BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002829
(875 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/735 (60%), Positives = 551/735 (74%), Gaps = 1/735 (0%)
Query: 131 SLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPAR 190
+L L D R RLP+SIR+LLE+AIRNCD F V K D+E I+ W T K +E+PFKPAR
Sbjct: 22 NLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKPAR 81
Query: 191 VLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQAN 250
V+LQDFTGVPAVVD A MRDA+K L DP+KINP+ P DLV+DHS+QVD R +++Q N
Sbjct: 82 VILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKN 141
Query: 251 MEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVV 310
+ EF+RN+ERF FLKWGS AFHNM ++PPGSGI+HQVNLEYL RVVF+ DG YPDS+V
Sbjct: 142 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 201
Query: 311 GTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 370
GTDSHTTMID MLGQP+SMVLP V+G++L GK VT+TD+VL
Sbjct: 202 GTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVL 261
Query: 371 TVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKL 430
T+T+ LR+ GVVGKFVEF+G G+ QL +ADRATIANM PEYGAT FFPVD V++ YL
Sbjct: 262 TITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQ 321
Query: 431 TGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPL 490
TGR +E + I++YL+A MF D+N+P Q+ ++ ++LDL V PC SGPKRP D+V +
Sbjct: 322 TGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAV 381
Query: 491 KDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSN 550
DMK D+ +CL + GFKGF V + + F + L HGSVVIAAITSCTNTSN
Sbjct: 382 SDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSN 441
Query: 551 PSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYG 610
PSVMLGAGL+AKKA + GL V P++KTSL+PGSGVVT YLQ+SG+ YL+Q GF +VGYG
Sbjct: 442 PSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYG 501
Query: 611 CTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYAL 670
C TCIGNSG L E V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+
Sbjct: 502 CMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAI 561
Query: 671 AGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPM 730
AGT+ IDFEKEP+G G+ V+ KDIWP+ +EI V + V+P MFK Y+ I N
Sbjct: 562 AGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNES 621
Query: 731 WNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISP 790
WN L+ P+ L+ W+ STYI PP+F+N+T++ P + DAY LLN GDS+TTDHISP
Sbjct: 622 WNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISP 681
Query: 791 AGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKT 850
AG+I ++SPAA+YL RG+ ++FNSYGSRRGND VMARGTFANIR++N+ LN + P+T
Sbjct: 682 AGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQ-APQT 740
Query: 851 VHIPTGEKLYVFDAA 865
+H+P+GE L VFDAA
Sbjct: 741 IHLPSGEILDVFDAA 755
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/735 (59%), Positives = 551/735 (74%), Gaps = 1/735 (0%)
Query: 131 SLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPAR 190
+L L+ R RLP+SIR+LLE+A+RNCD F V K+D+E I++W T +E+PFKPAR
Sbjct: 42 NLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDIENILNWNVTQHMNIEVPFKPAR 101
Query: 191 VLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQAN 250
V+LQDFTGVP+VVD A MRDA+K L DP+KINP+ PVDLV+DHS+QVD R +++Q N
Sbjct: 102 VILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPVDLVIDHSIQVDFNRRADSLQKN 161
Query: 251 MEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVV 310
+ EF+RN+ERF FLKWGS AF NM ++PPGSGI+HQVNLEYL RVVF+ DG YPDS+V
Sbjct: 162 QDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 221
Query: 311 GTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 370
GTDSHTTMID MLGQP+SMVLP V+G++L GK VT+TD+VL
Sbjct: 222 GTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVL 281
Query: 371 TVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKL 430
T+T+ LR+ GVVGKFVEF+G G+ QL +ADRATIANM PEYGAT FFPVD V+++YL
Sbjct: 282 TITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIKYLVQ 341
Query: 431 TGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPL 490
TGR + V I +YL+A MF DY++P Q+ ++ ++LDL V PC SGPKRP D+V +
Sbjct: 342 TGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAV 401
Query: 491 KDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSN 550
DMK D+ +CL + GFKGF V + F ++ L HGSVVIAAITS TNTSN
Sbjct: 402 SDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSN 461
Query: 551 PSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYG 610
PSVMLGAGL+AKKA + GL VKP+VKTSL+PGSGVVT YL++SG+ YL+Q GF +VGYG
Sbjct: 462 PSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYG 521
Query: 611 CTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYAL 670
TCIGNSG L E V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+
Sbjct: 522 SMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAI 581
Query: 671 AGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPM 730
AGT+ IDFEKEP+GT G+ V+ +DIWP+ EEI V + V+P MF Y+ I N
Sbjct: 582 AGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNAS 641
Query: 731 WNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISP 790
WN L+ P+ LY W+P STYI PP+F+N+T++ P + DAY LLN GDS+TTDHISP
Sbjct: 642 WNALAAPSDKLYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISP 701
Query: 791 AGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKT 850
AG+I ++SPAA+YL RG+ ++FNSYGSRRGND +MARGTFANIR++N+ LN + P+T
Sbjct: 702 AGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQ-APQT 760
Query: 851 VHIPTGEKLYVFDAA 865
+H+P+GE L VFDAA
Sbjct: 761 IHLPSGETLDVFDAA 775
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 240/545 (44%), Gaps = 88/545 (16%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 90
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 91 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDSGC 305
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 306 HYDQLIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 341
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 342 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 444
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 445 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 500
Query: 700 SNEEI 704
+E+
Sbjct: 501 DADEL 505
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 240/545 (44%), Gaps = 88/545 (16%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 90
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 91 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDSGC 305
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 306 HYDQLIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 341
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 342 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 444
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 445 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 500
Query: 700 SNEEI 704
+E+
Sbjct: 501 DADEL 505
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 240/545 (44%), Gaps = 88/545 (16%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 90
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 91 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDSGC 305
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 306 HYDQLIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 341
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 342 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 444
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 445 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 500
Query: 700 SNEEI 704
+E+
Sbjct: 501 DADEL 505
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 240/545 (44%), Gaps = 88/545 (16%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 89
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 90 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 141
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 142 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 192
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 193 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 252
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 253 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGC 304
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 305 HYDQVIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 340
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 341 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 390
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 391 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 443
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 444 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 499
Query: 700 SNEEI 704
+E+
Sbjct: 500 DADEL 504
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 240/545 (44%), Gaps = 88/545 (16%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 90
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 91 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGC 305
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 306 HYDQVIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 341
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 342 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 444
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 445 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 500
Query: 700 SNEEI 704
+E+
Sbjct: 501 DADEL 505
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 240/545 (44%), Gaps = 88/545 (16%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 90
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 91 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 142
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 143 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 193
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 194 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 253
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 254 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGC 305
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 306 HYDQVIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 341
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 342 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 391
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 392 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 444
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 445 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 500
Query: 700 SNEEI 704
+E+
Sbjct: 501 DADEL 505
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 178/642 (27%), Positives = 267/642 (41%), Gaps = 125/642 (19%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 89
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 90 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 141
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 142 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 192
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 193 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 252
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 253 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGC 304
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 305 HYDQVIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 340
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 341 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 390
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 391 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 443
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 444 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 499
Query: 700 SNEEI--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTST-------LYSWDPNSTY 750
+E+ AE D + TY+ K + PTS WD
Sbjct: 500 DADELPRAEF-------DPGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKWDGKD-- 550
Query: 751 IHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAG 792
++D L+ TTDHIS AG
Sbjct: 551 -------------------LEDLQILIKVKGKCTTDHISAAG 573
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 240/545 (44%), Gaps = 88/545 (16%)
Query: 169 EKIIDWENTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKK 221
EKI+ P EI +P RV +QD T A++ ++S K
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQF---------ISSGLPK 89
Query: 222 INPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG 281
+ VP + DH ++ + ++ +A NQE + FL + A + + PG
Sbjct: 90 V--AVPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPG 141
Query: 282 SGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQ 341
SGI+HQ+ LE + G+L ++GTDSHT M G
Sbjct: 142 SGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGI 192
Query: 342 PMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401
P + P V+G KLTG L + D++L V +L G G VE++G G+ +
Sbjct: 193 PWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM 252
Query: 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQER 461
ATI NM E GAT FP +H +YL TGR+D ++ +E F D+ P+
Sbjct: 253 ATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGC 304
Query: 462 SYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVA 521
Y ++++L++++P I+GP P A P E VA
Sbjct: 305 HYDQVIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVA 340
Query: 522 KFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAP 581
+ G P +++ + I SCTN+S + A VAK+A GL+ K + ++ P
Sbjct: 341 EKE--GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITP 390
Query: 582 GSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641
GS + +++ G + L G ++ C CIG D +N IV S
Sbjct: 391 GSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----S 443
Query: 642 GNRNFEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWP 699
NRNF GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P
Sbjct: 444 YNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAP 499
Query: 700 SNEEI 704
+E+
Sbjct: 500 DADEL 504
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 86/401 (21%), Positives = 141/401 (35%), Gaps = 107/401 (26%)
Query: 280 PGSGIVHQVNLEYLGRVVFNTDGILYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXM 338
PG G++H +L R +L PD+V G DSHT
Sbjct: 474 PGDGVIHS----WLNR-------MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 339 LGQPMSMVLPGVVGFKLTGKLRDGVTATDLV------------LTVTQMLRKHGVVGKFV 386
+ M + +P V + GK++ G+T DLV LTV + +K+ G+ +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 387 EFYGEGMGQLPLADRATIANMSPEYGAT-----------MGFFPVDHVTLQYLKLTGRSD 435
E EG+ L + + + S E A + + + V L+++ G D
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 436 -----ETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVP 489
+ +E++L ++ + + Y++ + +DLAD+ EP + P P D P
Sbjct: 638 RRTLERRIQGMEKWLANPELLEA----DADAEYAAVIDIDLADIKEPILCAPNDPDDARP 693
Query: 490 LKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTS 549
L AV ++ D+V I SC
Sbjct: 694 LS-------------------AVQGEKIDEV--------------------FIGSCMTNI 714
Query: 550 NPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 609
G L A K L + WV AP + + L + G + G I
Sbjct: 715 GHFRAAGKLLDAHKG---QLPTRLWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIP 767
Query: 610 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 650
GC+ C+GN + + A V + RNF R+
Sbjct: 768 GCSLCMGNQARVADG-----------ATVVSTSTRNFPNRL 797
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 573 PWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIG-NSGDLDESVAT 627
P+ ++ SG + +GL +YL+ GFH+ Y +G +SG +DE T
Sbjct: 32 PFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMT 87
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 544 SCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLA 580
S ++ SNP V L AGL+ A L + PW +S+A
Sbjct: 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120
>pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Disordered Loops
pdb|4HPN|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Ordered Loops
Length = 378
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 203 VDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERF 262
V +A M + DP ++NP+ P+ MEF+ N R
Sbjct: 302 VQIAAALQFMAAMTPDPVRVNPIEPI----------------------MEFDRTHNPFRQ 339
Query: 263 AFLKWGSSAFHNMLVVPPGSGIVHQVNLEYL 293
A L+ A + ++ +P G G+ ++N + L
Sbjct: 340 AVLREPLEAVNGVVTIPDGPGLGIEINRDAL 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,465,089
Number of Sequences: 62578
Number of extensions: 1104616
Number of successful extensions: 2723
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2674
Number of HSP's gapped (non-prelim): 32
length of query: 875
length of database: 14,973,337
effective HSP length: 107
effective length of query: 768
effective length of database: 8,277,491
effective search space: 6357113088
effective search space used: 6357113088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)