value=0.0023 Score=65.65 Aligned_cols=145 Identities=15% Similarity=0.259 Sum_probs=87.3
Q ss_pred cccCcccc-hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCC-----------CCCCC
Q 002824 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLI-----------QPKND 743 (876)
Q Consensus 676 ~s~grhft-~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~-----------~~~~~ 743 (876)
.+||.||. ...-+..|++.+. +.+|++|+|+.||...+...+-++. +..--.|+- ...++
T Consensus 6 k~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~ 77 (244)
T 1qam_A 6 IKHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC------NFVTAIEIDHKLCKTTENKLVDHDN 77 (244)
T ss_dssp ----CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS------SEEEEECSCHHHHHHHHHHTTTCCS
T ss_pred ccCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC------CeEEEEECCHHHHHHHHHhhccCCC
Confidence 57999985 4557778888776 4689999999999999998887652 111122221 11135
Q ss_pred CccccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCcc-ccccccccc-cceeec----
Q 002824 744 FSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQE-TRRLDQKAS-YNLIWE---- 817 (876)
Q Consensus 744 ~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~~-~~~~~~~~~-y~l~~~---- 817 (876)
+.|...|.+.+...+ .++-.|+| ||||.....+..+.+.+ ....-.+++++.| .+|+-...+ ..+++.
T Consensus 78 v~~~~~D~~~~~~~~--~~~~~vv~-nlPy~~~~~~l~~~l~~---~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~~~ 151 (244)
T 1qam_A 78 FQVLNKDILQFKFPK--NQSYKIFG-NIPYNISTDIIRKIVFD---SIADEIYLIVEYGFAKRLLNTKRSLALFLMAEVD 151 (244)
T ss_dssp EEEECCCGGGCCCCS--SCCCEEEE-ECCGGGHHHHHHHHHHS---CCCSEEEEEEEHHHHHHHTCTTSHHHHHHTTTEE
T ss_pred eEEEEChHHhCCccc--CCCeEEEE-eCCcccCHHHHHHHHhc---CCCCeEEEEEEHHHHHHHhcCCcchhHHhhhhEe
Confidence 677777777765321 23445666 99998766555554443 3456677788888 678765444 222221
Q ss_pred --ccccccCcccccCCccc
Q 002824 818 --DNEVLSGKSFYLPGSLD 834 (876)
Q Consensus 818 --d~~~l~g~~fy~pg~~d 834 (876)
.-..+....|+=|-.||
T Consensus 152 ~~~~~~v~~~~F~P~p~v~ 170 (244)
T 1qam_A 152 ISILSMVPREYFHPKPKVN 170 (244)
T ss_dssp EEEEEEECGGGSBSCCSSC
T ss_pred EEEEEEEChhhccCCCCce
Confidence 12235667787656666
No 58
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=96.78 E-value=0.0013 Score=75.71 Aligned_cols=143 Identities=20% Similarity=0.291 Sum_probs=82.7
Q ss_pred ChhhhhhHHHhhhccccccccccccccccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcC
Q 002824 648 PPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMG 727 (876)
Q Consensus 648 ~p~~l~q~~~~~~kl~~~l~p~l~g~ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~ 727 (876)
.+++|-.++-.= |.-|- .......|.+||+.+-.+-+|+-+.. ++| +|+|.|||+..|.-.+-+.+.+.+
T Consensus 201 ~~D~lG~~yE~l------l~~~a-~~~~k~~G~fyTP~~Vv~lmv~ll~p--~~~-~VlDPaCGSG~fLi~a~~~l~~~~ 270 (544)
T 3khk_A 201 SKDILGHVYEYF------LGQFA-LAEGKQGGQYYTPKSIVTLIVEMLEP--YKG-RVYDPAMGSGGFFVSSDKFIEKHA 270 (544)
T ss_dssp -CCSHHHHHHHH------HHHHH-HTTTCCSTTTCCCHHHHHHHHHHHCC--CSE-EEEESSCTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHH------HHHHH-HhhCccCCeEeCCHHHHHHHHHHHhc--CCC-eEeCcccCcCcHHHHHHHHHHHhc
Confidence 566676666541 11110 12234679999999988888887764 345 999999999999877766554322
Q ss_pred C-----------cccccCCCCCC------------C--CCCCccccccccccCCCCCCC-CCceeeecCCCcchhh----
Q 002824 728 K-----------SCSFRNYDLIQ------------P--KNDFSFEKRDWMTVRPEELPD-GSQLIMGLNPPFGVKA---- 777 (876)
Q Consensus 728 ~-----------~~~~kn~d~~~------------~--~~~~~f~~~~w~~~~~~~l~~-g~~li~glnppfg~~~---- 777 (876)
. ...+--.|+-+ . ...+++...|.+.-.. .+. .=-+|++ ||||+.+.
T Consensus 271 ~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~--~~~~~fD~Iv~-NPPf~~~~~~~~ 347 (544)
T 3khk_A 271 NVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ--HPDLRADFVMT-NPPFNMKDWWHE 347 (544)
T ss_dssp HHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS--CTTCCEEEEEE-CCCSSCCSCCCG
T ss_pred cccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc--cccccccEEEE-CCCcCCccccch
Confidence 1 11111122211 0 1123335556554322 122 3347888 99999741
Q ss_pred h------------------h-----H-HHHHHhhhhc-CCc-EEEEecCccc
Q 002824 778 S------------------L-----A-NKFISQALKF-KPK-LIVLIVPQET 803 (876)
Q Consensus 778 ~------------------~-----a-~kfi~~~~~f-~p~-~~~li~p~~~ 803 (876)
. + | --||.+++.. +|. .+++|+|...
T Consensus 348 ~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~ 399 (544)
T 3khk_A 348 KLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS 399 (544)
T ss_dssp GGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred hhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence 0 1 1 1599998865 454 6778888765
No 59
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.75 E-value=0.00092 Score=60.30 Aligned_cols=46 Identities=24% Similarity=0.560 Sum_probs=35.3
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcccccccchhhhhhhhccCCCCceeEEccCCccc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKII 413 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~f~~~~~e~~~raW~~ll~~~riLI~C~kH~i~ 413 (876)
+|.+|+.++ .|+.|..||++||..|+.+++... | ..-|+|+.|...
T Consensus 27 ~C~vC~~~g-------~LL~CD~C~~~fH~~Cl~PpL~~~---------------P--~g~W~C~~C~~~ 72 (88)
T 1fp0_A 27 ICRVCQKPG-------DLVMCNQCEFCFHLDCHLPALQDV---------------P--GEEWSCSLCHVL 72 (88)
T ss_dssp CCSSSCSSS-------CCEECTTSSCEECTTSSSTTCCCC---------------C--SSSCCCCSCCCC
T ss_pred cCcCcCCCC-------CEEECCCCCCceecccCCCCCCCC---------------c--CCCcCCccccCC
Confidence 689999864 599999999999999998876421 2 224778888754
No 60
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.73 E-value=0.00043 Score=59.71 Aligned_cols=46 Identities=30% Similarity=0.754 Sum_probs=34.6
Q ss_pred CccccccCC--CCceeecCcc-c-ccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 216 FAVCAICDD--GGDVTFCDGR-C-LRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 216 d~VCaICe~--gGeLL~CdG~-C-~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
..+| +|.+ .|.||.||+. | ..+||..| +|++.. +.+.|+|+.|...
T Consensus 6 ~~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~C----------vgl~~~---p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 6 SGYC-ICNQVSYGEMVGCDNQDCPIEWFHYGC----------VGLTEA---PKGKWYCPQCTAA 55 (70)
T ss_dssp CCCS-TTSCCCCSSEECCSCTTCSCCCEEHHH----------HTCSSC---CSSCCCCHHHHHH
T ss_pred CeEE-EcCCCCCCCEeEeCCCCCCccCCcccc----------cccCcC---CCCCEECCCCCcc
Confidence 4566 4875 4789999964 5 38999996 677654 3689999999753
No 61
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.72 E-value=0.0025 Score=64.91 Aligned_cols=150 Identities=16% Similarity=0.275 Sum_probs=91.0
Q ss_pred cccCccc-chhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH-HHcCCcccccCCCCCCC----CCCCccccc
Q 002824 676 TSFGRHF-TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL-EQMGKSCSFRNYDLIQP----KNDFSFEKR 749 (876)
Q Consensus 676 ~s~grhf-t~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~-~~~~~~~~~kn~d~~~~----~~~~~f~~~ 749 (876)
.+||.|| +....+..|++.+. +.+|++|+|+.||...+...+.++. .-+|.+.+-...+.... .+.+.|...
T Consensus 5 k~~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~ 82 (245)
T 1yub_A 5 IKYSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQ 82 (245)
T ss_dssp CCSCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCS
T ss_pred cccCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEEC
Confidence 5799976 55668889999886 5789999999999999999987762 11222222222222221 134566677
Q ss_pred cccccCCCCCCC-CCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCcc-ccccccccc--cceee-----cccc
Q 002824 750 DWMTVRPEELPD-GSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQE-TRRLDQKAS--YNLIW-----EDNE 820 (876)
Q Consensus 750 ~w~~~~~~~l~~-g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~~-~~~~~~~~~--y~l~~-----~d~~ 820 (876)
|..++. ++. ++..|++ ||||.....+......| ......+|+++.+ ..|+=+..+ +-+.+ +--.
T Consensus 83 D~~~~~---~~~~~~f~vv~-n~Py~~~~~~~~~~~~~---~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~~~~~~~~ 155 (245)
T 1yub_A 83 DILQFQ---FPNKQRYKIVG-NIPYHLSTQIIKKVVFE---SRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLL 155 (245)
T ss_dssp CCTTTT---CCCSSEEEEEE-ECCSSSCHHHHHHHHHH---CCCEEEEEEEESSHHHHHHCGGGSHHHHTTTTBCCCEEE
T ss_pred ChhhcC---cccCCCcEEEE-eCCccccHHHHHHHHhC---CCCCeEEEEeeHHHHHHHhCCCCchhhhheeheeEEEEE
Confidence 776654 332 4555666 99999876665555544 3345566667776 666654433 21111 1112
Q ss_pred cccCcccccCCccc
Q 002824 821 VLSGKSFYLPGSLD 834 (876)
Q Consensus 821 ~l~g~~fy~pg~~d 834 (876)
.+...+|+-+..||
T Consensus 156 ~v~~~~f~P~p~v~ 169 (245)
T 1yub_A 156 KLPAECFHPKPKVN 169 (245)
T ss_dssp EECCTTSBSSCCSC
T ss_pred EECchhccCCCCce
Confidence 34556676655555
No 62
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.59 E-value=0.00097 Score=56.83 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=34.1
Q ss_pred ccccccCC---CCceeecCc-ccccccccccccCccccccccCCcccccC---CCCceecccccc
Q 002824 217 AVCAICDD---GGDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQAQID---AVPNFLCQNCVY 274 (876)
Q Consensus 217 ~VCaICe~---gGeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~---~~~~W~C~eC~~ 274 (876)
..| +|+. .|.+|.|++ .|..+||..| +|++..+.. ....|+|+.|+.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~C----------vgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNC----------VLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTT----------SCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhh----------CCCCcccccccCCCCcEECcCccC
Confidence 446 6854 578999996 6999999996 677654321 125799999974
No 63
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=96.49 E-value=0.0017 Score=69.52 Aligned_cols=144 Identities=16% Similarity=0.214 Sum_probs=79.7
Q ss_pred ChhhhhhHHHhhhccccccccccccccccccCcccchhhhHHHHHHhhcccc--ccCCeEEeeccCcchhhHHHHHHHHH
Q 002824 648 PPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYV--RSGDTIVDFCCGANDFSCMMKVKLEQ 725 (876)
Q Consensus 648 ~p~~l~q~~~~~~kl~~~l~p~l~g~ry~s~grhft~~ekl~~i~~~l~~~~--~~~d~~vd~~cg~~~f~~l~~~~~~~ 725 (876)
.++.+..++..- +..+.. -...+|.|||+.+-..-++.-+-+.. .++.+|+|++||+..|...+-+.+.+
T Consensus 83 ~~~~~g~~ye~~------~~~~~~--~~~~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~ 154 (344)
T 2f8l_A 83 SNEEIRKGLQLA------LLKGMK--HGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLEL 154 (344)
T ss_dssp CHHHHHHHHHHH------HHHHTS--SSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHH------HHHHhh--cccccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHH
Confidence 566776666551 112221 11245888888753322222222322 35789999999999999888877654
Q ss_pred c-CCcccccCCCCCCC------------CCCCccccccccccCCCCCCCCCceeeecCCCcchhhh--------------
Q 002824 726 M-GKSCSFRNYDLIQP------------KNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKAS-------------- 778 (876)
Q Consensus 726 ~-~~~~~~kn~d~~~~------------~~~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~-------------- 778 (876)
. +....+--.|+-+. .-+.+|...|+++..+ ...=-+|++ |||||....
T Consensus 155 ~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~---~~~fD~Ii~-NPPfg~~~~~~~~~~~~~~~~~g 230 (344)
T 2f8l_A 155 KGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLL---VDPVDVVIS-DLPVGYYPDDENAKTFELCREEG 230 (344)
T ss_dssp TSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCC---CCCEEEEEE-ECCCSEESCHHHHTTSTTCCSSS
T ss_pred hcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccc---cCCccEEEE-CCCCCCcCchhhhhhccccCCCC
Confidence 2 11111111121110 0135666677665321 123357777 999986421
Q ss_pred ---hHHHHHHhhhhc-CCc-EEEEecCccc
Q 002824 779 ---LANKFISQALKF-KPK-LIVLIVPQET 803 (876)
Q Consensus 779 ---~a~kfi~~~~~f-~p~-~~~li~p~~~ 803 (876)
....|+.+++.. +|. .+++|+|...
T Consensus 231 ~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~ 260 (344)
T 2f8l_A 231 HSFAHFLFIEQGMRYTKPGGYLFFLVPDAM 260 (344)
T ss_dssp CEEHHHHHHHHHHHTEEEEEEEEEEEEGGG
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEEECchh
Confidence 112689888754 565 7778887653
No 64
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.45 E-value=0.00085 Score=53.76 Aligned_cols=34 Identities=35% Similarity=0.862 Sum_probs=28.6
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
.|.+|+..++ +..|+.|+.|+++||..|+.+++.
T Consensus 2 ~C~vC~~~~~----~~~ll~Cd~C~~~~H~~Cl~p~l~ 35 (51)
T 1f62_A 2 RCKVCRKKGE----DDKLILCDECNKAFHLFCLRPALY 35 (51)
T ss_dssp CCTTTCCSSC----CSCCEECTTTCCEECHHHHCTTCC
T ss_pred CCCCCCCCCC----CCCEEECCCCChhhCcccCCCCcC
Confidence 4889998764 348999999999999999987764
No 65
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.43 E-value=0.0012 Score=68.53 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=33.1
Q ss_pred CceecCCcccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 336 ~~F~CPlH~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
..|.|+.-.|..|+...+ ...|+.|..|+.+||..||.+++.
T Consensus 168 ~~w~C~~c~C~vC~~~~~----~~~lL~CD~C~~~yH~~CL~PPL~ 209 (226)
T 3ask_A 168 VNRLCRVCACHLCGGRQD----PDKQLMCDECDMAFHIYCLDPPLS 209 (226)
T ss_dssp TTSCCTTTSCSSSCCCCC------CCEECSSSCCEECSCC--CCCC
T ss_pred cCEecCCCCCcCCCCCCC----CCCeEEcCCCCcceeCccCCCCcc
Confidence 358898889999998654 348999999999999999988764
No 66
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.42 E-value=0.0013 Score=58.95 Aligned_cols=62 Identities=16% Similarity=0.351 Sum_probs=41.2
Q ss_pred ccCCCCccccccC--CCCceeecCcccccccccccccCccccc--cccCCcccccCCCCceecccccc
Q 002824 211 KDENYFAVCAICD--DGGDVTFCDGRCLRSFHATITAGKNALC--QSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 211 edd~~d~VCaICe--~gGeLL~CdG~C~RsFH~~Cl~g~~s~C--~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
|+..+|+.|.||+ ..++|+.|. .|.|.||..|+......= ..++.+.. .....-|.|+.|.+
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~-A~T~~GWSC~~Cen 75 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEM-AHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCC-CSSSSSCCCTTTCC
T ss_pred cCCCCCcccCccccccccceeccc-cccccccHhhcccccccccHHHHHHHHc-cCCCCCccccccch
Confidence 4566789999999 567899999 899999999986422100 00111111 11356899999874
No 67
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.41 E-value=0.0017 Score=55.66 Aligned_cols=45 Identities=20% Similarity=0.541 Sum_probs=34.6
Q ss_pred CccccccCCC---CceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 216 FAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 216 d~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
..+| +|+.+ +.+|.|+ .|..+||..| +|++..++ .+.|+|+.|..
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~C----------vgi~~~~~--~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECN-ECHTWIHLSC----------AKIRKSNV--PEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECT-TTCCEEETTT----------TTCCTTSC--CSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECC-CCCccccccc----------cCcCcccC--CCcEECCCCCC
Confidence 4567 88764 3599999 5999999996 67765543 47999999974
No 68
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.29 E-value=0.0015 Score=55.70 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=34.9
Q ss_pred cccccCcCCccccccccceeeccccccccccccCCCCcccccccchhhhhhhhccCCCCceeEEccCCccc
Q 002824 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKII 413 (876)
Q Consensus 343 H~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~f~~~~~e~~~raW~~ll~~~riLI~C~kH~i~ 413 (876)
-.|.+|+.++ .|+.|..|+++||..||.+++.- .| ..-|+|+.|..+
T Consensus 13 ~~C~vC~~~~-------~ll~Cd~C~~~~H~~Cl~P~l~~---------------~P--~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDGT-------DVLRCTHCAAAFHWRCHFPAGTS---------------RP--GTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCCT-------TCEECSSSCCEECHHHHCTTTCC---------------CC--SSSCCCTTTTTC
T ss_pred CCcCCCCCCC-------eEEECCCCCCceecccCCCccCc---------------CC--CCCEECccccCC
Confidence 4688997643 58999999999999999887642 12 224788888644
No 69
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.26 E-value=0.0023 Score=53.55 Aligned_cols=31 Identities=35% Similarity=0.921 Sum_probs=26.2
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
+|.+|+..+ .|+.|..|+++||..|+.+++.
T Consensus 11 ~C~vC~~~g-------~ll~Cd~C~~~fH~~Cl~ppl~ 41 (61)
T 1mm2_A 11 FCRVCKDGG-------ELLCCDTCPSSYHIHCLNPPLP 41 (61)
T ss_dssp SCTTTCCCS-------SCBCCSSSCCCBCSSSSSSCCS
T ss_pred cCCCCCCCC-------CEEEcCCCCHHHcccccCCCcC
Confidence 588888643 6999999999999999988664
No 70
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.17 E-value=0.00093 Score=57.89 Aligned_cols=48 Identities=23% Similarity=0.512 Sum_probs=34.9
Q ss_pred CccccccCCC----CceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 216 FAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 216 d~VCaICe~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
+.+--+|+.+ +.+|.|| .|..+||..| +|++..+.+....|+|+.|..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd-~C~~WfH~~C----------vg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECD-ACKDWFHGSC----------VGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCEETTTTEECCTTSCEEECT-TTCCEEEHHH----------HTCCTTTGGGBSSCCCHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcC-CCCCCEeccc----------ccccccccCCCCEEECCCCcc
Confidence 3344478653 4699999 5999999996 577665443347899999974
No 71
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=96.11 E-value=0.0042 Score=74.85 Aligned_cols=129 Identities=15% Similarity=0.227 Sum_probs=77.4
Q ss_pred cccccCcccchhhhHHHHHHhhccc----cccCCeEEeeccCcchhhHHHHHHHHHc------CCcccccCC--------
Q 002824 674 RYTSFGRHFTKVEKLKEIVDRLHWY----VRSGDTIVDFCCGANDFSCMMKVKLEQM------GKSCSFRNY-------- 735 (876)
Q Consensus 674 ry~s~grhft~~ekl~~i~~~l~~~----~~~~d~~vd~~cg~~~f~~l~~~~~~~~------~~~~~~kn~-------- 735 (876)
.....|.+||+.+-..-+++-.++. ..+|.+|+|+|||+..|.-.+.+++.+. |-+.+-..+
T Consensus 290 ~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlN 369 (878)
T 3s1s_A 290 GRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLG 369 (878)
T ss_dssp SCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHH
T ss_pred hCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHH
Confidence 4567899999999777777663333 3468999999999999998877665311 212111111
Q ss_pred ----CCCCCCCCCccccccccccCCCCCCCCCceeeecCCCcchhh----------------------------hhHHHH
Q 002824 736 ----DLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKA----------------------------SLANKF 783 (876)
Q Consensus 736 ----d~~~~~~~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~----------------------------~~a~kf 783 (876)
.+...-+..++...|++...+... .+=-+|+| ||||+... .+...|
T Consensus 370 L~lN~LlhGi~~~~I~~dD~L~~~~~~~-~kFDVVIg-NPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aF 447 (878)
T 3s1s_A 370 LLFPQLVSSNNAPTITGEDVCSLNPEDF-ANVSVVVM-NPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALF 447 (878)
T ss_dssp TTSTTTCBTTBCCEEECCCGGGCCGGGG-TTEEEEEE-CCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHH
T ss_pred HHHhhhhcCCCcceEEecchhccccccc-CCCCEEEE-CCCccccccchhhhhhHHHHhhhhccccccccccccchHHHH
Confidence 111111112444555555332211 23347888 99996511 134458
Q ss_pred HHhhhhc-CC-cEEEEecCcccc
Q 002824 784 ISQALKF-KP-KLIVLIVPQETR 804 (876)
Q Consensus 784 i~~~~~f-~p-~~~~li~p~~~~ 804 (876)
+.+|+.. +| =.+++|+|...-
T Consensus 448 Ie~Al~lLKpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 448 LELVTELVQDGTVISAIMPKQYL 470 (878)
T ss_dssp HHHHHHHSCTTCEEEEEEETHHH
T ss_pred HHHHHHhcCCCcEEEEEEChHHh
Confidence 8888865 33 378889998765
No 72
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.09 E-value=0.0031 Score=56.44 Aligned_cols=37 Identities=32% Similarity=0.723 Sum_probs=29.9
Q ss_pred cccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 343 H~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
-+|.+|+..... ....|+.|..|+.+||..|+.+++.
T Consensus 17 ~~C~vC~~~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (88)
T 1wev_A 17 LACVVCRQMTVA--SGNQLVECQECHNLYHQDCHKPQVT 53 (88)
T ss_dssp CSCSSSCCCCCC--TTCCEEECSSSCCEEETTTSSSCCC
T ss_pred CcCCCCCCCCCC--CCCceEECCCCCCeEcCccCCCccc
Confidence 369999987531 2358999999999999999988764
No 73
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.06 E-value=0.005 Score=63.86 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=93.2
Q ss_pred cccCcccch-hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC---------CCCCCc
Q 002824 676 TSFGRHFTK-VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ---------PKNDFS 745 (876)
Q Consensus 676 ~s~grhft~-~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~---------~~~~~~ 745 (876)
.+||.||-. ..-+..|++.+. +.+|++|+|+.||...+...+-++ | .+..--.|+-+ +..++.
T Consensus 7 k~~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~----~-~~~v~avEid~~~~~~~~~~~~~~v~ 79 (249)
T 3ftd_A 7 KSFGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH----P-LKKLYVIELDREMVENLKSIGDERLE 79 (249)
T ss_dssp -CCCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS----C-CSEEEEECCCHHHHHHHTTSCCTTEE
T ss_pred CcccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHhccCCCeE
Confidence 589998865 557778888875 458999999999999988877554 1 01111111110 123566
Q ss_pred cccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhcC--CcEEEEecCccc-ccccc--ccc-cce-----
Q 002824 746 FEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFK--PKLIVLIVPQET-RRLDQ--KAS-YNL----- 814 (876)
Q Consensus 746 f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~--p~~~~li~p~~~-~~~~~--~~~-y~l----- 814 (876)
|...|-+.+...++.. ...|+| ||||.+ +...+.+.|+.. ..-.+++++.|+ +|+-. ..+ ..+
T Consensus 80 ~i~~D~~~~~~~~~~~-~~~vv~-NlPy~i----~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~a~k~yg~lsv~~q~~ 153 (249)
T 3ftd_A 80 VINEDASKFPFCSLGK-ELKVVG-NLPYNV----ASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGKKDTGWLSVFVRTF 153 (249)
T ss_dssp EECSCTTTCCGGGSCS-SEEEEE-ECCTTT----HHHHHHHHHHTGGGCSEEEEEEEHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred EEEcchhhCChhHccC-CcEEEE-ECchhc----cHHHHHHHHhcCCCCceEEEEEeHHHHHHhhccccccHHHHHHHhH
Confidence 7777777777666544 446777 999985 445555555543 356788888887 56532 222 222
Q ss_pred -eecccccccCcccccCCcccc
Q 002824 815 -IWEDNEVLSGKSFYLPGSLDV 835 (876)
Q Consensus 815 -~~~d~~~l~g~~fy~pg~~d~ 835 (876)
-.+--..++..+|+=|..||.
T Consensus 154 ~~~~~~~~v~~~~F~P~PkV~s 175 (249)
T 3ftd_A 154 YDVNYVMTVPPRFFVPPPKVQS 175 (249)
T ss_dssp EEEEEEEEECGGGEESCCSSCE
T ss_pred EEEEEEEEEChHHccCCCCCeE
Confidence 223334588899997777773
No 74
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=96.04 E-value=0.0028 Score=63.01 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=35.3
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcccccccchhhhhhhhccCCCCceeEEccCCccc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKII 413 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~f~~~~~e~~~raW~~ll~~~riLI~C~kH~i~ 413 (876)
+|.+|+.++ .|+.|..||.+||..|+.+++.. .| ..-|+|+.|...
T Consensus 6 ~C~~C~~~g-------~ll~Cd~C~~~~H~~C~~p~l~~---------------~p--~~~W~C~~C~~~ 51 (184)
T 3o36_A 6 WCAVCQNGG-------ELLCCEKCPKVFHLSCHVPTLTN---------------FP--SGEWICTFCRDL 51 (184)
T ss_dssp SCTTTCCCS-------SCEECSSSSCEECTTTSSSCCSS---------------CC--SSCCCCTTTSCS
T ss_pred ccccCCCCC-------eeeecCCCCcccCccccCCCCCC---------------CC--CCCEECccccCc
Confidence 689998754 49999999999999999887642 12 234789988754
No 75
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.02 E-value=0.004 Score=52.25 Aligned_cols=37 Identities=27% Similarity=0.715 Sum_probs=29.9
Q ss_pred cccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 343 H~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
..|.+|+.+.. ..+..|+.|..|+.+||..|+.+++.
T Consensus 7 ~~C~vC~~~~~--~~~~~ll~Cd~C~~~~H~~C~~p~l~ 43 (66)
T 2yt5_A 7 GVCTICQEEYS--EAPNEMVICDKCGQGYHQLCHTPHID 43 (66)
T ss_dssp CCBSSSCCCCC--BTTBCEEECSSSCCEEETTTSSSCCC
T ss_pred CCCCCCCCCCC--CCCCCEEECCCCChHHHhhhCCCccc
Confidence 47999998643 13458999999999999999988664
No 76
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.98 E-value=0.0036 Score=51.31 Aligned_cols=31 Identities=39% Similarity=0.943 Sum_probs=26.7
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
.|.+|+..+ .|+.|..|+.+||..|+.+++.
T Consensus 11 ~C~vC~~~g-------~ll~Cd~C~~~~H~~Cl~ppl~ 41 (56)
T 2yql_A 11 FCSVCRKSG-------QLLMCDTCSRVYHLDCLDPPLK 41 (56)
T ss_dssp SCSSSCCSS-------CCEECSSSSCEECSSSSSSCCC
T ss_pred CCccCCCCC-------eEEEcCCCCcceECccCCCCcC
Confidence 588888753 6999999999999999998764
No 77
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.93 E-value=0.0036 Score=56.50 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=37.5
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcccccccchhhhhhhhccCCCCceeEEccCCccc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKII 413 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~f~~~~~e~~~raW~~ll~~~riLI~C~kH~i~ 413 (876)
.|.+|+..++ ...|+.|+.|+++||..||.+++.- .| ..-|+|+.|...
T Consensus 18 ~C~vC~~~~~----~~~ll~CD~C~~~~H~~Cl~Ppl~~---------------~P--~g~W~C~~C~~~ 66 (92)
T 2e6r_A 18 ICQVCSRGDE----DDKLLFCDGCDDNYHIFCLLPPLPE---------------IP--RGIWRCPKCILA 66 (92)
T ss_dssp CCSSSCCSGG----GGGCEECTTTCCEECSSSSSSCCSS---------------CC--SSCCCCHHHHHH
T ss_pred CCccCCCcCC----CCCEEEcCCCCchhccccCCCCccc---------------CC--CCCcCCccCcCc
Confidence 6999999764 3489999999999999999887642 12 224778888654
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=95.89 E-value=0.0029 Score=64.17 Aligned_cols=47 Identities=30% Similarity=0.606 Sum_probs=35.8
Q ss_pred cccccCcCCccccccccceeeccccccccccccCCCCcccccccchhhhhhhhccCCCCceeEEccCCccc
Q 002824 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKII 413 (876)
Q Consensus 343 H~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~f~~~~~e~~~raW~~ll~~~riLI~C~kH~i~ 413 (876)
-+|.+|+.++ .|+.|..||.+||..|+.+++.- .| ..-|+|+.|...
T Consensus 8 ~~C~~C~~~g-------~ll~Cd~C~~~~H~~Cl~p~l~~---------------~p--~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNGG-------DLLCCEKCPKVFHLTCHVPTLLS---------------FP--SGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCCE-------EEEECSSSSCEECTTTSSSCCSS---------------CC--SSCCCCTTTSCS
T ss_pred CCCCCCCCCC-------ceEEcCCCCCccCCccCCCCCCC---------------CC--CCCEEeCceeCc
Confidence 3689998765 49999999999999999887642 12 234889988754
No 79
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=95.89 E-value=0.0039 Score=52.78 Aligned_cols=31 Identities=35% Similarity=0.989 Sum_probs=26.7
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
.|.+|+.++ .|+.|..|+.+||..|+.+++.
T Consensus 10 ~C~vC~~~g-------~ll~CD~C~~~fH~~Cl~ppl~ 40 (66)
T 1xwh_A 10 ECAVCRDGG-------ELICCDGCPRAFHLACLSPPLR 40 (66)
T ss_dssp SBSSSSCCS-------SCEECSSCCCEECTTTSSSCCS
T ss_pred CCccCCCCC-------CEEEcCCCChhhcccccCCCcC
Confidence 688898753 5999999999999999988764
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=95.81 E-value=0.0043 Score=51.48 Aligned_cols=31 Identities=39% Similarity=0.943 Sum_probs=26.7
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
.|.+|+..+ .|+.|..|+.+||..|+.+++.
T Consensus 7 ~C~vC~~~g-------~ll~Cd~C~~~fH~~Cl~ppl~ 37 (60)
T 2puy_A 7 FCSVCRKSG-------QLLMCDTCSRVYHLDCLDPPLK 37 (60)
T ss_dssp SCTTTCCCS-------SCEECSSSSCEECGGGSSSCCS
T ss_pred CCcCCCCCC-------cEEEcCCCCcCEECCcCCCCcC
Confidence 588898753 6999999999999999998764
No 81
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.76 E-value=0.004 Score=50.38 Aligned_cols=40 Identities=23% Similarity=0.587 Sum_probs=31.3
Q ss_pred ccCC---CCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccc
Q 002824 221 ICDD---GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCV 273 (876)
Q Consensus 221 ICe~---gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~ 273 (876)
+|+. ++.+|.|+ .|..+||..| +|++..++ .+.|+|+.|.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~C----------vgi~~~~~--~~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSC----------AKIRKSNV--PEVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTT----------TTCCGGGC--CSSCCCHHHH
T ss_pred EeCCcCCCCCEEEcC-CCCccccccc----------cCCCcccC--CCcEECcCCC
Confidence 5654 45799999 5999999996 67776543 4799999986
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.70 E-value=0.0048 Score=60.07 Aligned_cols=62 Identities=21% Similarity=0.576 Sum_probs=42.2
Q ss_pred Cceecccccc-------------cCcccccccccCCCCCCCCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHH
Q 002824 265 PNFLCQNCVY-------------QEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRER 331 (876)
Q Consensus 265 ~~W~C~eC~~-------------gqHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~kr 331 (876)
..++|..|.. .+..|.+|+. +++++-| ..|.+.||..|+.+.+.+ +.+..-
T Consensus 39 ~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~--------GG~LlcC--D~Cpr~Fh~~Cl~p~l~~------~~l~~i 102 (142)
T 2lbm_A 39 QVLICKNCFKYYMSDDISRDSDGMDEQCRWCAE--------GGNLICC--DFCHNAFCKKCILRNLGR------KELSTI 102 (142)
T ss_dssp TEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCC--------CSSEEEC--SSSCCEEEHHHHHHHTCH------HHHHHH
T ss_pred cccccHHHHHHHhcCCceecCCCCCCeecccCC--------CCcEEeC--CCCCCeeeHhhcCCCCCh------hhhhhc
Confidence 4566777764 2467999984 5689999 699999999999877643 122221
Q ss_pred hhcCCceecCC
Q 002824 332 IAAGESFTCPV 342 (876)
Q Consensus 332 I~~g~~F~CPl 342 (876)
+.....|.||.
T Consensus 103 ~~p~~~W~C~~ 113 (142)
T 2lbm_A 103 MDENNQWYCYI 113 (142)
T ss_dssp HTSTTCCCCTT
T ss_pred ccCCCCCEeec
Confidence 13456787754
No 83
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=95.68 E-value=0.0042 Score=62.57 Aligned_cols=31 Identities=29% Similarity=0.790 Sum_probs=26.9
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
+|.+|+.++ .|+.|..|+++||..|+.+++.
T Consensus 4 ~C~~C~~~g-------~ll~Cd~C~~~~H~~Cl~p~l~ 34 (189)
T 2ro1_A 4 ICRVCQKPG-------DLVMCNQCEFCFHLDCHLPALQ 34 (189)
T ss_dssp CBTTTCCCS-------SCCCCTTTCCBCCSTTSTTCCS
T ss_pred cCccCCCCC-------ceeECCCCCchhccccCCCCcc
Confidence 689999765 4899999999999999988764
No 84
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=95.63 E-value=0.016 Score=60.52 Aligned_cols=148 Identities=18% Similarity=0.301 Sum_probs=91.9
Q ss_pred cccCcccch-hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCC-----------CCCCC
Q 002824 676 TSFGRHFTK-VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLI-----------QPKND 743 (876)
Q Consensus 676 ~s~grhft~-~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~-----------~~~~~ 743 (876)
.+||.||.. +.-+..|++.+. +.+|++|+|+.||...+...+-++. . ..--.|+- ....+
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~----~--~V~avEid~~~~~~~~~~~~~~~~ 76 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC----D--NLALVEIDRDLVAFLQKKYNQQKN 76 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS----S--EEEEEECCHHHHHHHHHHHTTCTT
T ss_pred CcCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC----C--EEEEEECCHHHHHHHHHHHhhCCC
Confidence 589999975 557777888876 4689999999999999988775431 1 11111110 01245
Q ss_pred CccccccccccCCCCCCC-CCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCccc-cccccccc---cc---e-
Q 002824 744 FSFEKRDWMTVRPEELPD-GSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQET-RRLDQKAS---YN---L- 814 (876)
Q Consensus 744 ~~f~~~~w~~~~~~~l~~-g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~~~-~~~~~~~~---y~---l- 814 (876)
+.|...|.+++...++.. +.--|+| ||||.+-..+--++++....+ .-++|++..|+ +|+-.+.+ |- +
T Consensus 77 v~~i~~D~~~~~~~~~~~~~~~~vv~-NlPY~is~~il~~ll~~~~~~--~~~~lm~QkEva~Rl~a~pg~k~yg~lsv~ 153 (255)
T 3tqs_A 77 ITIYQNDALQFDFSSVKTDKPLRVVG-NLPYNISTPLLFHLFSQIHCI--EDMHFMLQKEVVRRITAEVGSHDYGRLSVM 153 (255)
T ss_dssp EEEEESCTTTCCGGGSCCSSCEEEEE-ECCHHHHHHHHHHHHHTGGGE--EEEEEEEEHHHHHHHTCCTTSTTCSHHHHH
T ss_pred cEEEEcchHhCCHHHhccCCCeEEEe-cCCcccCHHHHHHHHhCCCCh--heEEEEEeHHHHHHhhCCCCCCccchhhhe
Confidence 677778888887776653 3445777 999996555444444443322 56888999987 78743322 32 1
Q ss_pred -----eecccccccCcccccCCccc
Q 002824 815 -----IWEDNEVLSGKSFYLPGSLD 834 (876)
Q Consensus 815 -----~~~d~~~l~g~~fy~pg~~d 834 (876)
-.+--..++..+||=|-.||
T Consensus 154 ~q~~~~~~~~~~v~~~~F~P~PkVd 178 (255)
T 3tqs_A 154 AQYFCDNTYLFTVSPQAFTPPPRVE 178 (255)
T ss_dssp HHHHEEEEEEEEECGGGEESCCSSC
T ss_pred eeeeEEEEEEEEEChHHccCCCCCe
Confidence 22333457888999777776
No 85
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.63 E-value=0.025 Score=59.72 Aligned_cols=162 Identities=17% Similarity=0.288 Sum_probs=105.9
Q ss_pred CChhhhhhHHHhhhccccccccccccccc-cccCcccc-hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHH
Q 002824 647 CPPEILCQIFQWKRKLDVYLAPFLHGMRY-TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLE 724 (876)
Q Consensus 647 c~p~~l~q~~~~~~kl~~~l~p~l~g~ry-~s~grhft-~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~ 724 (876)
-.|..+++|++- ||.|- .+||.||- .+.-+..|++.+. +.+| +|+|+-||...+...+-++.
T Consensus 5 ~~~~~~~~~~~~------------~~~~~~k~~GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~- 68 (271)
T 3fut_A 5 ASPQSVRALLER------------HGLFADKRFGQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG- 68 (271)
T ss_dssp CCHHHHHHHHHH------------TTCCCSTTSSCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT-
T ss_pred cCHHHHHHHHHh------------cCCCccccCCccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC-
Confidence 367777777665 34443 48999996 5567788888886 4678 99999999999998887652
Q ss_pred HcCCcccccCCCCCC----------CCCCCccccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhcCCcE
Q 002824 725 QMGKSCSFRNYDLIQ----------PKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKL 794 (876)
Q Consensus 725 ~~~~~~~~kn~d~~~----------~~~~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~ 794 (876)
. ..--.|+-+ +..++.+...|.+.+...++.. ...|+| ||||.+-..+-.+++.. -...-
T Consensus 69 ---~--~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~-~~~iv~-NlPy~iss~il~~ll~~---~~~~~ 138 (271)
T 3fut_A 69 ---A--EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQ-GSLLVA-NLPYHIATPLVTRLLKT---GRFAR 138 (271)
T ss_dssp ---C--CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCT-TEEEEE-EECSSCCHHHHHHHHHH---CCEEE
T ss_pred ---C--EEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccC-ccEEEe-cCcccccHHHHHHHhcC---CCCCE
Confidence 1 111111110 0245677778888877665543 346888 99999666555555554 12256
Q ss_pred EEEecCccc-cccccccc---cc---------eeecccccccCcccccCCccc
Q 002824 795 IVLIVPQET-RRLDQKAS---YN---------LIWEDNEVLSGKSFYLPGSLD 834 (876)
Q Consensus 795 ~~li~p~~~-~~~~~~~~---y~---------l~~~d~~~l~g~~fy~pg~~d 834 (876)
.+|++..|+ +|+-.+.+ |- .-.+--..++..+|+=|-.||
T Consensus 139 ~~lm~QkEva~Rl~A~pg~k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVd 191 (271)
T 3fut_A 139 LVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVW 191 (271)
T ss_dssp EEEEEEHHHHHHHTCCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSC
T ss_pred EEEEeeeeeeeecccCCCCCcccHHHHHHHHHeeEEEEEEEChHHeECCCCCc
Confidence 788888888 67743322 32 223344557888999777777
No 86
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.57 E-value=0.0024 Score=64.46 Aligned_cols=48 Identities=21% Similarity=0.579 Sum_probs=33.9
Q ss_pred ccccccCCC---C----ceeecCcccccccccccccCccccccccCCcccccC------CCCceeccccccc
Q 002824 217 AVCAICDDG---G----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQID------AVPNFLCQNCVYQ 275 (876)
Q Consensus 217 ~VCaICe~g---G----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~------~~~~W~C~eC~~g 275 (876)
.+|.+|+.+ + .+|.|| .|.++||..| .|++.+..+ ....|+|+.|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~C----------vgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKC----------ENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGG----------SSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchhc----------cccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 568888753 3 399999 5999999996 566653211 1237999999853
No 87
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.24 E-value=0.0052 Score=51.35 Aligned_cols=31 Identities=42% Similarity=1.047 Sum_probs=26.4
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCcc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi~ 381 (876)
+|.+|+..+ .|+.|..|+++||..|+.+++.
T Consensus 13 ~C~vC~~~g-------~ll~CD~C~~~fH~~Cl~p~l~ 43 (61)
T 2l5u_A 13 YCEVCQQGG-------EIILCDTCPRAYHMVCLDPDME 43 (61)
T ss_dssp SCTTTSCCS-------SEEECSSSSCEEEHHHHCTTCC
T ss_pred CCccCCCCC-------cEEECCCCChhhhhhccCCCCC
Confidence 688898743 6999999999999999988653
No 88
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.19 E-value=0.003 Score=72.13 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=35.8
Q ss_pred CccccccCC----CCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc
Q 002824 216 FAVCAICDD----GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 216 d~VCaICe~----gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g 275 (876)
..+| +|+. +|.+|.|| .|..+||..| +|++..+....+.|+|+.|...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd-~C~~WfH~~C----------vgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECD-ICKDWFHGSC----------VGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBT-TTCCEEEHHH----------HTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEcc-CCCCceeeee----------cCcCcccccCCCEEECCCCcCC
Confidence 3445 8875 46699999 5999999996 5777654333478999999853
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=94.54 E-value=0.011 Score=51.00 Aligned_cols=34 Identities=24% Similarity=0.602 Sum_probs=27.7
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~g 379 (876)
.|.+|+.++. ..+..|+.|+.|+.+||..|+.+.
T Consensus 18 ~C~vC~~~~s--~~~~~ll~CD~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 18 VCSICMDGES--QNSNVILFCDMCNLAVHQECYGVP 51 (71)
T ss_dssp SCSSSCCCCC--CSSSCEEECSSSCCEEEHHHHTCS
T ss_pred CCCCCCCCCC--CCCCCEEECCCCCCccccccCCCC
Confidence 6899998752 134589999999999999999764
No 90
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.47 E-value=0.012 Score=50.52 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=26.5
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCCCc
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEI 380 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~gi 380 (876)
+|.+|+...+ +..|+.|+.|+.+||..|+....
T Consensus 20 ~C~~C~~~~~----~~~mi~CD~C~~wfH~~Cv~~~~ 52 (75)
T 2k16_A 20 ICPGCNKPDD----GSPMIGCDDCDDWYHWPCVGIMA 52 (75)
T ss_dssp CBTTTTBCCS----SCCEEECSSSSSEEEHHHHTCSS
T ss_pred CCCCCCCCCC----CCCEEEcCCCCcccccccCCCCc
Confidence 5778988653 34799999999999999996543
No 91
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.22 E-value=0.0089 Score=59.20 Aligned_cols=57 Identities=25% Similarity=0.506 Sum_probs=40.0
Q ss_pred ccCCCCccccccCCCCceeecCc-ccccccccccccCccccccccCCcc-cccCCCCceeccccc
Q 002824 211 KDENYFAVCAICDDGGDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQ-AQIDAVPNFLCQNCV 273 (876)
Q Consensus 211 edd~~d~VCaICe~gGeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlT~-~ev~~~~~W~C~eC~ 273 (876)
+++..+.+|.+|.+||+|++|+. .|.|+|-..|+.- -+|... .++.+...|.|--|.
T Consensus 74 DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~------nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDL------LVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHH------HTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHH------hcCHhHHHHHhccCCCEEEecC
Confidence 45567899999999999999984 6999999998642 133311 222346788655444
No 92
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=94.19 E-value=0.046 Score=57.83 Aligned_cols=101 Identities=16% Similarity=0.282 Sum_probs=56.4
Q ss_pred cccCcccc-hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------C
Q 002824 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------K 741 (876)
Q Consensus 676 ~s~grhft-~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~ 741 (876)
.+||+||. .++-+..|++.+. +.+|++|+|+.||...++..|-++ +. ..--.|+-+. -
T Consensus 18 k~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~----~~--~v~~vDi~~~~~~~a~~~~~~~~~ 89 (299)
T 2h1r_A 18 YFQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL----AK--KVITIDIDSRMISEVKKRCLYEGY 89 (299)
T ss_dssp -----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT----SS--EEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc----CC--EEEEEECCHHHHHHHHHHHHHcCC
Confidence 48999995 7778888888875 478999999999999999877543 21 1222222110 0
Q ss_pred CCCccccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhcCCc
Q 002824 742 NDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPK 793 (876)
Q Consensus 742 ~~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~ 793 (876)
+++.|...|.+.+... .- .+|++ ||||..-. ..+.+.|+..+.
T Consensus 90 ~~v~~~~~D~~~~~~~---~~-D~Vv~-n~py~~~~----~~~~~ll~~~~~ 132 (299)
T 2h1r_A 90 NNLEVYEGDAIKTVFP---KF-DVCTA-NIPYKISS----PLIFKLISHRPL 132 (299)
T ss_dssp CCEEC----CCSSCCC---CC-SEEEE-ECCGGGHH----HHHHHHHHCSSC
T ss_pred CceEEEECchhhCCcc---cC-CEEEE-cCCccccc----HHHHHHHhcCCc
Confidence 2355556666554332 22 26666 99998544 444455554443
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=94.06 E-value=0.015 Score=52.05 Aligned_cols=35 Identities=23% Similarity=0.578 Sum_probs=28.4
Q ss_pred cccccCcCCccccccccceeeccccccccccccCCCC
Q 002824 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (876)
Q Consensus 343 H~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~g 379 (876)
-.|.+|+.++. ..+..|+.|..|+.+||..|+.++
T Consensus 26 ~~C~vC~~~~s--~~~~~ll~CD~C~~~fH~~Cl~p~ 60 (88)
T 2l43_A 26 AVCSICMDGES--QNSNVILFCDMCNLAVHQECYGVP 60 (88)
T ss_dssp CCCSSCCSSSS--CSEEEEEECSSSCCCCCHHHHTCS
T ss_pred CcCCcCCCCCC--CCCCCEEECCCCCchhhcccCCCC
Confidence 47899998752 124589999999999999999765
No 94
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=94.03 E-value=0.072 Score=51.65 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=70.7
Q ss_pred ccCcccchhhhHHHHHHhhccc-cccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC----------CC--C
Q 002824 677 SFGRHFTKVEKLKEIVDRLHWY-VRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP----------KN--D 743 (876)
Q Consensus 677 s~grhft~~ekl~~i~~~l~~~-~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~----------~~--~ 743 (876)
.+|.++|..+-...++..+... ..+|++|+|++||...|+..+.++ |. ...--.|+-+. .+ .
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~ 98 (207)
T 1wy7_A 24 WLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL----GA-KEVICVEVDKEAVDVLIENLGEFKGK 98 (207)
T ss_dssp GGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred ceeeecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc----CC-CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 4566777777666666555433 457899999999999999888654 21 11222222110 00 3
Q ss_pred CccccccccccCCCCCCCCCceeeecCCCcchhh-hhHHHHHHhhhhcCCcEEEEec--Cccccc
Q 002824 744 FSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKA-SLANKFISQALKFKPKLIVLIV--PQETRR 805 (876)
Q Consensus 744 ~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~-~~a~kfi~~~~~f~p~~~~li~--p~~~~~ 805 (876)
..|...|+.++ |..=-+|+. ||||+... ....+|++.++... ..+.++. ++++..
T Consensus 99 ~~~~~~d~~~~-----~~~~D~v~~-~~p~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~ 156 (207)
T 1wy7_A 99 FKVFIGDVSEF-----NSRVDIVIM-NPPFGSQRKHADRPFLLKAFEIS-DVVYSIHLAKPEVRR 156 (207)
T ss_dssp EEEEESCGGGC-----CCCCSEEEE-CCCCSSSSTTTTHHHHHHHHHHC-SEEEEEEECCHHHHH
T ss_pred EEEEECchHHc-----CCCCCEEEE-cCCCccccCCchHHHHHHHHHhc-CcEEEEEeCCcCCHH
Confidence 45556666554 322235664 99998765 45567888888876 4444444 555543
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=93.99 E-value=0.033 Score=50.69 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=22.5
Q ss_pred cCcCCccccccccceeeccccccccccccCCCC
Q 002824 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (876)
Q Consensus 347 ~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~g 379 (876)
.|+...+ ++.|+.|..|+.+||..|+.+.
T Consensus 32 iC~~~~~----~~~mi~Cd~C~~w~H~~C~~~~ 60 (98)
T 2lv9_A 32 ICGFTHD----DGYMICCDKCSVWQHIDCMGID 60 (98)
T ss_dssp TTSCCSC----SSCEEEBTTTCBEEETTTTTCC
T ss_pred ECCCccC----CCcEEEcCCCCCcCcCcCCCCC
Confidence 4655443 2479999999999999999664
No 96
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=93.64 E-value=0.19 Score=53.81 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=82.8
Q ss_pred ChhhhhhHHHhhhcccccccc---ccccccccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHH
Q 002824 648 PPEILCQIFQWKRKLDVYLAP---FLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLE 724 (876)
Q Consensus 648 ~p~~l~q~~~~~~kl~~~l~p---~l~g~ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~ 724 (876)
+|++.-.+...++..-++|-- -||..-|..+|..-.+..-...++..+.| .+|++|+|++||+..|...+-.+.
T Consensus 149 ~pd~~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~~~--~~~~~vLD~gcGsG~~~ie~a~~~- 225 (354)
T 3tma_A 149 RPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADA--RPGMRVLDPFTGSGTIALEAASTL- 225 (354)
T ss_dssp SCSEEEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHTTC--CTTCCEEESSCTTSHHHHHHHHHH-
T ss_pred CCCEEEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHhCC--CCCCEEEeCCCCcCHHHHHHHHhh-
Confidence 677766666556655555431 23333333333333444445566777766 688999999999999998877664
Q ss_pred HcCCcccccCCCCCCC-------------CCCCccccccccccCCCCCCCCC-ceeeecCCCcchhhh-------hHHHH
Q 002824 725 QMGKSCSFRNYDLIQP-------------KNDFSFEKRDWMTVRPEELPDGS-QLIMGLNPPFGVKAS-------LANKF 783 (876)
Q Consensus 725 ~~~~~~~~kn~d~~~~-------------~~~~~f~~~~w~~~~~~~l~~g~-~li~glnppfg~~~~-------~a~kf 783 (876)
+....+--+|+-+. -....|...|..++.+. .+. -+|+ .|||||.+.. +-..|
T Consensus 226 --~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~---~~~~D~Ii-~npPyg~r~~~~~~~~~~~~~~ 299 (354)
T 3tma_A 226 --GPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF---FPEVDRIL-ANPPHGLRLGRKEGLFHLYWDF 299 (354)
T ss_dssp --CTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT---CCCCSEEE-ECCCSCC----CHHHHHHHHHH
T ss_pred --CCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc---cCCCCEEE-ECCCCcCccCCcccHHHHHHHH
Confidence 12223333333220 01567777777766432 222 3555 4999997543 22567
Q ss_pred HHhhhhc-CCc-EEEEecCcc
Q 002824 784 ISQALKF-KPK-LIVLIVPQE 802 (876)
Q Consensus 784 i~~~~~f-~p~-~~~li~p~~ 802 (876)
++.+... +|. .+++++|..
T Consensus 300 ~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 300 LRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp HHHHHHTSCTTCEEEEEESCH
T ss_pred HHHHHHhcCCCcEEEEEeCCH
Confidence 7766644 463 555566654
No 97
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=92.78 E-value=0.033 Score=64.09 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=30.7
Q ss_pred ceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 227 DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 227 eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
.+|+|| .|..+||..| +|++..+....+.|+|+.|..
T Consensus 57 ~mI~CD-~C~~WfH~~C----------Vgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 57 QWIGCD-SCQTWYHFLC----------SGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp SEEECT-TTCCEEEGGG----------TTCCGGGTTTEEECCCTTTHH
T ss_pred CEEECC-CCCcCCCCcC----------CCCChhHhcCCCeEECcCCcC
Confidence 599999 5999999996 688876654468999999985
No 98
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=92.56 E-value=0.016 Score=65.59 Aligned_cols=47 Identities=23% Similarity=0.526 Sum_probs=35.8
Q ss_pred ccccccCC----CCceeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 217 AVCAICDD----GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 217 ~VCaICe~----gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
.+..+|+. +|.+|.|| .|..+||..| +|++..+....+.|+|+.|..
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD-~C~~WfH~~C----------Vgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECD-MCQDWFHGSC----------VGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp CEETTTTEECCTTSCEEECT-TTCCEEEHHH----------HTCCHHHHTTEEECCCHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcC-CCCccccccc----------CCcCcccccCCCEEECCCCcc
Confidence 34447765 46799999 6999999996 678766543447899999975
No 99
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=92.36 E-value=0.043 Score=50.59 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=44.4
Q ss_pred ccccccCCCCceeecCcccccccccccccCccccccccCCcccccCCCCceeccccccc--CcccccccccCCCCCCCCC
Q 002824 217 AVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ--EHQCFACGMLGSSDKSSSQ 294 (876)
Q Consensus 217 ~VCaICe~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~g--qHqCfiCgklGssd~ss~~ 294 (876)
.+|..|.+.. |+ .|...+|..|+.|..-.|..-.. .. -....++.|... -..|..|..... ...
T Consensus 8 ~~C~~C~~~~----C~-~C~~c~~~~~~~~~~~~~~~c~~--~~---~~~~~~~~~~~c~~c~~c~~c~~~~~----~~~ 73 (117)
T 4bbq_A 8 RKCKACVQGE----CG-VCHYCRDMKKFGGPGRMKQSCVL--RQ---CLAPRLPHSVTCSLCGEVDQNEETQD----FEK 73 (117)
T ss_dssp SCSHHHHSCC----CS-CSHHHHHSGGGTSCCCSCCCCGG--GC---CSSCBCCTTCBCTTTCCBCCHHHHCC----GGG
T ss_pred CcCcCcCCcC----CC-CCCCCcCCcccCCCCccccchhh--ee---eccccccccccccccCcccccccccc----cCc
Confidence 4566676653 87 79999999986554322210000 00 001111111100 012333332221 234
Q ss_pred ceeccCCCccCCCCccccccccC
Q 002824 295 EVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 295 eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
.++.| ..|...||..|+....
T Consensus 74 ~m~~C--~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 74 KLMEC--CICNEIVHPGCLQMDG 94 (117)
T ss_dssp SCEEE--TTTCCEECGGGCCSCC
T ss_pred ceEEe--eecCCeEECCCCCCCc
Confidence 58899 8999999999998654
No 100
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=92.23 E-value=0.26 Score=54.20 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=85.1
Q ss_pred cccccccccccccc-ccccCccc-chhhhHHHHHHhhcccccc------CCeEEeeccCcchhhHHHHHH----------
Q 002824 661 KLDVYLAPFLHGMR-YTSFGRHF-TKVEKLKEIVDRLHWYVRS------GDTIVDFCCGANDFSCMMKVK---------- 722 (876)
Q Consensus 661 kl~~~l~p~l~g~r-y~s~grhf-t~~ekl~~i~~~l~~~~~~------~d~~vd~~cg~~~f~~l~~~~---------- 722 (876)
.--|.|.+|.+-.+ ..+||.|| +.+.-+..||+.+. +.+ ||+||+.-.|-..+++.+-++
T Consensus 12 ~~~~~~~~~~~~~~~kk~lGQnFL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE 89 (353)
T 1i4w_A 12 ASSVPIPGIKDISKLKFFYGFKYLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLE 89 (353)
T ss_dssp ----CCCCCCTTCSSCCGGGCCCBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEEC
T ss_pred cccCcccchhhccCCCCCCCcCccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEe
Confidence 34566777777644 35899999 55668899999987 453 699999999999999988865
Q ss_pred --------HHHcCCcccccCCCCCCCCCCCcccccccccc-CCCCCCC----------CCceeeecCCCcchhhhhHHHH
Q 002824 723 --------LEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTV-RPEELPD----------GSQLIMGLNPPFGVKASLANKF 783 (876)
Q Consensus 723 --------~~~~~~~~~~kn~d~~~~~~~~~f~~~~w~~~-~~~~l~~----------g~~li~glnppfg~~~~~a~kf 783 (876)
|.+.- .+.|+.||. .+-+.|. +|..+ ....||. +.-+|+| |-||.+-..+--++
T Consensus 90 ~D~~l~~~L~~~~---~~~~l~ii~-~D~l~~~--~~~~l~~~~~l~~~~~~~~~~~~~~~~vva-NLPYnIstpil~~l 162 (353)
T 1i4w_A 90 KRSSLYKFLNAKF---EGSPLQILK-RDPYDWS--TYSNLIDEERIFVPEVQSSDHINDKFLTVA-NVTGEGSEGLIMQW 162 (353)
T ss_dssp CCHHHHHHHHHHT---TTSSCEEEC-SCTTCHH--HHHHHTTTTCSSCCCCCCTTSEEEEEEEEE-ECCSTTHHHHHHHH
T ss_pred cCHHHHHHHHHhc---cCCCEEEEE-CCccchh--hHHHhhcccccccccccccccCCCceEEEE-ECCCchHHHHHHHH
Confidence 43432 357888886 4444443 22221 1122331 1237888 99998766666666
Q ss_pred HHhhh------h-cCCcEEEEecCcccccccc
Q 002824 784 ISQAL------K-FKPKLIVLIVPQETRRLDQ 808 (876)
Q Consensus 784 i~~~~------~-f~p~~~~li~p~~~~~~~~ 808 (876)
+.... . ...++++.+-....+||-.
T Consensus 163 l~~~~~~~~l~~~~~~~m~lmvQkEvA~Rl~A 194 (353)
T 1i4w_A 163 LSCIGNKNWLYRFGKVKMLLWMPSTTARKLLA 194 (353)
T ss_dssp HHHHHHTCGGGGGSEEEEEEEEEHHHHHHHHC
T ss_pred HHhccccccccccCcceEEEEeEHHHHHHhcC
Confidence 65422 0 1134444444444566643
No 101
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=91.98 E-value=0.15 Score=55.36 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=58.8
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------CCCCcccccccc
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------KNDFSFEKRDWM 752 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~~~~~f~~~~w~ 752 (876)
-...++... ..+|++|+|++||+..|...+-.. +..+..--+|+-+. .+...|...|..
T Consensus 206 la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~----~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~ 278 (373)
T 3tm4_A 206 IANAMIELA---ELDGGSVLDPMCGSGTILIELALR----RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT 278 (373)
T ss_dssp HHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHT----TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred HHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 334445444 578999999999999998887654 33223333343321 135677777777
Q ss_pred ccCCCCCCCCCceeeecCCCcchhh-------hhHHHHHHhhhh-cCCcEEEEecC
Q 002824 753 TVRPEELPDGSQLIMGLNPPFGVKA-------SLANKFISQALK-FKPKLIVLIVP 800 (876)
Q Consensus 753 ~~~~~~l~~g~~li~glnppfg~~~-------~~a~kfi~~~~~-f~p~~~~li~p 800 (876)
.+.. +.++.=++-.|||||.+. .+-.+|++.+.. +.+. +++|++
T Consensus 279 ~~~~---~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~-~~~i~~ 330 (373)
T 3tm4_A 279 QLSQ---YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKR-GVFITT 330 (373)
T ss_dssp GGGG---TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEE-EEEEES
T ss_pred hCCc---ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCe-EEEEEC
Confidence 6542 334443344499999764 223556666654 4444 445554
No 102
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=91.54 E-value=0.15 Score=53.37 Aligned_cols=144 Identities=17% Similarity=0.249 Sum_probs=80.2
Q ss_pred cccCcccc-hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------C
Q 002824 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------P 740 (876)
Q Consensus 676 ~s~grhft-~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~ 740 (876)
.+||.||. .+.-+..|++.+.. .+|++|+|+.||...+...+-++ +. ..--.|+-+ .
T Consensus 4 k~~gq~fl~d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~~----~~--~v~~vD~~~~~~~~a~~~~~~~~~ 75 (285)
T 1zq9_A 4 TGIGQHILKNPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLEK----AK--KVVACELDPRLVAELHKRVQGTPV 75 (285)
T ss_dssp ----CCEECCHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHHH----SS--EEEEEESCHHHHHHHHHHHTTSTT
T ss_pred CCCCcCccCCHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHhh----CC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence 57999995 77788899998864 68999999999999999888765 21 111222211 0
Q ss_pred CCCCccccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCcccc-ccccccc---cc---
Q 002824 741 KNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETR-RLDQKAS---YN--- 813 (876)
Q Consensus 741 ~~~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~~~~-~~~~~~~---y~--- 813 (876)
.+.+.|...|.+.+. ++.-+ +|++ |+||..-..+..+++.+.-. ++-.++.+-.|+- |+=-+.+ |-
T Consensus 76 ~~~v~~~~~D~~~~~---~~~fD-~vv~-nlpy~~~~~~~~~~l~~~~~--~~~~~~m~qkEva~r~vlkPGg~~y~~ls 148 (285)
T 1zq9_A 76 ASKLQVLVGDVLKTD---LPFFD-TCVA-NLPYQISSPFVFKLLLHRPF--FRCAILMFQREFALRLVAKPGDKLYCRLS 148 (285)
T ss_dssp GGGEEEEESCTTTSC---CCCCS-EEEE-ECCGGGHHHHHHHHHHCSSC--CSEEEEEEEHHHHHHHHCCTTCTTCSHHH
T ss_pred CCceEEEEcceeccc---chhhc-EEEE-ecCcccchHHHHHHHhcCcc--hhhhhhhhhHHHHHHHhcCCCCcccchhh
Confidence 124556666666543 23223 6666 99999655554444443322 3344444444432 1111111 21
Q ss_pred ------eeecccccccCcccccCCccc
Q 002824 814 ------LIWEDNEVLSGKSFYLPGSLD 834 (876)
Q Consensus 814 ------l~~~d~~~l~g~~fy~pg~~d 834 (876)
--++.-..+....|+-|..||
T Consensus 149 v~~~~~~~~~~~~~v~~~~F~P~p~v~ 175 (285)
T 1zq9_A 149 INTQLLARVDHLMKVGKNNFRPPPKVE 175 (285)
T ss_dssp HHHHHHEEEEEEEEECGGGEESCCSSC
T ss_pred hhhhhhhheeeeEEEChhhCCCCCCCc
Confidence 122333346667888777776
No 103
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.48 E-value=0.098 Score=43.53 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=25.1
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
+|..|++..+. ...|++|..|..+||..|+..
T Consensus 8 ~C~~C~~~~~~---~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 8 QCGACGESYAA---DEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp CCSSSCCCCCS---SSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCccCC---CCCEEEccCCCCCCCccccCc
Confidence 45578876532 357999999999999999854
No 104
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=91.37 E-value=0.094 Score=52.79 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=28.8
Q ss_pred ccCCCCc----eeecCcccccccccccccCccccccccCCcccccCCCCceecccccc
Q 002824 221 ICDDGGD----VTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (876)
Q Consensus 221 ICe~gGe----LL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~~~~~W~C~eC~~ 274 (876)
+|+.+|+ +|.|. .|.++||..|+.-..+.+ +++. -.-.|.|..|..
T Consensus 9 YCG~~~~~~~~mLqC~-~C~qWFH~~Cl~~~~~~~--lp~~-----~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGRQLGEVELQCG-ICTKWFTADTFGIDTSSC--LPFM-----TNYSFHCNVCHH 58 (177)
T ss_dssp --CTTCCTTSCEEECT-TTCCEEEGGGGTCCCTTC--CTTC-----CSEEEECTTTST
T ss_pred EcCCCCCCCceeEeec-cccceecHHHhcccccCc--cccc-----eeEEEEccccCC
Confidence 4888776 88998 499999999875222222 2221 245677887763
No 105
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=91.20 E-value=0.042 Score=61.13 Aligned_cols=56 Identities=25% Similarity=0.667 Sum_probs=39.0
Q ss_pred cCCCCccccccCCCCceeecC-cccccccccccccCccccccccCCcc-cccCCCCceeccccc
Q 002824 212 DENYFAVCAICDDGGDVTFCD-GRCLRSFHATITAGKNALCQSLGYTQ-AQIDAVPNFLCQNCV 273 (876)
Q Consensus 212 dd~~d~VCaICe~gGeLL~Cd-G~C~RsFH~~Cl~g~~s~C~sLGlT~-~ev~~~~~W~C~eC~ 273 (876)
++..+.+|.+|.+||+|++|+ ..|.|+|-..|+.- .+|... ..+.....|.|--|.
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~------n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDS------LVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHH------HTCTTHHHHHHHCSSCCCTTTS
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHH------hcChhHHHHhhccCCceEEEcC
Confidence 456789999999999999998 45999999998641 122211 112235788766554
No 106
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=90.97 E-value=0.39 Score=46.38 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=63.5
Q ss_pred ccCcccchhhhHHHHHHhhcc-ccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC------CC--CCccc
Q 002824 677 SFGRHFTKVEKLKEIVDRLHW-YVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP------KN--DFSFE 747 (876)
Q Consensus 677 s~grhft~~ekl~~i~~~l~~-~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~------~~--~~~f~ 747 (876)
.++.+.|..+-...++..+.. ...+|++|+|+.||...|+..+.++ | ....--.|+-+. +| +..|.
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~ 100 (200)
T 1ne2_A 26 YLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL----G-AESVTAFDIDPDAIETAKRNCGGVNFM 100 (200)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT----T-BSEEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred ceeecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHhcCCCEEE
Confidence 456677776655555544432 2448899999999999999888764 2 112222333210 00 34555
Q ss_pred cccccccCCCCCCCCCceeeecCCCcchhhh-hHHHHHHhhhhcCCcEEEEecCcccc
Q 002824 748 KRDWMTVRPEELPDGSQLIMGLNPPFGVKAS-LANKFISQALKFKPKLIVLIVPQETR 804 (876)
Q Consensus 748 ~~~w~~~~~~~l~~g~~li~glnppfg~~~~-~a~kfi~~~~~f~p~~~~li~p~~~~ 804 (876)
..|... +|..=-+|+ .||||+.... ...+|+..++..- ..++++.++.+.
T Consensus 101 ~~d~~~-----~~~~~D~v~-~~~p~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~ 151 (200)
T 1ne2_A 101 VADVSE-----ISGKYDTWI-MNPPFGSVVKHSDRAFIDKAFETS-MWIYSIGNAKAR 151 (200)
T ss_dssp ECCGGG-----CCCCEEEEE-ECCCC-------CHHHHHHHHHHE-EEEEEEEEGGGH
T ss_pred ECcHHH-----CCCCeeEEE-ECCCchhccCchhHHHHHHHHHhc-CcEEEEEcCchH
Confidence 555554 342223555 4999987643 3357888888775 666666666553
No 107
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=90.70 E-value=0.34 Score=51.76 Aligned_cols=143 Identities=16% Similarity=0.213 Sum_probs=81.9
Q ss_pred ccCcccch-hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC-----------CCCCC
Q 002824 677 SFGRHFTK-VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ-----------PKNDF 744 (876)
Q Consensus 677 s~grhft~-~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~-----------~~~~~ 744 (876)
+||.||-. +.-+..|++.+. +.+|++|+|+-||...+...+-++ +.. .--.|+-+ ...++
T Consensus 27 ~~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~----~~~--V~aVEid~~li~~a~~~~~~~~~v 98 (295)
T 3gru_A 27 KLGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN----AKK--VYVIEIDKSLEPYANKLKELYNNI 98 (295)
T ss_dssp ---CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH----SSE--EEEEESCGGGHHHHHHHHHHCSSE
T ss_pred ccCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc----CCE--EEEEECCHHHHHHHHHHhccCCCe
Confidence 79998864 446677777775 468999999999999999888765 211 11112111 11346
Q ss_pred ccccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCccc-cccccc---cccc---e---
Q 002824 745 SFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQET-RRLDQK---ASYN---L--- 814 (876)
Q Consensus 745 ~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~~~-~~~~~~---~~y~---l--- 814 (876)
.|...|.+.+...+.+ -..|+| |+||.+-..+-.++++ ......+|.+..|+ +||=.+ +.|- +
T Consensus 99 ~vi~gD~l~~~~~~~~--fD~Iv~-NlPy~is~pil~~lL~----~~~~~~~lm~Q~eva~Rl~a~pg~k~yg~Lsv~~q 171 (295)
T 3gru_A 99 EIIWGDALKVDLNKLD--FNKVVA-NLPYQISSPITFKLIK----RGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQ 171 (295)
T ss_dssp EEEESCTTTSCGGGSC--CSEEEE-ECCGGGHHHHHHHHHH----HCCSEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHH
T ss_pred EEEECchhhCCcccCC--ccEEEE-eCcccccHHHHHHHHh----cccceEEEeeecccccEEEecCCCcchhHHHHHHH
Confidence 6667777766544321 135666 9999966655555554 33445566555554 454221 1121 1
Q ss_pred ---eecccccccCcccccCCccc
Q 002824 815 ---IWEDNEVLSGKSFYLPGSLD 834 (876)
Q Consensus 815 ---~~~d~~~l~g~~fy~pg~~d 834 (876)
-.+--..++..+|+=|--||
T Consensus 172 ~~~~~~~~~~v~~~~F~P~PkVd 194 (295)
T 3gru_A 172 SRADVEIVAKVPPSAFYPKPKVY 194 (295)
T ss_dssp TTEEEEEEEEECGGGEESCCSSC
T ss_pred hhccEEEEEEECcccCCCcCCCe
Confidence 12223347778888777766
No 108
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=90.50 E-value=0.056 Score=56.21 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=85.7
Q ss_pred chhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCC-----------CCCCCCccccccc
Q 002824 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLI-----------QPKNDFSFEKRDW 751 (876)
Q Consensus 683 t~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~-----------~~~~~~~f~~~~w 751 (876)
+.+.-+..|++.+. +.+|++|+|+-||...+.. +.. +.....--.|+- ....++.|...|.
T Consensus 5 ~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~-----~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~ 76 (252)
T 1qyr_A 5 NDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG-----ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp CCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH-----TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred CCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh-----CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECch
Confidence 45556777888875 5789999999999999998 532 111001111211 1012567777777
Q ss_pred cccCCCCC---CCCCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCccc-cccccccc---c---cee------
Q 002824 752 MTVRPEEL---PDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQET-RRLDQKAS---Y---NLI------ 815 (876)
Q Consensus 752 ~~~~~~~l---~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~~~-~~~~~~~~---y---~l~------ 815 (876)
+.+...++ +...-.|+| ||||.+-..+-.++++.+.. ..-+++.+-.|+ +||-.+.+ | .++
T Consensus 77 ~~~~~~~~~~~~~~~~~vvs-NlPY~i~~~il~~ll~~~~~--~~~~~~m~QkEva~Rl~a~pG~k~yg~lsv~~q~~~~ 153 (252)
T 1qyr_A 77 MTFNFGELAEKMGQPLRVFG-NLPYNISTPLMFHLFSYTDA--IADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCN 153 (252)
T ss_dssp GGCCHHHHHHHHTSCEEEEE-ECCTTTHHHHHHHHHTTGGG--EEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHHHEE
T ss_pred hhCCHHHhhcccCCceEEEE-CCCCCccHHHHHHHHhcCCC--cceEEEEEeHHHHHHhcCCCCCccccHHHHHHHHHhe
Confidence 77654443 223346777 99999666655555554432 345677778888 78632221 2 222
Q ss_pred ecccccccCcccccCCcccc
Q 002824 816 WEDNEVLSGKSFYLPGSLDV 835 (876)
Q Consensus 816 ~~d~~~l~g~~fy~pg~~d~ 835 (876)
.+.-..++.++|+=|-.||.
T Consensus 154 ~~~~~~v~~~~F~P~PkV~S 173 (252)
T 1qyr_A 154 VIPVLEVPPSAFTPPPKVDS 173 (252)
T ss_dssp EEEEEEECGGGEESCCSSCE
T ss_pred EEEEEEEChHHccCCCCceE
Confidence 12234478889998888873
No 109
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.88 E-value=0.15 Score=51.47 Aligned_cols=36 Identities=22% Similarity=0.527 Sum_probs=29.0
Q ss_pred cccccCcCCccccccccceeeccccccccccccCCC
Q 002824 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 343 H~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
++|.+|+...+.++.+..|+.|+.|..+||..|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi 38 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENL 38 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhcccc
Confidence 468889887765544567999999999999999843
No 110
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=89.57 E-value=0.54 Score=51.70 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=43.6
Q ss_pred ChhhhhhHHHhhhccccccccccccccccccC------cccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 648 PPEILCQIFQWKRKLDVYLAPFLHGMRYTSFG------RHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 648 ~p~~l~q~~~~~~kl~~~l~p~l~g~ry~s~g------rhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
.|++--.+..-++.+.++|- +.|...+.-| ..-.+..-...++....| .+|.+|+|++||+.+|....-.
T Consensus 140 ~p~~~i~~~i~~~~~~~~lD--~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~--~~~~~vlDp~CGSGt~lieaa~ 215 (385)
T 3ldu_A 140 KEKYPIFVFIHKDKVTISID--TTGDALHKRGYREKANKAPIRETLAAGLIYLTPW--KAGRVLVDPMCGSGTILIEAAM 215 (385)
T ss_dssp SCBCCEEEEEETTEEEEEEE--SCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCC--CTTSCEEETTCTTCHHHHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEe--cCCChhhhcccccCCCCCCCcHHHHHHHHHhhCC--CCCCeEEEcCCCCCHHHHHHHH
Confidence 46665556666666666554 2333222221 111233344456777777 4788999999999999877655
Q ss_pred HH
Q 002824 722 KL 723 (876)
Q Consensus 722 ~~ 723 (876)
..
T Consensus 216 ~~ 217 (385)
T 3ldu_A 216 IG 217 (385)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=89.40 E-value=0.11 Score=49.82 Aligned_cols=51 Identities=20% Similarity=0.509 Sum_probs=34.6
Q ss_pred CcccccccccCCCCCCCCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHHhhcCCceecCC
Q 002824 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPV 342 (876)
Q Consensus 276 qHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g~~F~CPl 342 (876)
+..|.+|+. +++++-| ..|.+.||..|+.+.+.+. .+.+-+.....|.|+.
T Consensus 57 ~~~C~vC~d--------GG~LlcC--d~Cpr~Fc~~Cl~~~lg~~------~l~~i~~~~~~W~C~~ 107 (129)
T 3ql9_A 57 DEQCRWCAE--------GGNLICC--DFCHNAFCKKCILRNLGRR------ELSTIMDENNQWYCYI 107 (129)
T ss_dssp BSSCTTTCC--------CSEEEEC--SSSSCEEEHHHHHHHTCHH------HHHHHTCTTSCCCCTT
T ss_pred CCcCeecCC--------CCeeEec--CCCchhhhHHHhCCCcchh------HHHHhccCCCCeEcCC
Confidence 456889984 5689988 6999999999999776432 2322112346776653
No 112
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=89.35 E-value=0.2 Score=47.87 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=52.5
Q ss_pred cchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCCCCCCccccccccccCCCCCCC
Q 002824 682 FTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPD 761 (876)
Q Consensus 682 ft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~~~~~~f~~~~w~~~~~~~l~~ 761 (876)
|++..-.+.+++.|..+..+|.+|+|+.||...++..+.++..-+|-+.+-...+. .++..|...|+...- +.
T Consensus 4 ~~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~----~~ 76 (170)
T 3q87_B 4 YEPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---HRGGNLVRADLLCSI----NQ 76 (170)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---CSSSCEEECSTTTTB----CG
T ss_pred cCcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---ccCCeEEECChhhhc----cc
Confidence 34445556677776666678899999999999999988765311122211111111 456777777776522 22
Q ss_pred CC-ceeeecCCCcch
Q 002824 762 GS-QLIMGLNPPFGV 775 (876)
Q Consensus 762 g~-~li~glnppfg~ 775 (876)
++ -+|+. ||||..
T Consensus 77 ~~fD~i~~-n~~~~~ 90 (170)
T 3q87_B 77 ESVDVVVF-NPPYVP 90 (170)
T ss_dssp GGCSEEEE-CCCCBT
T ss_pred CCCCEEEE-CCCCcc
Confidence 33 35555 999973
No 113
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.29 E-value=0.034 Score=49.86 Aligned_cols=33 Identities=24% Similarity=0.839 Sum_probs=26.7
Q ss_pred cccccccccCCCCCCCCCceeccCCCccCCCCccccccccC
Q 002824 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 277 HqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
..|.+|+... ...++.| ..|+|.||..|+.+.-
T Consensus 16 ~~C~VC~~~t------~~~l~pC--RvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 16 EMCDVCEVWT------AESLFPC--RVCTRVFHDGCLRRMG 48 (89)
T ss_dssp CCCTTTCCCC------SSCCSSC--SSSSSCCCHHHHHHHT
T ss_pred cccCcccccc------ccceecc--ccccccccHhhccccc
Confidence 4688887654 4689999 8999999999998743
No 114
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=89.14 E-value=0.63 Score=51.64 Aligned_cols=120 Identities=19% Similarity=0.287 Sum_probs=67.9
Q ss_pred cccccccCcccch--hhhHHHHHHhhccc--cccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------
Q 002824 672 GMRYTSFGRHFTK--VEKLKEIVDRLHWY--VRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP------- 740 (876)
Q Consensus 672 g~ry~s~grhft~--~ekl~~i~~~l~~~--~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~------- 740 (876)
|.+|.---..|.+ .+-.+.+++.+.-+ +.+|++|+|++||...|+..|.++ + ...--.|+.+.
T Consensus 253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~----~--~~V~gvD~s~~al~~A~~ 326 (433)
T 1uwv_A 253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ----A--ASVVGVEGVPALVEKGQQ 326 (433)
T ss_dssp TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT----S--SEEEEEESCHHHHHHHHH
T ss_pred CEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh----C--CEEEEEeCCHHHHHHHHH
Confidence 5555422233444 33344455544333 357889999999999999888654 1 11112222210
Q ss_pred ------CCCCccccccccccCCC-CCCCCCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEecCc
Q 002824 741 ------KNDFSFEKRDWMTVRPE-ELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQ 801 (876)
Q Consensus 741 ------~~~~~f~~~~w~~~~~~-~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~p~ 801 (876)
-++..|...|+.+.-+. .++.++.=++-+|||+.- +..++...+.++|+-||.|.-+
T Consensus 327 n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g----~~~~~~~l~~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 327 NARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIKLEPIRIVYVSCN 390 (433)
T ss_dssp HHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHHHCCSEEEEEESC
T ss_pred HHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCcc----HHHHHHHHHhcCCCeEEEEECC
Confidence 01466777777664322 123333223335999862 2357777788899998877543
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.11 E-value=0.21 Score=46.02 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=39.0
Q ss_pred CCcccccCcCCccccccccceeecc-ccccccccccCCCCcccccccchhhhhhhhccCCCCceeEEccCCcccc
Q 002824 341 PVHKCFVCQQSEDMNVEDLQLAICR-RCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIIS 414 (876)
Q Consensus 341 PlH~C~~C~~sedk~~~~~qLi~C~-RCPkAYH~kCLP~gi~f~~~~~e~~~raW~~ll~~~riLI~C~kH~i~~ 414 (876)
|...|..|.+..+. ++.++.|. .|..|||..|+..... . ...|..+...-++|+.|....
T Consensus 2 ~~~~C~iC~~p~~~---~~~mi~Cdd~C~~WfH~~CVglt~~-------~----~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 2 LVYPCGACRSEVND---DQDAILCEASCQKWFHRECTGMTES-------A----YGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCCBCTTTCSBCCT---TSCEEECTTTTCCEEEGGGTTCCHH-------H----HHHHHHCTTEEECCHHHHHTT
T ss_pred CcCCCCCCCCccCC---CCCEEEecCCcccccccccCCcCHH-------H----HHhhccCCCCCEECccccCcC
Confidence 45578899997542 34699998 9999999999854321 0 011111123578999987653
No 116
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.85 E-value=0.11 Score=50.94 Aligned_cols=31 Identities=35% Similarity=0.852 Sum_probs=24.3
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
+| .|+...+ ..+.++.|..|+.|||..|+..
T Consensus 10 ~C-~C~~~~~---~~~~mi~Cd~C~~WfH~~Cv~~ 40 (174)
T 2ri7_A 10 YC-ICKTPED---ESKFYIGCDRCQNWYHGRCVGI 40 (174)
T ss_dssp ET-TTTEECC---TTSCEEECTTTCCEEEHHHHTC
T ss_pred Ee-eCCCCCC---CCCCEeECCCCCchhChhhcCC
Confidence 46 7877653 2457999999999999999854
No 117
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=87.45 E-value=1.3 Score=48.82 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=43.5
Q ss_pred ChhhhhhHHHhhhccccccccccccc-----ccccc-CcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 648 PPEILCQIFQWKRKLDVYLAPFLHGM-----RYTSF-GRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 648 ~p~~l~q~~~~~~kl~~~l~p~l~g~-----ry~s~-grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
.|++.-.+..-++.+.++|- +.|. -|-.+ |..-.+..-...++....| .+|+.|+|.+||+.+|.-..-.
T Consensus 146 ~Pd~~i~v~l~~~~~~~~ld--~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~--~~~~~vlDp~CGSGt~~ieaa~ 221 (393)
T 3k0b_A 146 GALFKLEVSILKDEVTLTID--TSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSW--HPDRPFYDPVCGSGTIPIEAAL 221 (393)
T ss_dssp SSBCCEEEEEETTEEEEEEE--SSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCC--CTTSCEEETTCTTSHHHHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEe--cCCCcccccccccCCCCCCCcHHHHHHHHHHhCC--CCCCeEEEcCCCCCHHHHHHHH
Confidence 57776666666666665554 2333 23222 2222233344557777777 4788999999999999766544
Q ss_pred H
Q 002824 722 K 722 (876)
Q Consensus 722 ~ 722 (876)
.
T Consensus 222 ~ 222 (393)
T 3k0b_A 222 I 222 (393)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=87.03 E-value=0.32 Score=39.18 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=24.4
Q ss_pred cccCcCCccccccccceeecc-ccccccccccCCC
Q 002824 345 CFVCQQSEDMNVEDLQLAICR-RCPKAYHRKCLPT 378 (876)
Q Consensus 345 C~~C~~sedk~~~~~qLi~C~-RCPkAYH~kCLP~ 378 (876)
|.+|++..+. +..++.|. .|..+||..|+..
T Consensus 5 cc~C~~p~~~---~~~mI~Cd~~C~~WfH~~Cvgl 36 (52)
T 2kgg_A 5 AQNCQRPCKD---KVDWVQCDGGCDEWFHQVCVGV 36 (52)
T ss_dssp CTTCCCCCCT---TCCEEECTTTTCCEEETTTTTC
T ss_pred CCCCcCccCC---CCcEEEeCCCCCccCcccccCC
Confidence 6677776542 45799999 9999999999844
No 119
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.47 E-value=0.19 Score=43.27 Aligned_cols=30 Identities=27% Similarity=0.841 Sum_probs=23.9
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
+| .|++..+ ...|+.|..|..+||..|+..
T Consensus 18 ~C-~C~~~~~----~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 18 YC-ICRQPHN----NRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp CS-TTCCCCC----SSCEEECSSSCCEEEHHHHSC
T ss_pred EE-ECCCccC----CCCEEEeCCCCCcEeCeEEcc
Confidence 45 6887654 347999999999999999854
No 120
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=86.25 E-value=0.19 Score=48.34 Aligned_cols=111 Identities=11% Similarity=0.150 Sum_probs=61.8
Q ss_pred cchhhhHHHHHHhhccc-cccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------CCCCccc
Q 002824 682 FTKVEKLKEIVDRLHWY-VRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------KNDFSFE 747 (876)
Q Consensus 682 ft~~ekl~~i~~~l~~~-~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~~~~~f~ 747 (876)
.|...-.+.+++.|.-+ ..+|.+|+|++||...++..+-.+ |. ...--.|+-+. -++..|.
T Consensus 24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~ 98 (189)
T 3p9n_A 24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR----GA-ASVLFVESDQRSAAVIARNIEALGLSGATLR 98 (189)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEECCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC----CC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 34444445555555432 258899999999999998855432 11 11111222110 0346677
Q ss_pred cccccccCCCCCCCCC-ceeeecCCCcchhhhhHHHHHHhhhh---cCCcEEEEec
Q 002824 748 KRDWMTVRPEELPDGS-QLIMGLNPPFGVKASLANKFISQALK---FKPKLIVLIV 799 (876)
Q Consensus 748 ~~~w~~~~~~~l~~g~-~li~glnppfg~~~~~a~kfi~~~~~---f~p~~~~li~ 799 (876)
..|+.+..+. ++.++ -+|+. ||||........+++..+.. .+|.=+++|.
T Consensus 99 ~~d~~~~~~~-~~~~~fD~i~~-~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 99 RGAVAAVVAA-GTTSPVDLVLA-DPPYNVDSADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp ESCHHHHHHH-CCSSCCSEEEE-CCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred EccHHHHHhh-ccCCCccEEEE-CCCCCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 7777665321 22333 35554 99999754556666776664 6777555553
No 121
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=86.07 E-value=1.7 Score=48.00 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=43.9
Q ss_pred ChhhhhhHHHhhhccccccc---cccccccccccC-cccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 648 PPEILCQIFQWKRKLDVYLA---PFLHGMRYTSFG-RHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 648 ~p~~l~q~~~~~~kl~~~l~---p~l~g~ry~s~g-rhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.|++.-.+..-++..-++|- .-||-.-|-.+. ..=.+..-...++....| .+|++|+|.+||+.+|.-..-..
T Consensus 139 ~pd~~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~--~~~~~llDp~CGSGt~lIEAa~~ 215 (384)
T 3ldg_A 139 GPEFKIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNW--FPDKPFVDPTCGSGTFCIEAAMI 215 (384)
T ss_dssp SCBCEEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHTTC--CTTSCEEETTCTTSHHHHHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHhCC--CCCCeEEEeCCcCCHHHHHHHHH
Confidence 67777777777777766654 122322232211 111122344556777787 47899999999999997655443
No 122
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=86.03 E-value=0.23 Score=45.53 Aligned_cols=37 Identities=19% Similarity=0.510 Sum_probs=26.7
Q ss_pred eeecCcccccccccccccCccccccccCCcc------cccCCCCceeccccccc
Q 002824 228 VTFCDGRCLRSFHATITAGKNALCQSLGYTQ------AQIDAVPNFLCQNCVYQ 275 (876)
Q Consensus 228 LL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~------~ev~~~~~W~C~eC~~g 275 (876)
+|.|| .|.+|||..| ++++. ..++....|.|+.|...
T Consensus 2 mi~c~-~c~~w~H~~c----------~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCG-KCDRWVHSKC----------ENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCS-CCSSCHHHHH----------CCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccc-cCCCccCCcc----------cccCHHHHHHHhhccccceeeCcccccc
Confidence 78999 5999999996 45554 22233457999999753
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=85.91 E-value=0.37 Score=41.14 Aligned_cols=30 Identities=20% Similarity=0.537 Sum_probs=23.8
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
+| .|++..+ +..|+.|..|..+||..|+..
T Consensus 21 ~C-iC~~~~~----~~~MIqCd~C~~WfH~~Cvgi 50 (68)
T 3o70_A 21 TC-FCMKPFA----GRPMIECNECHTWIHLSCAKI 50 (68)
T ss_dssp CS-TTCCCCT----TCCEEECTTTCCEEETTTTTC
T ss_pred Ee-ECCCcCC----CCCEEECCCCCccccccccCc
Confidence 45 7877553 347999999999999999854
No 124
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=85.34 E-value=1.9 Score=42.25 Aligned_cols=101 Identities=15% Similarity=0.296 Sum_probs=57.0
Q ss_pred hccccccCCeEEeeccC-cchhhHHHHHHHHHcCCcccccCCCCCCC------------CCCCccccccccccCCCCCCC
Q 002824 695 LHWYVRSGDTIVDFCCG-ANDFSCMMKVKLEQMGKSCSFRNYDLIQP------------KNDFSFEKRDWMTVRPEELPD 761 (876)
Q Consensus 695 l~~~~~~~d~~vd~~cg-~~~f~~l~~~~~~~~~~~~~~kn~d~~~~------------~~~~~f~~~~w~~~~~~~l~~ 761 (876)
+.+++.+|++|+|++|| ...++..+.++. +. .+--.|+-+. ..+..|...|+... ..++.
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~---~~--~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~--~~~~~ 121 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFF---NC--KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII--KGVVE 121 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHH---CC--EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS--TTTCC
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhc---CC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhh--hhccc
Confidence 45678999999999999 999998887764 11 1112222111 00455666665322 23454
Q ss_pred CCceeeecCCCcchhh------------------hhHHHHHHhhhhc-CCcE-EEEecCcc
Q 002824 762 GSQLIMGLNPPFGVKA------------------SLANKFISQALKF-KPKL-IVLIVPQE 802 (876)
Q Consensus 762 g~~li~glnppfg~~~------------------~~a~kfi~~~~~f-~p~~-~~li~p~~ 802 (876)
++.=++-.||||.... .+..+|+..+... +|.= +++++|..
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK 182 (230)
T ss_dssp SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 5543333699985422 1236777777653 5553 34445543
No 125
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=84.83 E-value=0.71 Score=48.34 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=43.5
Q ss_pred ccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCC--------------CCCCCCccccccccccCCCCCCCCCce
Q 002824 700 RSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLI--------------QPKNDFSFEKRDWMTVRPEELPDGSQL 765 (876)
Q Consensus 700 ~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~--------------~~~~~~~f~~~~w~~~~~~~l~~g~~l 765 (876)
.++..|+|++||+..+...+.+. . .+..--.|+. .-.|...|...||.+.-+..+... -+
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~----~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~-D~ 195 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-S----DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASI-EM 195 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-S----SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTC-CE
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCC-CE
Confidence 37789999999999999888765 1 1222222322 223558899999987433211111 35
Q ss_pred eeecCCCcchh
Q 002824 766 IMGLNPPFGVK 776 (876)
Q Consensus 766 i~glnppfg~~ 776 (876)
|+. ||||.-.
T Consensus 196 Ivs-nPPyi~~ 205 (284)
T 1nv8_A 196 ILS-NPPYVKS 205 (284)
T ss_dssp EEE-CCCCBCG
T ss_pred EEE-cCCCCCc
Confidence 665 9999744
No 126
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=84.28 E-value=0.85 Score=54.11 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=45.9
Q ss_pred ChhhhhhHHHhhhccccccc---cccccccccc-cCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 648 PPEILCQIFQWKRKLDVYLA---PFLHGMRYTS-FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 648 ~p~~l~q~~~~~~kl~~~l~---p~l~g~ry~s-~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.|++.-.+..-++.+-++|- .-||-.-|.. .|..=.+..-...++....|. +|++|+|.+||+.+|.-..-..
T Consensus 135 ~pd~~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~--~~~~llDP~CGSGt~lIeAa~~ 211 (703)
T 3v97_A 135 APDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQ--PGTPLLDPMCGSGTLLIEAAML 211 (703)
T ss_dssp SCSEEEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCC--TTSCEEETTCTTSHHHHHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhhCCC--CCCeEEecCCCCcHHHHHHHHH
Confidence 67777677666777666654 1233333422 222233344556677777774 7889999999999997655443
No 127
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.96 E-value=0.32 Score=41.30 Aligned_cols=32 Identities=28% Similarity=0.704 Sum_probs=25.8
Q ss_pred ccccCcCCccccccccceeecc-ccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICR-RCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~-RCPkAYH~kCLP~ 378 (876)
.|..|++..+. +..++.|. .|..+||..|+--
T Consensus 10 ~C~~C~~p~~~---~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 10 PCGICTNEVND---DQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp BCTTTCSBCCT---TSCEEEBTTTTCCEEEHHHHTC
T ss_pred cCccCCCccCC---CCCeEecccCccccCchhccCC
Confidence 57789997643 35799999 9999999999833
No 128
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.95 E-value=0.3 Score=42.44 Aligned_cols=31 Identities=23% Similarity=0.642 Sum_probs=24.3
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
+| .|+...+ ....|++|..|..+||..|+..
T Consensus 14 ~C-~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl 44 (79)
T 1wep_A 14 YC-LCRQPYN---VNHFMIECGLCQDWFHGSCVGI 44 (79)
T ss_dssp CS-TTSCSCC---SSSCEEEBTTTCCEEEHHHHTC
T ss_pred EE-EcCCccC---CCCceEEcCCCCCcEEeeecCc
Confidence 44 7887653 2458999999999999999854
No 129
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=83.67 E-value=0.58 Score=46.41 Aligned_cols=50 Identities=24% Similarity=0.592 Sum_probs=38.2
Q ss_pred CcccccccccCCCCCCCCCceeccCCCccCCCCccccccccCCCCchhHHHHHHHHhhcCCceec
Q 002824 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTC 340 (876)
Q Consensus 276 qHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g~~F~C 340 (876)
+..|.+|+. +++|+-|....|.+.|=..||..+..+.. + ..|....+|.|
T Consensus 79 ~~yC~wC~~--------Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~------~-~~i~~~d~W~C 128 (159)
T 3a1b_A 79 QSYCTICCG--------GREVLMCGNNNCCRCFCVECVDLLVGPGA------A-QAAIKEDPWNC 128 (159)
T ss_dssp BSSCTTTSC--------CSEEEECSSTTTCCEEEHHHHHHHTCTTH------H-HHHHTSSSCCC
T ss_pred cceeeEecC--------CCeEEeeCCCCCCCchhHHHHHHhcCHhH------H-HHHhccCCCEE
Confidence 457899984 56999998889999999999999887642 2 23555667754
No 130
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=82.73 E-value=0.89 Score=44.71 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=43.6
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--CCCCccccccccc
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--KNDFSFEKRDWMT 753 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--~~~~~f~~~~w~~ 753 (876)
.+||.||.++... +.+|++|||++||.-.|+..+-++ ....--.|+.+. .....|..-|..+
T Consensus 10 ~~KL~ei~~~~~~-~~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 10 AFKLEFLLDRYRV-VRKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEMEEIAGVRFIRCDIFK 73 (191)
T ss_dssp HHHHHHHHHHHCC-SCTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCCCCTTCEEEECCTTS
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccccCCCeEEEEccccC
Confidence 4699999999764 679999999999999999998776 222333444432 2345666666544
No 131
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.35 E-value=0.67 Score=39.56 Aligned_cols=31 Identities=23% Similarity=0.625 Sum_probs=23.3
Q ss_pred ccccCcCCccccccccceeeccccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
+| .|+...+. ...|+.|..|..+||..|+..
T Consensus 18 ~C-~C~~~~~~---g~~mI~Cd~C~~W~H~~Cvg~ 48 (72)
T 1wee_A 18 DC-KCGTKDDD---GERMLACDGCGVWHHTRCIGI 48 (72)
T ss_dssp CC-TTCCCSCC---SSCEEECSSSCEEEETTTTTC
T ss_pred Ee-eCCCccCC---CCcEEECCCCCCccCCeeecc
Confidence 34 47775431 236999999999999999854
No 132
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=82.28 E-value=1.1 Score=38.55 Aligned_cols=23 Identities=26% Similarity=0.722 Sum_probs=18.2
Q ss_pred CceeccCCCccC-CCCcccccccc
Q 002824 294 QEVFPCVSATCG-QFYHPECVSKL 316 (876)
Q Consensus 294 ~eV~kCsv~~CG-kfYH~~CL~~~ 316 (876)
+.++.|-...|. ..||..||...
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~ 50 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT 50 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS
T ss_pred CCEeEeeCCCCCCccEecccCCcC
Confidence 589999544488 69999999843
No 133
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.91 E-value=1.2 Score=40.32 Aligned_cols=32 Identities=25% Similarity=0.706 Sum_probs=22.7
Q ss_pred ccccccccCCCCCCCCCceeccCCCccC-CCCcccccccc
Q 002824 278 QCFACGMLGSSDKSSSQEVFPCVSATCG-QFYHPECVSKL 316 (876)
Q Consensus 278 qCfiCgklGssd~ss~~eV~kCsv~~CG-kfYH~~CL~~~ 316 (876)
.| +|++.. .+.++.|....|. .+||..||...
T Consensus 38 yC-iC~~~~------~g~MI~CD~~dC~~~WfH~~CVgl~ 70 (91)
T 1weu_A 38 YC-LCHQVS------YGEMIGCDNPDCSIEWFHFACVGLT 70 (91)
T ss_dssp CS-TTCCBC------CSCCCCCSCSSCSCCCCCSTTTTCS
T ss_pred EE-ECCCCC------CCCEeEecCCCCCCCCEecccCCcC
Confidence 35 676542 3589999544488 69999999843
No 134
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=81.32 E-value=0.48 Score=39.78 Aligned_cols=29 Identities=28% Similarity=0.757 Sum_probs=22.9
Q ss_pred ccccCcCCccccccccceeeccc--cc-cccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICRR--CP-KAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~R--CP-kAYH~kCLP~ 378 (876)
+| .|++..+ +.|+.|+. || .+||..|+..
T Consensus 13 yC-~C~~~~~-----g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 13 YC-LCNQVSY-----GEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp ET-TTTEECC-----SEEEECSCTTCSSCEEETGGGTC
T ss_pred EE-ECCCCCC-----CCeeeeeCCCCCcccEecccCCc
Confidence 46 7877542 47999999 88 9999999964
No 135
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=81.11 E-value=1.8 Score=48.19 Aligned_cols=114 Identities=18% Similarity=0.329 Sum_probs=62.4
Q ss_pred cccccc-ccCcccc-hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------
Q 002824 671 HGMRYT-SFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------- 740 (876)
Q Consensus 671 ~g~ry~-s~grhft-~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------- 740 (876)
.|.+|. +.+-+|- +.+-.+.+++.+.- +.+|++|+|++||...|+..+-++ +. ..--.|+.+.
T Consensus 259 ~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~----~~--~V~gvD~s~~ai~~A~~n 331 (425)
T 2jjq_A 259 DDVDYLIHPNSFFQTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKR----GF--NVKGFDSNEFAIEMARRN 331 (425)
T ss_dssp TTEEEEECTTSCCCSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHT----TC--EEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEccccccccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHc----CC--EEEEEECCHHHHHHHHHH
Confidence 455554 3333332 23333333333333 788999999999999999887654 21 1111222110
Q ss_pred --CCC--CccccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhcCCcEEEEec
Q 002824 741 --KND--FSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIV 799 (876)
Q Consensus 741 --~~~--~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f~p~~~~li~ 799 (876)
.|. ..|...|...+.+. .-+ +|+ +|||.. .+..++++.+...+|.=+++|.
T Consensus 332 ~~~ngl~v~~~~~d~~~~~~~---~fD-~Vv-~dPPr~---g~~~~~~~~l~~l~p~givyvs 386 (425)
T 2jjq_A 332 VEINNVDAEFEVASDREVSVK---GFD-TVI-VDPPRA---GLHPRLVKRLNREKPGVIVYVS 386 (425)
T ss_dssp HHHHTCCEEEEECCTTTCCCT---TCS-EEE-ECCCTT---CSCHHHHHHHHHHCCSEEEEEE
T ss_pred HHHcCCcEEEEECChHHcCcc---CCC-EEE-EcCCcc---chHHHHHHHHHhcCCCcEEEEE
Confidence 001 45666666554332 222 444 499952 2444567777778998777775
No 136
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=80.33 E-value=0.74 Score=38.23 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=22.0
Q ss_pred cccccCCCCCCCCCceeccCCCccC-CCCcccccccc
Q 002824 281 ACGMLGSSDKSSSQEVFPCVSATCG-QFYHPECVSKL 316 (876)
Q Consensus 281 iCgklGssd~ss~~eV~kCsv~~CG-kfYH~~CL~~~ 316 (876)
+|++.. .++++.|....|. ..||..||+..
T Consensus 13 ~C~~~~------~g~mi~CD~~~C~~~wfH~~Cvgl~ 43 (59)
T 3c6w_A 13 LCHQVS------YGEMIGCDNPDCPIEWFHFACVDLT 43 (59)
T ss_dssp TTTEEC------CSEEEECSCTTCSSCEEETGGGTCS
T ss_pred ECCCCC------CCCeeEeeCCCCCCCCEecccCCcc
Confidence 576542 3689999544588 69999999844
No 137
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=80.06 E-value=0.83 Score=50.95 Aligned_cols=37 Identities=27% Similarity=0.662 Sum_probs=31.6
Q ss_pred CcccccccccCCCCCCCCCceeccCCCccCCCCccccccccCCCC
Q 002824 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPD 320 (876)
Q Consensus 276 qHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p~ 320 (876)
+.+|..|+. +++|+-|....|.+.|=..|+..+..+.
T Consensus 93 ~~yCr~C~~--------Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~ 129 (386)
T 2pv0_B 93 QSYCSICCS--------GETLLICGNPDCTRCYCFECVDSLVGPG 129 (386)
T ss_dssp BCSCTTTCC--------CSSCEECCSTTCCCEECHHHHHHHTCTT
T ss_pred cccceEcCC--------CCeEEEeCCCCCCcchHHHHHHHhcChh
Confidence 457899984 4689999888999999999999988765
No 138
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=80.02 E-value=0.99 Score=48.08 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=33.8
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+||.||.+| + ++++|++|||+-|+--.||+..-++
T Consensus 59 ayKL~EIdeK-~-likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 59 TAKLRWLVER-R-FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp HHHHHHHHHT-T-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred HHHHHHHHHc-C-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 6799999999 5 9999999999999999999998875
No 139
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=79.48 E-value=1.6 Score=44.71 Aligned_cols=68 Identities=16% Similarity=0.361 Sum_probs=41.8
Q ss_pred ccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------CCCCccccccccccCCCCCCCCC-ce
Q 002824 700 RSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------KNDFSFEKRDWMTVRPEELPDGS-QL 765 (876)
Q Consensus 700 ~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~~~~~f~~~~w~~~~~~~l~~g~-~l 765 (876)
.++..|+|++||+..+...+.+.+. ...+--.|+.+. -.+..|...||.+.- +.+. -+
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~----~~~~fD~ 179 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL----AGQQFAM 179 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG----TTCCEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc----ccCCccE
Confidence 6788999999999999988876531 122222233211 014677788887642 2343 35
Q ss_pred eeecCCCcchh
Q 002824 766 IMGLNPPFGVK 776 (876)
Q Consensus 766 i~glnppfg~~ 776 (876)
|+. ||||...
T Consensus 180 Iv~-npPy~~~ 189 (276)
T 2b3t_A 180 IVS-NPPYIDE 189 (276)
T ss_dssp EEE-CCCCBCT
T ss_pred EEE-CCCCCCc
Confidence 554 9999643
No 140
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=79.02 E-value=1.4 Score=42.11 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=44.2
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCCC--CCCccccccccc
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPK--NDFSFEKRDWMT 753 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~~--~~~~f~~~~w~~ 753 (876)
-.||.++.+++. ++.+|++|+|++||.-.++..+-+++.. ..+..--.|+.+-. ....|...|+.+
T Consensus 7 ~~kl~~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~~~~~v~~~~~d~~~ 74 (201)
T 2plw_A 7 AYKLIELDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKN--YKNKIIGIDKKIMDPIPNVYFIQGEIGK 74 (201)
T ss_dssp HHHHHHHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTT--SCEEEEEEESSCCCCCTTCEEEECCTTT
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCC--CCceEEEEeCCccCCCCCceEEEccccc
Confidence 358999999875 5789999999999999999998776421 02344445555421 234555555544
No 141
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.64 E-value=0.59 Score=40.60 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=23.7
Q ss_pred ccccCcCCccccccccceeecc--ccccccccccCCC
Q 002824 344 KCFVCQQSEDMNVEDLQLAICR--RCPKAYHRKCLPT 378 (876)
Q Consensus 344 ~C~~C~~sedk~~~~~qLi~C~--RCPkAYH~kCLP~ 378 (876)
+| .|+...+ .+.|+.|. .|+.|||..|+..
T Consensus 18 ~C-iC~~~~~----~g~MI~CD~~~C~~W~H~~CVgi 49 (78)
T 1wew_A 18 RC-VCGNSLE----TDSMIQCEDPRCHVWQHVGCVIL 49 (78)
T ss_dssp CC-SSCCCCC----CSCEEECSSTTTCCEEEHHHHSC
T ss_pred Ee-ECCCcCC----CCCEEEECCccCCccccCEEEcc
Confidence 45 6888632 35899999 9999999999844
No 142
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=78.62 E-value=0.9 Score=37.74 Aligned_cols=30 Identities=23% Similarity=0.645 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCCceeccCCCccC-CCCcccccccc
Q 002824 281 ACGMLGSSDKSSSQEVFPCVSATCG-QFYHPECVSKL 316 (876)
Q Consensus 281 iCgklGssd~ss~~eV~kCsv~~CG-kfYH~~CL~~~ 316 (876)
+|++.. .+.++.|....|. ..||..||...
T Consensus 14 ~C~~~~------~g~mi~CD~cdC~~~wfH~~Cvgl~ 44 (60)
T 2vnf_A 14 LCHQVS------YGEMIGCDNPDCSIEWFHFACVGLT 44 (60)
T ss_dssp TTTEEC------CSEEEECSCTTCSSCEEETGGGTCS
T ss_pred ECCCcC------CCCEEEeCCCCCCCceEehhcCCCC
Confidence 576542 3689999444487 79999999843
No 143
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=78.11 E-value=2.4 Score=43.80 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=48.8
Q ss_pred cccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------CCCCccccccccccCCCCCCCCCce
Q 002824 699 VRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------KNDFSFEKRDWMTVRPEELPDGSQL 765 (876)
Q Consensus 699 ~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~~~~~f~~~~w~~~~~~~l~~g~~l 765 (876)
+.+|++|+|++||...|+..+-++. +.+..-..|+.+. -++..|...|.... +. .+..=
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~----~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~D 188 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYS----KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVAD 188 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT----CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCce
Confidence 7899999999999999999887662 2233333333221 01345666666665 33 22222
Q ss_pred eeecCCCcchhhhhHHHHHHhhh-hcCCcEEEE
Q 002824 766 IMGLNPPFGVKASLANKFISQAL-KFKPKLIVL 797 (876)
Q Consensus 766 i~glnppfg~~~~~a~kfi~~~~-~f~p~~~~l 797 (876)
++-+|||++... |+..++ ..+|.=+++
T Consensus 189 ~Vi~d~p~~~~~-----~l~~~~~~LkpgG~l~ 216 (272)
T 3a27_A 189 RVIMGYVHKTHK-----FLDKTFEFLKDRGVIH 216 (272)
T ss_dssp EEEECCCSSGGG-----GHHHHHHHEEEEEEEE
T ss_pred EEEECCcccHHH-----HHHHHHHHcCCCCEEE
Confidence 334589985443 444443 335543333
No 144
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=77.70 E-value=6.8 Score=35.57 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=50.4
Q ss_pred hhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--CCCCCccccccccccC-----CCC
Q 002824 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--PKNDFSFEKRDWMTVR-----PEE 758 (876)
Q Consensus 686 ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--~~~~~~f~~~~w~~~~-----~~~ 758 (876)
.+|.++++++. ++.+|+.|+|+.||...++..+.+++ |..+.+--.|+-+ .-....|...|+.+.. +..
T Consensus 8 ~~l~~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 8 FKLDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQI---GGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHH---CTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHh---CCCCeEEEEECccccccCcEEEEEcccccchhhhhhhcc
Confidence 46788888765 57899999999999999999988775 2222333333322 1134555555555432 000
Q ss_pred CCCCC-ceeeecCCCcc
Q 002824 759 LPDGS-QLIMGLNPPFG 774 (876)
Q Consensus 759 l~~g~-~li~glnppfg 774 (876)
++.++ .+|+. |+|+.
T Consensus 84 ~~~~~~D~i~~-~~~~~ 99 (180)
T 1ej0_A 84 VGDSKVQVVMS-DMAPN 99 (180)
T ss_dssp HTTCCEEEEEE-CCCCC
T ss_pred CCCCceeEEEE-CCCcc
Confidence 34444 35554 77764
No 145
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=77.57 E-value=3.3 Score=40.49 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=41.5
Q ss_pred ccccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 673 MRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 673 ~ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
..+..+|.++..+.-...+++.|.-++.+|+.|+|++||...++..|-+.+
T Consensus 49 ~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~ 99 (226)
T 1i1n_A 49 PQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMV 99 (226)
T ss_dssp CEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred ccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHh
Confidence 334456778888887778888887788999999999999999998887664
No 146
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=77.17 E-value=0.81 Score=46.48 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=43.3
Q ss_pred cc-cCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCC--------------CCCCCCCccccccccccCCCCCCCCC
Q 002824 699 VR-SGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDL--------------IQPKNDFSFEKRDWMTVRPEELPDGS 763 (876)
Q Consensus 699 ~~-~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~--------------~~~~~~~~f~~~~w~~~~~~~l~~g~ 763 (876)
+. +|+.|+|++||...++..+.++. .. ..--.|+ .+-.+...|...|+.+..+ .++.++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~----~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~-~~~~~~ 119 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRT----KA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD-LIPKER 119 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTC----CC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG-TSCTTC
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhc----CC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh-hhccCC
Confidence 44 79999999999999999887652 11 2222222 2223456777777766543 355555
Q ss_pred ceeeecCCCcchh
Q 002824 764 QLIMGLNPPFGVK 776 (876)
Q Consensus 764 ~li~glnppfg~~ 776 (876)
.=++-.||||...
T Consensus 120 fD~Ii~npPy~~~ 132 (259)
T 3lpm_A 120 ADIVTCNPPYFAT 132 (259)
T ss_dssp EEEEEECCCC---
T ss_pred ccEEEECCCCCCC
Confidence 4444459999544
No 147
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=76.48 E-value=1.9 Score=38.99 Aligned_cols=23 Identities=22% Similarity=0.644 Sum_probs=17.5
Q ss_pred CceeccCCCccC-CCCcccccccc
Q 002824 294 QEVFPCVSATCG-QFYHPECVSKL 316 (876)
Q Consensus 294 ~eV~kCsv~~CG-kfYH~~CL~~~ 316 (876)
++++.|..-.|. .+||..||...
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~ 60 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK 60 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS
T ss_pred CCEEEecCCCCccccCcCccCCCC
Confidence 579999444466 79999999843
No 148
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=76.44 E-value=4.3 Score=37.83 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=66.0
Q ss_pred ccccccc--ccCcccchh---hhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC-----
Q 002824 670 LHGMRYT--SFGRHFTKV---EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ----- 739 (876)
Q Consensus 670 l~g~ry~--s~grhft~~---ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~----- 739 (876)
+.|..|. +-...|+.. +-.+.+++.+.. .+|+.|+|+.||...++..+-++ +. .+--.|+-+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~~~~~----~~--~v~~~D~~~~~~~~ 89 (194)
T 1dus_A 18 LRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV--DKDDDILDLGCGYGVIGIALADE----VK--STTMADINRRAIKL 89 (194)
T ss_dssp ETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC--CTTCEEEEETCTTSHHHHHHGGG----SS--EEEEEESCHHHHHH
T ss_pred cCCCceEEEeCCCcCCccccchHHHHHHHHccc--CCCCeEEEeCCCCCHHHHHHHHc----CC--eEEEEECCHHHHHH
Confidence 4455443 334556555 566777777753 48999999999999888766543 11 222222211
Q ss_pred ---------CCC-CCccccccccccCCCCCCCCC-ceeeecCCCcchhhhhHHHHHHhhhh-cCCc-EEEEecCc
Q 002824 740 ---------PKN-DFSFEKRDWMTVRPEELPDGS-QLIMGLNPPFGVKASLANKFISQALK-FKPK-LIVLIVPQ 801 (876)
Q Consensus 740 ---------~~~-~~~f~~~~w~~~~~~~l~~g~-~li~glnppfg~~~~~a~kfi~~~~~-f~p~-~~~li~p~ 801 (876)
..| ...|...|+.+. ++.++ .+|+ .||||........+|+..+.. .+|. .+++++|.
T Consensus 90 a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 90 AKENIKLNNLDNYDIRVVHSDLYEN----VKDRKYNKII-TNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp HHHHHHHTTCTTSCEEEEECSTTTT----CTTSCEEEEE-ECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred HHHHHHHcCCCccceEEEECchhcc----cccCCceEEE-ECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 111 255666666542 22333 3555 499987533444566666553 3454 34444444
No 149
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=75.59 E-value=2.2 Score=43.75 Aligned_cols=104 Identities=20% Similarity=0.202 Sum_probs=55.7
Q ss_pred cccCCeEEeeccCcchhhHHHHHHHHH---cCCcccc-------cCCCC---CCCCCCCccccccccccCC----CCCCC
Q 002824 699 VRSGDTIVDFCCGANDFSCMMKVKLEQ---MGKSCSF-------RNYDL---IQPKNDFSFEKRDWMTVRP----EELPD 761 (876)
Q Consensus 699 ~~~~d~~vd~~cg~~~f~~l~~~~~~~---~~~~~~~-------kn~d~---~~~~~~~~f~~~~w~~~~~----~~l~~ 761 (876)
+.+|+.|+|++||...+..++..+... +|.+.+- +|... ..-.+...|...|+.+..+ ..++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 457889999999999999988877421 1111110 12222 1112345666777766532 23555
Q ss_pred CCceeeecCCCcchhh-----------------hhHHHHHHhhhh-cCCc-EEEEecCcc
Q 002824 762 GSQLIMGLNPPFGVKA-----------------SLANKFISQALK-FKPK-LIVLIVPQE 802 (876)
Q Consensus 762 g~~li~glnppfg~~~-----------------~~a~kfi~~~~~-f~p~-~~~li~p~~ 802 (876)
++.=++-.||||.... ..-..|+..+.. .+|. .++++.|++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 173 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ 173 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence 5543334499998652 113466666543 3443 445566654
No 150
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=75.30 E-value=1.5 Score=37.15 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=20.8
Q ss_pred cCcCCccccccccceeecc--ccccccccccCC
Q 002824 347 VCQQSEDMNVEDLQLAICR--RCPKAYHRKCLP 377 (876)
Q Consensus 347 ~C~~sedk~~~~~qLi~C~--RCPkAYH~kCLP 377 (876)
.|+...+ .+.|+.|. +|..|||..|+.
T Consensus 14 ~C~~~~~----~g~mI~CD~~~C~~W~H~~Cvg 42 (68)
T 2rsd_A 14 ICSSTMV----NDSMIQCEDQRCQVWQHLNCVL 42 (68)
T ss_dssp TTCCCSC----CSCEEECSCTTTCEEEETTTSC
T ss_pred ECCCCcC----CCCEEEECCCCCCCeEchhhCC
Confidence 4766432 35799998 799999999983
No 151
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=75.18 E-value=1.4 Score=35.33 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=22.2
Q ss_pred cCcCCccccccccceeeccccccccccccCCC
Q 002824 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 347 ~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
.|++..+ ++.|+.|..|..+||..|+..
T Consensus 8 ~C~~~~~----~~~MI~Cd~C~~W~H~~Cvgi 35 (52)
T 3o7a_A 8 FCMKPFA----GRPMIECNECHTWIHLSCAKI 35 (52)
T ss_dssp TTCCBCT----TCCEEECTTTCCEEETTTTTC
T ss_pred EeCCcCC----CCCEEEcCCCCccccccccCC
Confidence 4666443 458999999999999999854
No 152
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=74.91 E-value=0.91 Score=40.54 Aligned_cols=32 Identities=25% Similarity=0.665 Sum_probs=24.3
Q ss_pred CCCccccccCC--CCceeec-Cccccccccccccc
Q 002824 214 NYFAVCAICDD--GGDVTFC-DGRCLRSFHATITA 245 (876)
Q Consensus 214 ~~d~VCaICe~--gGeLL~C-dG~C~RsFH~~Cl~ 245 (876)
.+...|.+|.+ .|.-|.| .+.|.++||+.|.-
T Consensus 15 R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 15 RWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHH
T ss_pred HhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHH
Confidence 45678999975 3665555 67899999999853
No 153
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=74.73 E-value=6.3 Score=37.95 Aligned_cols=44 Identities=7% Similarity=0.197 Sum_probs=37.2
Q ss_pred ccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 677 SFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 677 s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+|++++.+..+..+++.|. +.+|++|+|+.||...+...+-+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~ 98 (210)
T 3lbf_A 55 GQGQTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL 98 (210)
T ss_dssp TTSCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEeCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh
Confidence 36888889988888888875 479999999999999998887665
No 154
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=74.55 E-value=0.57 Score=44.77 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHHHHhhcccc---ccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC------CC------CCccccccccc
Q 002824 689 KEIVDRLHWYV---RSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP------KN------DFSFEKRDWMT 753 (876)
Q Consensus 689 ~~i~~~l~~~~---~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~------~~------~~~f~~~~w~~ 753 (876)
+.+++.+.=++ .+|.+|+|++||...++..+.+.. ..+.+--.|+-+. +| ...|...|+..
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 90 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC----PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE 90 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC----TTEEEEEEECC-------------------CCHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh
Confidence 44444443333 688999999999999999988773 2223333333221 11 45666677665
Q ss_pred cCCC--CCCCCCceeeecCCCcchhh
Q 002824 754 VRPE--ELPDGSQLIMGLNPPFGVKA 777 (876)
Q Consensus 754 ~~~~--~l~~g~~li~glnppfg~~~ 777 (876)
.-+. .....=-+|+. ||||....
T Consensus 91 ~~~~~~~~~~~fD~i~~-npp~~~~~ 115 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVS-NPPYIPTG 115 (215)
T ss_dssp HHHHHHHTTCCBSEEEE-CCCCCC--
T ss_pred hhhhhhhccCcccEEEE-CCCCCCCc
Confidence 2111 01122235555 99996543
No 155
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=74.32 E-value=0.85 Score=45.87 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=25.4
Q ss_pred HHHHHHhhcccc--ccCCeEEeeccCcchhhHHHHHH
Q 002824 688 LKEIVDRLHWYV--RSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 688 l~~i~~~l~~~~--~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
..++++.+.-.+ ..+.+|+|++||+..|...+-++
T Consensus 36 a~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~ 72 (250)
T 1o9g_A 36 ATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLL 72 (250)
T ss_dssp HHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHH
Confidence 335666543333 35779999999999999988776
No 156
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=74.30 E-value=0.8 Score=44.94 Aligned_cols=88 Identities=9% Similarity=0.187 Sum_probs=47.6
Q ss_pred cCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------CCCCccccccccccCCCCCCCCCc-ee
Q 002824 701 SGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------KNDFSFEKRDWMTVRPEELPDGSQ-LI 766 (876)
Q Consensus 701 ~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~~~~~f~~~~w~~~~~~~l~~g~~-li 766 (876)
+|.+|+|++||.-.++..+-.+ |. ...--.|+-+. -++..|...|+.+.-+. +.++. +|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~----~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V 126 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR----YA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIV 126 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT----TC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhc----CC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEE
Confidence 7899999999999998854332 10 01111111110 02456777776664332 23332 45
Q ss_pred eecCCCcchhhhhHHHHHHhhhh---cCCcEEEEe
Q 002824 767 MGLNPPFGVKASLANKFISQALK---FKPKLIVLI 798 (876)
Q Consensus 767 ~glnppfg~~~~~a~kfi~~~~~---f~p~~~~li 798 (876)
+ +||||.. ....+++..+.. .+|.=+++|
T Consensus 127 ~-~~~p~~~--~~~~~~l~~l~~~~~L~pgG~l~i 158 (202)
T 2fpo_A 127 F-VDPPFRR--GLLEETINLLEDNGWLADEALIYV 158 (202)
T ss_dssp E-ECCSSST--TTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred E-ECCCCCC--CcHHHHHHHHHhcCccCCCcEEEE
Confidence 4 5999873 234455555554 567644433
No 157
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=73.54 E-value=3.4 Score=42.76 Aligned_cols=76 Identities=11% Similarity=0.025 Sum_probs=44.5
Q ss_pred hccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------CCCCCccccccccccCCCCCC
Q 002824 695 LHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------PKNDFSFEKRDWMTVRPEELP 760 (876)
Q Consensus 695 l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~~~~~~f~~~~w~~~~~~~l~ 760 (876)
+--++.+|++|+|++||...|+..+-++. .. ..-..|+.+ -.|...|...|..+..+
T Consensus 119 l~~~~~~~~~VLDlgcG~G~~~~~la~~~----~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---- 189 (278)
T 2frn_A 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYG----KA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---- 189 (278)
T ss_dssp HHHHCCTTCEEEETTCTTTTTHHHHHHHT----CC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----
T ss_pred HHHhCCCCCEEEEecccCCHHHHHHHHhC----CC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----
Confidence 33347889999999999999999887652 21 111222221 12445566666655544
Q ss_pred CCCceeeecCCCcchhhhh
Q 002824 761 DGSQLIMGLNPPFGVKASL 779 (876)
Q Consensus 761 ~g~~li~glnppfg~~~~~ 779 (876)
.++.=++-+|||++....+
T Consensus 190 ~~~fD~Vi~~~p~~~~~~l 208 (278)
T 2frn_A 190 ENIADRILMGYVVRTHEFI 208 (278)
T ss_dssp CSCEEEEEECCCSSGGGGH
T ss_pred cCCccEEEECCchhHHHHH
Confidence 2222233348998764433
No 158
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=73.39 E-value=4.9 Score=39.33 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=42.6
Q ss_pred ccccccccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 669 FLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 669 ~l~g~ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
+.....+..+|.+.+.+.-...+++.|.-.+.+|+.|+|+.||...+...|-+.+
T Consensus 48 y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~ 102 (227)
T 2pbf_A 48 YIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKM 102 (227)
T ss_dssp TSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHT
T ss_pred CCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHh
Confidence 3344445567788888887777778776678899999999999999888887653
No 159
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=72.41 E-value=6.6 Score=44.51 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=54.3
Q ss_pred HHHhhCCCChhhhhh--cCChhhhhhHHHhhhcccccccccccccccccc---CcccchhhhHHHHHHhhccccccCCeE
Q 002824 631 LEMLDGGCDIEDAKA--VCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSF---GRHFTKVEKLKEIVDRLHWYVRSGDTI 705 (876)
Q Consensus 631 l~~l~~g~~~~~aka--~c~p~~l~q~~~~~~kl~~~l~p~l~g~ry~s~---grhft~~ekl~~i~~~l~~~~~~~d~~ 705 (876)
+..++.|.. .-++. .|.++.+.+|+.+-=..-|-=+-.|-+ |.+| .--.|.++.+.+|++++. +.+|++|
T Consensus 103 ~~~~~~g~~-~~~~~~~~~~~~~~~~Il~~~Y~r~V~~~~~L~~--Ye~Fs~~vYGEt~~~~i~~il~~l~--l~~gd~V 177 (438)
T 3uwp_A 103 IHQLWKGTT-QPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNN--YEPFSPEVYGETSFDLVAQMIDEIK--MTDDDLF 177 (438)
T ss_dssp HHHHHHSSS-CCCCCSBCCCHHHHHHHHHHHHHHHCSCGGGSCC--CSSSCGGGGGGTHHHHHHHHHHHHC--CCTTCEE
T ss_pred HHHhhcccc-CcccccCCCCHHHHHHHHHHHHhhcCCCHHHhcC--cccCCCcccCCCCHHHHHHHHHhcC--CCCCCEE
Confidence 444555533 22222 477888888887731111110122222 4322 223477889999999884 7899999
Q ss_pred EeeccCcchhhHHHHHH
Q 002824 706 VDFCCGANDFSCMMKVK 722 (876)
Q Consensus 706 vd~~cg~~~f~~l~~~~ 722 (876)
+|++||...+...+-..
T Consensus 178 LDLGCGtG~l~l~lA~~ 194 (438)
T 3uwp_A 178 VDLGSGVGQVVLQVAAA 194 (438)
T ss_dssp EEESCTTSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 99999999999877653
No 160
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=71.91 E-value=3.5 Score=39.16 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=32.0
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
..||.++.+++. ++.+|++|+|++||.-.++..+-+++
T Consensus 7 ~~kl~~l~~~~~-~~~~~~~vLDlGcG~G~~~~~la~~~ 44 (196)
T 2nyu_A 7 AFKLLEVNERHQ-ILRPGLRVLDCGAAPGAWSQVAVQKV 44 (196)
T ss_dssp HHHHHHHHHHHC-CCCTTCEEEEETCCSCHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 357888888775 47899999999999999999988774
No 161
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=71.06 E-value=2.1 Score=45.97 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=31.2
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
..||.||.+|. ++.+|.+|||++||--.|++..-+
T Consensus 76 AfKL~ei~eK~--~Lk~~~~VLDLGaAPGGWsQvAa~ 110 (282)
T 3gcz_A 76 SAKLRWMEERG--YVKPTGIVVDLGCGRGGWSYYAAS 110 (282)
T ss_dssp HHHHHHHHHTT--SCCCCEEEEEETCTTCHHHHHHHT
T ss_pred HHHHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHH
Confidence 46999999994 999999999999999999996543
No 162
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=71.04 E-value=6.3 Score=38.78 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=42.0
Q ss_pred cccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHH
Q 002824 676 TSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLE 724 (876)
Q Consensus 676 ~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~ 724 (876)
..+|++++.+.-...+++.|.-++.+|+.|+|+.||.-.+...+-+.+.
T Consensus 59 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~ 107 (227)
T 1r18_A 59 IGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIK 107 (227)
T ss_dssp EETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred cCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcc
Confidence 3567888889888889998877789999999999999999998887654
No 163
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=70.39 E-value=4.2 Score=39.78 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=37.0
Q ss_pred cCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 678 FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 678 ~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.|++.+.++-+..+++.++ +.+|+.|+|+.||...++..+.+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~ 91 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEI 91 (231)
T ss_dssp TTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHH
Confidence 5778888888888998885 579999999999999999888765
No 164
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=69.78 E-value=0.55 Score=42.63 Aligned_cols=16 Identities=25% Similarity=0.860 Sum_probs=14.1
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..++
T Consensus 30 ~~CgH~fc~~Ci~~~~ 45 (133)
T 4ap4_A 30 TECGHVFCSQCLRDSL 45 (133)
T ss_dssp ETTCCEEEHHHHHHHH
T ss_pred cCCCChhhHHHHHHHH
Confidence 5799999999998775
No 165
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=68.28 E-value=3.7 Score=41.13 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.6
Q ss_pred cCCeEEeeccCcchhhHHHHHHH
Q 002824 701 SGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 701 ~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
+|..|+|++||+..++..+-.+.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~ 87 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL 87 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHhC
Confidence 68899999999999988776654
No 166
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=67.62 E-value=1.9 Score=42.03 Aligned_cols=147 Identities=12% Similarity=0.187 Sum_probs=76.3
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------C----CCCcccc
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------K----NDFSFEK 748 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~----~~~~f~~ 748 (876)
.+..+++.+.. .++.+|+|+.||...|...+.++ +....+--.|+.+. . .+..|..
T Consensus 17 ~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 90 (217)
T 3jwh_A 17 RMNGVVAALKQ--SNARRVIDLGCGQGNLLKILLKD----SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90 (217)
T ss_dssp HHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHHC----TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCHHHHHHHhh----CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence 44455555543 47889999999999999988764 22223333333221 0 1344544
Q ss_pred ccccccCCCCCCCC-CceeeecCCCcchhhhhHHHHHHhhhh-cCCcEEEEecCccccccccccccceeecccccccCcc
Q 002824 749 RDWMTVRPEELPDG-SQLIMGLNPPFGVKASLANKFISQALK-FKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKS 826 (876)
Q Consensus 749 ~~w~~~~~~~l~~g-~~li~glnppfg~~~~~a~kfi~~~~~-f~p~~~~li~p~~~~~~~~~~~y~l~~~d~~~l~g~~ 826 (876)
.|..... .+.+ =-+|+..+.-..+......+|+..+.. .+|.-+++++|.. .|+..|..- ..
T Consensus 91 ~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~--------~~~~~~~~~---~~-- 154 (217)
T 3jwh_A 91 GALTYQD---KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI--------EYNVKFANL---PA-- 154 (217)
T ss_dssp CCTTSCC---GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH--------HHHHHTC---------
T ss_pred CCccccc---ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc--------ccchhhccc---cc--
Confidence 4432111 1111 235554333222222223455555543 4888888888762 244444211 10
Q ss_pred cccCCccccCcccccccccCCCceeeeecchhhHHHHHHHhhcC
Q 002824 827 FYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRG 870 (876)
Q Consensus 827 fy~pg~~d~~~~~~~~~n~~~p~~~lws~~d~~~~~~~~a~~~~ 870 (876)
+. ...+...+.|++.++.++=..+++++|
T Consensus 155 ----~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~G 183 (217)
T 3jwh_A 155 ----GK-----------LRHKDHRFEWTRSQFQNWANKITERFA 183 (217)
T ss_dssp ----------------------CCSCBCHHHHHHHHHHHHHHSS
T ss_pred ----cc-----------ccccccccccCHHHHHHHHHHHHHHcC
Confidence 11 011234456899999888889999887
No 167
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=67.59 E-value=2.7 Score=44.96 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=31.5
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
.+||.||.+| .++.+|.+|||++||--.|++..-+
T Consensus 60 A~KL~ei~ek--~~l~~~~~VLDLGaAPGGWSQvAa~ 94 (277)
T 3evf_A 60 TAKLRWFHER--GYVKLEGRVIDLGCGRGGWCYYAAA 94 (277)
T ss_dssp HHHHHHHHHT--TSSCCCEEEEEETCTTCHHHHHHHT
T ss_pred HHHHHHHHHh--CCCCCCCEEEEecCCCCHHHHHHHH
Confidence 5799999999 6899999999999999999996544
No 168
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=67.58 E-value=2.9 Score=44.42 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=32.7
Q ss_pred hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 684 KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 684 ~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
...||.+|.++ -++.+|.+|||++||.-.|+..+-++
T Consensus 67 ~a~KL~~i~~~--~~~~~g~~VLDlGcG~G~~s~~la~~ 103 (305)
T 2p41_A 67 GSAKLRWFVER--NLVTPEGKVVDLGCGRGGWSYYCGGL 103 (305)
T ss_dssp HHHHHHHHHHT--TSSCCCEEEEEETCTTSHHHHHHHTS
T ss_pred HHHHHHHHHHc--CCCCCCCEEEEEcCCCCHHHHHHHhc
Confidence 45699999999 46789999999999999999998776
No 169
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=67.56 E-value=3.1 Score=32.38 Aligned_cols=16 Identities=44% Similarity=0.968 Sum_probs=14.1
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..|+
T Consensus 25 ~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 25 PRCGHGFHAECVDMWL 40 (55)
T ss_dssp SSSCCEECTTHHHHTT
T ss_pred CCCCCcccHHHHHHHH
Confidence 3699999999998886
No 170
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=67.53 E-value=1.2 Score=38.30 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=22.6
Q ss_pred cCcCCccccccccceeeccccccccccccCCC
Q 002824 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 347 ~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
.|++..+ .+..|+.|..|..+||..|+..
T Consensus 14 iC~~~~~---~~~~MI~Cd~C~~WfH~~Cvg~ 42 (75)
T 3kqi_A 14 VCRLPYD---VTRFMIECDACKDWFHGSCVGV 42 (75)
T ss_dssp TTTEECC---TTSCEEECTTTCCEEEHHHHTC
T ss_pred ECCCcCC---CCCCEEEcCCCCCCEecccccc
Confidence 6776543 2458999999999999999843
No 171
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=67.18 E-value=1.2 Score=43.51 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=55.6
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------C-CCCcccccccc
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------K-NDFSFEKRDWM 752 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~-~~~~f~~~~w~ 752 (876)
.+.+++.|..+ .+|+.|+|++||...|+..+-.+ |. ...--.|+-+. . ++..|...|..
T Consensus 41 ~~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~~~~~----~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~ 114 (201)
T 2ift_A 41 KETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSR----QA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL 114 (201)
T ss_dssp HHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHT----TC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred HHHHHHHHHHh-cCCCeEEEcCCccCHHHHHHHHc----cC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHH
Confidence 33444444332 37899999999999998864333 11 11111222110 0 34566666666
Q ss_pred ccCCCCCCCCC--ceeeecCCCcchhhhhHHHHHHhhhh---cCCc-EEEEecCccc
Q 002824 753 TVRPEELPDGS--QLIMGLNPPFGVKASLANKFISQALK---FKPK-LIVLIVPQET 803 (876)
Q Consensus 753 ~~~~~~l~~g~--~li~glnppfg~~~~~a~kfi~~~~~---f~p~-~~~li~p~~~ 803 (876)
+..+. ++.++ -+|+ +||||.. ....+++..+.+ .+|. ++++..++.+
T Consensus 115 ~~~~~-~~~~~~fD~I~-~~~~~~~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 115 DFLKQ-PQNQPHFDVVF-LDPPFHF--NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp HHTTS-CCSSCCEEEEE-ECCCSSS--CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred HHHHh-hccCCCCCEEE-ECCCCCC--ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 54332 33444 3555 5999862 234455666544 5665 3344444443
No 172
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=66.85 E-value=3.3 Score=43.17 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=31.8
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+||.+|.++ -++.+|++|||++||.-.|+..+-++
T Consensus 60 a~KL~~i~~~--~~~~~g~~VLDlGcGtG~~s~~la~~ 95 (265)
T 2oxt_A 60 TAKLAWMEER--GYVELTGRVVDLGCGRGGWSYYAASR 95 (265)
T ss_dssp HHHHHHHHHH--TSCCCCEEEEEESCTTSHHHHHHHTS
T ss_pred HHHHHHHHHc--CCCCCCCEEEEeCcCCCHHHHHHHHc
Confidence 4789999998 56789999999999999999988766
No 173
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=66.35 E-value=3.5 Score=43.64 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.5
Q ss_pred hhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 694 RLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 694 ~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
|+.-++.+|++|+|++||...|+-.+-++
T Consensus 118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~ 146 (278)
T 3k6r_A 118 RMAKVAKPDELVVDMFAGIGHLSLPIAVY 146 (278)
T ss_dssp HHHHHCCTTCEEEETTCTTTTTTHHHHHH
T ss_pred HHHHhcCCCCEEEEecCcCcHHHHHHHHh
Confidence 45556899999999999999998766443
No 174
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=65.71 E-value=2.1 Score=38.15 Aligned_cols=32 Identities=28% Similarity=0.719 Sum_probs=25.6
Q ss_pred ccccccccCCCCCCCCCceeccCCCccCCCCccccccc
Q 002824 278 QCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSK 315 (876)
Q Consensus 278 qCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~ 315 (876)
.|.+|++.+ .+--++|....|.+.||+.|...
T Consensus 19 ~C~iC~~~~------~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 19 TCYLCKQKG------VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CBTTTTBCC------SSCEEECSCTTTCCEEEHHHHHH
T ss_pred CCcCCCCCC------CcEeEecCCCCCCCcCcHHHHHH
Confidence 588897542 24678999999999999999863
No 175
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=65.58 E-value=4.8 Score=43.96 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=58.5
Q ss_pred HHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC----------------CCCCcccccccccc
Q 002824 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP----------------KNDFSFEKRDWMTV 754 (876)
Q Consensus 691 i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~----------------~~~~~f~~~~w~~~ 754 (876)
+++.|.. .++.+|+|+.||...|+..+.++. ..+..--.|+.+. .....|...|.+.
T Consensus 214 ll~~l~~--~~~~~VLDlGcG~G~~s~~la~~~----p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~- 286 (375)
T 4dcm_A 214 FMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKN----PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS- 286 (375)
T ss_dssp HHHTCCC--SCCSEEEEETCTTCHHHHHHHHHC----TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred HHHhCcc--cCCCeEEEEeCcchHHHHHHHHHC----CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence 4444432 456899999999999999887662 1122222222211 1134556666554
Q ss_pred CCCCCCCCCceeeecCCCcch----hhhhHHHHHHhhhh-cCCcEEEEec
Q 002824 755 RPEELPDGSQLIMGLNPPFGV----KASLANKFISQALK-FKPKLIVLIV 799 (876)
Q Consensus 755 ~~~~l~~g~~li~glnppfg~----~~~~a~kfi~~~~~-f~p~~~~li~ 799 (876)
.++.++.=++-.||||.. ...++.+|+..+.. .+|.=+++|+
T Consensus 287 ---~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 287 ---GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp ---TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 345555444455999973 45677789998886 5776555554
No 176
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=65.44 E-value=2.8 Score=39.27 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=47.1
Q ss_pred chhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------CCCCCcccc
Q 002824 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------PKNDFSFEK 748 (876)
Q Consensus 683 t~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~~~~~~f~~ 748 (876)
|...-+..+++.|..+ .+|++|+|+.||...++..+-++ + .+..--.|+-+ -.++..|..
T Consensus 27 ~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 100 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSR----G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100 (187)
T ss_dssp CCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEE
Confidence 3334444555555332 57899999999999998865442 2 12222233322 123466777
Q ss_pred ccccccCCCCCC--CCC-ceeeecCCCcc
Q 002824 749 RDWMTVRPEELP--DGS-QLIMGLNPPFG 774 (876)
Q Consensus 749 ~~w~~~~~~~l~--~g~-~li~glnppfg 774 (876)
.|+.+..+. ++ .++ -+|+ +||||.
T Consensus 101 ~d~~~~~~~-~~~~~~~fD~i~-~~~~~~ 127 (187)
T 2fhp_A 101 MDANRALEQ-FYEEKLQFDLVL-LDPPYA 127 (187)
T ss_dssp SCHHHHHHH-HHHTTCCEEEEE-ECCCGG
T ss_pred CcHHHHHHH-HHhcCCCCCEEE-ECCCCC
Confidence 777764321 11 233 3555 599987
No 177
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=62.14 E-value=24 Score=37.56 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=63.6
Q ss_pred cccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC---------CCCC
Q 002824 674 RYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP---------KNDF 744 (876)
Q Consensus 674 ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~---------~~~~ 744 (876)
+|.|=|-+ ||.++++.+..-+ +|.+|+|+-||.-.|+..|-++ |- ..---.|+-+. ..-.
T Consensus 64 ~yvsrg~~-----Kl~~~l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~----ga-~~V~aVDvs~~mL~~a~r~~~rv~ 132 (291)
T 3hp7_A 64 RYVSRGGL-----KLEKALAVFNLSV-EDMITIDIGASTGGFTDVMLQN----GA-KLVYAVDVGTNQLVWKLRQDDRVR 132 (291)
T ss_dssp CSSSTTHH-----HHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHT----TC-SEEEEECSSSSCSCHHHHTCTTEE
T ss_pred ccccchHH-----HHHHHHHhcCCCc-cccEEEecCCCccHHHHHHHhC----CC-CEEEEEECCHHHHHHHHHhCcccc
Confidence 57776643 8899998886533 6889999999999999877654 21 01112233221 1112
Q ss_pred ccccccccccCCCCCCCCC-ceeeecCCCcc-hhhhhHHHHHHhhhhcCCcEEEEecC
Q 002824 745 SFEKRDWMTVRPEELPDGS-QLIMGLNPPFG-VKASLANKFISQALKFKPKLIVLIVP 800 (876)
Q Consensus 745 ~f~~~~w~~~~~~~l~~g~-~li~glnppfg-~~~~~a~kfi~~~~~f~p~~~~li~p 800 (876)
.++..|--.+++++||.++ -+|.. |=-|- +...|++ +..+|.-.=+|++||-|
T Consensus 133 ~~~~~ni~~l~~~~l~~~~fD~v~~-d~sf~sl~~vL~e--~~rvLkpGG~lv~lvkP 187 (291)
T 3hp7_A 133 SMEQYNFRYAEPVDFTEGLPSFASI-DVSFISLNLILPA--LAKILVDGGQVVALVKP 187 (291)
T ss_dssp EECSCCGGGCCGGGCTTCCCSEEEE-CCSSSCGGGTHHH--HHHHSCTTCEEEEEECG
T ss_pred eecccCceecchhhCCCCCCCEEEE-EeeHhhHHHHHHH--HHHHcCcCCEEEEEECc
Confidence 3455555556667777551 23321 22222 2333333 55566544467777655
No 178
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.23 E-value=4.1 Score=34.92 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=17.7
Q ss_pred CceeccCCCccC-CCCccccccccC
Q 002824 294 QEVFPCVSATCG-QFYHPECVSKLL 317 (876)
Q Consensus 294 ~eV~kCsv~~CG-kfYH~~CL~~~~ 317 (876)
+.++.|..-.|. ..||..||....
T Consensus 17 g~MI~CD~cdC~~~WfH~~Cvgl~~ 41 (70)
T 1x4i_A 17 GEMVGCDNQDCPIEWFHYGCVGLTE 41 (70)
T ss_dssp SSEECCSCTTCSCCCEEHHHHTCSS
T ss_pred CCEeEeCCCCCCccCCcccccccCc
Confidence 589999443453 899999998543
No 179
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=60.50 E-value=5 Score=43.27 Aligned_cols=83 Identities=14% Similarity=0.286 Sum_probs=50.7
Q ss_pred eEEeeccCcchhhHHHHHHHHHcCC--cccc-------------cCCCCCCCCCCCccccccccccCCCCCCC-CCceee
Q 002824 704 TIVDFCCGANDFSCMMKVKLEQMGK--SCSF-------------RNYDLIQPKNDFSFEKRDWMTVRPEELPD-GSQLIM 767 (876)
Q Consensus 704 ~~vd~~cg~~~f~~l~~~~~~~~~~--~~~~-------------kn~d~~~~~~~~~f~~~~w~~~~~~~l~~-g~~li~ 767 (876)
+|+|++||...|+.-+... |. .|-+ .||. + ..+...|-.++.+++++. .--+|+
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~----G~~~~~v~~~E~d~~a~~~~~~N~~-----~-~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRES----CIPAQVVAAIDVNTVANEVYKYNFP-----H-TQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEETCTTCHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred eEEEeCcCccHHHHHHHHC----CCCceEEEEEeCCHHHHHHHHHhcc-----c-cccccCCHHHccHhHcCcCCcCEEE
Confidence 6999999999999887654 42 2211 2331 1 123445666666666653 223566
Q ss_pred ecCCC---cch----------hhhhHHHHHHhhhhcC--CcEEEE
Q 002824 768 GLNPP---FGV----------KASLANKFISQALKFK--PKLIVL 797 (876)
Q Consensus 768 glnpp---fg~----------~~~~a~kfi~~~~~f~--p~~~~l 797 (876)
| .|| |.. ++.|--.|++-+.+.+ |+++++
T Consensus 74 ~-gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ 117 (343)
T 1g55_A 74 M-SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILL 117 (343)
T ss_dssp E-CCC------------------CHHHHHHHHGGGCSSCCSEEEE
T ss_pred E-cCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEE
Confidence 6 676 643 3346667888888999 998877
No 180
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=60.27 E-value=10 Score=36.59 Aligned_cols=45 Identities=9% Similarity=0.319 Sum_probs=37.8
Q ss_pred ccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 677 SFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 677 s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
..|++++.++-+..+++.++ +.+|++|+|+.||...+...+-+.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 99 (215)
T 2yxe_A 55 GYGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIV 99 (215)
T ss_dssp ETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCcEeCcHHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHh
Confidence 35677788888888888885 6799999999999999998887765
No 181
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=59.93 E-value=3.4 Score=40.14 Aligned_cols=149 Identities=13% Similarity=0.212 Sum_probs=77.0
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC----------C--------CCCcc
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP----------K--------NDFSF 746 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~----------~--------~~~~f 746 (876)
+..+..|.+.|.. .++.+|+|+.||...|...|.++. ....+--.|+.+. . ....|
T Consensus 15 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (219)
T 3jwg_A 15 QQRLGTVVAVLKS--VNAKKVIDLGCGEGNLLSLLLKDK----SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88 (219)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHTST----TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEE
T ss_pred HHHHHHHHHHHhh--cCCCEEEEecCCCCHHHHHHHhcC----CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEE
Confidence 3455556665543 578899999999999998887642 2222223333211 0 03444
Q ss_pred ccccccccCCCCCCCC-CceeeecCCCcchhhhhHHHHHHhhh-hcCCcEEEEecCccccccccccccceeecccccccC
Q 002824 747 EKRDWMTVRPEELPDG-SQLIMGLNPPFGVKASLANKFISQAL-KFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSG 824 (876)
Q Consensus 747 ~~~~w~~~~~~~l~~g-~~li~glnppfg~~~~~a~kfi~~~~-~f~p~~~~li~p~~~~~~~~~~~y~l~~~d~~~l~g 824 (876)
...|+.... ++.+ =-+|+..+.-..+......+|+..+. ..+|.-+++++|.. .|+..|..- ..
T Consensus 89 ~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~--------~~~~~~~~~---~~ 154 (219)
T 3jwg_A 89 FQSSLVYRD---KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK--------EYNFHYGNL---FE 154 (219)
T ss_dssp EECCSSSCC---GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG--------GGGGCCCCT-----
T ss_pred EeCcccccc---cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch--------hhhhhhccc---Cc
Confidence 444442111 1111 22454433322222112234555544 34788888888762 244444221 11
Q ss_pred cccccCCccccCcccccccccCCCceeeeecchhhHHHHHHHhhcC
Q 002824 825 KSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRG 870 (876)
Q Consensus 825 ~~fy~pg~~d~~~~~~~~~n~~~p~~~lws~~d~~~~~~~~a~~~~ 870 (876)
+... -+-..+.|++.++.+.=..+++++|
T Consensus 155 ------~~~~-----------~~~~~~~~~~~~l~~~~~~l~~~~G 183 (219)
T 3jwg_A 155 ------GNLR-----------HRDHRFEWTRKEFQTWAVKVAEKYG 183 (219)
T ss_dssp ---------G-----------GGCCTTSBCHHHHHHHHHHHHHHHT
T ss_pred ------cccc-----------ccCceeeecHHHHHHHHHHHHHHCC
Confidence 1100 1223456888888888888998887
No 182
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=59.50 E-value=5.2 Score=41.97 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=31.4
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
..||.++.++ -++.+|.+|+|++||.-.|+..+-++
T Consensus 68 a~KL~~i~~~--~~~~~g~~VLDlGcGtG~~s~~la~~ 103 (276)
T 2wa2_A 68 TAKLAWIDER--GGVELKGTVVDLGCGRGSWSYYAASQ 103 (276)
T ss_dssp HHHHHHHHHT--TSCCCCEEEEEESCTTCHHHHHHHTS
T ss_pred HHHHHHHHHc--CCCCCCCEEEEeccCCCHHHHHHHHc
Confidence 4688999988 56789999999999999999988776
No 183
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=58.90 E-value=2.1 Score=48.93 Aligned_cols=29 Identities=28% Similarity=0.630 Sum_probs=23.1
Q ss_pred cCcCCccccccccceeeccccccccccccCCC
Q 002824 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 347 ~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
.|++..+ ..+.|++|..|..+||..|+.-
T Consensus 41 ~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl 69 (488)
T 3kv5_D 41 VCRQPYD---VNRFMIECDICKDWFHGSCVGV 69 (488)
T ss_dssp TTTEECC---TTSCEEEBTTTCCEEEHHHHTC
T ss_pred eCCCcCC---CCCCeEEccCCCCceeeeecCc
Confidence 7877543 2467999999999999999843
No 184
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=58.51 E-value=8.9 Score=42.09 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=54.4
Q ss_pred eEEeeccCcchhhHHHHHHHHHcCCcccc-------------cCCCCCCCCCCCccccccccccCCCCC-----C-CCCc
Q 002824 704 TIVDFCCGANDFSCMMKVKLEQMGKSCSF-------------RNYDLIQPKNDFSFEKRDWMTVRPEEL-----P-DGSQ 764 (876)
Q Consensus 704 ~~vd~~cg~~~f~~l~~~~~~~~~~~~~~-------------kn~d~~~~~~~~~f~~~~w~~~~~~~l-----~-~g~~ 764 (876)
+++|++||+-.++.-+... |-.+-+ .|+. .-.+...|..++.++++ + ..--
T Consensus 4 ~vidLFsG~GGlslG~~~a----G~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARA----GFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp EEEEETCTTSHHHHHHHHH----TCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred eEEEEccCcCHHHHHHHHC----CCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCee
Confidence 5899999999999877654 544421 1221 11233456666666655 2 2234
Q ss_pred eeeecCCC---cc---------hhhhhHHHHHHhhhhcCCcEEEE
Q 002824 765 LIMGLNPP---FG---------VKASLANKFISQALKFKPKLIVL 797 (876)
Q Consensus 765 li~glnpp---fg---------~~~~~a~kfi~~~~~f~p~~~~l 797 (876)
+|+| .|| |. .+..|...|+.-+-+++|+++|+
T Consensus 74 ~i~g-gpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ 117 (376)
T 3g7u_A 74 GIIG-GPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLA 117 (376)
T ss_dssp EEEE-CCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEe-cCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEE
Confidence 6666 565 53 35678888999999999999988
No 185
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=58.06 E-value=5 Score=40.12 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=54.3
Q ss_pred cccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------CCCCccccccccccCCCCCCCCC
Q 002824 697 WYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------KNDFSFEKRDWMTVRPEELPDGS 763 (876)
Q Consensus 697 ~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~~~~~f~~~~w~~~~~~~l~~g~ 763 (876)
+|-.++.+|+|+.||...+...|-++. ..+.+--.|+.++ -.+..|..-|-..+-+..++.|+
T Consensus 30 ~f~~~~~~vLDiGcG~G~~~~~lA~~~----p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~ 105 (218)
T 3dxy_A 30 LFGREAPVTLEIGFGMGASLVAMAKDR----PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNS 105 (218)
T ss_dssp HHSSCCCEEEEESCTTCHHHHHHHHHC----TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTC
T ss_pred HcCCCCCeEEEEeeeChHHHHHHHHHC----CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCC
Confidence 345588999999999999998887652 2233333344322 12366666665554333356665
Q ss_pred ceeeecC--CCcchhhhhHH-----HHHHhhhh-cCCcEEE
Q 002824 764 QLIMGLN--PPFGVKASLAN-----KFISQALK-FKPKLIV 796 (876)
Q Consensus 764 ~li~gln--ppfg~~~~~a~-----kfi~~~~~-f~p~~~~ 796 (876)
--.+-++ +|+........ .|+..+.. .+|.=++
T Consensus 106 ~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l 146 (218)
T 3dxy_A 106 LRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVF 146 (218)
T ss_dssp EEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEE
T ss_pred hheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEE
Confidence 4333344 66654443222 46666654 4555333
No 186
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=58.00 E-value=12 Score=36.93 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=37.5
Q ss_pred ccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 677 SFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 677 s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
..|.+.+.+.-...+++.++ +.+|++|+|+.||...+...+-+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~ 113 (235)
T 1jg1_A 69 PAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIV 113 (235)
T ss_dssp STTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHh
Confidence 45677778888888888885 6799999999999999988887764
No 187
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=57.93 E-value=3.6 Score=37.64 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.8
Q ss_pred ccccceeeccccccccccccCCCCc
Q 002824 356 VEDLQLAICRRCPKAYHRKCLPTEI 380 (876)
Q Consensus 356 ~~~~qLi~C~RCPkAYH~kCLP~gi 380 (876)
+.+..|+.|..|..+||..|+....
T Consensus 70 ~~~~~m~~C~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 70 DFEKKLMECCICNEIVHPGCLQMDG 94 (117)
T ss_dssp CGGGSCEEETTTCCEECGGGCCSCC
T ss_pred ccCcceEEeeecCCeEECCCCCCCc
Confidence 3456799999999999999997643
No 188
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=57.43 E-value=8.3 Score=41.64 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHHHHhhccccc-cCCeEEeeccCcchhhHHHHH
Q 002824 688 LKEIVDRLHWYVR-SGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 688 l~~i~~~l~~~~~-~~d~~vd~~cg~~~f~~l~~~ 721 (876)
.+.+++.+.-++. .|++|+|++||...|+-.+-+
T Consensus 199 ~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~ 233 (369)
T 3bt7_A 199 NIQMLEWALDVTKGSKGDLLELYCGNGNFSLALAR 233 (369)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGG
T ss_pred HHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHh
Confidence 3444444333333 378999999999999876643
No 189
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=57.24 E-value=7.4 Score=42.05 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=58.0
Q ss_pred ccCc-ccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------CC
Q 002824 677 SFGR-HFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------KN 742 (876)
Q Consensus 677 s~gr-hft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~~ 742 (876)
.|.. ++|...-...++-.......+|.+|+|++ |...++..+... |.....--+|+-+. -.
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~----~~~~~v~~vDi~~~~l~~a~~~~~~~g~~ 221 (373)
T 2qm3_A 147 EFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS----GLPKRIAVLDIDERLTKFIEKAANEIGYE 221 (373)
T ss_dssp GGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH----TCCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred hcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3555 33444433333322222334688999999 999999888654 22112222333211 01
Q ss_pred CCccccccccccCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhhc-CC
Q 002824 743 DFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKF-KP 792 (876)
Q Consensus 743 ~~~f~~~~w~~~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~f-~p 792 (876)
+..|...|+...-|.++...=-+|+ +||||+..+ ..+|+..++.. +|
T Consensus 222 ~v~~~~~D~~~~l~~~~~~~fD~Vi-~~~p~~~~~--~~~~l~~~~~~Lkp 269 (373)
T 2qm3_A 222 DIEIFTFDLRKPLPDYALHKFDTFI-TDPPETLEA--IRAFVGRGIATLKG 269 (373)
T ss_dssp CEEEECCCTTSCCCTTTSSCBSEEE-ECCCSSHHH--HHHHHHHHHHTBCS
T ss_pred CEEEEEChhhhhchhhccCCccEEE-ECCCCchHH--HHHHHHHHHHHccc
Confidence 3566666665511211111223555 599999876 37888888754 45
No 190
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=56.94 E-value=6.2 Score=42.68 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=32.7
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
-.||.||.++ -++.+|.+|||+|||-..|++.+-++
T Consensus 67 a~KL~ei~ek--~l~~~g~~vlDLGaaPGgWsqva~~~ 102 (300)
T 3eld_A 67 AAKIRWLHER--GYLRITGRVLDLGCGRGGWSYYAAAQ 102 (300)
T ss_dssp HHHHHHHHHH--TSCCCCEEEEEETCTTCHHHHHHHTS
T ss_pred HHHHHHHHHh--CCCCCCCEEEEcCCCCCHHHHHHHHh
Confidence 4699999999 57889999999999999999998875
No 191
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=55.92 E-value=6.5 Score=45.49 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.0
Q ss_pred cccceeeccccccccccccCCC
Q 002824 357 EDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 357 ~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
.+..++.|+.|..+||..|+.-
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi 75 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGL 75 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTC
T ss_pred cCCCEEECCCCCcCCCCcCCCC
Confidence 4568999999999999999854
No 192
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=55.07 E-value=9.3 Score=35.03 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=30.2
Q ss_pred chhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 683 t~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
|...-...+++.+..++.+|.+|+|+.||...++..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~ 62 (171)
T 1ws6_A 23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE 62 (171)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC
Confidence 3344555677777766668999999999999998877654
No 193
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.88 E-value=5 Score=34.95 Aligned_cols=38 Identities=24% Similarity=0.572 Sum_probs=22.6
Q ss_pred cccccccccCCCCCCCCCceeccCCCccCCCCccccccccC
Q 002824 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 277 HqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
..|.||......+ ..-+..|.-...+++||..|+..|+
T Consensus 16 ~~C~IC~~~~~~~---~~l~~pC~C~Gs~h~fH~~Cl~~Wl 53 (80)
T 2d8s_A 16 DICRICHCEGDDE---SPLITPCHCTGSLHFVHQACLQQWI 53 (80)
T ss_dssp CCCSSSCCCCCSS---SCEECSSSCCSSSCCEETTHHHHHH
T ss_pred CCCeEcCccccCC---CeeEeccccCCcCCeeCHHHHHHHH
Confidence 3577786443211 1223445323335999999999886
No 194
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=54.45 E-value=17 Score=39.16 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=54.5
Q ss_pred CeEEeeccCcchhhHHHHHHHHHcCCcccc-------------cCCCCCCCCCCCccccccccccCCCCCCCCCceeeec
Q 002824 703 DTIVDFCCGANDFSCMMKVKLEQMGKSCSF-------------RNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGL 769 (876)
Q Consensus 703 d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~-------------kn~d~~~~~~~~~f~~~~w~~~~~~~l~~g~~li~gl 769 (876)
=+|+|++||+-.++.-+.. .|-.+-+ .||.-.. ..|-.++.++++|.=+-|++|
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~----aG~~~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~~~~~~~D~l~~g- 78 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALES----CGAECVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNEKTIPDHDILCAG- 78 (327)
T ss_dssp CEEEEETCTTTHHHHHHHH----TTCEEEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCGGGSCCCSEEEEE-
T ss_pred CcEEEECCCcCHHHHHHHH----CCCeEEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCHhhCCCCCEEEEC-
Confidence 3699999999999887764 3655432 2332111 467777888888865544444
Q ss_pred CC--Ccc----------hhhhhHHHHHHhhhhcCCcEEEEe
Q 002824 770 NP--PFG----------VKASLANKFISQALKFKPKLIVLI 798 (876)
Q Consensus 770 np--pfg----------~~~~~a~kfi~~~~~f~p~~~~li 798 (876)
.| ||. .++.|--.|+.-+-+.+|+++++=
T Consensus 79 pPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~E 119 (327)
T 2c7p_A 79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFME 119 (327)
T ss_dssp CCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEe
Confidence 33 342 234577778888888999988773
No 195
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=53.95 E-value=12 Score=38.42 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=68.9
Q ss_pred ccchhh---hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------CCCC
Q 002824 681 HFTKVE---KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------PKND 743 (876)
Q Consensus 681 hft~~e---kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~~~~ 743 (876)
|.|.-| -|.++++..-.|+.+.++|+|+=||.|.++-.+... ...- .|--+|+-+ ..++
T Consensus 26 H~STReRLp~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~---~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~ 101 (200)
T 3fzg_A 26 HSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNE---NEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIK 101 (200)
T ss_dssp SHHHHTTGGGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCS---SCCC-EEEEECSCHHHHHHHHHHHHHSCCSSE
T ss_pred CCCHHHHhHhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhc---CCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcc
Confidence 555555 455666666777899999999999999998776211 1111 333333322 2233
Q ss_pred CccccccccccCCCCCCCCC-ceeeecCC-Ccc--hhhhhHHHHHHhhhhcCCcEEEEecCccccccccc----cc-cce
Q 002824 744 FSFEKRDWMTVRPEELPDGS-QLIMGLNP-PFG--VKASLANKFISQALKFKPKLIVLIVPQETRRLDQK----AS-YNL 814 (876)
Q Consensus 744 ~~f~~~~w~~~~~~~l~~g~-~li~glnp-pfg--~~~~~a~kfi~~~~~f~p~~~~li~p~~~~~~~~~----~~-y~l 814 (876)
+.| .|-++ ..|.|. -+||++|= |.= .+++++. |- -..+|.-+++..| |+.|-.. .. |.-
T Consensus 102 v~~--~d~~~----~~~~~~~DvVLa~k~LHlL~~~~~al~~--v~--~~L~pggvfISfp--tksl~Gr~~gm~~~Y~~ 169 (200)
T 3fzg_A 102 YRF--LNKES----DVYKGTYDVVFLLKMLPVLKQQDVNILD--FL--QLFHTQNFVISFP--IKSLSGKEKGMEENYQL 169 (200)
T ss_dssp EEE--ECCHH----HHTTSEEEEEEEETCHHHHHHTTCCHHH--HH--HTCEEEEEEEEEE--CCCCC--CTTCCCCHHH
T ss_pred EEE--ecccc----cCCCCCcChhhHhhHHHhhhhhHHHHHH--HH--HHhCCCCEEEEeC--hHHhcCCCcchhhhHHH
Confidence 344 33322 234444 68888764 221 1234441 22 2567888888888 4444332 22 887
Q ss_pred eeccc
Q 002824 815 IWEDN 819 (876)
Q Consensus 815 ~~~d~ 819 (876)
.|+..
T Consensus 170 ~~~~~ 174 (200)
T 3fzg_A 170 WFESF 174 (200)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87755
No 196
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=53.90 E-value=16 Score=35.81 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=39.2
Q ss_pred ccccccccccccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 665 YLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 665 ~l~p~l~g~ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
...|=+....|.. ...+|+.+-...++.+|. +.+|++|+|+.||...++..+-++
T Consensus 22 ~~~~g~~d~~f~~-~~~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~ 76 (204)
T 3njr_A 22 SQVPGRPESAFAH-DGQITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA 76 (204)
T ss_dssp CSSSCCCGGGSCC-SSCCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT
T ss_pred CCCCCCCHHHhhc-CCCCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc
Confidence 3444444555533 336788777777888876 578999999999999988776554
No 197
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=53.85 E-value=11 Score=34.82 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=58.7
Q ss_pred ccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-------------CCCCccc
Q 002824 681 HFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-------------KNDFSFE 747 (876)
Q Consensus 681 hft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-------------~~~~~f~ 747 (876)
..+..+-...+++.+. +.+|++|+|+.||...++..+.+ ..+.+--.|+.+. -.+..|.
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 88 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK------RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQII 88 (183)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT------TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 3456666667777774 46899999999999999887754 1122222222210 0235666
Q ss_pred cccccccCCCCCCCCC-ceeeecCCCcchhhhhHHHHHHhhhhcCCc-EEEEecC
Q 002824 748 KRDWMTVRPEELPDGS-QLIMGLNPPFGVKASLANKFISQALKFKPK-LIVLIVP 800 (876)
Q Consensus 748 ~~~w~~~~~~~l~~g~-~li~glnppfg~~~~~a~kfi~~~~~f~p~-~~~li~p 800 (876)
..|+.+. ++.++ -+|+. ++| .....++..+... |. .++++.+
T Consensus 89 ~~d~~~~----~~~~~~D~i~~-~~~-----~~~~~~l~~~~~~-~gG~l~~~~~ 132 (183)
T 2yxd_A 89 KGRAEDV----LDKLEFNKAFI-GGT-----KNIEKIIEILDKK-KINHIVANTI 132 (183)
T ss_dssp ESCHHHH----GGGCCCSEEEE-CSC-----SCHHHHHHHHHHT-TCCEEEEEES
T ss_pred ECCcccc----ccCCCCcEEEE-CCc-----ccHHHHHHHHhhC-CCCEEEEEec
Confidence 6777652 22222 35665 444 3446677777777 65 4444443
No 198
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=52.97 E-value=3.8 Score=42.52 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=58.0
Q ss_pred cccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC---------------------CCCCCccccccccccCCC
Q 002824 699 VRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ---------------------PKNDFSFEKRDWMTVRPE 757 (876)
Q Consensus 699 ~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~---------------------~~~~~~f~~~~w~~~~~~ 757 (876)
+.+|++|+|++||...++-.+-.+ | +..--.|+-+ -.|...|...|..+.-+
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~----g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~- 153 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL----G--LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP- 153 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT----T--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH-
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh----C--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH-
Confidence 457899999999999999888664 2 2333344443 01335666666655321
Q ss_pred CCCC--CCceeeecCCCcchhh--h-----------------hHHHHHHhhhhcCCcEEEEecCccccccc
Q 002824 758 ELPD--GSQLIMGLNPPFGVKA--S-----------------LANKFISQALKFKPKLIVLIVPQETRRLD 807 (876)
Q Consensus 758 ~l~~--g~~li~glnppfg~~~--~-----------------~a~kfi~~~~~f~p~~~~li~p~~~~~~~ 807 (876)
.++. ++-=++-+||||.... + ....++..|+..-.+.+|+--|.....+.
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~~vvvk~p~~~~~l~ 224 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKKRVVVKRPRLGEHLA 224 (258)
T ss_dssp HHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSSEEEEEEETTCCCGG
T ss_pred hhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCcEEEEEcCCCChhhh
Confidence 1221 2222344699997542 1 24456667777777777666665554444
No 199
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=52.10 E-value=21 Score=34.17 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=32.1
Q ss_pred chhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 683 t~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
|+.+-...++.+|. +.+|++|+|+.||...++..+-++
T Consensus 24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~ 61 (204)
T 3e05_A 24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNL 61 (204)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHH
Confidence 77777777888874 679999999999999998887765
No 200
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.41 E-value=3.9 Score=35.06 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=27.8
Q ss_pred eecccccccC-cccccccccCCCCCCCCCceeccCCCccCCCCccccccccCC
Q 002824 267 FLCQNCVYQE-HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLH 318 (876)
Q Consensus 267 W~C~eC~~gq-HqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~ 318 (876)
-.|.=|.... ..|.+|...... +..+.. ...||+.||..|+..++.
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~----~~~~~~--~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQ----EDCVVV--WGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCT----TTCCEE--EETTSCEEEHHHHHHHTT
T ss_pred CCCcccChhhhccCcccccccCC----CceEEE--eCCCCCccChHHHHHHHH
Confidence 3466666543 457777553221 112222 146999999999998863
No 201
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=51.16 E-value=15 Score=39.05 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=21.1
Q ss_pred cccCCeEEeeccCcchhhHHHHHHH
Q 002824 699 VRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 699 ~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
+++|+.|+|+|||...++..|-+.+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~ 124 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALL 124 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHh
Confidence 5789999999999999888776654
No 202
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=50.64 E-value=22 Score=38.86 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=58.5
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC----------CC--CCccccccccccC
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP----------KN--DFSFEKRDWMTVR 755 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~----------~~--~~~f~~~~w~~~~ 755 (876)
+..+.+.+.|...+|..|+|+.||...++..+.++ |. ..--.|+-+. .| ...|...|+.+..
T Consensus 220 l~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~----g~--~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM----GA--EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT----TC--EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS
T ss_pred HHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc----CC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc
Confidence 33344444455568999999999999999888764 21 2222222211 01 2456666665543
Q ss_pred CCCCCCCCc-eeeecCCCcchh----hhhHHHHHHhhhh-cCCcEEEEec
Q 002824 756 PEELPDGSQ-LIMGLNPPFGVK----ASLANKFISQALK-FKPKLIVLIV 799 (876)
Q Consensus 756 ~~~l~~g~~-li~glnppfg~~----~~~a~kfi~~~~~-f~p~~~~li~ 799 (876)
+. .++. +|+ .||||... ......|+..+.. .+|.=+++|+
T Consensus 294 ~~---~~~fD~Ii-~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 294 TE---EARFDIIV-TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp CT---TCCEEEEE-ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc---CCCeEEEE-ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 32 2333 555 59999862 2456677777664 3565444443
No 203
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=49.78 E-value=11 Score=38.85 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHhhc-cccccCCeEEeeccCcchhhHHHHHHHH
Q 002824 690 EIVDRLH-WYVRSGDTIVDFCCGANDFSCMMKVKLE 724 (876)
Q Consensus 690 ~i~~~l~-~~~~~~d~~vd~~cg~~~f~~l~~~~~~ 724 (876)
.|+..|- ..+++|++|+|++||...|+..+-+.+.
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~ 99 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIE 99 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhC
Confidence 3445553 6789999999999999999988877653
No 204
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=48.06 E-value=7.9 Score=38.11 Aligned_cols=86 Identities=22% Similarity=0.374 Sum_probs=49.3
Q ss_pred CCCccccccCCC--C-ceeecCcccccccccccccCccccccccCCcc--cc-cCCCCceecccccccC--c--cccccc
Q 002824 214 NYFAVCAICDDG--G-DVTFCDGRCLRSFHATITAGKNALCQSLGYTQ--AQ-IDAVPNFLCQNCVYQE--H--QCFACG 283 (876)
Q Consensus 214 ~~d~VCaICe~g--G-eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~--~e-v~~~~~W~C~eC~~gq--H--qCfiCg 283 (876)
+....|+.|... + .+|.-. .+.||..|..=. .|.. .|.. .. ....+..+|..|-... . .|..|+
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~-~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~ 76 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAM---DSYWHSRCLKCS--SCQA-QLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACG 76 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEET---TEEECGGGCBCT--TTCC-BHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTC
T ss_pred CCCCcCccCCCEeCCceeEEec---CcEecccCcccC--CCCc-ccccCCceEEEeCCccccccccccccccCCccccCC
Confidence 345789999874 2 345544 478999886411 1311 1111 00 1125789999996432 2 699999
Q ss_pred ccCCCCCCCCCceeccCCCccCCCCccccc
Q 002824 284 MLGSSDKSSSQEVFPCVSATCGQFYHPECV 313 (876)
Q Consensus 284 klGssd~ss~~eV~kCsv~~CGkfYH~~CL 313 (876)
+.-.. ...++. .-++.||+.|.
T Consensus 77 ~~I~~----~e~~i~----a~~~~~H~~CF 98 (188)
T 1rut_X 77 QSIPA----SELVMR----AQGNVYHLKCF 98 (188)
T ss_dssp CEECT----TSEEEE----ETTEEECGGGC
T ss_pred Ccccc----CcEEEE----cCCCEEeCCCC
Confidence 76431 122332 34788998875
No 205
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=47.34 E-value=17 Score=35.90 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=34.6
Q ss_pred cccccccc----cccccCcccchhhhHHH-HHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 666 LAPFLHGM----RYTSFGRHFTKVEKLKE-IVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 666 l~p~l~g~----ry~s~grhft~~ekl~~-i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
+.|-+||. .|..+...- .++.. +...|...+.+|++|+|+.||...++..+.++.
T Consensus 20 ~~~~~Y~~~~~~~y~~~~~~~---~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~ 79 (210)
T 1nt2_A 20 KYGSHYGEKVFDGYREWVPWR---SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV 79 (210)
T ss_dssp SCCCSSSCCEETTEEECCGGG---CHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHT
T ss_pred CCccccchhhhhhhhhcChhH---HHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHc
Confidence 55666776 444332221 23322 233333357899999999999999988877663
No 206
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=46.79 E-value=11 Score=33.68 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=14.2
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..|+
T Consensus 59 ~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 59 TKCSHAFHLLCLLAMY 74 (114)
T ss_dssp SSSCCEECHHHHHHHH
T ss_pred CCCCCcccHHHHHHHH
Confidence 5799999999998875
No 207
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=46.65 E-value=40 Score=43.16 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=68.5
Q ss_pred CCCccc-eeeeEEEEEee-ccCCcceEEEEecCCceeEcCCCCchHHHHH----HHHhhhhheehhhccCcccchhHHHH
Q 002824 57 GDGPWN-FNEQVIAWKFE-LSYAQPEIWVLSKQNNWIMLQSPKKSFKNIV----RTILITVHWLYCVKQNPEASRKYIRE 130 (876)
Q Consensus 57 d~Gl~~-v~~~v~aWr~~-l~~~~p~isvls~~~~Wi~L~kPrk~ye~~i----rtvlitv~~LhfvkknP~~s~ksl~~ 130 (876)
++|+-. -.-.|..|-.+ +++..=-+--++.+-.|-.|.+|.+-|.-.+ +++.++.--+-||+.+|+++=..|-+
T Consensus 166 ~~g~~~~~l~~i~ew~i~~f~g~~~~~i~~~t~~a~y~l~~ps~~yap~~~~~~~~~~~~~~vi~~l~~~~~~~~~d~~~ 245 (1330)
T 3av4_A 166 EGGINGKNLGPINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNNPDAVYEDLIN 245 (1330)
T ss_dssp TTCEEEEEESCCCEEEEECSSSSSCCEEEEECSSCEEEECSBCTTTHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred CCCcchhhccchhhheeeeecCcceEEEEEecchheeeccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 457653 45689999999 9886655555688999999999999984433 44444444566667888888666666
Q ss_pred HHHhhcccccc---cCCcchhhhhhHHhHHHHh
Q 002824 131 QMLKVFCSYEV---EPSENDLLDHMPISREAAE 160 (876)
Q Consensus 131 ~L~K~f~~fdi---~Ps~~DL~~h~~Lik~~vk 160 (876)
.|+.....=.| .--++.|+.|=-+|=++++
T Consensus 246 ~~~~~~~~~~~~~~~~~e~~l~~h~q~i~~q~~ 278 (1330)
T 3av4_A 246 KIETTVPPSTINVNRFTEDSLLRHAQFVVSQVE 278 (1330)
T ss_dssp HHHHCCCCTTSSCSCCCHHHHHHTHHHHHHHHH
T ss_pred HHhccCCcccccchhhhHHHHhhhhhhHHhHHh
Confidence 66652211100 1135678888777754443
No 208
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=46.53 E-value=8.3 Score=40.05 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=26.3
Q ss_pred CcccccccccCCCCCCCCCceeccCCCccCCCCccccccccC
Q 002824 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 276 qHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
...|.+|..... .-.+|. +|+..||..|+..+.
T Consensus 180 i~~C~iC~~iv~-------~g~~C~--~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCE--TCGIRMHLPCVAKYF 212 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECS--SSCCEECHHHHHHHT
T ss_pred CCcCcchhhHHh-------CCcccC--ccChHHHHHHHHHHH
Confidence 567999997753 237894 599999999998875
No 209
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=46.49 E-value=9.8 Score=38.17 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=23.4
Q ss_pred hccccccCCeEEeeccCcchhhHHHHHH
Q 002824 695 LHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 695 l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+.++.++|++|+|+.||...+...|-++
T Consensus 18 ~~~~~~~~~~vLDiGCG~G~~~~~la~~ 45 (225)
T 3p2e_A 18 TEIIGQFDRVHIDLGTGDGRNIYKLAIN 45 (225)
T ss_dssp HHHHTTCSEEEEEETCTTSHHHHHHHHT
T ss_pred HHHhCCCCCEEEEEeccCcHHHHHHHHh
Confidence 3456789999999999999999888643
No 210
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=45.74 E-value=12 Score=46.01 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=25.1
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+..+++.|.- .+|.+|+|+.||...+...|.+.
T Consensus 709 Rle~LLelL~~--~~g~rVLDVGCGTG~lai~LAr~ 742 (950)
T 3htx_A 709 RVEYALKHIRE--SSASTLVDFGCGSGSLLDSLLDY 742 (950)
T ss_dssp HHHHHHHHHHH--SCCSEEEEETCSSSHHHHHHTSS
T ss_pred HHHHHHHHhcc--cCCCEEEEECCCCCHHHHHHHHh
Confidence 55555555543 38999999999999988877554
No 211
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.50 E-value=9.6 Score=36.80 Aligned_cols=83 Identities=19% Similarity=0.360 Sum_probs=49.0
Q ss_pred CccccccCCC---CceeecCcccccccccccccCcccccc-ccCCcccccCCCCceeccccccc--CcccccccccCCCC
Q 002824 216 FAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQ-SLGYTQAQIDAVPNFLCQNCVYQ--EHQCFACGMLGSSD 289 (876)
Q Consensus 216 d~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~-sLGlT~~ev~~~~~W~C~eC~~g--qHqCfiCgklGssd 289 (876)
...|+.|+.. +.+|.-. .+.||..|..=. .|. .|+.. .....+..+|..|-.. ...|..|++.-.
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~~L~~~--~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~-- 76 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKAL---DRHWHSKCLKCS--DCHVPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIP-- 76 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECS---SCEECTTTSBCT--TTCCBCCSC--CEESSSCEECHHHHHHHHSCBCTTTCCBCC--
T ss_pred CCccccCCCccCCcEEEEEC---CcEEccccCccC--CCCCcCCCC--CcccCCeeeecccccccccccccccccccC--
Confidence 4689999875 2345555 478999886411 131 13221 1223678999999654 367999987542
Q ss_pred CCCCCceeccCCCccCCCCccccc
Q 002824 290 KSSSQEVFPCVSATCGQFYHPECV 313 (876)
Q Consensus 290 ~ss~~eV~kCsv~~CGkfYH~~CL 313 (876)
+.+++. ..-++.||+.|.
T Consensus 77 ---~~~~v~---~a~~~~~H~~CF 94 (169)
T 2rgt_A 77 ---PTQVVR---RAQDFVYHLHCF 94 (169)
T ss_dssp ---TTSEEE---EETTEEEEGGGC
T ss_pred ---CCcEEE---EcCCceEeeCCC
Confidence 223221 235778888875
No 212
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=45.39 E-value=17 Score=31.75 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=51.1
Q ss_pred CCccccccCCC----CceeecCcccccccccccccCccccccccCCcccc-cCCCCceecccccccC--cccccccccCC
Q 002824 215 YFAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQ-IDAVPNFLCQNCVYQE--HQCFACGMLGS 287 (876)
Q Consensus 215 ~d~VCaICe~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~e-v~~~~~W~C~eC~~gq--HqCfiCgklGs 287 (876)
....|+.|..+ +..+.-.| +.||..|..=. .|. ..|+... ....+..+|..|-... ..|..|++.-.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~---~~~H~~CF~C~--~C~-~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKN---RFWHDTCFRCA--KCL-HPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETT---EEEETTTCCCS--SSC-CCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCCcCcccCCcccCCceEEEECc---cChhhcCCccc--ccC-CCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 45789999874 45666554 78999986411 131 1122111 1125788999996543 68999987653
Q ss_pred CCCCCCCceeccCCCccCCCCccccc
Q 002824 288 SDKSSSQEVFPCVSATCGQFYHPECV 313 (876)
Q Consensus 288 sd~ss~~eV~kCsv~~CGkfYH~~CL 313 (876)
+ +..++. .=++.||+.|.
T Consensus 78 ~----~~~~~~----a~~~~~H~~CF 95 (101)
T 2cup_A 78 A----GDQNVE----YKGTVWHKDCF 95 (101)
T ss_dssp S----SSCEEE----SSSCEEETTTC
T ss_pred c----CCeEEE----eCCcchHHhCC
Confidence 1 223332 34788888875
No 213
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=45.26 E-value=9.9 Score=27.95 Aligned_cols=22 Identities=32% Similarity=1.010 Sum_probs=17.7
Q ss_pred CCceecccccc----cCccccccccc
Q 002824 264 VPNFLCQNCVY----QEHQCFACGML 285 (876)
Q Consensus 264 ~~~W~C~eC~~----gqHqCfiCgkl 285 (876)
.++|+|+.|.+ ....||.|+..
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCB
T ss_pred CCCCCcCcCcCCcChhcceecCCCCc
Confidence 47899999975 35789999864
No 214
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.02 E-value=9 Score=33.18 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=25.4
Q ss_pred CcccccccccCCCCCCCCCceeccCCCccCCCCccccccccCC
Q 002824 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLH 318 (876)
Q Consensus 276 qHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~ 318 (876)
...|.+|..... .-.+|. .|++.||..|+.+|+.
T Consensus 15 i~~C~IC~~~i~-------~g~~C~--~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 15 VKICNICHSLLI-------QGQSCE--TCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp SCBCSSSCCBCS-------SSEECS--SSCCEECHHHHHHHST
T ss_pred CCcCcchhhHcc-------cCCccC--CCCchhhHHHHHHHHH
Confidence 346888876542 235784 9999999999999874
No 215
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=44.44 E-value=22 Score=33.68 Aligned_cols=27 Identities=30% Similarity=0.657 Sum_probs=23.6
Q ss_pred cccccCCeEEeeccCcchhhHHHHHHH
Q 002824 697 WYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 697 ~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
-++.+|++|+|+.||...+...+-+++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~ 44 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLV 44 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHH
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHh
Confidence 367899999999999999998887775
No 216
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=43.81 E-value=50 Score=32.49 Aligned_cols=77 Identities=13% Similarity=0.243 Sum_probs=46.5
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------CCCCCcccccccc
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------PKNDFSFEKRDWM 752 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~~~~~~f~~~~w~ 752 (876)
-+..+++.+. +.+|++|+|+.||...++..+-+.+ |..+..-.+|+-+ ...+..|...|+.
T Consensus 84 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~ 158 (258)
T 2pwy_A 84 DASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAV---GEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE 158 (258)
T ss_dssp HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG
T ss_pred HHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchh
Confidence 3456777664 6799999999999999998887664 2223333444422 1234566666665
Q ss_pred ccCCCCCCCCC-ceeeecCCC
Q 002824 753 TVRPEELPDGS-QLIMGLNPP 772 (876)
Q Consensus 753 ~~~~~~l~~g~-~li~glnpp 772 (876)
.. .++.++ -+|+ +|||
T Consensus 159 ~~---~~~~~~~D~v~-~~~~ 175 (258)
T 2pwy_A 159 EA---ELEEAAYDGVA-LDLM 175 (258)
T ss_dssp GC---CCCTTCEEEEE-EESS
T ss_pred hc---CCCCCCcCEEE-ECCc
Confidence 54 244443 2333 3666
No 217
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=43.58 E-value=17 Score=40.32 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=28.8
Q ss_pred cCcccccccccCCCCCCCCCceeccCCCccCCCCccccccccC
Q 002824 275 QEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 275 gqHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
++..|-+|-..-..+ ..-....|....||+.||..|+.+|+
T Consensus 307 ~~~ECaICys~~l~~--g~lPdk~C~n~~C~h~FH~~CL~kWL 347 (381)
T 3k1l_B 307 EELRCNICFAYRLDG--GEVPLVSCDNAKCVLKCHAVCLEEWF 347 (381)
T ss_dssp SCCSCSSSCCSSCTT--CCCCCBCCSCTTCCCCBCSGGGHHHH
T ss_pred CCccCcccceeecCC--CCCccccccCCccCCccchHHHHHHH
Confidence 345688886543211 11234679888999999999999886
No 218
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=42.65 E-value=5.8 Score=36.30 Aligned_cols=16 Identities=31% Similarity=0.870 Sum_probs=14.2
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..|++.||..|+..++
T Consensus 71 ~~C~H~FH~~Ci~~Wl 86 (106)
T 3dpl_R 71 GVCNHAFHFHCISRWL 86 (106)
T ss_dssp ETTSCEEEHHHHHHHH
T ss_pred cccCcEECHHHHHHHH
Confidence 4799999999999886
No 219
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=42.53 E-value=13 Score=34.76 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=54.1
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------CCCCccccccccc
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------KNDFSFEKRDWMT 753 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~~~~~f~~~~w~~ 753 (876)
...+++.|-- ..+|++|+|+.||...++..+-++ | .+..--.|+.+. .+...|...|+..
T Consensus 19 ~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (177)
T 2esr_A 19 RGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR----G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER 92 (177)
T ss_dssp HHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT----T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred HHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence 3444444432 357899999999999998877654 2 122233333221 1346677777766
Q ss_pred cCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhh---cCCcEEEEe
Q 002824 754 VRPEELPDGSQLIMGLNPPFGVKASLANKFISQALK---FKPKLIVLI 798 (876)
Q Consensus 754 ~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~---f~p~~~~li 798 (876)
.-+. ++..=-+|+ +||||.. ....+++....+ .+|.=++++
T Consensus 93 ~~~~-~~~~fD~i~-~~~~~~~--~~~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 93 AIDC-LTGRFDLVF-LDPPYAK--ETIVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp HHHH-BCSCEEEEE-ECCSSHH--HHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hHHh-hcCCCCEEE-ECCCCCc--chHHHHHHHHHhCCCcCCCcEEEE
Confidence 3221 122223555 4999853 233444544432 356533333
No 220
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=42.44 E-value=13 Score=43.41 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCccccccCCC--C---ceeecCcccccccccccccCccccccccCCcccccC--CCCceecccccccCcccccccccCC
Q 002824 215 YFAVCAICDDG--G---DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQID--AVPNFLCQNCVYQEHQCFACGMLGS 287 (876)
Q Consensus 215 ~d~VCaICe~g--G---eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlT~~ev~--~~~~W~C~eC~~gqHqCfiCgklGs 287 (876)
.-.+|.+|.+. | .-+.|. .|.-..|..|...-...|........... ..-.|.=.+- .....|-.|+++-.
T Consensus 47 ~p~~C~~C~~~i~g~~~qg~~C~-~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~-~~~~~C~~C~~~l~ 124 (674)
T 3pfq_A 47 QPTFCSHCTDFIWGFGKQGFQCQ-VCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTY-SSPTFCDHCGSLLY 124 (674)
T ss_dssp --------------------------------------------------------CCCCCEECC-SSCCCCSSSCSCCB
T ss_pred CCCccccccccccccCCceeECC-CCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCC-CCCCCCCccccccc
Confidence 36789999874 3 467898 69999999998766666733221111000 0112221110 11246888876521
Q ss_pred CCCCCCCceeccCCCccCCCCccccccccC
Q 002824 288 SDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 288 sd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
. ....-++| ..|+...|..|....+
T Consensus 125 g---~~~qg~~C--~~C~~~~H~~C~~~v~ 149 (674)
T 3pfq_A 125 G---LIHQGMKC--DTCMMNVHKRCVMNVP 149 (674)
T ss_dssp B---SSSCEECC--SSSCCCBCSSTTSSSC
T ss_pred h---hhcCcccc--ccCCcchhhhhhhccC
Confidence 0 12357899 7999999999987554
No 221
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=41.12 E-value=5.1 Score=36.40 Aligned_cols=18 Identities=28% Similarity=0.726 Sum_probs=16.2
Q ss_pred ceeeccccccccccccCC
Q 002824 360 QLAICRRCPKAYHRKCLP 377 (876)
Q Consensus 360 qLi~C~RCPkAYH~kCLP 377 (876)
+|+.|..|..|||..|+.
T Consensus 1 ~mi~c~~c~~w~H~~c~~ 18 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCEN 18 (140)
T ss_dssp CCCCCSCCSSCHHHHHCC
T ss_pred CccccccCCCccCCcccc
Confidence 478999999999999974
No 222
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=40.59 E-value=11 Score=38.03 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=29.3
Q ss_pred cccceeeccccccccccccCCCCcccccccchhhhhhhhccCC-CCceeEEccCCccc
Q 002824 357 EDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLP-NNRILIYCLEHKII 413 (876)
Q Consensus 357 ~~~qLi~C~RCPkAYH~kCLP~gi~f~~~~~e~~~raW~~ll~-~~riLI~C~kH~i~ 413 (876)
-...+++|.+|-.+||..|+-....- +++ ..--.+.|..|.-.
T Consensus 16 ~~~~mLqC~~C~qWFH~~Cl~~~~~~--------------~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 16 LGEVELQCGICTKWFTADTFGIDTSS--------------CLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp TTSCEEECTTTCCEEEGGGGTCCCTT--------------CCTTCCSEEEECTTTSTT
T ss_pred CCceeEeeccccceecHHHhcccccC--------------ccccceeEEEEccccCCC
Confidence 45689999999999999999633210 122 12457888888653
No 223
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=40.17 E-value=14 Score=36.03 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=24.2
Q ss_pred HHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 690 ~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
++++.+.-++.+|.+|+|+.||...++..+.+
T Consensus 22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~ 53 (243)
T 3d2l_A 22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLAD 53 (243)
T ss_dssp HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTT
T ss_pred HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhh
Confidence 44445555577899999999999988877654
No 224
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=39.89 E-value=38 Score=37.59 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 689 ~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
+-++..|. +++|++|+|+|||...++..|-+.+
T Consensus 249 ~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~ 281 (450)
T 2yxl_A 249 AVASIVLD--PKPGETVVDLAAAPGGKTTHLAELM 281 (450)
T ss_dssp HHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHT
T ss_pred HHHHHhcC--CCCcCEEEEeCCCccHHHHHHHHHc
Confidence 33444444 6899999999999999888876654
No 225
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=39.84 E-value=12 Score=39.22 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=57.8
Q ss_pred eEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCCC-----C--CCccccccccccCCCCCCCCCceeeecCC--Ccc
Q 002824 704 TIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPK-----N--DFSFEKRDWMTVRPEELPDGSQLIMGLNP--PFG 774 (876)
Q Consensus 704 ~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~~-----~--~~~f~~~~w~~~~~~~l~~g~~li~glnp--pfg 774 (876)
.||||+||+-.|+.=+ ++.|-.|-+- .|+-+.- . .-.+...|=-+++++++|.=+=|+.| .| ||.
T Consensus 2 kvidLFsG~GG~~~G~----~~aG~~~v~a-~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~gg-pPCQ~fS 75 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGF----QKAGFRIICA-NEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG-PPSQSWS 75 (331)
T ss_dssp EEEEESCTTCHHHHHH----HHTTCEEEEE-EECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECC-CCGGGTE
T ss_pred eEEEeCcCccHHHHHH----HHCCCEEEEE-EeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEec-CCCCCcC
Confidence 4899999999998765 4557665431 1111100 0 01234567778889999987755555 55 564
Q ss_pred h----------hhhhHHHHHHhhhhcCCcEEEE
Q 002824 775 V----------KASLANKFISQALKFKPKLIVL 797 (876)
Q Consensus 775 ~----------~~~~a~kfi~~~~~f~p~~~~l 797 (876)
. ++.|.-.|+.-+-+++|+++|+
T Consensus 76 ~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ 108 (331)
T 3ubt_Y 76 EGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLA 108 (331)
T ss_dssp ETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCCccCCCCchhHHHHHHHHHHhccCCeEEEe
Confidence 2 3467788888888999999877
No 226
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=39.58 E-value=23 Score=38.16 Aligned_cols=89 Identities=13% Similarity=0.275 Sum_probs=52.2
Q ss_pred eEEeeccCcchhhHHHHHHHHHcCC--cccccCCCCCCC---------CCCCccccccccccCCCCCCCC-CceeeecCC
Q 002824 704 TIVDFCCGANDFSCMMKVKLEQMGK--SCSFRNYDLIQP---------KNDFSFEKRDWMTVRPEELPDG-SQLIMGLNP 771 (876)
Q Consensus 704 ~~vd~~cg~~~f~~l~~~~~~~~~~--~~~~kn~d~~~~---------~~~~~f~~~~w~~~~~~~l~~g-~~li~glnp 771 (876)
+++|++||.-.++.=+. +.|. .|-|--.|+-+. .+. +-..|--+++++++|.+ --+|+|=.|
T Consensus 12 ~vidLFaG~GG~~~G~~----~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYE----RSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp EEEEETCTTTHHHHHHH----HSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred EEEEECCChhHHHHHHH----HcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCC
Confidence 59999999999987664 4463 444111111110 011 33567777777777742 235555244
Q ss_pred --Cc-----c-------hhhhhHHHHHH-hhhhc--CCcEEEEe
Q 002824 772 --PF-----G-------VKASLANKFIS-QALKF--KPKLIVLI 798 (876)
Q Consensus 772 --pf-----g-------~~~~~a~kfi~-~~~~f--~p~~~~li 798 (876)
|| | -++.|.-.|+. -+-+. +|+++++=
T Consensus 86 CQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lE 129 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIE 129 (327)
T ss_dssp CTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEE
T ss_pred ccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEE
Confidence 59 2 23467777777 44455 89998873
No 227
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=39.41 E-value=63 Score=32.33 Aligned_cols=102 Identities=14% Similarity=0.233 Sum_probs=56.1
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC-------CCCCCccccccccccCCCCC
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ-------PKNDFSFEKRDWMTVRPEEL 759 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~-------~~~~~~f~~~~w~~~~~~~l 759 (876)
-+..+++.+. +.+|.+|+|+.||...+...+.+. | +..--.|+.+ ...+..|...|+.... +
T Consensus 22 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~---~ 90 (261)
T 3ege_A 22 IVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQ----G--LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA---L 90 (261)
T ss_dssp HHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTT----T--CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCC---S
T ss_pred HHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhC----C--CEEEEEeCCHHHHHHHHhccCCEEEECchhhCC---C
Confidence 4455555555 478999999999999999988752 2 2333334432 1225566666664432 3
Q ss_pred CCCC-ceeeecCCCcch---hhhhHHHHHHhhhhcCCcEEEEecCcc
Q 002824 760 PDGS-QLIMGLNPPFGV---KASLANKFISQALKFKPKLIVLIVPQE 802 (876)
Q Consensus 760 ~~g~-~li~glnppfg~---~~~~a~kfi~~~~~f~p~~~~li~p~~ 802 (876)
+.++ -+|+..+.-..+ .+.|++ +..+|. .=.++|+..++.
T Consensus 91 ~~~~fD~v~~~~~l~~~~~~~~~l~~--~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 91 PDKSVDGVISILAIHHFSHLEKSFQE--MQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp CTTCBSEEEEESCGGGCSSHHHHHHH--HHHHBC-SSCEEEEEECGG
T ss_pred CCCCEeEEEEcchHhhccCHHHHHHH--HHHHhC-CcEEEEEEcCCc
Confidence 3332 344443332121 222322 556677 666766665543
No 228
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=39.32 E-value=15 Score=35.87 Aligned_cols=85 Identities=19% Similarity=0.343 Sum_probs=49.7
Q ss_pred CCCccccccCCC---CceeecCcccccccccccccCcccccc-ccCCcccccCCCCceecccccccC--cccccccccCC
Q 002824 214 NYFAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQ-SLGYTQAQIDAVPNFLCQNCVYQE--HQCFACGMLGS 287 (876)
Q Consensus 214 ~~d~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~-sLGlT~~ev~~~~~W~C~eC~~gq--HqCfiCgklGs 287 (876)
.....|..|..+ +.++.-. .+.||..|..=. .|. .|+.. .....+..+|..|-... ..|..|++.-.
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~~L~~~--~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKAL---DRHWHSKCLKCS--DCHVPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEET---TEEECSSTTSCT--TTCCCCSSC--CEEETTEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred CCCCcCccCCCCccCceeEEec---CCeEccccCccC--CCCCccCCC--ceeECCEeeecCccccccccccccCCCccC
Confidence 446899999885 2345555 478999886411 131 12221 12135788999996543 57999987543
Q ss_pred CCCCCCCceeccCCCccCCCCccccc
Q 002824 288 SDKSSSQEVFPCVSATCGQFYHPECV 313 (876)
Q Consensus 288 sd~ss~~eV~kCsv~~CGkfYH~~CL 313 (876)
. .+++. ..-++.||+.|.
T Consensus 131 ~-----~~~v~---~a~~~~~H~~CF 148 (182)
T 2jtn_A 131 P-----TQVVR---RAQDFVYHLHCF 148 (182)
T ss_dssp S-----SCCCC---EETTEECCTTTC
T ss_pred C-----CceEE---ecCCCCEEeCCC
Confidence 1 12211 234677887765
No 229
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=38.87 E-value=21 Score=32.99 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=31.9
Q ss_pred ccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 681 HFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 681 hft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+|+.+-...+++++. +.+|++|+|+.||...++..+-++
T Consensus 7 ~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~ 46 (178)
T 3hm2_A 7 QLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRS 46 (178)
T ss_dssp CSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHH
Confidence 4577777777888775 578999999999999888877554
No 230
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=37.42 E-value=21 Score=37.21 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=25.1
Q ss_pred Ccccc-hhhhH-HHHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 679 GRHFT-KVEKL-KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 679 grhft-~~ekl-~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
+.|.| +|+.| +.+++. +-.+||+|+|+.||+.+..-...+
T Consensus 214 ~~h~~~~p~~l~~~~i~~---~~~~~~~vlD~f~GsGt~~~~a~~ 255 (297)
T 2zig_A 214 KDHPAPFPLELAERLVRM---FSFVGDVVLDPFAGTGTTLIAAAR 255 (297)
T ss_dssp ----CCSCHHHHHHHHHH---HCCTTCEEEETTCTTTHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH---hCCCCCEEEECCCCCCHHHHHHHH
Confidence 34555 45544 334433 337999999999999998876554
No 231
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=37.23 E-value=14 Score=29.95 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=20.6
Q ss_pred CCCccccccCCC---CceeecCccccccccccccc
Q 002824 214 NYFAVCAICDDG---GDVTFCDGRCLRSFHATITA 245 (876)
Q Consensus 214 ~~d~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~ 245 (876)
..+..|.||.+. ++.+..- +|.-.||..|+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~ 45 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVD 45 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHH
T ss_pred CCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHH
Confidence 346789999653 3333333 588999999753
No 232
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=36.90 E-value=25 Score=37.96 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=54.5
Q ss_pred eEEeeccCcchhhHHHHHHHHHcCC--cccc-------------cCCCCCCCCCCCccccccccccCCCCCCCC-Cceee
Q 002824 704 TIVDFCCGANDFSCMMKVKLEQMGK--SCSF-------------RNYDLIQPKNDFSFEKRDWMTVRPEELPDG-SQLIM 767 (876)
Q Consensus 704 ~~vd~~cg~~~f~~l~~~~~~~~~~--~~~~-------------kn~d~~~~~~~~~f~~~~w~~~~~~~l~~g-~~li~ 767 (876)
+++||+||...++.=+... |. .|-+ .||. .-.+-..|+-+++++++|.+ --+|+
T Consensus 5 ~~idLFaG~GG~~~G~~~a----G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKES----GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEETCTTTHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred EEEEECcCccHHHHHHHHc----CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEE
Confidence 5899999999999876553 53 3322 2431 11234578888888888742 23555
Q ss_pred ecCC--Ccch----------hhhhHHHHHHhhhhcC-CcEEEE
Q 002824 768 GLNP--PFGV----------KASLANKFISQALKFK-PKLIVL 797 (876)
Q Consensus 768 glnp--pfg~----------~~~~a~kfi~~~~~f~-p~~~~l 797 (876)
|=.| ||.. ++.|...|+.-+-+.+ |+++++
T Consensus 75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vl 117 (333)
T 4h0n_A 75 MSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILM 117 (333)
T ss_dssp ECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEE
T ss_pred ecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEE
Confidence 5355 5642 3456777887777787 999877
No 233
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=36.35 E-value=19 Score=33.74 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.0
Q ss_pred hccccccCCeEEeeccCcchhhHHHHHH
Q 002824 695 LHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 695 l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+.-++.+|++|+|+.||...++..|-++
T Consensus 16 l~~~~~~~~~vLDiGcG~G~~~~~la~~ 43 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLAGL 43 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHHTT
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHHHh
Confidence 4457889999999999999988877543
No 234
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=36.30 E-value=7.9 Score=43.92 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=23.1
Q ss_pred cCcCCccccccccceeeccccccccccccCCC
Q 002824 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (876)
Q Consensus 347 ~C~~sedk~~~~~qLi~C~RCPkAYH~kCLP~ 378 (876)
.|++..+ ..+.|+.|..|..+||..|+.-
T Consensus 9 iC~~~~d---~~~~MIqCD~C~~WfH~~CVgi 37 (447)
T 3kv4_A 9 LCRLPYD---VTRFMIECDMCQDWFHGSCVGV 37 (447)
T ss_dssp TTTEECC---TTSCEEECTTTCCEEEHHHHTC
T ss_pred eCCCcCC---CCCCeEEcCCCCcccccccCCc
Confidence 7777543 2468999999999999999843
No 235
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=36.26 E-value=37 Score=31.31 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=31.1
Q ss_pred cchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 682 FTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 682 ft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.|..+-...+++.+. +.+|++|+|+.||...++..+.+.
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~ 54 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGR 54 (192)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTT
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHh
Confidence 667777777777775 578999999999999888776544
No 236
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=36.02 E-value=20 Score=39.01 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=38.8
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP 740 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~ 740 (876)
.+||.+|.++ +++.+|+.|||+=|+-..||...-.. .|-. .-..||+=..
T Consensus 80 ~~KL~ei~~~--~~l~~~~~VlDLGaapGGwsq~~~~~---~gv~-~V~avdvG~~ 129 (321)
T 3lkz_A 80 TAKLRWLVER--RFLEPVGKVIDLGCGRGGWCYYMATQ---KRVQ-EVRGYTKGGP 129 (321)
T ss_dssp HHHHHHHHHT--TSCCCCEEEEEETCTTCHHHHHHTTC---TTEE-EEEEECCCST
T ss_pred HHHHHHHHHh--cCCCCCCEEEEeCCCCCcHHHHHHhh---cCCC-EEEEEEcCCC
Confidence 6799999999 78999999999999999999955433 2323 4456777654
No 237
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=35.98 E-value=28 Score=36.39 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=35.1
Q ss_pred cccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 680 RHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 680 rhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
...+.+..+..+++.|. +.+|+.|+|+.||...+...+-++.
T Consensus 56 q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~ 97 (317)
T 1dl5_A 56 STSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVV 97 (317)
T ss_dssp EEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhc
Confidence 55566788888988885 6799999999999999998887764
No 238
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=35.04 E-value=18 Score=37.42 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.8
Q ss_pred hHHHH-HHhh-ccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 687 KLKEI-VDRL-HWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 687 kl~~i-~~~l-~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
||-.. ..-| ..++++|++|+|+-||+..|...+-+..
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~V 99 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDII 99 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHh
Confidence 55443 3333 4679999999999999999988877654
No 239
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=35.01 E-value=24 Score=36.19 Aligned_cols=99 Identities=11% Similarity=0.164 Sum_probs=58.9
Q ss_pred cccccCCeEEeeccCcchhhHHHHHHHH---HcCCccc-------ccCCCCCCCCCCCccccccccccCCCCCCCCCcee
Q 002824 697 WYVRSGDTIVDFCCGANDFSCMMKVKLE---QMGKSCS-------FRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLI 766 (876)
Q Consensus 697 ~~~~~~d~~vd~~cg~~~f~~l~~~~~~---~~~~~~~-------~kn~d~~~~~~~~~f~~~~w~~~~~~~l~~g~~li 766 (876)
-||.+|++|+|++||+.-.+-.+-+... -++-+.+ -+|-....-.|...|...|++..-+.+ ..=+-++
T Consensus 11 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~Iv 89 (225)
T 3kr9_A 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVIT 89 (225)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEE
T ss_pred HhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEE
Confidence 4788999999999999999988866421 1111111 122222222456778888887543221 0234455
Q ss_pred eecCCCcchhhhhHHHHHHhhhhc-CCcEEEEecCc
Q 002824 767 MGLNPPFGVKASLANKFISQALKF-KPKLIVLIVPQ 801 (876)
Q Consensus 767 ~glnppfg~~~~~a~kfi~~~~~f-~p~~~~li~p~ 801 (876)
++ |.-+.+-..+++.+... +|...+++.|.
T Consensus 90 ia-----G~Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 90 IA-----GMGGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EE-----EECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred Ec-----CCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 54 45566677888888754 45444555555
No 240
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=34.56 E-value=11 Score=31.03 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred CcccccccccCCCCCCCCCceeccCCCccCCCCccccccccC
Q 002824 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (876)
Q Consensus 276 qHqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~ 317 (876)
...|.+|...+. ..-+..|.-...-+++|..|+..|+
T Consensus 6 ~~~CrIC~~~~~-----~~l~~PC~C~gs~~~~H~~Cl~~W~ 42 (60)
T 1vyx_A 6 VPVCWICNEELG-----NERFRACGCTGELENVHRSCLSTWL 42 (60)
T ss_dssp CCEETTTTEECS-----CCCCCSCCCSSGGGSCCHHHHHHHH
T ss_pred CCEeEEeecCCC-----CceecCcCCCCchhhhHHHHHHHHH
Confidence 356888865421 1225666334444699999999886
No 241
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=34.33 E-value=20 Score=41.85 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=27.1
Q ss_pred ccccccccCCCCCCCCCceeccCCCccCCCCccccccccCCC--CchhHHHHHHHHhh---cCCceecCCcccccCcCCc
Q 002824 278 QCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHP--DNESLAEELRERIA---AGESFTCPVHKCFVCQQSE 352 (876)
Q Consensus 278 qCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL~~~~~p--~~e~~~~eL~krI~---~g~~F~CPlH~C~~C~~se 352 (876)
.|-.|+..--. ...+-++| ..|+-..|..|....+.. ........-..+.. ....+.. .-+|..|+..-
T Consensus 50 ~C~~C~~~i~g---~~~qg~~C--~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~-~~~C~~C~~~l 123 (674)
T 3pfq_A 50 FCSHCTDFIWG---FGKQGFQC--QVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSS-PTFCDHCGSLL 123 (674)
T ss_dssp ---------------------------------------------------------CCCCCEECCSS-CCCCSSSCSCC
T ss_pred ccccccccccc---cCCceeEC--CCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCC-CCCCCcccccc
Confidence 46666653210 12356889 789999999998754311 00000000000000 0012222 34899997752
Q ss_pred cccccccceeeccccccccccccCCCC
Q 002824 353 DMNVEDLQLAICRRCPKAYHRKCLPTE 379 (876)
Q Consensus 353 dk~~~~~qLi~C~RCPkAYH~kCLP~g 379 (876)
.. -..|-.+|..|...+|.+|....
T Consensus 124 ~g--~~~qg~~C~~C~~~~H~~C~~~v 148 (674)
T 3pfq_A 124 YG--LIHQGMKCDTCMMNVHKRCVMNV 148 (674)
T ss_dssp BB--SSSCEECCSSSCCCBCSSTTSSS
T ss_pred ch--hhcCccccccCCcchhhhhhhcc
Confidence 11 11367899999999999998553
No 242
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=33.81 E-value=18 Score=37.28 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=26.1
Q ss_pred HHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 691 i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
|..-+..|+++|.+|+|+.||...+...|-+++
T Consensus 60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~ 92 (261)
T 4gek_A 60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNI 92 (261)
T ss_dssp HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTC
T ss_pred HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhc
Confidence 333455689999999999999999888776553
No 243
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=33.37 E-value=31 Score=32.95 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=54.5
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------CCCCCccccccccc
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------PKNDFSFEKRDWMT 753 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~~~~~~f~~~~w~~ 753 (876)
...+.+.|.-++.+|+.|+|+.||...++..+.+. + .+.+--.|+.+ -.| ..|...|+..
T Consensus 47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~ 120 (205)
T 3grz_A 47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL----G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLA 120 (205)
T ss_dssp HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTT
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccc
Confidence 34455556566789999999999999998887653 2 11222223221 122 6777777755
Q ss_pred cCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhh-cCCcEEEEe
Q 002824 754 VRPEELPDGSQLIMGLNPPFGVKASLANKFISQALK-FKPKLIVLI 798 (876)
Q Consensus 754 ~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~-f~p~~~~li 798 (876)
.. +..=-+|+ .|+|+.. ..+++..+.. .+|.=.+++
T Consensus 121 ~~----~~~fD~i~-~~~~~~~----~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 121 DV----DGKFDLIV-ANILAEI----LLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp TC----CSCEEEEE-EESCHHH----HHHHGGGSGGGEEEEEEEEE
T ss_pred cC----CCCceEEE-ECCcHHH----HHHHHHHHHHhcCCCCEEEE
Confidence 32 22233454 4777763 2455555553 355433333
No 244
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=33.37 E-value=8.2 Score=33.61 Aligned_cols=15 Identities=40% Similarity=0.994 Sum_probs=13.3
Q ss_pred ccCCCCccccccccC
Q 002824 303 TCGQFYHPECVSKLL 317 (876)
Q Consensus 303 ~CGkfYH~~CL~~~~ 317 (876)
.||+.||..|+..|+
T Consensus 60 ~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 60 PCHHYFHKPCVSIWL 74 (91)
T ss_dssp TTTEEEEHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 499999999998875
No 245
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=33.24 E-value=23 Score=36.20 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=25.5
Q ss_pred ccc-hhhhHH-HHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 681 HFT-KVEKLK-EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 681 hft-~~ekl~-~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
|.| +|+.|. .+++ .+..+||+|+|++||+.+..-...+
T Consensus 193 ~~~~~p~~l~~~~i~---~~~~~~~~vlD~f~GsGtt~~~a~~ 232 (260)
T 1g60_A 193 HITPKPRDLIERIIR---ASSNPNDLVLDCFMGSGTTAIVAKK 232 (260)
T ss_dssp --CCCCHHHHHHHHH---HHCCTTCEEEESSCTTCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH---HhCCCCCEEEECCCCCCHHHHHHHH
Confidence 443 455443 4443 3568999999999999998766543
No 246
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=32.95 E-value=39 Score=33.18 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=28.9
Q ss_pred hhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 686 ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+.+.+...++..++.+|.+|+|+.||...|...+.++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~ 62 (240)
T 3dli_A 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE 62 (240)
T ss_dssp HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC
Confidence 3445555555667789999999999999999888765
No 247
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=32.93 E-value=40 Score=34.85 Aligned_cols=101 Identities=7% Similarity=0.009 Sum_probs=59.6
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCC-------------CCCCCCccccccccc
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLI-------------QPKNDFSFEKRDWMT 753 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~-------------~~~~~~~f~~~~w~~ 753 (876)
.+.++++.+.|...++.+|+|+.||...+...+.++.. ...+-.+|+- .-.+...|...|.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNP----NAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 34577777776556889999999999999988877631 1233333331 012346677777665
Q ss_pred cCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhh-cCCcE
Q 002824 754 VRPEELPDGSQLIMGLNPPFGVKASLANKFISQALK-FKPKL 794 (876)
Q Consensus 754 ~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~-f~p~~ 794 (876)
. .+|.+=-+|+--|...........+++.++.. .+|.=
T Consensus 227 ~---~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG 265 (335)
T 2r3s_A 227 V---DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEG 265 (335)
T ss_dssp S---CCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred C---CCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCc
Confidence 4 34555557776677655533334455555443 34544
No 248
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=32.54 E-value=30 Score=33.22 Aligned_cols=37 Identities=19% Similarity=0.509 Sum_probs=29.6
Q ss_pred hhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 686 ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+.+..+++.+.-++.++.+|+|+.||...++..+.++
T Consensus 23 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~ 59 (227)
T 1ve3_A 23 SRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY 59 (227)
T ss_dssp HHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHc
Confidence 4566667777777778999999999999998877654
No 249
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=32.30 E-value=26 Score=37.22 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=52.9
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCCC------------CCCccccc-cc
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPK------------NDFSFEKR-DW 751 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~~------------~~~~f~~~-~w 751 (876)
.+||.||.+|. ++.+|++|||+=|+-..||+..-.. .|-. .-..||+=++. |-..|-.. |-
T Consensus 64 ~~KL~ei~ek~--~l~~g~~VvDLGaapGGWSq~~a~~---~g~~-~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv 137 (267)
T 3p8z_A 64 SAKLQWFVERN--MVIPEGRVIDLGCGRGGWSYYCAGL---KKVT-EVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDV 137 (267)
T ss_dssp HHHHHHHHHTT--SSCCCEEEEEESCTTSHHHHHHHTS---TTEE-EEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCG
T ss_pred HHHHHHHHHhc--CCCCCCEEEEcCCCCCcHHHHHHHh---cCCC-EEEEEecCCCCccCcchhhhcCcCceEEEeccce
Confidence 67999999997 8899999999999999999965543 2333 55678877653 33455444 54
Q ss_pred cccCCCCCCCCCceeeecCC
Q 002824 752 MTVRPEELPDGSQLIMGLNP 771 (876)
Q Consensus 752 ~~~~~~~l~~g~~li~glnp 771 (876)
+.+.|. | -+-|+.-+=|
T Consensus 138 ~~~~~~--~-~DtllcDIge 154 (267)
T 3p8z_A 138 FYLPPE--K-CDTLLCDIGE 154 (267)
T ss_dssp GGCCCC--C-CSEEEECCCC
T ss_pred eecCCc--c-ccEEEEecCC
Confidence 444442 2 4445554445
No 250
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=32.30 E-value=39 Score=31.96 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 691 i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+.+.|.-++.+|++|+|+.||...+...+.++
T Consensus 32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~ 63 (215)
T 2pxx_A 32 FRALLEPELRPEDRILVLGCGNSALSYELFLG 63 (215)
T ss_dssp HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHT
T ss_pred HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHc
Confidence 44444556799999999999999998877654
No 251
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=32.21 E-value=99 Score=30.70 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=36.4
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ 739 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~ 739 (876)
..++..+++.+. +.+|+.|+|+-||...++..|-++. |..+.+--.|+.+
T Consensus 29 ~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---g~~~~v~gvD~s~ 78 (275)
T 3bkx_A 29 TAHRLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQV---GSSGHVTGIDIAS 78 (275)
T ss_dssp HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHH---CTTCEEEEECSSC
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEEECCc
Confidence 346667777664 6799999999999999999888764 3334555556554
No 252
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=31.99 E-value=70 Score=33.83 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=57.1
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC----------CC--CCccccccccccC
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP----------KN--DFSFEKRDWMTVR 755 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~----------~~--~~~f~~~~w~~~~ 755 (876)
...+++.|.+ .+++.|+|+.||...++..+.++ +....+--.|+.+. .+ ...|...|.++
T Consensus 185 ~~~ll~~l~~--~~~~~VLDlGcG~G~~~~~la~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~-- 256 (343)
T 2pjd_A 185 SQLLLSTLTP--HTKGKVLDVGCGAGVLSVAFARH----SPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS-- 256 (343)
T ss_dssp HHHHHHHSCT--TCCSBCCBTTCTTSHHHHHHHHH----CTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--
T ss_pred HHHHHHhcCc--CCCCeEEEecCccCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc--
Confidence 3445565544 35789999999999999888765 22223333343321 01 12333334332
Q ss_pred CCCCCCCCceeeecCCCcch----hhhhHHHHHHhhhhc-CCcEEEEec
Q 002824 756 PEELPDGSQLIMGLNPPFGV----KASLANKFISQALKF-KPKLIVLIV 799 (876)
Q Consensus 756 ~~~l~~g~~li~glnppfg~----~~~~a~kfi~~~~~f-~p~~~~li~ 799 (876)
.+.++.=++-.||||.. ......+|+..+... +|.=.++|+
T Consensus 257 ---~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 257 ---EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp ---TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ---cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 23444434444999964 345567888887753 666444444
No 253
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=31.97 E-value=1.1e+02 Score=32.21 Aligned_cols=95 Identities=11% Similarity=0.169 Sum_probs=56.9
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------CCCCccccccccc
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------KNDFSFEKRDWMT 753 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~~~~~f~~~~w~~ 753 (876)
+.++++.+. ..++.+|||+.||...++..+.++. ....+-.+|+ +. .+...|...|..+
T Consensus 179 ~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 251 (359)
T 1x19_A 179 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF----PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 251 (359)
T ss_dssp HHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHC----TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred HHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHC----CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 456666665 4678899999999999999888763 2344555666 32 2346777777765
Q ss_pred cCCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhh-cCCc
Q 002824 754 VRPEELPDGSQLIMGLNPPFGVKASLANKFISQALK-FKPK 793 (876)
Q Consensus 754 ~~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~-f~p~ 793 (876)
. .++.++ +|+--+.-.........+++..+.. .+|.
T Consensus 252 ~---~~~~~D-~v~~~~vlh~~~d~~~~~~l~~~~~~L~pg 288 (359)
T 1x19_A 252 E---SYPEAD-AVLFCRILYSANEQLSTIMCKKAFDAMRSG 288 (359)
T ss_dssp S---CCCCCS-EEEEESCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred C---CCCCCC-EEEEechhccCCHHHHHHHHHHHHHhcCCC
Confidence 4 345564 5544344333322234445554443 2454
No 254
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=31.40 E-value=74 Score=31.38 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=50.2
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------CCCCCcccccc
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------PKNDFSFEKRD 750 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~~~~~~f~~~~ 750 (876)
+..+..++..+. +.+|++|+|+.||+..++..+-+.+ +.....--+|+-+ -.|...|...|
T Consensus 79 ~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d 153 (255)
T 3mb5_A 79 PKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIV---GPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD 153 (255)
T ss_dssp HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC
T ss_pred HhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHh---CCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence 445556777664 5789999999999999998887663 2223333344432 13447777788
Q ss_pred ccccCCCCCCCCCceeeecCCCcc
Q 002824 751 WMTVRPEELPDGSQLIMGLNPPFG 774 (876)
Q Consensus 751 w~~~~~~~l~~g~~li~glnppfg 774 (876)
+.+. ++.++-=++-+|||-.
T Consensus 154 ~~~~----~~~~~~D~v~~~~~~~ 173 (255)
T 3mb5_A 154 IYEG----IEEENVDHVILDLPQP 173 (255)
T ss_dssp GGGC----CCCCSEEEEEECSSCG
T ss_pred hhhc----cCCCCcCEEEECCCCH
Confidence 7743 4555432333488744
No 255
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=31.23 E-value=33 Score=36.45 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=31.0
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
+-.+.++++.|. +.+|.+|||++||...++..+-+++
T Consensus 12 pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~ 48 (301)
T 1m6y_A 12 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC 48 (301)
T ss_dssp CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC
Confidence 346788888885 4789999999999999999988774
No 256
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=30.82 E-value=21 Score=37.75 Aligned_cols=124 Identities=22% Similarity=0.362 Sum_probs=73.5
Q ss_pred Ccccchhh---hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC------------CCC
Q 002824 679 GRHFTKVE---KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP------------KND 743 (876)
Q Consensus 679 grhft~~e---kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~------------~~~ 743 (876)
+.|.+.-| -|.+++..+-.. .+..+|+|+=||.|-|+-..- ..-.|--+||-+. .-.
T Consensus 81 ~~H~STrerLp~ld~fY~~i~~~-~~p~~VLDlGCG~gpLal~~~-------~~~~y~a~DId~~~i~~ar~~~~~~g~~ 152 (253)
T 3frh_A 81 SLHASTKERLAELDTLYDFIFSA-ETPRRVLDIACGLNPLALYER-------GIASVWGCDIHQGLGDVITPFAREKDWD 152 (253)
T ss_dssp TTSHHHHHHGGGHHHHHHHHTSS-CCCSEEEEETCTTTHHHHHHT-------TCSEEEEEESBHHHHHHHHHHHHHTTCE
T ss_pred hhCCCHHHHhhhHHHHHHHHhcC-CCCCeEEEecCCccHHHHHhc-------cCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 56888777 566777776666 678899999999999997533 3335555665442 234
Q ss_pred CccccccccccCCCCCCCCCceeeec-CCCc---chhhhhHHHHHHhhhhcCCcEEEEecCccccccccc----cc-cce
Q 002824 744 FSFEKRDWMTVRPEELPDGSQLIMGL-NPPF---GVKASLANKFISQALKFKPKLIVLIVPQETRRLDQK----AS-YNL 814 (876)
Q Consensus 744 ~~f~~~~w~~~~~~~l~~g~~li~gl-nppf---g~~~~~a~kfi~~~~~f~p~~~~li~p~~~~~~~~~----~~-y~l 814 (876)
+.|+-.|-++..+.+ .++ +|+-+ ==|. -.++++. ++++ ..+|+-+++.+| |+.|-.. .. |.-
T Consensus 153 ~~~~v~D~~~~~~~~--~~D-vvLllk~lh~LE~q~~~~~~-~ll~---aL~~~~vvVsfP--tksl~Gr~~gm~~~Y~~ 223 (253)
T 3frh_A 153 FTFALQDVLCAPPAE--AGD-LALIFKLLPLLEREQAGSAM-ALLQ---SLNTPRMAVSFP--TRSLGGRGKGMEANYAA 223 (253)
T ss_dssp EEEEECCTTTSCCCC--BCS-EEEEESCHHHHHHHSTTHHH-HHHH---HCBCSEEEEEEE--CC-----------CHHH
T ss_pred ceEEEeecccCCCCC--Ccc-hHHHHHHHHHhhhhchhhHH-HHHH---HhcCCCEEEEcC--hHHhcCCCcchhhHHHH
Confidence 566666766665553 344 44332 1111 1122222 5565 678899999999 4554333 22 777
Q ss_pred eeccc
Q 002824 815 IWEDN 819 (876)
Q Consensus 815 ~~~d~ 819 (876)
.|+..
T Consensus 224 ~~e~~ 228 (253)
T 3frh_A 224 WFEGG 228 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 257
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=30.24 E-value=36 Score=34.46 Aligned_cols=44 Identities=27% Similarity=0.436 Sum_probs=33.2
Q ss_pred ccccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 673 MRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 673 ~ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
++|.|-|.. ||.++++.+.. -..|.+|+|+-||.-.|...|-++
T Consensus 15 ~~yvsrg~~-----kL~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~ 58 (232)
T 3opn_A 15 LRYVSRGGL-----KLEKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN 58 (232)
T ss_dssp CCSSSTTHH-----HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT
T ss_pred CCccCCcHH-----HHHHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc
Confidence 357776644 78888887743 235679999999999999888765
No 258
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.17 E-value=33 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.609 Sum_probs=17.6
Q ss_pred CCceeccccccc----CcccccccccC
Q 002824 264 VPNFLCQNCVYQ----EHQCFACGMLG 286 (876)
Q Consensus 264 ~~~W~C~eC~~g----qHqCfiCgklG 286 (876)
.++|+|+.|.+- ...|+.|+..-
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~~pk 30 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCNTPK 30 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSCCBT
T ss_pred CCCcccCCCCCccccccccccccCCcC
Confidence 578999999753 46799998653
No 259
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=30.16 E-value=53 Score=34.43 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=33.4
Q ss_pred CcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 679 GRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 679 grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
|..|+-+.-...++..| .+.+|++|+|+.||+..++..|-+.+
T Consensus 85 ~~~~~~~~~~~~~l~~l--~~~~g~~VLDiG~G~G~~~~~la~~~ 127 (336)
T 2b25_A 85 GTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAV 127 (336)
T ss_dssp SSCCCCHHHHHHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHh
Confidence 34455566667777777 47899999999999999998887654
No 260
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=30.14 E-value=1.2e+02 Score=32.41 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=64.6
Q ss_pred eeeEEEEEe-eccCCc-ceEEEEecCCceeEcCCCCchHHHHHH----HHhhhhheehhhccCcccchhHHHHHHHhhcc
Q 002824 64 NEQVIAWKF-ELSYAQ-PEIWVLSKQNNWIMLQSPKKSFKNIVR----TILITVHWLYCVKQNPEASRKYIREQMLKVFC 137 (876)
Q Consensus 64 ~~~v~aWr~-~l~~~~-p~isvls~~~~Wi~L~kPrk~ye~~ir----tvlitv~~LhfvkknP~~s~ksl~~~L~K~f~ 137 (876)
+-.|..|-+ +.++.. |-|.| +.+=.|-.|.||...|+...+ .+.+++--+-|+.+||+.+=..|...+....+
T Consensus 126 ~GpI~eW~IsGydgGe~~lI~i-sT~~AdY~L~kPS~~Yk~~~~~f~eK~~~s~~Vie~L~~~p~~syedLL~~v~~s~~ 204 (268)
T 3epz_A 126 LGPINEWWITGFDGGEKALIGF-STSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVP 204 (268)
T ss_dssp ECCCSEEEEEC---CCBCEEEE-ECSSCEEEECCBCTTTHHHHTTCCHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHCBC
T ss_pred cccceEEEEecccCCccceEEE-EeccEEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHccCC
Confidence 456778888 444544 66666 777899999999999998774 46666667789999999996677777766544
Q ss_pred --ccccc-CCcchhhhhhHHhHHHHh
Q 002824 138 --SYEVE-PSENDLLDHMPISREAAE 160 (876)
Q Consensus 138 --~fdi~-Ps~~DL~~h~~Lik~~vk 160 (876)
....+ -+++-|+.|=..|=.++.
T Consensus 205 p~~~~~~~fsed~li~~gqFI~~Qv~ 230 (268)
T 3epz_A 205 PSGLNLNRFTEDSLLRHAQFVVEQVE 230 (268)
T ss_dssp CGGGCCCCCCHHHHHTTHHHHHHHHH
T ss_pred CccccccccCHHHHHhhhhhHHHHHh
Confidence 22232 245557766666644443
No 261
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=29.26 E-value=11 Score=35.14 Aligned_cols=16 Identities=31% Similarity=0.870 Sum_probs=0.0
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..|++.||..|+..|+
T Consensus 82 ~~C~H~FH~~CI~~Wl 97 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWL 97 (117)
T ss_dssp ----------------
T ss_pred CCcCceEcHHHHHHHH
Confidence 4799999999999886
No 262
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.11 E-value=22 Score=30.89 Aligned_cols=34 Identities=24% Similarity=0.599 Sum_probs=22.7
Q ss_pred CccCCCCccccccccCCCCchhHHHHHHHHhhcC--CceecCCcccc
Q 002824 302 ATCGQFYHPECVSKLLHPDNESLAEELRERIAAG--ESFTCPVHKCF 346 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~~p~~e~~~~eL~krI~~g--~~F~CPlH~C~ 346 (876)
..||+.|-..|+..+. +.++..+ ..+.||..-|.
T Consensus 24 ~~CgH~FC~~Cl~~~~-----------~~~i~~g~~~~i~CP~~~C~ 59 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYV-----------ELLIKEGLETAISCPDAACP 59 (94)
T ss_dssp TTTTEEEEHHHHHHHH-----------HHHHHHCSCCCEECSCTTCS
T ss_pred CCCCCcccHHHHHHHH-----------HHHhhcCCcccccCccccCC
Confidence 4699999999998764 2233344 35788875443
No 263
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=28.98 E-value=19 Score=27.69 Aligned_cols=16 Identities=31% Similarity=0.912 Sum_probs=13.8
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..++
T Consensus 25 ~~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 25 LPCGHLLHRTCYEEML 40 (55)
T ss_dssp CTTSCEEETTHHHHHH
T ss_pred cCCCCcccHHHHHHHH
Confidence 5699999999998774
No 264
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.88 E-value=24 Score=30.63 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=18.3
Q ss_pred CccccccCCC---C-cee-ec--Cccccccccccccc
Q 002824 216 FAVCAICDDG---G-DVT-FC--DGRCLRSFHATITA 245 (876)
Q Consensus 216 d~VCaICe~g---G-eLL-~C--dG~C~RsFH~~Cl~ 245 (876)
+..|.||... + .|+ -| .| ....||..|+.
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~G-s~h~fH~~Cl~ 50 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTG-SLHFVHQACLQ 50 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCS-SSCCEETTHHH
T ss_pred CCCCeEcCccccCCCeeEeccccCC-cCCeeCHHHHH
Confidence 5789999753 2 343 12 22 24999999864
No 265
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=28.64 E-value=12 Score=35.06 Aligned_cols=16 Identities=13% Similarity=0.625 Sum_probs=13.7
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..++
T Consensus 69 ~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 69 LNCAHSFCSYCINEWM 84 (138)
T ss_dssp ETTSCEEEHHHHHHHT
T ss_pred CCCCCCccHHHHHHHH
Confidence 3699999999998775
No 266
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=28.63 E-value=64 Score=32.78 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 690 ~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
.+++.+ .+.+|++|+|++||...++..+.+.+
T Consensus 101 ~~~~~~--~~~~~~~VLD~G~G~G~~~~~la~~~ 132 (275)
T 1yb2_A 101 YIIMRC--GLRPGMDILEVGVGSGNMSSYILYAL 132 (275)
T ss_dssp -----C--CCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHc--CCCCcCEEEEecCCCCHHHHHHHHHc
Confidence 344444 36789999999999999998887764
No 267
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=28.38 E-value=50 Score=35.90 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=33.0
Q ss_pred cccccc-ccC-----cccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 671 HGMRYT-SFG-----RHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 671 ~g~ry~-s~g-----rhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
+|.+|. +.+ -.|....-.+..+.. ++.+|.+|+|++||...|+..+-+
T Consensus 179 ~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~---~~~~~~~VLDl~cGtG~~sl~la~ 232 (385)
T 2b78_A 179 NGISYNVFLNDGLMTGIFLDQRQVRNELIN---GSAAGKTVLNLFSYTAAFSVAAAM 232 (385)
T ss_dssp TTEEEEECSSSSSCCSSCGGGHHHHHHHHH---TTTBTCEEEEETCTTTHHHHHHHH
T ss_pred CCEEEEEeccccccCCcCCcHHHHHHHHHH---HhcCCCeEEEEeeccCHHHHHHHH
Confidence 566765 333 345555555555543 337899999999999999988765
No 268
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=28.19 E-value=25 Score=37.69 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=21.5
Q ss_pred ccc-hhhhHHHHHHhhccccccCCeEEeeccCcch
Q 002824 681 HFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGAND 714 (876)
Q Consensus 681 hft-~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~ 714 (876)
|.| +|..|.+-+ +..+-.+||+|+|+.||+.+
T Consensus 223 ~~~~kp~~l~~~~--i~~~~~~~~~vlDpF~GsGt 255 (319)
T 1eg2_A 223 HPTQKPAAVIERL--VRALSHPGSTVLDFFAGSGV 255 (319)
T ss_dssp CTTCCCHHHHHHH--HHHHSCTTCEEEETTCTTCH
T ss_pred CCCCCCHHHHHHH--HHHhCCCCCEEEecCCCCCH
Confidence 443 555443322 23467999999999999964
No 269
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=28.05 E-value=74 Score=32.18 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=46.6
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------CCCCccccccccc
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------KNDFSFEKRDWMT 753 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~~~~~f~~~~w~~ 753 (876)
+..|+..+ -+.+|++|+|+.||+..++..+-+++ |....+--+|+-+. .++..|...|+..
T Consensus 101 ~~~i~~~~--~~~~~~~VLDiG~G~G~~~~~la~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 175 (277)
T 1o54_A 101 SSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAV---GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 175 (277)
T ss_dssp HHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHT---TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred HHHHHHHh--CCCCCCEEEEECCcCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 34566655 36789999999999999988876553 32233333443221 1345666677665
Q ss_pred cCCCCCCCCC-ceeeecCCCcc
Q 002824 754 VRPEELPDGS-QLIMGLNPPFG 774 (876)
Q Consensus 754 ~~~~~l~~g~-~li~glnppfg 774 (876)
. ++.++ -+|+ +|||..
T Consensus 176 ~----~~~~~~D~V~-~~~~~~ 192 (277)
T 1o54_A 176 G----FDEKDVDALF-LDVPDP 192 (277)
T ss_dssp C----CSCCSEEEEE-ECCSCG
T ss_pred c----ccCCccCEEE-ECCcCH
Confidence 4 44443 2444 488854
No 270
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=27.43 E-value=31 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 691 i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+++.|.-++.+|.+|+|+.||...+...+.++
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~ 74 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT 74 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc
Confidence 55555666789999999999999999888765
No 271
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=27.36 E-value=47 Score=32.54 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+.+...++.-++.+|.+|+|+.||...+...+.++
T Consensus 43 ~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~ 77 (245)
T 3ggd_A 43 VVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQF 77 (245)
T ss_dssp HHHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHh
Confidence 34555666667899999999999999999888765
No 272
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.26 E-value=39 Score=27.85 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=13.1
Q ss_pred ccCCCCccccccccC
Q 002824 303 TCGQFYHPECVSKLL 317 (876)
Q Consensus 303 ~CGkfYH~~CL~~~~ 317 (876)
.||+.||..|+..+.
T Consensus 36 ~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 36 DCGHSFCQACLTANH 50 (85)
T ss_dssp SSSCCBCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998764
No 273
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=26.71 E-value=58 Score=31.48 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred ccCCeEEeeccCcchhhHHHHHH
Q 002824 700 RSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 700 ~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+|++|+|+.||...|+..+.++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~ 62 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQ 62 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCeEEEEccCcCHHHHHHHHH
Confidence 57899999999999999887765
No 274
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=26.62 E-value=45 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.3
Q ss_pred ccccCCeEEeeccCcchhhHHHHHH
Q 002824 698 YVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 698 ~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+.+|..|+|+.||...|+..|-+.
T Consensus 46 ~~~~~~~vLDiGcG~G~~~~~la~~ 70 (246)
T 2vdv_E 46 QMTKKVTIADIGCGFGGLMIDLSPA 70 (246)
T ss_dssp CBSCCEEEEEETCTTSHHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCHHHHHHHHh
Confidence 3457889999999999999888766
No 275
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.41 E-value=45 Score=25.69 Aligned_cols=16 Identities=19% Similarity=0.748 Sum_probs=13.8
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..+.
T Consensus 31 ~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 31 IECGHNFCKACITRWW 46 (58)
T ss_dssp CSSCCCCCHHHHHHHT
T ss_pred CCCCCccCHHHHHHHH
Confidence 3699999999998875
No 276
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=26.22 E-value=42 Score=36.03 Aligned_cols=130 Identities=17% Similarity=0.177 Sum_probs=73.2
Q ss_pred Ccccchhh---hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC------------CCC
Q 002824 679 GRHFTKVE---KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP------------KND 743 (876)
Q Consensus 679 grhft~~e---kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~------------~~~ 743 (876)
|.|.+.-| -|.+.++.+-+.+.+-.+|+|+=||.|-|+-.+-.. ...-.|--+|+=+. .-.
T Consensus 107 ~~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~----~p~a~y~a~DId~~~le~a~~~l~~~g~~ 182 (281)
T 3lcv_B 107 SVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGL----PAETVYIASDIDARLVGFVDEALTRLNVP 182 (281)
T ss_dssp TTSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTC----CTTCEEEEEESBHHHHHHHHHHHHHTTCC
T ss_pred hcCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 67888877 677778877788877889999999999998655221 12223333333221 012
Q ss_pred CccccccccccCCCCCCCCCceeee-cCCCcc---hhhhhHHHHHHhhhhcCCcEEEEecCc--cccccccc-cccceee
Q 002824 744 FSFEKRDWMTVRPEELPDGSQLIMG-LNPPFG---VKASLANKFISQALKFKPKLIVLIVPQ--ETRRLDQK-ASYNLIW 816 (876)
Q Consensus 744 ~~f~~~~w~~~~~~~l~~g~~li~g-lnppfg---~~~~~a~kfi~~~~~f~p~~~~li~p~--~~~~~~~~-~~y~l~~ 816 (876)
+.|+-.|-++-.|. .+-.|++- +==|.= .++++. +++ -..+|+.|++..|. ..-|-..- ..|.-.|
T Consensus 183 ~~~~v~D~~~~~p~---~~~DvaL~lkti~~Le~q~kg~g~-~ll---~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~ 255 (281)
T 3lcv_B 183 HRTNVADLLEDRLD---EPADVTLLLKTLPCLETQQRGSGW-EVI---DIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSF 255 (281)
T ss_dssp EEEEECCTTTSCCC---SCCSEEEETTCHHHHHHHSTTHHH-HHH---HHSSCSEEEEEEECC-------CHHHHHHHHH
T ss_pred ceEEEeeecccCCC---CCcchHHHHHHHHHhhhhhhHHHH-HHH---HHhCCCCEEEeccchhhcCCCcchhhHHHHHH
Confidence 56666665554443 33335533 322332 222333 333 35789999999998 32221111 2387777
Q ss_pred ccc
Q 002824 817 EDN 819 (876)
Q Consensus 817 ~d~ 819 (876)
|..
T Consensus 256 e~~ 258 (281)
T 3lcv_B 256 ESQ 258 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 277
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=26.15 E-value=52 Score=34.93 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=35.3
Q ss_pred hHHHHHHhh---ccccccCCeEEeeccCc------chhhHHHHHHHHHcCCcccccCCCCCCCCCCCcc-cccccccc
Q 002824 687 KLKEIVDRL---HWYVRSGDTIVDFCCGA------NDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSF-EKRDWMTV 754 (876)
Q Consensus 687 kl~~i~~~l---~~~~~~~d~~vd~~cg~------~~f~~l~~~~~~~~~~~~~~kn~d~~~~~~~~~f-~~~~w~~~ 754 (876)
+..++.+.| +-.+.+|++|+|++||+ -+ .++.++ .+.....--.|+.+.-.+..| ...|+.+.
T Consensus 46 ~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~---~~~~~~V~gvDis~~v~~v~~~i~gD~~~~ 118 (290)
T 2xyq_A 46 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQW---LPTGTLLVDSDLNDFVSDADSTLIGDCATV 118 (290)
T ss_dssp HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHH---SCTTCEEEEEESSCCBCSSSEEEESCGGGC
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHH---cCCCCEEEEEECCCCCCCCEEEEECccccC
Confidence 444444444 45789999999999955 33 444333 232223333444443234667 77777654
No 278
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=26.10 E-value=26 Score=35.96 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=30.6
Q ss_pred ccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 675 YTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 675 y~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
+-.-|.....-+--+-++..|. +++|++|+|+|||...++..|-+.+
T Consensus 59 ~~~~G~~~~qd~~s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~ 105 (274)
T 3ajd_A 59 EYLFGYYMPQSISSMIPPIVLN--PREDDFILDMCAAPGGKTTHLAQLM 105 (274)
T ss_dssp HHHTTSEEECCSGGGHHHHHHC--CCTTCEEEETTCTTCHHHHHHHHHT
T ss_pred hhhCCeEEEeCHHHHHHHHHhC--CCCcCEEEEeCCCccHHHHHHHHHc
Confidence 3344544444443333444443 5799999999999999988776653
No 279
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=25.97 E-value=53 Score=33.60 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=41.1
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCC--------------CCCCCcccccccc
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQ--------------PKNDFSFEKRDWM 752 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~--------------~~~~~~f~~~~w~ 752 (876)
++..+++++. +.+|++|+|+.||...+...+-++. | +..--.|+.+ -.+...|...|+.
T Consensus 60 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~---~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (302)
T 3hem_A 60 KRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEY---D--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE 132 (302)
T ss_dssp HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH---C--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred HHHHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhC---C--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH
Confidence 5666777764 5899999999999999998887764 2 3333344432 1234667777776
Q ss_pred cc
Q 002824 753 TV 754 (876)
Q Consensus 753 ~~ 754 (876)
.+
T Consensus 133 ~~ 134 (302)
T 3hem_A 133 EF 134 (302)
T ss_dssp GC
T ss_pred Hc
Confidence 54
No 280
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=25.87 E-value=52 Score=32.29 Aligned_cols=98 Identities=22% Similarity=0.396 Sum_probs=55.6
Q ss_pred hhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC-----------CCCCcccccccccc
Q 002824 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP-----------KNDFSFEKRDWMTV 754 (876)
Q Consensus 686 ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~-----------~~~~~f~~~~w~~~ 754 (876)
+.+..+++++. +.+|.+|+|+.||...+...+.+++ | +.+--.|+.+. .....|...|+...
T Consensus 42 ~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 42 EATKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY---G--AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK 114 (266)
T ss_dssp HHHHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH---C--CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC
T ss_pred HHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC
Confidence 44667777764 6789999999999999999998875 2 23333343321 03556666666554
Q ss_pred CCCCCCCCC-ceeeecCCCcchhhhhHHHHHHhhhh-cCCc
Q 002824 755 RPEELPDGS-QLIMGLNPPFGVKASLANKFISQALK-FKPK 793 (876)
Q Consensus 755 ~~~~l~~g~-~li~glnppfg~~~~~a~kfi~~~~~-f~p~ 793 (876)
.++.++ -+|+..+.-..+......+++..+.. .+|.
T Consensus 115 ---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 152 (266)
T 3ujc_A 115 ---EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT 152 (266)
T ss_dssp ---CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ---CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC
Confidence 233443 35555433222211233444444442 3564
No 281
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=25.86 E-value=17 Score=29.97 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=18.4
Q ss_pred CccccccCCCC-c--eee--cCccccccccccccc
Q 002824 216 FAVCAICDDGG-D--VTF--CDGRCLRSFHATITA 245 (876)
Q Consensus 216 d~VCaICe~gG-e--LL~--CdG~C~RsFH~~Cl~ 245 (876)
...|.||..++ + +.- |.| ..+.||..|+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~g-s~~~~H~~Cl~ 39 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTG-ELENVHRSCLS 39 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSS-GGGSCCHHHHH
T ss_pred CCEeEEeecCCCCceecCcCCCC-chhhhHHHHHH
Confidence 67899996532 2 233 332 45599999864
No 282
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=25.35 E-value=32 Score=32.74 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=26.0
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+..+++.|.- +.+|.+|+|+.||...+...+.++
T Consensus 34 ~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~ 67 (218)
T 3ou2_A 34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGL 67 (218)
T ss_dssp HHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc
Confidence 4455555432 568889999999999999988776
No 283
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.95 E-value=16 Score=33.43 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=48.3
Q ss_pred ccccccCCC---CceeecCcccccccccccccCcccccc-ccCCcccc-cCCCCceecccccccC--c--ccccccccCC
Q 002824 217 AVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQ-SLGYTQAQ-IDAVPNFLCQNCVYQE--H--QCFACGMLGS 287 (876)
Q Consensus 217 ~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~-sLGlT~~e-v~~~~~W~C~eC~~gq--H--qCfiCgklGs 287 (876)
..|+.|..+ +..|.-. .+.||+.|..=. .|. .|+..... ....+..+|..|-... . .|..|++.-.
T Consensus 3 ~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAI---DQYWHEDCLSCD--LCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBBTTTCCBCCSSEEEEET---TEEEETTTCBCT--TTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred ccCcCCCCEeCCcEEEEEC---CCcccHHHcccC--cCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 579999874 2355555 478999986411 131 13210001 1125789999996542 2 7999987643
Q ss_pred CCCCCCCceeccCCCccCCCCccccc
Q 002824 288 SDKSSSQEVFPCVSATCGQFYHPECV 313 (876)
Q Consensus 288 sd~ss~~eV~kCsv~~CGkfYH~~CL 313 (876)
. ...++. .-++.||+.|.
T Consensus 78 ~----~e~~~~----a~~~~~H~~CF 95 (131)
T 2xjy_A 78 A----YEMTMR----VKDKVYHLECF 95 (131)
T ss_dssp T----TSEEEE----ETTEEEEGGGC
T ss_pred c----cceeEe----eCCceECccCc
Confidence 1 112332 35788888875
No 284
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.75 E-value=29 Score=28.21 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=13.6
Q ss_pred ccCCCCccccccccC
Q 002824 303 TCGQFYHPECVSKLL 317 (876)
Q Consensus 303 ~CGkfYH~~CL~~~~ 317 (876)
.||+.||..|+..++
T Consensus 37 ~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 37 DCGHNFCLKCITQIG 51 (73)
T ss_dssp TTCCEEEHHHHHHHC
T ss_pred CCCChhhHHHHHHHH
Confidence 799999999998876
No 285
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=24.65 E-value=60 Score=31.35 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 690 ~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
.+++.|.-++.++..|+|+.||...+...+.++.
T Consensus 29 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~ 62 (239)
T 3bxo_A 29 DIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF 62 (239)
T ss_dssp HHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC
Confidence 3444444445789999999999999998887764
No 286
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=24.59 E-value=66 Score=31.58 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
.+.+..+++.+. +.+|++|+|+-||...++..+-+++
T Consensus 22 ~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~ 58 (256)
T 1nkv_A 22 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH 58 (256)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc
Confidence 456778888875 6899999999999999998887664
No 287
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=24.45 E-value=60 Score=31.55 Aligned_cols=35 Identities=9% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHhhccc-cccCCeEEeeccCcchhhHHHHHHH
Q 002824 689 KEIVDRLHWY-VRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 689 ~~i~~~l~~~-~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
..|...|..+ +.+|++|+|+.||...++..+-+++
T Consensus 60 ~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~ 95 (227)
T 1g8a_A 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIV 95 (227)
T ss_dssp HHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHH
T ss_pred HHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHh
Confidence 4443334333 6789999999999999999888775
No 288
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=24.30 E-value=43 Score=34.55 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.4
Q ss_pred hhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 684 KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 684 ~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
+..-+.+++++|...+.++..|+|+.||...++..+.+
T Consensus 17 k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~ 54 (313)
T 3bgv_A 17 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK 54 (313)
T ss_dssp HHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh
Confidence 34567788888888778999999999999998876654
No 289
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=24.20 E-value=91 Score=29.74 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
...+++.+. +.+|.+|+|+.||...+...+.+..
T Consensus 26 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~ 59 (219)
T 3dh0_A 26 PEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMV 59 (219)
T ss_dssp HHHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHH
T ss_pred HHHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHh
Confidence 345555553 5789999999999999999988775
No 290
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=23.40 E-value=61 Score=33.31 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=28.3
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
++..+++++. +.+|++|+|+.||...+...+.++.
T Consensus 78 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~ 112 (318)
T 2fk8_A 78 KVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF 112 (318)
T ss_dssp HHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC
Confidence 5566666664 5789999999999999998887764
No 291
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=23.02 E-value=70 Score=34.60 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=31.9
Q ss_pred ccccccc-cc------CcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 670 LHGMRYT-SF------GRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 670 l~g~ry~-s~------grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
.+|.+|. +. |-+++..+. .+.+..+ .+|++|+|++||...|+..+-++
T Consensus 187 ~~g~~f~v~~~~~~~tgff~~~~~~-~~~l~~~----~~~~~VLDl~cG~G~~sl~la~~ 241 (396)
T 3c0k_A 187 EHGMKLLVDIQHGHKTGYYLDQRDS-RLATRRY----VENKRVLNCFSYTGGFAVSALMG 241 (396)
T ss_dssp ETTEEEEECTTTSSTTSSCGGGHHH-HHHHHHH----CTTCEEEEESCTTCSHHHHHHHT
T ss_pred ECCEEEEEeccccccCCcCcCHHHH-HHHHHHh----hCCCeEEEeeccCCHHHHHHHHC
Confidence 4677774 33 444444443 3333333 68999999999999999988664
No 292
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.85 E-value=22 Score=28.29 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=13.3
Q ss_pred ccCCCCccccccccC
Q 002824 303 TCGQFYHPECVSKLL 317 (876)
Q Consensus 303 ~CGkfYH~~CL~~~~ 317 (876)
.||+.||..|+..++
T Consensus 37 ~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 37 DCGHNFCLKCITQIG 51 (63)
T ss_dssp TTSSEECHHHHHHHH
T ss_pred CCCCcchHHHHHHHH
Confidence 699999999998774
No 293
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=22.83 E-value=58 Score=36.39 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=43.8
Q ss_pred HHHHHhhCCCChhhhhhcCChhhhhhHHHhhhccccccccccccccccccCcccchhhhHHH----HHHhhcc-ccccCC
Q 002824 629 AALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKE----IVDRLHW-YVRSGD 703 (876)
Q Consensus 629 ~al~~l~~g~~~~~aka~c~p~~l~q~~~~~~kl~~~l~p~l~g~ry~s~grhft~~ekl~~----i~~~l~~-~~~~~d 703 (876)
.||+. .+..-+++.++ +.|+..|+....- |+++.. .-|-+||..+-+++ .+.+.+- .+.+|+
T Consensus 29 laL~~--~~~~~~~~~~~-----~~q~~~r~~a~~K-l~~w~~-----~~~l~~p~~~~~eQat~e~vA~~~a~~l~~g~ 95 (410)
T 3ll7_A 29 ILLGS--NDIPPEYRAAV-----ATQIELWPRLRNK-LPQWAG-----ISSLYIPSRLSLEQSSGAVTSSYKSRFIREGT 95 (410)
T ss_dssp HHHSS--SSCCHHHHHHH-----HHHHHHHHHHHHH-CHHHHT-----STTCCCCCHHHHHHSCCHHHHHHGGGGSCTTC
T ss_pred HhhcC--CCCCchhHHHH-----HHHHHHHHHHHHh-cchhhh-----cCCeecCCCCChhhcCHHHHHHHHHHhcCCCC
Confidence 34543 45555665444 8888888633221 222221 12445554433332 3333222 334699
Q ss_pred eEEeeccCcchhhHHHHH
Q 002824 704 TIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 704 ~~vd~~cg~~~f~~l~~~ 721 (876)
+|+|++||...++-.|-+
T Consensus 96 ~VLDLgcG~G~~al~LA~ 113 (410)
T 3ll7_A 96 KVVDLTGGLGIDFIALMS 113 (410)
T ss_dssp EEEESSCSSSHHHHHHHT
T ss_pred EEEEeCCCchHHHHHHHh
Confidence 999999999988766643
No 294
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=22.69 E-value=53 Score=34.60 Aligned_cols=43 Identities=9% Similarity=0.143 Sum_probs=29.2
Q ss_pred CcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 679 GRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 679 grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
|.....-+..+-++..|. +++|++|+|+|||...++..|-+.+
T Consensus 98 G~~~~qd~~s~l~~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~ 140 (315)
T 1ixk_A 98 GLIYIQEASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLM 140 (315)
T ss_dssp TSEEECCHHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHT
T ss_pred ceEEEeCHHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 443333344444455453 6899999999999999888776653
No 295
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=22.64 E-value=37 Score=35.43 Aligned_cols=36 Identities=6% Similarity=-0.078 Sum_probs=29.2
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
++.+..+++.+. +.+|+.|+|+.||.-.++..+-++
T Consensus 31 ~~~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~ 66 (261)
T 3iv6_A 31 PSDRENDIFLEN--IVPGSTVAVIGASTRFLIEKALER 66 (261)
T ss_dssp CCHHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc
Confidence 467788888774 689999999999999988777543
No 296
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=22.42 E-value=56 Score=33.05 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHhhccccccCCeEEeeccCcchhhHHHHH
Q 002824 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (876)
Q Consensus 691 i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~ 721 (876)
+++.|..++.+|++|+|+.||+..++..+.+
T Consensus 110 ~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~ 140 (254)
T 2nxc_A 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEK 140 (254)
T ss_dssp HHHHHHHHCCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHH
Confidence 3344444578999999999999999877655
No 297
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=22.02 E-value=71 Score=32.15 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=27.5
Q ss_pred hHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHH
Q 002824 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 687 kl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
++..+++++. +.+|.+|+|+-||...+...+-++.
T Consensus 52 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~ 86 (287)
T 1kpg_A 52 KIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY 86 (287)
T ss_dssp HHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHc
Confidence 4556666664 5789999999999999998887653
No 298
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=21.81 E-value=22 Score=33.17 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=0.0
Q ss_pred ccccccccccccc
Q 002824 233 GRCLRSFHATITA 245 (876)
Q Consensus 233 G~C~RsFH~~Cl~ 245 (876)
+.|.-.||..|+.
T Consensus 82 ~~C~H~FH~~CI~ 94 (117)
T 4a0k_B 82 GVCNHAFHFHCIS 94 (117)
T ss_dssp -------------
T ss_pred CCcCceEcHHHHH
Confidence 3799999999753
No 299
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=21.71 E-value=52 Score=31.43 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=25.6
Q ss_pred hhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 685 ~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
...+.+++. .+.+|.+|+|+.||...+...+.++
T Consensus 31 ~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~ 64 (211)
T 3e23_A 31 SATLTKFLG----ELPAGAKILELGCGAGYQAEAMLAA 64 (211)
T ss_dssp CHHHHHHHT----TSCTTCEEEESSCTTSHHHHHHHHT
T ss_pred hHHHHHHHH----hcCCCCcEEEECCCCCHHHHHHHHc
Confidence 334444444 4568999999999999999888765
No 300
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=21.68 E-value=2.2e+02 Score=29.98 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhCCCChhhhhhcCChhhhhhHHHhhhccccc---------------------------cccccccc---
Q 002824 624 VKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVY---------------------------LAPFLHGM--- 673 (876)
Q Consensus 624 v~a~~~al~~l~~g~~~~~aka~c~p~~l~q~~~~~~kl~~~---------------------------l~p~l~g~--- 673 (876)
--.|..|.++.++|.+.|++ +..|...+++.++| |-|+|+-.
T Consensus 128 g~~v~~A~~l~~~G~s~eeI--------~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G 199 (285)
T 3lup_A 128 GNLVRNALMCSREGMDFDVI--------VNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFNEEG 199 (285)
T ss_dssp HHHHHHHHHHHTTTCCHHHH--------HHHHHHHHTTCEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEECTTS
T ss_pred HHHHHHHHHHHHcCCCHHHH--------HHHHHHHHhhcEEEEEECChHHHhhCCCccHHHHHHHHhhCcEEEEEEccCc
Confidence 34677889999999999887 55555555444444 44776543
Q ss_pred cccccCcccchhhhHHHHHHhhccccccCCeEEeeccC-cchhhHHHHHHHHHc
Q 002824 674 RYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCG-ANDFSCMMKVKLEQM 726 (876)
Q Consensus 674 ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg-~~~f~~l~~~~~~~~ 726 (876)
++..+++--|..--++.+++.+.-...+++..|-+..| ..+--..+++.|.+.
T Consensus 200 ~l~~~~KvRg~kka~~~l~~~~~~~~~~~~~~v~i~h~~~~e~a~~l~~~l~~~ 253 (285)
T 3lup_A 200 KIVVYEKVRTEKKALKRLAEIVKEMTADGEYDIAIIHSRAQDKAEQLYNLLAKA 253 (285)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHGGGSCEEEEEEESSCHHHHHHHHHHHHHT
T ss_pred eEEEeeecCCHHHHHHHHHHHHHHhhcCCCcEEEEEeCCCHHHHHHHHHHHHhh
Confidence 57778877777666667777665555555544444444 334456677777653
No 301
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=21.65 E-value=1.5e+02 Score=31.02 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=56.4
Q ss_pred HHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------CCCCcccccccccc
Q 002824 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------KNDFSFEKRDWMTV 754 (876)
Q Consensus 689 ~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~~~~~f~~~~w~~~ 754 (876)
..+++.+. +.++.+|+|+.||...+...+.++. ..+.+-.+|+ +. .+...|...|+++
T Consensus 173 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 244 (360)
T 1tw3_A 173 DAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA----PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE- 244 (360)
T ss_dssp HHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-
T ss_pred HHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhC----CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-
Confidence 44555554 3578899999999999998887763 3445555665 32 1356777777764
Q ss_pred CCCCCCCCCceeeecCCCcchhhhhHHHHHHhhhh-cCCcEEEE
Q 002824 755 RPEELPDGSQLIMGLNPPFGVKASLANKFISQALK-FKPKLIVL 797 (876)
Q Consensus 755 ~~~~l~~g~~li~glnppfg~~~~~a~kfi~~~~~-f~p~~~~l 797 (876)
.+|.+--+|+--+.-.......+.+++.++.. .+|.=.++
T Consensus 245 ---~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~ 285 (360)
T 1tw3_A 245 ---PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRIL 285 (360)
T ss_dssp ---CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ---CCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 34554445554343222222223455555543 25653333
No 302
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=21.64 E-value=37 Score=33.28 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=47.1
Q ss_pred HHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC--------------CCCCccccccccc
Q 002824 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP--------------KNDFSFEKRDWMT 753 (876)
Q Consensus 688 l~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~--------------~~~~~f~~~~w~~ 753 (876)
...++..+... .+|.+|+|++||...++..+-++ | ...--.|+.+. .++..|...|+.+
T Consensus 66 ~~~l~~~~~~~-~~~~~vLD~gcG~G~~~~~la~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 138 (241)
T 3gdh_A 66 AEHIAGRVSQS-FKCDVVVDAFCGVGGNTIQFALT----G--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL 138 (241)
T ss_dssp HHHHHHHHHHH-SCCSEEEETTCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred HHHHHHHhhhc-cCCCEEEECccccCHHHHHHHHc----C--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH
Confidence 34444444322 37999999999999999888764 2 22333343321 1356777778777
Q ss_pred cCCCCCCCCC-ceeeecCCCcchhh
Q 002824 754 VRPEELPDGS-QLIMGLNPPFGVKA 777 (876)
Q Consensus 754 ~~~~~l~~g~-~li~glnppfg~~~ 777 (876)
..+. ++ -+|+ +||||+.-.
T Consensus 139 ~~~~----~~~D~v~-~~~~~~~~~ 158 (241)
T 3gdh_A 139 LASF----LKADVVF-LSPPWGGPD 158 (241)
T ss_dssp HGGG----CCCSEEE-ECCCCSSGG
T ss_pred hccc----CCCCEEE-ECCCcCCcc
Confidence 6532 22 2455 599997533
No 303
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=21.19 E-value=1.6e+02 Score=31.73 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhCCCChhhhhhcCChhhhhhHHHhhhccccc---------------------------cccccccc---
Q 002824 624 VKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVY---------------------------LAPFLHGM--- 673 (876)
Q Consensus 624 v~a~~~al~~l~~g~~~~~aka~c~p~~l~q~~~~~~kl~~~---------------------------l~p~l~g~--- 673 (876)
--.|..|.++.++|.+.+++ +..|...+.+.++| |-|+|+-.
T Consensus 163 g~lv~~Aa~l~~~G~s~eeI--------~~~le~~~~~~~~~f~v~~L~yL~kGGRIs~~~a~iG~lL~IKPIl~~~~dG 234 (320)
T 3pl5_A 163 GYLAMLAAQAREEGKSLKET--------KELILDVGPRLRTFFLVDNLYHLMRGGRLSKTSAIVGSLVNIKPLLWLDASG 234 (320)
T ss_dssp HHHHHHHHHHHHTTCCHHHH--------HHHHHHHGGGEEEEEECSCSHHHHHHTCCC--------CTTEEEEEEECTTS
T ss_pred HHHHHHHHHHHhcCCCHHHH--------HHHHHHHHhhceEEEEECChHHHHhCCCccHHHHHHHhhhCceEEEEEccCC
Confidence 34677788999999999887 55555555444444 34776554
Q ss_pred cccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHH
Q 002824 674 RYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQ 725 (876)
Q Consensus 674 ry~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~ 725 (876)
++..+++--|..--++.+++.+-=.+. +..|.=..++..+--..+++.|.+
T Consensus 235 ~l~~~~KvRg~kka~~~lv~~~~~~~~-~~~v~I~h~~~~e~a~~l~~~l~~ 285 (320)
T 3pl5_A 235 KLVPIAKLRGRKKGMKEMLKRATADVA-HDTAVVAYANDSEAAENLKEQLLA 285 (320)
T ss_dssp CEEEEEEEESHHHHHHHHHHHHTSSCC-SSEEEEEESSCHHHHHHHHHHHHT
T ss_pred eEEEEeeecCHHHHHHHHHHHHHHhcC-CCEEEEEeCCCHHHHHHHHHHHHh
Confidence 677887777777667777777665555 334333334444555666777654
No 304
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=21.15 E-value=27 Score=30.46 Aligned_cols=16 Identities=31% Similarity=0.791 Sum_probs=13.6
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..+.
T Consensus 39 ~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 39 PQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TTTCCEEEHHHHHHHH
T ss_pred CCCCCHhhHHHHHHHH
Confidence 3699999999998765
No 305
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=21.02 E-value=55 Score=32.42 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=28.8
Q ss_pred chhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHH
Q 002824 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 683 t~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
++.+.+..+++.+. +.+|..|+|+.||...+...+.++
T Consensus 21 ~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~ 58 (260)
T 1vl5_A 21 AKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPF 58 (260)
T ss_dssp --CCCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGG
T ss_pred cCHHHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHh
Confidence 44557788888875 458999999999999988777543
No 306
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.92 E-value=66 Score=26.49 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=20.0
Q ss_pred CCCccccccCCC---CceeecCccccccccccccc
Q 002824 214 NYFAVCAICDDG---GDVTFCDGRCLRSFHATITA 245 (876)
Q Consensus 214 ~~d~VCaICe~g---GeLL~CdG~C~RsFH~~Cl~ 245 (876)
..+..|.||.+. +..+.-- .|...||..|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~ 46 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIV 46 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTH
T ss_pred CCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHH
Confidence 346789999654 2322222 588899999753
No 307
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=20.84 E-value=2.1e+02 Score=26.90 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=24.3
Q ss_pred HHHHHHhhcc--ccccCCeEEeeccCcchhhHHHHHH
Q 002824 688 LKEIVDRLHW--YVRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 688 l~~i~~~l~~--~~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
...+++.|.. ++ +|.+|+|+.||...++..+...
T Consensus 51 ~~~~~~~l~~~~~~-~~~~vLDiG~G~G~~~~~l~~~ 86 (207)
T 1jsx_A 51 VRHILDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIV 86 (207)
T ss_dssp HHHHHHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHH
T ss_pred HHHHHhhhhhhhhc-CCCeEEEECCCCCHHHHHHHHH
Confidence 3445555432 22 5889999999999999888765
No 308
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=20.80 E-value=77 Score=32.05 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=29.8
Q ss_pred hHHHHHHhhcc--ccccCCeEEeeccCcchhhHHHHHHH
Q 002824 687 KLKEIVDRLHW--YVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 687 kl~~i~~~l~~--~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
.+..+++.|.| -+.+|.+|+|+-||...+...+.++.
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 104 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF 104 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 55667777754 35789999999999999999887764
No 309
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=20.77 E-value=2.5e+02 Score=26.64 Aligned_cols=94 Identities=12% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHHcCCcccccCCCCCCC---------CCCCccccccccccCCCCC
Q 002824 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQP---------KNDFSFEKRDWMTVRPEEL 759 (876)
Q Consensus 689 ~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~~~~~~~~kn~d~~~~---------~~~~~f~~~~w~~~~~~~l 759 (876)
..+++.+.. .+|..|+|+.||...++..+.++ | +.+--.|+.+. +....|...|.......
T Consensus 35 ~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-- 104 (220)
T 3hnr_A 35 EDILEDVVN--KSFGNVLEFGVGTGNLTNKLLLA----G--RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-- 104 (220)
T ss_dssp HHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHT----T--CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC--
T ss_pred HHHHHHhhc--cCCCeEEEeCCCCCHHHHHHHhC----C--CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC--
Confidence 445555432 38999999999999999988765 2 23334444321 12455666665554322
Q ss_pred CCCCceeeecCCCcchhhhhHHHHHHhhhh-cCCc
Q 002824 760 PDGSQLIMGLNPPFGVKASLANKFISQALK-FKPK 793 (876)
Q Consensus 760 ~~g~~li~glnppfg~~~~~a~kfi~~~~~-f~p~ 793 (876)
..=-+|+..+.-..+.......++..+.. .+|.
T Consensus 105 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 138 (220)
T 3hnr_A 105 -TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG 138 (220)
T ss_dssp -SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred -CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCC
Confidence 22235555443333222222234554443 3565
No 310
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.63 E-value=56 Score=27.33 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=23.3
Q ss_pred ceecccccccC--cccccccccCCCCCCCCCceeccCCCccCCCCccccc
Q 002824 266 NFLCQNCVYQE--HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECV 313 (876)
Q Consensus 266 ~W~C~eC~~gq--HqCfiCgklGssd~ss~~eV~kCsv~~CGkfYH~~CL 313 (876)
..+|.+|-... ..|..|++... ++++. .-++.||+.|.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~------~~~v~----a~~~~wH~~CF 42 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE------GEVVS----ALGKTYHPDCF 42 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC------SCCEE----ETTEEECTTTS
T ss_pred CCcchHHHHhHhCCcCccccCEec------cceEE----ECCceeCccCC
Confidence 34666665443 47888887542 23433 35778888876
No 311
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.59 E-value=34 Score=30.07 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.5
Q ss_pred CccCCCCccccccccC
Q 002824 302 ATCGQFYHPECVSKLL 317 (876)
Q Consensus 302 ~~CGkfYH~~CL~~~~ 317 (876)
..||+.||..|+..+.
T Consensus 37 ~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 37 TKCDHIFCKFCMLKLL 52 (112)
T ss_dssp CTTSCCCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3699999999998764
No 312
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=20.40 E-value=81 Score=30.86 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=23.0
Q ss_pred ccccCCeEEeeccCcchhhHHHHHHH
Q 002824 698 YVRSGDTIVDFCCGANDFSCMMKVKL 723 (876)
Q Consensus 698 ~~~~~d~~vd~~cg~~~f~~l~~~~~ 723 (876)
.+.+|++|+|+.||...|+..|-++.
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~ 99 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIV 99 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHh
Confidence 47889999999999999999888764
No 313
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=20.36 E-value=62 Score=31.14 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=21.9
Q ss_pred cccCCeEEeeccCcchhhHHHHHH
Q 002824 699 VRSGDTIVDFCCGANDFSCMMKVK 722 (876)
Q Consensus 699 ~~~~d~~vd~~cg~~~f~~l~~~~ 722 (876)
+.+|++|+|+.||...++..|.++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~ 48 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQ 48 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHH
T ss_pred ccCCCEEEEecCCCCHHHHHHHHH
Confidence 678999999999999999998775
No 314
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=20.07 E-value=1.4e+02 Score=31.36 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCCChhhhhhcCChhhhhhHHHhhhccccc---------------------------ccccccc---cc
Q 002824 625 KAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVY---------------------------LAPFLHG---MR 674 (876)
Q Consensus 625 ~a~~~al~~l~~g~~~~~aka~c~p~~l~q~~~~~~kl~~~---------------------------l~p~l~g---~r 674 (876)
-.|..|.+|.++|.+.+++ +.+|...+.+.++| |-|+|+- -+
T Consensus 124 ~~v~~A~~~~~~G~s~~eI--------~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G~ 195 (278)
T 3fdj_A 124 IILEQLQQMIEEGKKFEEI--------DGAIDAYMQKTRLFCSLKSLHNLAQNGRVSKVVASAAEVLGISVIGTASSHGT 195 (278)
T ss_dssp HHHHHHHHHHHTTCCHHHH--------HHHHHHHHTTEEEEEEESCCHHHHHTTSSCHHHHHGGGSTTEEEEEEECTTSS
T ss_pred HHHHHHHHHHHcCCCHHHH--------HHHHHHHHhcceEEEEECChHHHHHCCcchHHHHHHHHhhCcEEEEEEccCCe
Confidence 4677788889999998887 55555555444444 3477754 36
Q ss_pred ccccCcccchhhhHHHHHHhhccccccCCeEEeeccCcchhhHHHHHHHHH
Q 002824 675 YTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQ 725 (876)
Q Consensus 675 y~s~grhft~~ekl~~i~~~l~~~~~~~d~~vd~~cg~~~f~~l~~~~~~~ 725 (876)
+..+++--|..--+..+++.+.-.-..+..|.=..++..+--..+++.|.+
T Consensus 196 l~~~~KvRg~kka~~~l~~~~~~~~~~~~~v~i~h~~~~e~a~~l~~~l~~ 246 (278)
T 3fdj_A 196 LEAIGKCRGDKKLLVKLQALLDDAGYEGGKLRICHVENEALADKIADMIKQ 246 (278)
T ss_dssp EEEEEEEESHHHHHHHHHHHHHHHTCCSCCEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEeeeecCHHHHHHHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHHH
Confidence 777777666665556666554322122334433344444555666666665
Done!