BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002828
(876 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 115/302 (38%), Gaps = 25/302 (8%)
Query: 73 DGRRPRITFACERSG--AYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILK 130
DG + F C + G K T+ + KRP+T + GC L K+ W++
Sbjct: 111 DGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTI--TRVGCKASLSV-KMQDSGKWLVS 167
Query: 131 VVCGVHNHPVTQHVEGHSY-AGRLTEQEANILVD-LSRSNISPKEILQTL-------KQR 181
HNH + + H + R A L+D L + + P+ I+ L +
Sbjct: 168 GFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKV 227
Query: 182 DMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRY----NEETDCFKD 237
V + N R K GE + LLD LR+ + + E +
Sbjct: 228 GFTEVDCRNYMRNNRQKSIEGE------IQLLLDYLRQMNADNPNFFYSVQGSEDQSVGN 281
Query: 238 LFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDD 297
+FWA P A+ F V D TY+++ Y F G A++ +E +
Sbjct: 282 VFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEA 341
Query: 298 NYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKK 357
+++W + M P I TD D + +I VFP A + C+WHI K
Sbjct: 342 SFVWLFNTWLAAMSAHP-PVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSH 400
Query: 358 LF 359
+F
Sbjct: 401 VF 402
>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11
PE=2 SV=1
Length = 680
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 129/322 (40%), Gaps = 21/322 (6%)
Query: 41 VFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRIT---FACERSGAYRRKYTEGQ 97
+F + + E+ KR G I +++ G DG +T F C R+G K
Sbjct: 53 IFLTHDTAYEFYSTFAKRCGFSIRRHRTE-GKDGVGKGLTRRYFVCHRAGNTPIKTLSEG 111
Query: 98 TPKRPKTTGTKKCGCPFLLKGHKLDT--DDDWILKVVCGVHNHPVTQ--HVEGHSYAGRL 153
P+R + + +CGC L+ KL +W + HNH + + V +
Sbjct: 112 KPQRNRRSS--RCGCQAYLRISKLTELGSTEWRVTGFANHHNHELLEPNQVRFLPAYRSI 169
Query: 154 TEQEANILVDLSRSNISPKEILQTLKQRDMHNVS----TIKAIYNARHKYRV----GEQV 205
++ + + ++ S++ IS +++++ L+ T K + N ++ E +
Sbjct: 170 SDADKSRILMFSKTGISVQQMMRLLELEKCVEPGFLPFTEKDVRNLLQSFKKLDPEDENI 229
Query: 206 GQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTS 265
L M Q + + K ++ + D +++ W++ ++ F V+ D T++ S
Sbjct: 230 DFLRMCQSIKE--KDPNFKFEFTLDANDKLENIAWSYASSIQSYELFGDAVVFDTTHRLS 287
Query: 266 MYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDL 325
VG + + L E ++ W L+ M A P+ I+TD ++
Sbjct: 288 AVEMPLGIWVGVNNYGVPCFFGCVLLRDENLRSWSWALQAFTGFMNGKA-PQTILTDHNM 346
Query: 326 ALMNSIRAVFPRATNLLCRWHI 347
L +I P + LC W +
Sbjct: 347 CLKEAIAGEMPATKHALCIWMV 368
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1
PE=1 SV=1
Length = 827
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/445 (20%), Positives = 167/445 (37%), Gaps = 52/445 (11%)
Query: 21 GSTVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRIT 80
G VG D+D D F++ E + ++ K G IK S RR + T
Sbjct: 38 GGDVGFSGDLDLEPRNGID--FDTHEAAYIFYQEYAKSMGFTTSIKNS------RRSKKT 89
Query: 81 -------FACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVC 133
FAC R G + G + + + KK C + K D WI+
Sbjct: 90 KDFIDAKFACSRYGVTPESESSGSSSR---RSTVKKTDCKASMHV-KRRPDGKWIIHEFV 145
Query: 134 GVHNHPVTQHVEGHSYAGR---------------LTEQEANILVDLSRSNISPKEILQTL 178
HNH + + H R ++E+ + V++SR + K I L
Sbjct: 146 KDHNHELLPALAYHFRIQRNVKLAEKNNIDILHAVSERTKKMYVEMSRQSGGYKNIGSLL 205
Query: 179 KQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYN-EETDCFKD 237
+ V + +Y E+ + + +++K ++ + E ++
Sbjct: 206 QTDVSSQVD--------KGRYLALEEGDSQVLLEYFKRIKKENPKFFYAIDLNEDQRLRN 257
Query: 238 LFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDD 297
LFWA + +F VV D TY +G + A + E +
Sbjct: 258 LFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVADESME 317
Query: 298 NYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKK 357
++W ++ M A P+VI+TD+D LM+++ + P + WH+ + I +
Sbjct: 318 TFVWLIKTWLRAMGGRA-PKVILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIP---EY 373
Query: 358 LFETKERWEAFICSWNVLVL-SVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEK 416
+R E F+ +N + S T+ E+ M S F + +++ WL +++K
Sbjct: 374 FSHVMKRHENFLLKFNKCIFRSWTDDEFDMRWWKMVSQFGL--ENDEWL--LWLHEHRQK 429
Query: 417 FVAAWTDLAMHFGNVTMNRGETTHT 441
+V + G T R E+ ++
Sbjct: 430 WVPTFMSDVFLAGMSTSQRSESVNS 454
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2
PE=2 SV=1
Length = 807
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/399 (20%), Positives = 142/399 (35%), Gaps = 49/399 (12%)
Query: 21 GSTVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGG-DGRRPRI 79
ST GN S M F S+E + R+ + G I IK S G+ +
Sbjct: 23 ASTSGNVAQCATVSELRNGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDV 82
Query: 80 TFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHP 139
AC R G R K T PKT GC L K D+ W++ HNH
Sbjct: 83 KIACSRFGTKREKATAINPRSCPKT------GCKAGLH-MKRKEDEKWVIYNFVKEHNH- 134
Query: 140 VTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKY 199
I P + ++ R + + AI
Sbjct: 135 ----------------------------EICPDDFYVSV--RGKNKPAGALAIKKGLQLA 164
Query: 200 RVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMID 259
E + L H + + ++ G+ ++ + +++FW A +F VV+ D
Sbjct: 165 LEEEDLKLLLEHFMEMQDKQPGFFYAVDFDSDKR-VRNVFWLDAKAKHDYCSFSDVVLFD 223
Query: 260 CTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVI 319
Y + Y F +G + + A + + Y W + A P V+
Sbjct: 224 TFYVRNGYRIPFAPFIGVSHHRQYVLLGCALIGEVSESTYSWLFRTWLKAVGGQA-PGVM 282
Query: 320 VTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSV 379
+TD+D L + + VFP ++ C W + IS + L + + F+ S+ V S
Sbjct: 283 ITDQDKLLSDIVVEVFPDVRHIFCLWSVLSKIS---EMLNPFVSQDDGFMESFGNCVASS 339
Query: 380 TEQEYMQH-----LGAMESDFSRYPQAIDYVKQTWLANY 413
E+ + +G E + + + Q + ++ W+ +Y
Sbjct: 340 WTDEHFERRWSNMIGKFELNENEWVQLLFRDRKKWVPHY 378
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
PE=2 SV=1
Length = 703
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 89/406 (21%), Positives = 152/406 (37%), Gaps = 67/406 (16%)
Query: 40 MVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTP 99
M F S ++ + G + +K S + C S ++R +
Sbjct: 89 MEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVNRVR 148
Query: 100 KRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVT-----------QHVEGHS 148
K +T GCP +++ ++D+ W + V HNH + + V
Sbjct: 149 KETRT------GCPAMIRMRQVDSKR-WRVVEVTLDHNHLLGCKLYKSVKRKRKCVSSPV 201
Query: 149 YAGRLTEQEANILVDLSRSNISPKEILQTLKQR-----DMHNV--STIKAIYNARHKYRV 201
+ + +VD + SN++P L Q D+ N+ AIYN Y
Sbjct: 202 SDAKTIKLYRACVVD-NGSNVNPNSTLNKKFQNSTGSPDLLNLKRGDSAAIYN----YFC 256
Query: 202 GEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCT 261
Q+ + L+D N+E +++FWA F+ F V+ ID +
Sbjct: 257 RMQLTNPNFFYLMD------------VNDEGQ-LRNVFWADAFSKVSCSYFGDVIFIDSS 303
Query: 262 YKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVT 321
Y + + + G T ++ +L E ++Y W L+ S+M+ P+ IVT
Sbjct: 304 YISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRS--PQTIVT 361
Query: 322 DKDLALMNSIRAVFPRATNLLCRWHISKNI--------------SVNCKKLFETKERWEA 367
D+ L +I VFPR+ HI + I K ++ET + E
Sbjct: 362 DRCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGGLHNYDAVRKAFTKAVYETLKVVE- 420
Query: 368 FICSWNVLV--LSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLA 411
F +W +V V E E+++ L R A Y+K T+ A
Sbjct: 421 FEAAWGFMVHNFGVIENEWLRSLYE-----ERAKWAPVYLKDTFFA 461
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12
PE=2 SV=1
Length = 788
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 238 LFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDD 297
+FWA A F V+ D +Y+ Y F I+G + A + E +
Sbjct: 382 IFWADSRARFACSQFGDSVVFDTSYRKGSYSVPFATIIGFNHHRQPVLLGCAMVADESKE 441
Query: 298 NYIWTLER-LRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHI 347
++W + LR+M PR IV D+DL + ++ VFP A + W I
Sbjct: 442 AFLWLFQTWLRAM--SGRRPRSIVADQDLPIQQALVQVFPGAHHRYSAWQI 490
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana
GN=FHY3 PE=1 SV=1
Length = 839
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 48/336 (14%)
Query: 40 MVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRIT-------FACERSGAYRRK 92
M F S E + ++ + G I+ S RR + T FAC R G +R+
Sbjct: 74 MEFESHGEAYSFYQEYSRAMGFNTAIQNS------RRSKTTREFIDAKFACSRYGT-KRE 126
Query: 93 YTEG-------QTPKRPKTTGTKKCGCPFLLKGH---KLDTDDDWILKVVCGVHNHPVTQ 142
Y + Q+ + P+ ++ K K D W++ HNH +
Sbjct: 127 YDKSFNRPRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVREHNHELLP 186
Query: 143 HVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVG 202
A ++EQ I +++ K ++ +LK + + + +++
Sbjct: 187 -------AQAVSEQTRKIYAAMAKQFAEYKTVI-SLKSDSKSSFEKGRTLSVETGDFKI- 237
Query: 203 EQVGQLHMHQLLDKLRKHGYIEWHRYNE----ETDCFKDLFWAHPFAVGLLRAFPSVVMI 258
LLD L + + + + + K++FW + +F VV +
Sbjct: 238 ----------LLDFLSRMQSLNSNFFYAVDLGDDQRVKNVFWVDAKSRHNYGSFCDVVSL 287
Query: 259 DCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRV 318
D TY + Y VG + A + E Y W +E + A P+V
Sbjct: 288 DTTYVRNKYKMPLAIFVGVNQHYQYMVLGCALISDESAATYSWLMETWLRAIGGQA-PKV 346
Query: 319 IVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVN 354
++T+ D+ + + + +FP + L WH+ +S N
Sbjct: 347 LITELDVVMNSIVPEIFPNTRHCLFLWHVLMKVSEN 382
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3
PE=2 SV=2
Length = 851
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 230 EETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFA 289
+E + ++FWA + F V +D Y+ + + F G A
Sbjct: 221 DEDNQMSNVFWADSRSRVAYTHFGDTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCA 280
Query: 290 YLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHI 347
+ E D ++IW + + M D P +VTD+D A+ + VFP A + + +W +
Sbjct: 281 LILDESDTSFIWLFKTFLTAMRDQP-PVSLVTDQDRAIQIAAGQVFPGARHCINKWDV 337
>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8
PE=2 SV=2
Length = 725
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 235 FKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESE 294
+++FW A F V++ D T ++ Y + VG T + L +
Sbjct: 301 LRNVFWIDARARAAYSHFGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCGLLADQ 360
Query: 295 RDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVN 354
+ Y+W + M P++ +T++ A+ ++ VFPRA + L H+ NI +
Sbjct: 361 SFETYVWLFRAWLTCMLGRP-PQIFITEQCKAMRTAVSEVFPRAHHRLSLTHVLHNICQS 419
Query: 355 CKKL 358
+L
Sbjct: 420 VVQL 423
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7
PE=2 SV=1
Length = 764
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 238 LFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDD 297
+FWA + F V+ D +Y+ Y F +G + A + E +
Sbjct: 358 IFWADSRSRFACSQFGDAVVFDTSYRKGDYSVPFATFIGFNHHRQPVLLGGALVADESKE 417
Query: 298 NYIWTLER-LRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHI 347
+ W + LR+M PR +V D+DL + ++ VFP + W I
Sbjct: 418 AFSWLFQTWLRAM--SGRRPRSMVADQDLPIQQAVAQVFPGTHHRFSAWQI 466
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4
PE=2 SV=2
Length = 732
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Query: 231 ETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAY 290
E +++FW + ++F VV + +Y S Y + VG +
Sbjct: 188 EDHLLRNVFWVDAKGIEDYKSFSDVVSFETSYFVSKYKVPLVLFVGVNHHVQPVLLGCGL 247
Query: 291 LESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKN 350
L + Y+W ++ M P+V++TD++ A+ +I AV P + C WH+
Sbjct: 248 LADDTVYTYVWLMQSWLVAMGGQK-PKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVLDQ 306
Query: 351 ISVN 354
+ N
Sbjct: 307 LPRN 310
>sp|Q00312|RBF1_CANAX Transcription factor RBF1 OS=Candida albicans GN=RBF1 PE=1 SV=1
Length = 527
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 33/122 (27%)
Query: 41 VFNSREELVEWIRDT-GKRNGLVIVIKKSDVGGDGRRPR-ITFACERSGAYRRKYTEGQT 98
FNS+ ELV ++++ G IVI S +P+ + F CERSG++R T
Sbjct: 188 TFNSKAELVHFVKNELGPEERCKIVINSS-------KPKAVYFQCERSGSFR--TTVKDA 238
Query: 99 PKRPKTTGTKKCGCPFLL--------KGHKLDTDDD--------------WILKVVCGVH 136
KR + TK+ C + L K K D W+L+++ H
Sbjct: 239 TKRQRIAYTKRNKCAYRLVANLYPNEKDQKRKNKPDEPGHNEENSRISEMWVLRMINPQH 298
Query: 137 NH 138
NH
Sbjct: 299 NH 300
>sp|G5EGQ6|TEN1_CAEEL Teneurin-1 OS=Caenorhabditis elegans GN=ten-1 PE=1 SV=1
Length = 2684
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 542 EYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLK 601
EY R+I L +W+ + ++T S E+ + +RF++
Sbjct: 1648 EYDEYGRAIGLKRDREYWR------LGEETISMGSVNTEVLLNGQRFQQV---------- 1691
Query: 602 KLKELTNSASTFNSASTSLVELEVDGFPL-SKLGTSTYQDPSELQYVLSVQDSDSAPLRT 660
+L E + + N A+T L+ L +G+ L S LGTST D S S+ DS+ PL +
Sbjct: 1692 RLGEGNLAVHSTNGATTRLISLRNEGYSLASPLGTSTLYDKSS-----SIPDSNGEPLIS 1746
Query: 661 SSATSMQLKGRQKEKVFRTK 680
T + G + + T+
Sbjct: 1747 RRRTKVPAIGNPQRRELTTR 1766
>sp|Q08957|AFT2_YEAST Iron-regulated transcriptional activator AFT2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=AFT2 PE=4
SV=1
Length = 416
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 42 FNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKR 101
F R E+ W++ G+ IVI++SD ++TF C + R K G PK
Sbjct: 51 FEDRHEIKPWLQKIFYPQGIDIVIERSDSS------KVTFKCR---SVRSKV--GLNPKS 99
Query: 102 PKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNH 138
K + ++ CPF ++ W + V+ +H+H
Sbjct: 100 -KGSSSRSHACPFRIRAAYSVRLQKWNVVVMNNIHSH 135
>sp|P07955|MCRB_METBF Methyl-coenzyme M reductase subunit beta OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=mcrB PE=1 SV=3
Length = 434
Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 137 NHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNAR 196
++P T + G G L+ + N + S NI + + R+ N S + +IY
Sbjct: 160 SYPQTMDLMGGQVQGILSIPQNNEGLGFSLRNIMANHV-AAISNRNAMNASALSSIYEQS 218
Query: 197 HKYRVGEQVGQLHMHQLL 214
+ +G VG HQLL
Sbjct: 219 GIFEMGGAVGMFERHQLL 236
>sp|A1RY08|TMCA_THEPD Putative tRNA(Met) cytidine acetyltransferase OS=Thermofilum
pendens (strain Hrk 5) GN=Tpen_0686 PE=3 SV=1
Length = 801
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 157 EANILVDLSR---------SNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQ 207
E N+ DLS+ NI P +++ K D N+ I+ + A H +G+ +G
Sbjct: 516 EGNLGEDLSKESAKGAWLMGNIIPDRLIKHYKILDFGNLRGIRVVRIATHPSVMGKGLGS 575
Query: 208 LHMHQLLDKLRKHGYIEW 225
+ +L ++ R++GY +W
Sbjct: 576 FALSRLEEEARRNGY-DW 592
>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2
SV=1
Length = 302
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 701 DVQDVIADGHCGFRVVAELMDIGEDNW--AQVRRDLVDELQSHYDDYI 746
+++ + +DGHC +R + + + ++W A +R + SH+DD++
Sbjct: 157 EIKQIPSDGHCMYRAIEDQLKDHHNSWTVATLRNQTAKYIHSHFDDFL 204
>sp|Q88Y39|ASNA_LACPL Aspartate--ammonia ligase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=asnA PE=3 SV=1
Length = 322
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 24/128 (18%)
Query: 98 TPKRPKTTGTKKCGCPFLLK-GHKLDTD----------DDWILKVVCGVHNHPVTQHVEG 146
TP+ + KK GC FL++ G KLD+ DDW L P+ Q +E
Sbjct: 191 TPRERENAICKKLGCVFLMQIGWKLDSGERHDGRAPDYDDWKLNGDILFWYEPLDQAIEI 250
Query: 147 HSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVG 206
S R+ + S K+ L+ + D ++ + I NA Y +G +G
Sbjct: 251 SSMGIRVDAE-------------SMKKQLKDVDAEDRLSLPYHQMILNADVPYTIGGGIG 297
Query: 207 QLHMHQLL 214
Q + LL
Sbjct: 298 QSRLCMLL 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,057,905
Number of Sequences: 539616
Number of extensions: 14185423
Number of successful extensions: 33902
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 33885
Number of HSP's gapped (non-prelim): 28
length of query: 876
length of database: 191,569,459
effective HSP length: 126
effective length of query: 750
effective length of database: 123,577,843
effective search space: 92683382250
effective search space used: 92683382250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)