Query 002829
Match_columns 875
No_of_seqs 295 out of 2075
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 11:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 1E-261 2E-266 2123.0 49.2 761 107-871 5-765 (892)
2 PLN00070 aconitate hydratase 100.0 3E-248 6E-253 2148.3 67.6 768 104-871 38-805 (936)
3 PTZ00092 aconitate hydratase-l 100.0 8E-246 2E-250 2125.1 67.3 766 97-871 4-769 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 3E-244 7E-249 2107.4 64.2 739 126-871 2-746 (876)
5 PRK12881 acnA aconitate hydrat 100.0 1E-242 2E-247 2100.3 66.2 748 108-871 3-757 (889)
6 PRK09277 aconitate hydratase; 100.0 4E-241 8E-246 2083.8 67.4 746 109-871 5-756 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 8E-239 2E-243 2055.6 62.3 709 126-871 12-729 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 1E-235 3E-240 2007.2 54.7 724 115-871 6-730 (861)
9 TIGR01340 aconitase_mito aconi 100.0 7E-153 1E-157 1334.8 51.8 580 164-871 19-620 (745)
10 PRK07229 aconitate hydratase; 100.0 8E-136 2E-140 1183.8 44.1 511 164-842 2-516 (646)
11 cd01586 AcnA_IRP Aconitase A c 100.0 9E-132 2E-136 1086.9 37.0 400 190-674 1-404 (404)
12 TIGR01342 acon_putative aconit 100.0 5E-131 1E-135 1142.8 44.6 505 166-834 1-512 (658)
13 TIGR00170 leuC 3-isopropylmala 100.0 1E-121 3E-126 1029.4 41.9 452 164-674 2-459 (465)
14 PF00330 Aconitase: Aconitase 100.0 2E-122 3E-127 1039.5 32.1 457 166-672 1-465 (465)
15 PRK12466 isopropylmalate isome 100.0 4E-121 8E-126 1027.0 42.7 452 164-674 3-461 (471)
16 PRK05478 isopropylmalate isome 100.0 8E-121 2E-125 1023.8 41.8 451 165-674 3-459 (466)
17 cd01584 AcnA_Mitochondrial Aco 100.0 3E-120 6E-125 1004.2 39.2 409 190-674 1-412 (412)
18 cd01583 IPMI 3-isopropylmalate 100.0 9E-116 2E-120 962.1 38.7 380 190-674 1-382 (382)
19 TIGR00139 h_aconitase homoacon 100.0 3E-115 6E-120 1011.4 41.0 427 165-674 2-452 (712)
20 TIGR01343 hacA_fam homoaconita 100.0 1E-114 3E-119 958.9 40.1 405 166-674 1-408 (412)
21 cd01585 AcnA_Bact Aconitase ca 100.0 2E-114 3E-119 950.5 37.4 379 189-674 1-380 (380)
22 PRK11413 putative hydratase; P 100.0 6E-114 1E-118 1004.2 43.8 528 164-807 34-578 (751)
23 TIGR02086 IPMI_arch 3-isopropy 100.0 4E-114 8E-119 955.4 39.1 404 165-674 1-407 (412)
24 PRK00402 3-isopropylmalate deh 100.0 7E-114 1E-118 954.9 40.9 406 164-674 2-411 (418)
25 TIGR02083 LEU2 3-isopropylmala 100.0 1E-112 3E-117 943.5 41.5 408 165-674 1-413 (419)
26 KOG0453 Aconitase/homoaconitas 100.0 1E-110 2E-115 933.0 36.1 560 182-871 83-650 (778)
27 COG0065 LeuC 3-isopropylmalate 100.0 2E-108 4E-113 889.6 38.0 409 165-674 3-416 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 2E-105 3E-110 890.3 37.9 402 168-674 2-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 1E-104 2E-109 867.3 36.6 361 190-674 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 1E-100 3E-105 846.6 37.4 388 190-674 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 1.7E-97 4E-102 867.2 40.7 421 163-711 369-822 (835)
32 TIGR00117 acnB aconitate hydra 100.0 1.5E-96 3E-101 857.0 42.8 420 163-711 370-822 (844)
33 PLN00094 aconitate hydratase 2 100.0 7.7E-94 1.7E-98 832.7 40.1 417 163-710 442-895 (938)
34 COG1049 AcnB Aconitase B [Ener 100.0 4.8E-48 1E-52 431.4 24.7 414 166-714 374-826 (852)
35 cd01580 AcnA_IRP_Swivel Aconit 100.0 1.5E-45 3.2E-50 363.3 7.3 94 778-871 1-94 (171)
36 KOG0454 3-isopropylmalate dehy 99.9 2.7E-25 5.9E-30 243.2 5.2 420 164-673 66-498 (502)
37 KOG0454 3-isopropylmalate dehy 99.8 4.6E-21 1E-25 210.4 8.5 201 446-674 16-219 (502)
38 PF00694 Aconitase_C: Aconitas 98.6 3E-09 6.5E-14 103.5 -1.4 69 802-870 3-71 (131)
39 cd01578 AcnA_Mitochon_Swivel M 98.5 1E-07 2.3E-12 94.3 3.5 67 778-871 1-67 (149)
40 PF04412 DUF521: Protein of un 95.7 0.03 6.6E-07 64.2 8.0 69 535-611 288-356 (400)
41 cd00404 Aconitase_swivel Aconi 93.9 0.021 4.6E-07 52.8 0.7 51 778-843 1-62 (88)
42 cd01579 AcnA_Bact_Swivel Bacte 93.2 0.041 8.8E-07 53.6 1.4 29 778-806 1-34 (121)
43 COG1679 Predicted aconitase [G 92.8 0.26 5.7E-06 55.9 7.2 69 535-611 288-356 (403)
44 cd01355 AcnX Putative Aconitas 88.3 1 2.3E-05 51.8 6.8 69 537-616 279-347 (389)
45 PRK00439 leuD 3-isopropylmalat 87.0 0.27 5.9E-06 50.1 1.1 15 777-791 5-19 (163)
46 TIGR02084 leud 3-isopropylmala 85.6 0.31 6.7E-06 49.5 0.7 15 777-791 4-18 (156)
47 PRK09238 bifunctional aconitat 83.0 0.8 1.7E-05 56.9 2.8 22 772-794 167-188 (835)
48 TIGR02087 LEUD_arch 3-isopropy 81.5 0.64 1.4E-05 47.1 1.0 15 777-791 4-18 (154)
49 PLN00072 3-isopropylmalate iso 78.2 0.97 2.1E-05 49.1 1.1 39 772-812 70-115 (246)
50 cd01576 AcnB_Swivel Aconitase 77.1 1.2 2.6E-05 44.2 1.3 30 777-806 1-30 (131)
51 PRK14023 homoaconitate hydrata 66.4 2.5 5.4E-05 43.4 0.9 30 777-806 5-37 (166)
52 TIGR00829 FRU PTS system, fruc 40.8 23 0.00049 32.6 2.6 31 541-572 2-32 (85)
53 COG1445 FrwB Phosphotransferas 39.6 34 0.00073 33.9 3.6 33 539-572 4-36 (122)
54 PRK03600 nrdI ribonucleotide r 37.8 29 0.00063 34.4 3.0 28 619-646 56-86 (134)
55 PF07972 Flavodoxin_NdrI: NrdI 36.5 27 0.00059 34.3 2.5 42 604-646 41-85 (122)
56 TIGR00117 acnB aconitate hydra 35.9 20 0.00044 45.1 1.9 36 769-806 166-204 (844)
57 cd01577 IPMI_Swivel Aconatase- 33.5 13 0.00028 34.9 -0.2 14 778-791 1-14 (91)
58 PRK01641 leuD isopropylmalate 30.5 23 0.00049 37.7 1.0 34 773-806 9-44 (200)
59 PRK10427 putative PTS system f 27.5 66 0.0014 31.3 3.5 33 539-572 5-37 (114)
60 COG1780 NrdI Protein involved 24.7 63 0.0014 32.8 2.8 67 616-708 54-123 (141)
61 cd01674 Homoaconitase_Swivel H 23.4 33 0.00072 34.3 0.6 27 780-806 3-33 (129)
62 COG1679 Predicted aconitase [G 22.4 2.3E+02 0.0049 33.3 6.9 156 537-710 44-238 (403)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-261 Score=2123.01 Aligned_cols=761 Identities=71% Similarity=1.188 Sum_probs=749.0
Q ss_pred CCCccccccccccCCCCcceeEEEecCCCCCCCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcceEee
Q 002829 107 PENAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPF 186 (875)
Q Consensus 107 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~eI~~ 186 (875)
++++|....++|+..++ .|+||+|++|+ .++++||||||||||+++||||++.|++++||+||+|+....+..||+|
T Consensus 5 ~~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpF 81 (892)
T KOG0452|consen 5 SENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPF 81 (892)
T ss_pred ccccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecc
Confidence 45788877788888764 79999999998 7899999999999999999999999999999999999988888899999
Q ss_pred ecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhh
Q 002829 187 KPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLK 266 (875)
Q Consensus 187 ~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flk 266 (875)
+|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||+|+|+.++++|+++|+..||+||+|||.|||
T Consensus 82 kPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlK 161 (892)
T KOG0452|consen 82 KPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLK 161 (892)
T ss_pred ccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEee
Q 002829 267 WGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 346 (875)
Q Consensus 267 w~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~ 346 (875)
|+.++|+|+.++|||+||+|||||||||||||+.++++|||++|||||||||++|||++||||||||+||+|+|||++|.
T Consensus 162 Wgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmv 241 (892)
T KOG0452|consen 162 WGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMV 241 (892)
T ss_pred hhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHH
Q 002829 347 LPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQ 426 (875)
Q Consensus 347 vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~ 426 (875)
+|+|||++|+|+|.++||++||||+||++||+.||+||||||||+|+++||++||+||+||+||||||+||||+|+.|++
T Consensus 242 lP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~ 321 (892)
T KOG0452|consen 242 LPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQ 321 (892)
T ss_pred cccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhcccc
Q 002829 427 YLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVG 506 (875)
Q Consensus 427 YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~ 506 (875)
||+.|||+++.++.+|+|+|+.++|+++..++.++.|++++++||++|+|+|+||+|||||++|++|+++|+.||.+++|
T Consensus 322 yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vg 401 (892)
T KOG0452|consen 322 YLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVG 401 (892)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHH
Q 002829 507 FKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVV 586 (875)
Q Consensus 507 ~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V 586 (875)
|||+.++++.+.+.+++.++|++++|.||+|+||+||||||||||++|++|+||||||+++||+|+||+|||++|||.+|
T Consensus 402 FKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvV 481 (892)
T KOG0452|consen 402 FKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVV 481 (892)
T ss_pred ccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchh
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHH
Q 002829 587 TKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 666 (875)
Q Consensus 587 ~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVa 666 (875)
+.||.++|+++||+++||.|+||||+|||||||+|++++.++|++|++++++|+|||||||||+||.+++||||||+||+
T Consensus 482 t~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvv 561 (892)
T KOG0452|consen 482 TKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVV 561 (892)
T ss_pred hhhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCCceecCC
Q 002829 667 AYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDP 746 (875)
Q Consensus 667 A~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y~Wd~ 746 (875)
||||||+|+|||++||||+++|||.|||+||||+++||++++++.|.|+||++.|+.|..|++.||+|++|++.+|+||+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~ 641 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDP 641 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchh
Q 002829 747 NSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEV 826 (875)
Q Consensus 747 ~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhev 826 (875)
+||||++||||++|+.+++.+++|++|+||+.||||||||||||||+|.++|||+|||.+|||.|+|||||||||||+||
T Consensus 642 ~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~v 721 (892)
T KOG0452|consen 642 KSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAV 721 (892)
T ss_pred CCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 827 MARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 827 m~RgtFan~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
|.|||||||||.|+|+. +.|+.|+|+|+||.++||||||||++.
T Consensus 722 MaRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~ 765 (892)
T KOG0452|consen 722 MARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSE 765 (892)
T ss_pred hhcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhc
Confidence 99999999999999995 899999999999999999999999974
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=2.7e-248 Score=2148.33 Aligned_cols=768 Identities=93% Similarity=1.444 Sum_probs=732.9
Q ss_pred ccCCCCccccccccccCCCCcceeEEEecCCCCCCCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcce
Q 002829 104 SMAPENAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVE 183 (875)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~e 183 (875)
+|...++|....++|+++++++.|+||+|.+|...++++|||||||||||+||||||+.+++++|++|++|......+.|
T Consensus 38 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~e 117 (936)
T PLN00070 38 SMASENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVE 117 (936)
T ss_pred cccccCchhhhhheeeecCCCceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCce
Confidence 45434788543377887731234999999998666899999999999999999999999999999999999876666679
Q ss_pred EeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhh
Q 002829 184 IPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFA 263 (875)
Q Consensus 184 I~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~ 263 (875)
|+|+|+||+||||||+|++||||||||+++++|+||++|||.+|||||||||||+|++++.+|+.+|+.+||+||.|||.
T Consensus 118 i~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~ 197 (936)
T PLN00070 118 IPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFA 197 (936)
T ss_pred eccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccceeeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeE
Q 002829 264 FLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 343 (875)
Q Consensus 264 flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~ 343 (875)
||||++++|+||+|||||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+
T Consensus 198 flkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~ 277 (936)
T PLN00070 198 FLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 277 (936)
T ss_pred hhhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999768999999999999999999999999999999999999999999
Q ss_pred EeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChH
Q 002829 344 SMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHV 423 (875)
Q Consensus 344 ~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~ 423 (875)
||++||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++
T Consensus 278 ~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~ 357 (936)
T PLN00070 278 SMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 357 (936)
T ss_pred EeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhc
Q 002829 424 TLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLEN 503 (875)
Q Consensus 424 Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~ 503 (875)
|++||+.|||++++++++++|+|+|+||+++..+|++|.|++++|||||+|||+||||++|||++||++++++|.+++..
T Consensus 358 T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~ 437 (936)
T PLN00070 358 TLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDN 437 (936)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcc
Confidence 99999999999999999999999999999766678999999999999999999999999999999999999999998876
Q ss_pred cccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCc
Q 002829 504 QVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGS 583 (875)
Q Consensus 504 ~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS 583 (875)
+++.+|+..+.++.....+++++|++..+++|.|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS 517 (936)
T PLN00070 438 KVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGS 517 (936)
T ss_pred cccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCC
Confidence 65554443322222233456689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHH
Q 002829 584 GVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 663 (875)
Q Consensus 584 ~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~ 663 (875)
++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+|+++++||+|+||||+|||||.+++||||||+
T Consensus 518 ~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~ 597 (936)
T PLN00070 518 GVVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 597 (936)
T ss_pred HHHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCCcee
Q 002829 664 LVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYS 743 (875)
Q Consensus 664 lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y~ 743 (875)
+||||||+|+|+||+++||||+|+||++|||+||||+.+||++++++.++|++|++.|+++++|++.|++|++|++.+|+
T Consensus 598 lVaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~ 677 (936)
T PLN00070 598 LVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYS 677 (936)
T ss_pred HHHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCC
Q 002829 744 WDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGN 823 (875)
Q Consensus 744 Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgN 823 (875)
||++||||++||||++++.+++++.+|++||||++||||||||||||||+|+++||||+||.++||+|+|||||||||||
T Consensus 678 wd~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN 757 (936)
T PLN00070 678 WDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGN 757 (936)
T ss_pred CCCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCc
Confidence 99999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccccccchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 824 DEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 824 hevm~RgtFan~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
|||||||||+||||+|+|++|++||+|+|+|+||.|+||||||+|++.
T Consensus 758 ~evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~ 805 (936)
T PLN00070 758 DEIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSE 805 (936)
T ss_pred chhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999975
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=7.6e-246 Score=2125.09 Aligned_cols=766 Identities=69% Similarity=1.141 Sum_probs=729.4
Q ss_pred HHHHhhhccCCCCccccccccccCCCCcceeEEEecCCCCCCCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhccc
Q 002829 97 RFQRKIASMAPENAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWEN 176 (875)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~ 176 (875)
.|.|.+++. .++|....++|+ ++ +.|+||+|.+|...+++||||||||||||+||||||..+++++|++|++|..
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~ 78 (898)
T PTZ00092 4 QQLRMSSSR--PNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78 (898)
T ss_pred eehhhcccc--cCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcc
Confidence 455666662 367754336777 54 4799999999876789999999999999999999999999999999999987
Q ss_pred CCCCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHH
Q 002829 177 TSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQ 256 (875)
Q Consensus 177 ~~~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~ 256 (875)
....+.||+|+||||+||||||+|+++|||||||+++++|+||.+|||.+||||+|||+||++++++.+++.+|+.+||+
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCccceeeccCCHHHHHH
Q 002829 257 RNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA 336 (875)
Q Consensus 257 RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaea 336 (875)
||.|||+||+|++++|+||+|+|||+|||||||+||||+|||.++|+++||++|||||||||+||||+|||||||+|+|+
T Consensus 159 rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 159 RNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hhHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceee
Q 002829 337 AMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMG 416 (875)
Q Consensus 337 amlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g 416 (875)
+|+|||+||++||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~g 318 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCcccc
Q 002829 417 FFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKAD 496 (875)
Q Consensus 417 ~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~ 496 (875)
|||+|++|++||+.|||++++++++|+|.++|++|++ +|++|.|+++|+||||+|||+||||++|||++||++++++
T Consensus 319 ifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 395 (898)
T PTZ00092 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKD 395 (898)
T ss_pred EecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCC
Confidence 9999999999999999999999999999999999973 5779999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee
Q 002829 497 WHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVK 576 (875)
Q Consensus 497 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~Vk 576 (875)
|.+++..+.+.+++.+.+++..+.+++.++|++++|.||+|+||||||||||||||+|+||++|||||+++|+||+||||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk 475 (898)
T PTZ00092 396 FTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIK 475 (898)
T ss_pred HHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 98877655444444443332222234446888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCc
Q 002829 577 TSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRA 656 (875)
Q Consensus 577 tsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~ 656 (875)
++|+|||++|++||+++||+++|+++||+|++||||+||||||+++++++++|.+|++++++|+|+||||+|||||.+++
T Consensus 476 ~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~ 555 (898)
T PTZ00092 476 TSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRA 555 (898)
T ss_pred EEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCHHHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCC
Q 002829 657 NYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSV 736 (875)
Q Consensus 657 ~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~ 736 (875)
||||||+|||||||+|+|+||+++||||+|++|++|||+||||+.+||+++++++++|++|++.|.+|+++++.|++|++
T Consensus 556 ~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~ 635 (898)
T PTZ00092 556 NYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQV 635 (898)
T ss_pred eEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcc
Q 002829 737 PTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNS 816 (875)
Q Consensus 737 ~~~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfns 816 (875)
+++.+|+||++||||++||||++++.+|+++.+|++||||++||||||||||||||+|+++||||+||+++||+|+||||
T Consensus 636 ~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfns 715 (898)
T PTZ00092 636 PKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNT 715 (898)
T ss_pred CCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCchhhhccccccchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 817 YGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 817 ygsRRgNhevm~RgtFan~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
||||||||||||||||+||||+|+|+ |.|||+|+|+|+||.|+||||||+|++.
T Consensus 716 ygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~ 769 (898)
T PTZ00092 716 YGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQE 769 (898)
T ss_pred cccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHc
Confidence 99999999999999999999999999 8999999999999999999999999986
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.4e-244 Score=2107.40 Aligned_cols=739 Identities=64% Similarity=1.042 Sum_probs=708.3
Q ss_pred eeEEEecCCCC--CCCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHHHH
Q 002829 126 FGKFFSLPALN--DPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVV 203 (875)
Q Consensus 126 ~~~~~~l~~~~--~~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa~v 203 (875)
.|+||+|.+|+ ..++++|||||||||||+||||||..+++++|++|++|.+....+.||+|+||||+||||||+|++|
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 59999999985 3579999999999999999999999999999999999987666677999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCc
Q 002829 204 DLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSG 283 (875)
Q Consensus 204 dlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~G 283 (875)
|||||||+++++|+||.+|||.+||+||||||||++.+++.+++.+|+.+||+||.|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccceeeecCC----CccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccC
Q 002829 284 IVHQVNLEYLGRVVFNTD----GILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKL 359 (875)
Q Consensus 284 I~HQVnlE~la~vv~~~~----G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L 359 (875)
||||||+||||+|||.++ |++|||++|||||||||+||||+|||||||+|+|++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999652 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHH
Q 002829 360 RDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVS 439 (875)
Q Consensus 360 ~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~ 439 (875)
++|||||||||+|+++||++|++||||||+|||+++||++||||||||++|||||+||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccc
Q 002829 440 MIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDK 519 (875)
Q Consensus 440 l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~ 519 (875)
++++|+|+|+||+++ +++|.|++++|||||+|||+||||++|||++||+++++.|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~~d---~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~---- 394 (876)
T TIGR01341 322 LVEKYARAQGLFYDD---SEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE---- 394 (876)
T ss_pred HHHHHHHhcccccCC---CCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh----
Confidence 999999999999631 2689999999999999999999999999999999999999887765433333332111
Q ss_pred cceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHH
Q 002829 520 VAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYL 599 (875)
Q Consensus 520 ~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L 599 (875)
..+..++|++..|.||+|+||||||||||||||+|+||++|||||++||+||+||||++|+|||++|++||+++||+++|
T Consensus 395 ~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L 474 (876)
T TIGR01341 395 PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYL 474 (876)
T ss_pred hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHH
Confidence 11122568888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCC
Q 002829 600 NQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFE 679 (875)
Q Consensus 600 ~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~ 679 (875)
+++||+|++|||++||||+|+++++++++|.+|+++++||+|+||||+|||||.+++||||||+|||||||+|+|+||++
T Consensus 475 ~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~ 554 (876)
T TIGR01341 475 EELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLY 554 (876)
T ss_pred HHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCCceecCCCCCCccCCCCCCC
Q 002829 680 KEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKN 759 (875)
Q Consensus 680 ~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y~Wd~~StYI~~PpfF~~ 759 (875)
+||||.|++|++|||+||||+.+||++++.+.|+++||++.|.++++|++.|++|+++++.+|+||++||||++||||++
T Consensus 555 ~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~ 634 (876)
T TIGR01341 555 TEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEE 634 (876)
T ss_pred CCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhh
Q 002829 760 MTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVN 839 (875)
Q Consensus 760 ~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N 839 (875)
++.+|+++.+|++||||++||||||||||||||+|+++||||+||+++||+|+||||||||||||||||||||+||||+|
T Consensus 635 ~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N 714 (876)
T TIGR01341 635 MKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKN 714 (876)
T ss_pred cccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhh
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 840 KLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 840 ~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
+|++|+|||+|+|+|+||.|+||||||+|++.
T Consensus 715 ~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~ 746 (876)
T TIGR01341 715 LMVKGKEGGYTVHFPDGKVASVYDAAMQYKKE 746 (876)
T ss_pred hcccCccCceeEecCCCccccHHHHHHHHHhc
Confidence 99999999999999999999999999999864
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.1e-242 Score=2100.30 Aligned_cols=748 Identities=59% Similarity=0.979 Sum_probs=713.4
Q ss_pred CCccccccccccCCCCcceeEEEecCCCCC---CCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcceE
Q 002829 108 ENAFKGILTSLPKPGGGEFGKFFSLPALND---PRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEI 184 (875)
Q Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~---~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~eI 184 (875)
.++|. ..++|++++ +.|+||+|.+|+. .+++||||||||||||+||||||..|++++|++|++|......+.||
T Consensus 3 ~~~~~-~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHK-TLKEFDVGG--KTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCccc-cccceeeCC--eeEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 46664 346788765 4899999999853 47999999999999999999999999999999999998766667799
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhh
Q 002829 185 PFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAF 264 (875)
Q Consensus 185 ~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~f 264 (875)
+|+||||+|||+||+||++|||||||+++++|+||.++||.+||++||||+||++.+++.+++.+|+.+||+||.|||+|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccceeeCCCCceeccccccccceeeecC----CCccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcC
Q 002829 265 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 340 (875)
Q Consensus 265 lkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~----~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg 340 (875)
||||+++|+||+|+|||+|||||||+||||+|||.+ +|+++||++|||||||||+||||+|||||||+|+|++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecC
Q 002829 341 QPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPV 420 (875)
Q Consensus 341 ~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~ 420 (875)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||++||||||||++|||||+||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHH
Q 002829 421 DHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHAC 500 (875)
Q Consensus 421 De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~ 500 (875)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999975 57899999999999999999999999999999999999999887
Q ss_pred hhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEe
Q 002829 501 LENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLA 580 (875)
Q Consensus 501 l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~Vktsva 580 (875)
+..+...++..... -.+....+.||+|+||||||||||||||+|+||++|||||++||+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 64332222211100 02345678899999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEec
Q 002829 581 PGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLA 660 (875)
Q Consensus 581 PGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLA 660 (875)
|||++|++||+++||+++|+++||+|++|||++||||+|++.++++++|++||+++++|+|+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CHHHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCC
Q 002829 661 SPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTST 740 (875)
Q Consensus 661 SP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~ 740 (875)
||+|||||||+|+|+||+++||||+|+||++|||+||||+.+||++++++.++++||++.|+++++|++.|++|+++++.
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccC
Q 002829 741 LYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSR 820 (875)
Q Consensus 741 ~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsR 820 (875)
+|+||++||||++||||++|..+++++++|++||||++||||||||||||||+|+++||||+||+++||+|+||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhccccccchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 821 RGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 821 RgNhevm~RgtFan~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
||||||||||||+||||+|+|++++|||||+|+|+||+|+||||||+|++.
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~ 757 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAA 757 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999974
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=3.8e-241 Score=2083.76 Aligned_cols=746 Identities=62% Similarity=1.040 Sum_probs=714.2
Q ss_pred CccccccccccCCCCcceeEEEecCCCCC---CCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcceEe
Q 002829 109 NAFKGILTSLPKPGGGEFGKFFSLPALND---PRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIP 185 (875)
Q Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~---~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~eI~ 185 (875)
++|.. .++|+..+ +.|+||+|.+|+. .++++|||||||||||+||||||+.+++++|++|++|......+.||+
T Consensus 5 ~~~~~-~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei~ 81 (888)
T PRK09277 5 DSFKA-RKTLEVGG--KSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREIP 81 (888)
T ss_pred Ccccc-cceeeeCC--eeEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCceee
Confidence 56633 46777765 3799999988853 479999999999999999999999999999999999987666678999
Q ss_pred eecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhh
Q 002829 186 FKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFL 265 (875)
Q Consensus 186 ~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~fl 265 (875)
|+||||+|||+||+|+++|||||||+++++|+||++|||.+||+|||||+||++.+++.+++.+|+.+||+||.|||.||
T Consensus 82 f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~fL 161 (888)
T PRK09277 82 FRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFL 161 (888)
T ss_pred eccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccceeeCCCCceeccccccccceeeecC-CC--ccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCe
Q 002829 266 KWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-DG--ILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQP 342 (875)
Q Consensus 266 kw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~-~G--~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p 342 (875)
|||+++|+||+|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|+|||
T Consensus 162 kw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~ 241 (888)
T PRK09277 162 KWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQP 241 (888)
T ss_pred HHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999977 78 9999999999999999999999999999999999999999
Q ss_pred EEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCCh
Q 002829 343 MSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDH 422 (875)
Q Consensus 343 ~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De 422 (875)
+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||++||||||||++|||||+||||+|+
T Consensus 242 ~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De 321 (888)
T PRK09277 242 SSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDE 321 (888)
T ss_pred EEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhh
Q 002829 423 VTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLE 502 (875)
Q Consensus 423 ~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~ 502 (875)
+|++||+.|||++++++++|+|.|+|++|+. +|++|.|+++++||||+|||+||||++|||++||++++++|.+++.
T Consensus 322 ~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~ 398 (888)
T PRK09277 322 ETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAE 398 (888)
T ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhch
Confidence 9999999999999999999999999999963 5789999999999999999999999999999999999998776532
Q ss_pred ccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecC
Q 002829 503 NQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPG 582 (875)
Q Consensus 503 ~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPG 582 (875)
. +.+++ ..+..++|....|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+||
T Consensus 399 ~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PG 467 (888)
T PRK09277 399 L--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPG 467 (888)
T ss_pred h--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCC
Confidence 1 11121 112345778889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCH
Q 002829 583 SGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 662 (875)
Q Consensus 583 S~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP 662 (875)
|++|++||+++||+++|+++||+|++||||+||||+|+++++++++|++|+++++||+|+||||+||||+..++||||||
T Consensus 468 S~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP 547 (888)
T PRK09277 468 SKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASP 547 (888)
T ss_pred CHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCCce
Q 002829 663 PLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLY 742 (875)
Q Consensus 663 ~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y 742 (875)
+|||||||+|+|+|||++||||+|+||++|||+||||+.+||++++.+.|++++|++.|+++++|++.|++++++++.+|
T Consensus 548 ~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~ 627 (888)
T PRK09277 548 PLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLY 627 (888)
T ss_pred HHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcC
Q 002829 743 SWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRG 822 (875)
Q Consensus 743 ~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRg 822 (875)
+||++||||++||||++++.+++++++|++||||++||||||||||||||+|+++||||+||+++||+|+||||||||||
T Consensus 628 ~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRg 707 (888)
T PRK09277 628 DWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRG 707 (888)
T ss_pred ccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccc
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccccccchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 823 NDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 823 Nhevm~RgtFan~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
||||||||||+||||+|+|++|+|||||+|+|+||.|+||||||+|++.
T Consensus 708 N~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~ 756 (888)
T PRK09277 708 NHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEE 756 (888)
T ss_pred cchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999975
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=8.2e-239 Score=2055.63 Aligned_cols=709 Identities=45% Similarity=0.780 Sum_probs=678.3
Q ss_pred eeEEEecC-CCC---CCCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHH
Q 002829 126 FGKFFSLP-ALN---DPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPA 201 (875)
Q Consensus 126 ~~~~~~l~-~~~---~~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa 201 (875)
.|+||+|. +|. ..+++||||||||||||+||||||..++++ |++|++|. .+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w~----~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIERK----RDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcCC----CCCeeccCcceeeeccccCcch
Confidence 69999996 664 347999999999999999999999999999 99999992 3579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCccc-chhHHHhchHHHHHHhhhhhhhhhccccccccceeeCC
Q 002829 202 VVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR-SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPP 280 (875)
Q Consensus 202 ~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~-~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpP 280 (875)
+||||+|||+++++|+||++|||.+||+||||||||+|.++ +.+|+.+|+.+||+||.|||+|||||+++|+||+||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCceeccccccccceeeecCCCccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCC
Q 002829 281 GSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLR 360 (875)
Q Consensus 281 G~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~ 360 (875)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||||+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHH
Q 002829 361 DGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSM 440 (875)
Q Consensus 361 ~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l 440 (875)
+|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCccccccc
Q 002829 441 IEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKV 520 (875)
Q Consensus 441 ~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~ 520 (875)
+|+|.|+|++|++ +|++|.|+++||||||+|||+||+|++|||++||+|++.... ..... .
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~------------~~~~~--~-- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGI------------AGPAE--E-- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhccc------------ccccc--c--
Confidence 9999999999975 467999999999999999999999999999999999874211 00000 0
Q ss_pred ceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHH
Q 002829 521 AKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLN 600 (875)
Q Consensus 521 ~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~ 600 (875)
...| ++.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0123 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCC
Q 002829 601 QQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEK 680 (875)
Q Consensus 601 ~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~ 680 (875)
++||+|++||||+||||+|++.++++++|.+++++.++|+|+||||+||||+..+++|||||++||||||+|+|+||+++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCCceecCCCCCCccCCCCCCCC
Q 002829 681 EPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNM 760 (875)
Q Consensus 681 eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y~Wd~~StYI~~PpfF~~~ 760 (875)
||||.|+||++|||+||||+.+||++++++.++++||++.|+++++|++ ++++.+++|+||++|||||+||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999999987 788999999999999999999999988
Q ss_pred CCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhh
Q 002829 761 TMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNK 840 (875)
Q Consensus 761 ~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~ 840 (875)
++++.+|++||||++||||||||||||||+|+++||||+||+++||.++||||||+|||||||||||||+|+||+|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--C--CCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 841 LLN--G--EVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 841 l~~--~--~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
|++ | ++||||+|+|+||.|+||||||+|++.
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~ 729 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNR 729 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHc
Confidence 998 4 589999999999999999999999985
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.4e-235 Score=2007.15 Aligned_cols=724 Identities=61% Similarity=1.027 Sum_probs=696.4
Q ss_pred cccccCCCCcceeEEEecCCCCCC-CCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcceEeeecceeee
Q 002829 115 LTSLPKPGGGEFGKFFSLPALNDP-RIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLL 193 (875)
Q Consensus 115 ~~~~~~~~~g~~~~~~~l~~~~~~-~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~eI~~~pdrVl~ 193 (875)
+++|.+++ ..|+||+|++++.. .+++||||+|||+||++|++|+ ++++++.++.|......+.||+|+|+||+|
T Consensus 6 ~~~~~~~~--~~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGG--KTYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCC--ceeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 45677765 48999999999754 7999999999999999999998 899999999998665566799999999999
Q ss_pred ecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccccccc
Q 002829 194 QDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFH 273 (875)
Q Consensus 194 qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ 273 (875)
|||||+|++||+|+||+++.++|+||+++||.+||||+||||+++|.++..+|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEE
Q 002829 274 NMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 353 (875)
Q Consensus 274 ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV 353 (875)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHHhhcCC
Q 002829 354 KLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 433 (875)
Q Consensus 354 ~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR 433 (875)
+|+|+|++|||||||||+|+++||++||||||||||||||++||++||+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCC
Q 002829 434 SDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVP 513 (875)
Q Consensus 434 ~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~ 513 (875)
++++++++|+|+++||||++. +|++|+|+++||||||+|+|+||||++|||+++|++++++|.+.+.....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~------- 391 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEI------- 391 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhc-------
Confidence 999999999999999999874 57789999999999999999999999999999999999999876654311
Q ss_pred cccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHc
Q 002829 514 KQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQS 593 (875)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~ 593 (875)
+..+...|+ ++.||+|+||+|||||||||||+|+||+||||||+++|++++|||||+|+|||++|++||+++
T Consensus 392 ------~~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 392 ------KRVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred ------ccccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 011333454 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCc
Q 002829 594 GLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 673 (875)
Q Consensus 594 GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~ 673 (875)
||+++|+++||++++|||||||||||+|+++++++|.+|++++++|+||||||+||+||.++++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCCceecCCCCCCccC
Q 002829 674 VDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHE 753 (875)
Q Consensus 674 I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y~Wd~~StYI~~ 753 (875)
|++|+++||+|.+++|++|||+||||+.+||.+.+...+++++|++.|.+||+ |+.++++++++|.|++.||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhccccc
Q 002829 754 PPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFA 833 (875)
Q Consensus 754 PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFa 833 (875)
||||+++..++.+ |++||+|++||||||||||||||+|+++||||+||.++||++.||||||||||||||||||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999999776644 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 834 NIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 834 n~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
|||+||+|+++ |||||+|+|+|+ ||||||+|+++
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~ 730 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEE 730 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHc
Confidence 99999999998 999999999999 99999999985
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=6.7e-153 Score=1334.79 Aligned_cols=580 Identities=28% Similarity=0.440 Sum_probs=508.1
Q ss_pred cHHHHHHHHhcccCCC------------C-cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 002829 164 TKDDVEKIIDWENTSP------------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDL 230 (875)
Q Consensus 164 ~~~~iekil~~~~~~~------------~-~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~l 230 (875)
.++++||||+.+.+.. + +.+|.++|||||+||+||+++++||++| |.+ +|.+|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCeE
Confidence 5789999999887633 2 3579999999999999999999998764 543 34556799
Q ss_pred EeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-ee
Q 002829 231 VVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SV 309 (875)
Q Consensus 231 viDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tv 309 (875)
++||++|++.... .|+..+++||.|+|+|++|++++| ||+|+|||+||||||++|+ +++|+ ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999775432 467889999999999999999999 8999999999999999994 56786 69
Q ss_pred eecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEe
Q 002829 310 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFY 389 (875)
Q Consensus 310 VGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~ 389 (875)
|||||||||+||||+|||||||+|++++|+|+++||++||||+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHH-HHHHHHHHccccccCCCCCCCCcccEEEE
Q 002829 390 GEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVS-MIEEYLRANKMFVDYNEPEQERSYSSYLQ 468 (875)
Q Consensus 390 GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~-l~e~y~k~~~l~~~~~~~D~~a~Y~~vie 468 (875)
||||++||+++|||||||++|+|||+|+||+|++|++||+.+||++...+ .++.|.. .+| .+|++|.|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999875422 3333322 123 4788999999999
Q ss_pred EEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCC
Q 002829 469 LDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNT 548 (875)
Q Consensus 469 iDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~ 548 (875)
||||+|||+||+|++|||++||+|+++++++ .|++ .+|+||||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 1222 24789999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhh
Q 002829 549 SNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATA 628 (875)
Q Consensus 549 s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~ 628 (875)
|+||++.|| .++|+|+++ +++|.||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++. .
T Consensus 355 r~~Dl~~AA-~ilk~a~~~--~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSRCA-SIVKDAEQA--GLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHHHH-HHhhhhhhC--CCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 999966555 556787655 56677999999999999999999999999999999999999999999987553 1
Q ss_pred hccCCeEEEEEeccCCCCCCCCCC-CCCceEecCHHHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHH
Q 002829 629 ITENDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEV 707 (875)
Q Consensus 629 i~~~~l~~~aVsSgNRNFeGR~gp-~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~ 707 (875)
+.+|+.+ ++|+|+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| .|++|++|||+ ||+.+|+.+.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 4567754 6799999999999954 4578999999999999999999999999999 69999999999 7999999886
Q ss_pred HHhcCChhhhhhhhccccCCCcCCcccCCC--CCCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccc
Q 002829 708 VQSSVLPDMFKSTYEAITKGNPMWNQLSVP--TSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITT 785 (875)
Q Consensus 708 ~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~--~~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTT 785 (875)
+| ..++..|+.+..+ ++..|+|+|+||||++||||+ +|+..+|++||||+++||+|||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~-----~~~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFE-----PWNGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCC-----CCCcCCccCCeEEEEECCCcCh
Confidence 22 2457889887664 688999999999999999996 4566899999999999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhhccC--CCCCC--ceEEcCCCeeecH
Q 002829 786 DHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN--GEVGP--KTVHIPTGEKLYV 861 (875)
Q Consensus 786 DHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~l~~--~~~g~--~t~~~p~g~~~~i 861 (875)
|||||||+ ||.. ||+|.|++ +|.|.. +.++| +|.+.|+|+.+++
T Consensus 563 DHIsPAG~---------~L~~----------------------rg~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAGP---------WLKY----------------------KGHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccch---------hHhh----------------------cCChhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 99999986 7887 68999998 899975 45677 8888899999999
Q ss_pred HHHHHHHHHh
Q 002829 862 FDAAMVSNMK 871 (875)
Q Consensus 862 ~daa~~y~~~ 871 (875)
||+|++|++.
T Consensus 611 ~~~a~~~~~~ 620 (745)
T TIGR01340 611 PELARDWKAR 620 (745)
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=8e-136 Score=1183.75 Aligned_cols=511 Identities=32% Similarity=0.494 Sum_probs=455.0
Q ss_pred cHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EeCCCCCCC
Q 002829 164 TKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDL-VVDHSVQVD 239 (875)
Q Consensus 164 ~~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~l-viDHsv~~d 239 (875)
.++++||||+.+.... .+.+|.++||||++||+||++++++|++| |.++ ..+|. ++ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p~---~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTEL---SVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCCC---eEEECCCCCCCC
Confidence 3678999999887643 45679999999999999999999998765 7765 34453 44 999988876
Q ss_pred cccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccCeeeecCCCCccc
Q 002829 240 VARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMI 319 (875)
Q Consensus 240 ~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~ 319 (875)
. .||.|+|+|++|++++| |++|+|||+||||||++|+|++ +| +++|||||||||+
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~ 125 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTA 125 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcC
Confidence 3 58999999999999999 8999999999999999996654 33 7899999999999
Q ss_pred CccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChh
Q 002829 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (875)
Q Consensus 320 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 399 (875)
||||+||||||++|++++|+||++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||++
T Consensus 126 GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~ 205 (646)
T PRK07229 126 GGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVP 205 (646)
T ss_pred CcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceecc
Q 002829 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (875)
Q Consensus 400 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 479 (875)
+|||||||++|+|||+|+||+|++|++||+.+||.+++.. + .+|++|.|+++++||||+|||+||
T Consensus 206 ~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDLs~leP~va 270 (646)
T PRK07229 206 ERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE----------L-----LADPDAEYDEVIEIDLSELEPLIA 270 (646)
T ss_pred HHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------c-----cCCCCCCeeEEEEEEccceeeeee
Confidence 9999999999999999999999999999999998764311 1 478899999999999999999999
Q ss_pred CCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002829 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 559 (875)
Q Consensus 480 gP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~l 559 (875)
+|++|||++||+|+++. +|++||||||||||+||+++||++
T Consensus 271 ~P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~i 311 (646)
T PRK07229 271 GPHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASI 311 (646)
T ss_pred cCCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHH
Confidence 99999999999998631 378999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEE
Q 002829 560 VAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAV 639 (875)
Q Consensus 560 Lak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aV 639 (875)
| +|+||+||||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|+++.+ .++++ +|
T Consensus 312 L------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~~--------~~~~~---~v 374 (646)
T PRK07229 312 L------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQAP--------ATGNV---SL 374 (646)
T ss_pred h------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCC--------CCCcE---EE
Confidence 9 7999999999999999999999999999999999999999999999999985432 24565 79
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhh
Q 002829 640 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKS 719 (875)
Q Consensus 640 sSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~ 719 (875)
+|+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |++|||+ ||+.. .++..+|.
T Consensus 375 st~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~~--------~~~~~~~~- 439 (646)
T PRK07229 375 RTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEGF--------AVDDAGII- 439 (646)
T ss_pred EccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCccc--------cCChhhhc-
Confidence 999999999999988999999999999999999999 999999988 9999997 79821 23444443
Q ss_pred hhccccCCCcCCcccCCCCCCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCCh
Q 002829 720 TYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSP 799 (875)
Q Consensus 720 ~Y~~i~~g~~~w~~l~~~~~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~ 799 (875)
..++.|+.++++. ++||+++|+|+++ +++.++|||+++||+||||||||||.
T Consensus 440 ------~~~~~~~~~~~~~---------~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~------ 491 (646)
T PRK07229 440 ------APAEDGSDVEVVR---------GPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA------ 491 (646)
T ss_pred ------CCCcccccccccC---------CCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc------
Confidence 2466788887764 5899999998654 58999999999999999999999997
Q ss_pred HHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhhcc
Q 002829 800 AAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLL 842 (875)
Q Consensus 800 Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~l~ 842 (875)
+||. +|||||.|.|++|.+. +|.+.
T Consensus 492 --~~l~--------------~r~~~~~l~~~~f~~~--~~~f~ 516 (646)
T PRK07229 492 --KWLP--------------YRSNIPNISEFVFEGV--DNTFP 516 (646)
T ss_pred --chhc--------------cCCCHHHHHHHHhccC--Chhhh
Confidence 4443 6899999999999964 56555
No 11
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=9.3e-132 Score=1086.91 Aligned_cols=400 Identities=78% Similarity=1.232 Sum_probs=389.2
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccc
Q 002829 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (875)
Q Consensus 190 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~ 269 (875)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..+++.+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cccccceeeCCCCceeccccccccceeeecC----CCccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEe
Q 002829 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 345 (875)
Q Consensus 270 ~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~----~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l 345 (875)
++|.|++++|||+||||||++|+||++++.+ .|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 9999999999999999999999999999843 589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHH
Q 002829 346 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTL 425 (875)
Q Consensus 346 ~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl 425 (875)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+|+||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccc
Q 002829 426 QYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQV 505 (875)
Q Consensus 426 ~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~ 505 (875)
+++++||||+|||+||+|++|+|++||.
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------- 264 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------- 264 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcC--------------
Confidence 4689999999999999999999999882
Q ss_pred cCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHH
Q 002829 506 GFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 585 (875)
Q Consensus 506 ~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~ 585 (875)
|+|++||||||||||+||+++||++|+|||++||+||+||||++|+|||++
T Consensus 265 -----------------------------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 265 -----------------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred -----------------------------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 137799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHH
Q 002829 586 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 665 (875)
Q Consensus 586 V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lV 665 (875)
|+++|+++||+++|.++||.|.+|||++|+|+++++.+.+++.+.+||+++++|+|+||||+||||+..+.+|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999999889999999999999999999999999999
Q ss_pred HHHHHhCcc
Q 002829 666 VAYALAGTV 674 (875)
Q Consensus 666 aA~AlaG~I 674 (875)
+|+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 12
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=4.7e-131 Score=1142.83 Aligned_cols=505 Identities=31% Similarity=0.487 Sum_probs=437.9
Q ss_pred HHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCccc
Q 002829 166 DDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR 242 (875)
Q Consensus 166 ~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 242 (875)
+++||||+.+.... .+.+|.++||||++||+||++++++|++| |.+ ++.|.+ +.+++||++|....
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d~- 69 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFDF- 69 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCCh-
Confidence 36799999886643 45689999999999999999999998765 443 344543 67899999887532
Q ss_pred chhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCcc
Q 002829 243 SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGL 322 (875)
Q Consensus 243 ~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgL 322 (875)
||.|+|+||+|.+++|+ +.|+|||+||||||++|+|++ +| +++|||||||||+|||
T Consensus 70 --------------~~a~~~~~l~~~a~~~g-i~~~~pg~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~t~Gal 125 (658)
T TIGR01342 70 --------------KNADDHKFLMSAAGKFG-AWFSKPGNGICHNVHKENFAA-----PG----KTLLGSDSHTPTAGGL 125 (658)
T ss_pred --------------hhHHHHHHHHHHHHHhC-CeEECCCCCEEeeEchhhccC-----CC----CEEEecCcCcCCCCcc
Confidence 77899999999999995 689999999999999996554 33 7899999999999999
Q ss_pred ceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhh
Q 002829 323 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRA 402 (875)
Q Consensus 323 Gvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRa 402 (875)
|+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+++||
T Consensus 126 G~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~ 205 (658)
T TIGR01342 126 GMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERA 205 (658)
T ss_pred cccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCC
Q 002829 403 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPK 482 (875)
Q Consensus 403 TIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~ 482 (875)
|||||++|+|||+|+||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|+
T Consensus 206 Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~ 270 (658)
T TIGR01342 206 TITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEPH 270 (658)
T ss_pred hhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCCC
Confidence 9999999999999999999999999999998664321 1 478999999999999999999999999
Q ss_pred CCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHH
Q 002829 483 RPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAK 562 (875)
Q Consensus 483 ~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak 562 (875)
+|||++||+|+++ . +|++||||||||||++||++||++|
T Consensus 271 ~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il-- 309 (658)
T TIGR01342 271 MPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL-- 309 (658)
T ss_pred CCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh--
Confidence 9999999999862 1 2568999999999999999999999
Q ss_pred HHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEecc
Q 002829 563 KACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSG 642 (875)
Q Consensus 563 ~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSg 642 (875)
+|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|+++.+. ++++ +|+|+
T Consensus 310 ----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~~~---~vst~ 374 (658)
T TIGR01342 310 ----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SDGV---SLRSF 374 (658)
T ss_pred ----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CCcE---EEEcc
Confidence 89999999999999999999999999999999999999999999999999965432 3454 79999
Q ss_pred CCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCccccCCCCCceecccC-CCChHHHHHHHHhcCChhhhhhhh
Q 002829 643 NRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDI-WPSNEEIAEVVQSSVLPDMFKSTY 721 (875)
Q Consensus 643 NRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~di-wPs~~Ei~~~~~~~v~~~~f~~~Y 721 (875)
||||+||||+..+.+|||||++|||+||+|+| +|+.. |+.+ +| |+ ||+.++ |+.|...|
T Consensus 375 NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~~-~g------~~~~p~~~~----------p~~~~~~~ 434 (658)
T TIGR01342 375 NRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LADD-EG------DLEAIGFEM----------GEKFPGGY 434 (658)
T ss_pred CCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hccc-cC------cccCCCCCC----------chhhcccc
Confidence 99999999998889999999999999999999 67763 5433 45 45 897763 45566566
Q ss_pred ccccCCCcCCcccCC---CCCCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCC
Q 002829 722 EAITKGNPMWNQLSV---PTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDS 798 (875)
Q Consensus 722 ~~i~~g~~~w~~l~~---~~~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s 798 (875)
.+++ |+.++. ++.++|. |+||++||+|+++. .+|++ ||++++||+||||||+|||.+
T Consensus 435 ~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~---- 494 (658)
T TIGR01342 435 DAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD---- 494 (658)
T ss_pred cccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc----
Confidence 5433 877765 4445555 99999999998773 46777 999999999999999999987
Q ss_pred hHHHHHHHcCCCCCCCcccccCcCCchhhhcccccc
Q 002829 799 PAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFAN 834 (875)
Q Consensus 799 ~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan 834 (875)
|| .| |||.+.+-+-+|..
T Consensus 495 ----~l-----------~~---r~~~~~l~~~~~~~ 512 (658)
T TIGR01342 495 ----IL-----------KF---RSNIEAISEFTLHR 512 (658)
T ss_pred ----cc-----------cc---CCCHHHHhhheeeC
Confidence 33 12 77777766666654
No 13
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=1.2e-121 Score=1029.42 Aligned_cols=452 Identities=25% Similarity=0.372 Sum_probs=394.0
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcc-
Q 002829 164 TKDDVEKIIDWENTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA- 241 (875)
Q Consensus 164 ~~~~iekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 241 (875)
.++.+|||++.+.... .+..+.++|||+++||+|+++++. +||+ +|. +.++|. ++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~---~~~~----~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFE---GLRQ----AGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHH---HHHH----cCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 3678999999887653 455688999999999999999973 3433 463 355555 699999999999763
Q ss_pred -cchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002829 242 -RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (875)
Q Consensus 242 -~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 319 (875)
+..++...|+.+++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 56677888999999999998875 2 246779999999999999 899999 7999999999999
Q ss_pred CccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChh
Q 002829 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (875)
Q Consensus 320 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 399 (875)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceecc
Q 002829 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (875)
Q Consensus 400 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 479 (875)
+|||||||++|+|||+||||+|++|++||+.+++.+. .++|.+++.+|+.. .+|++|.|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va 289 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVT 289 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeec
Confidence 9999999999999999999999999999998876543 37788999999753 589999999999999999999999
Q ss_pred CCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCc--ccccCccEEEEEeecCCCCCChHHHHHH
Q 002829 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP--AELKHGSVVIAAITSCTNTSNPSVMLGA 557 (875)
Q Consensus 480 gP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~--~~l~~g~V~iA~IgSCTN~s~~dlm~AA 557 (875)
+|++|+|++||+++.+++....... ++......++|.|.. ..+.+++|++||||||||||++||++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA 359 (465)
T TIGR00170 290 WGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA 359 (465)
T ss_pred CCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999876655432110 000011122222211 2366889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEE
Q 002829 558 GLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAA 637 (875)
Q Consensus 558 ~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~ 637 (875)
++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.+ ++++
T Consensus 360 ~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~-------~ge~--- 423 (465)
T TIGR00170 360 AVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLP-------EGER--- 423 (465)
T ss_pred HHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCC-------CCCE---
Confidence 998 999999999999999999999999999999999999999999999999999988754 3554
Q ss_pred EEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 638 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 638 aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
+++|+||||+||||+. ..+|||||++||||||+|+|
T Consensus 424 ~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~i 459 (465)
T TIGR00170 424 CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHF 459 (465)
T ss_pred EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCcee
Confidence 5789999999999985 57899999999999999999
No 14
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=1.6e-122 Score=1039.50 Aligned_cols=457 Identities=39% Similarity=0.632 Sum_probs=368.5
Q ss_pred HHHHHHHhcccCCC----CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcc
Q 002829 166 DDVEKIIDWENTSP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (875)
Q Consensus 166 ~~iekil~~~~~~~----~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (875)
|..|||++.+.... .+.+|.++|||+|+||+||++++.+|++|+. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 46788888776532 2457999999999999999999999987643 2345553 79999999999876
Q ss_pred cchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccC
Q 002829 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMID 320 (875)
Q Consensus 242 ~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~G 320 (875)
+.+ |+..++++|+++|+|++|.+++|+...+.|++.||||||++| .|++.|+ ++|||||||||+|
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~G 136 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTYG 136 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchhh
Confidence 433 778899999999999999999986544444445999999999 8889995 7999999999999
Q ss_pred ccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhh
Q 002829 321 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLAD 400 (875)
Q Consensus 321 gLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~d 400 (875)
|||+||||||++|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++
T Consensus 137 alGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~ 216 (465)
T PF00330_consen 137 ALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDD 216 (465)
T ss_dssp GGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHH
T ss_pred hceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccC
Q 002829 401 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISG 480 (875)
Q Consensus 401 RaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAg 480 (875)
|||||||++|+||++||||+|++|++||+.++|.+...++.++|.+.+.|| +|++|.|+++++||||+|||+||+
T Consensus 217 R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va~ 291 (465)
T PF00330_consen 217 RMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVAG 291 (465)
T ss_dssp HHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE-
T ss_pred hhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCcccccccc
Confidence 999999999999999999999999999999999988778888888888886 688999999999999999999999
Q ss_pred CCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCC--CcccccCccEEEEEeecCCCCCChHHHHHHH
Q 002829 481 PKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG--QPAELKHGSVVIAAITSCTNTSNPSVMLGAG 558 (875)
Q Consensus 481 P~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g--~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~ 558 (875)
|++|+|++||+|+.+++.+++... . +......++|++ ...++.+++|++||||||||||+||+++||+
T Consensus 292 P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~ 361 (465)
T PF00330_consen 292 PHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAG 361 (465)
T ss_dssp SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHH
T ss_pred CCCCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHH
Confidence 999999999999999888765421 1 111112344533 3367889999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhcc-CCeEEE
Q 002829 559 LVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITE-NDIVAA 637 (875)
Q Consensus 559 lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~-~~l~~~ 637 (875)
+|+++|+ ++|+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 362 il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~--- 430 (465)
T PF00330_consen 362 ILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV--- 430 (465)
T ss_dssp HHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE---
T ss_pred Hhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce---
Confidence 9988876 799999999999999999999999999999999999999999999999996 3211 223 554
Q ss_pred EEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhC
Q 002829 638 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 672 (875)
Q Consensus 638 aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG 672 (875)
+|+|+||||+||||+..+.+|||||++||||||+|
T Consensus 431 ~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 79999999999999999999999999999999998
No 15
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=3.6e-121 Score=1026.95 Aligned_cols=452 Identities=27% Similarity=0.386 Sum_probs=399.1
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCccc
Q 002829 164 TKDDVEKIIDWENTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR 242 (875)
Q Consensus 164 ~~~~iekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 242 (875)
.++++|||++.+.... ++++|.++|||+++||+||++++.+|++| |. ..+||.++ .+++||++|++.++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4689999999987643 34489999999999999999999988653 53 47888875 68999999999742
Q ss_pred ---chhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcc
Q 002829 243 ---SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTM 318 (875)
Q Consensus 243 ---~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSHTtm 318 (875)
..+....|+.+++++|.+||.+ . .+++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------R--LFDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------e--eeccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3446678888999999998864 1 245678999999999999 8999996 79999999999
Q ss_pred cCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCCh
Q 002829 319 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPL 398 (875)
Q Consensus 319 ~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv 398 (875)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceec
Q 002829 399 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCI 478 (875)
Q Consensus 399 ~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~V 478 (875)
++|||||||++|+||++|+||+|++|++||+.++|.++. ++|.+++..|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 4788999998753 58999999999999999999999
Q ss_pred cCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcc--cccCccEEEEEeecCCCCCChHHHHH
Q 002829 479 SGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLG 556 (875)
Q Consensus 479 AgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~iA~IgSCTN~s~~dlm~A 556 (875)
|+|++|+|++||+|+.+++.+++.... +...+..++|++... .+.+.+|++||||||||||+||+++|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPAR----------RAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 999999999999999988877654320 001112233333221 25678999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEE
Q 002829 557 AGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVA 636 (875)
Q Consensus 557 A~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~ 636 (875)
|++| ||+||+||||++|+|||++|+++|+++||+++|.++||.|.+|||++|+|+++++.+ ++++
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~-------~ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLA-------PGER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCC-------CCCE--
Confidence 9999 999999999999999999999999999999999999999999999999999987643 4565
Q ss_pred EEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 637 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 637 ~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
+|+|+||||+||||+ ...+|||||++||||||+|+|
T Consensus 426 -~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I 461 (471)
T PRK12466 426 -CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHI 461 (471)
T ss_pred -EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEe
Confidence 789999999999999 456799999999999999999
No 16
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=8e-121 Score=1023.83 Aligned_cols=451 Identities=26% Similarity=0.366 Sum_probs=397.4
Q ss_pred HHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcc--
Q 002829 165 KDDVEKIIDWENTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA-- 241 (875)
Q Consensus 165 ~~~iekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~-- 241 (875)
++++|||++.+.+.. .+..+.+++||+++||+|+++++..| +++|. +.++|.. +.+++||++|++..
T Consensus 3 ~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~-------~~~g~--~v~~p~~-~~~~~DH~v~~~~~~~ 72 (466)
T PRK05478 3 KTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGL-------RLAGR--KVRRPDL-TFATMDHNVPTTDRDL 72 (466)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHH-------HHcCC--CccCCCC-eEEEcCCCCCCCcccc
Confidence 678999999987653 45568899999999999999997543 33464 3677774 78899999999985
Q ss_pred cchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccC
Q 002829 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMID 320 (875)
Q Consensus 242 ~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~G 320 (875)
+..++...|+.+++++|.+||.+. ++++.+||+||||||++| +|+++| +++|||||||||+|
T Consensus 73 ~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~G 135 (466)
T PRK05478 73 PIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTHG 135 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCccccc
Confidence 566777889999999999998762 245678999999999999 899999 79999999999999
Q ss_pred ccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhh
Q 002829 321 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLAD 400 (875)
Q Consensus 321 gLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~d 400 (875)
|||+||||||++|++++|+||++||++||||+|+|+|+|++|||||||||+|++.|+.+|++||+|||+||||++||+++
T Consensus 136 alGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~ 215 (466)
T PRK05478 136 AFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEG 215 (466)
T ss_pred hhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccC
Q 002829 401 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISG 480 (875)
Q Consensus 401 RaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAg 480 (875)
|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++..|+.. .+|++|.|+++++||||+|||+||+
T Consensus 216 R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~ 290 (466)
T PRK05478 216 RMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTW 290 (466)
T ss_pred HhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeecC
Confidence 99999999999999999999999999999544322 578899999999754 5799999999999999999999999
Q ss_pred CCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCc--ccccCccEEEEEeecCCCCCChHHHHHHH
Q 002829 481 PKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP--AELKHGSVVIAAITSCTNTSNPSVMLGAG 558 (875)
Q Consensus 481 P~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~--~~l~~g~V~iA~IgSCTN~s~~dlm~AA~ 558 (875)
|++|+|++||+|+.+++.+++..+. +.......+|++.+ ..+.+++|++||||||||||+||+++||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ 360 (466)
T PRK05478 291 GTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAA 360 (466)
T ss_pred CCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHH
Confidence 9999999999999998887765431 11111223333211 13678899999999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEE
Q 002829 559 LVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAA 638 (875)
Q Consensus 559 lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~a 638 (875)
+| ||+||+||||++|+|||++|++||+++||+++|.++||.|.+|||++|+|++++.. .+|++ +
T Consensus 361 il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~---~ 424 (466)
T PRK05478 361 VV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER---C 424 (466)
T ss_pred Hh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---E
Confidence 99 99999999999999999999999999999999999999999999999999975542 36776 7
Q ss_pred EeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 639 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 639 VsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
|+|+||||+||||+.. .+|||||++||||||+|+|
T Consensus 425 vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~I 459 (466)
T PRK05478 425 ASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHF 459 (466)
T ss_pred EEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCc
Confidence 8899999999999665 5899999999999999999
No 17
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=2.9e-120 Score=1004.21 Aligned_cols=409 Identities=33% Similarity=0.538 Sum_probs=365.3
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccc
Q 002829 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (875)
Q Consensus 190 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~ 269 (875)
|||+||+||+++++||++| |. ++.++| .++++||++|++.++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999998654 54 445555 588999999998776543 4667889999999999999
Q ss_pred cccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecC
Q 002829 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (875)
Q Consensus 270 ~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 348 (875)
++| ||+++|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|+++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999993 57786 79999999999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHH
Q 002829 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (875)
Q Consensus 349 evVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 428 (875)
|+|+|+|+|+|++||+||||||+|+++||.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCC
Q 002829 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFK 508 (875)
Q Consensus 429 ~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~ 508 (875)
+.++|+++ ++++++|+ ++.+| +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99998865 78888887 34454 6889999999999999999999999999999999999864321
Q ss_pred CCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002829 509 GFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTK 588 (875)
Q Consensus 509 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~ 588 (875)
.|++ .+|++||||||||||+||+..|| .++|+|++||+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1222 25889999999999999965554 67799999999999 89999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCC-CchhHhhhhccCCeEEEEEeccCCCCCCCCC-CCCCceEecCHHHHH
Q 002829 589 YLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGD-LDESVATAITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 666 (875)
Q Consensus 589 ~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~-l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~g-p~~~~~YLASP~lVa 666 (875)
||+++||+++|.++||.|.+|||++|+|++++ . +.+++.. ++|+|+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~-------~~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKD-------IKKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCcc-------cCCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 2 2234422 368999999999994 445679999999999
Q ss_pred HHHHhCcc
Q 002829 667 AYALAGTV 674 (875)
Q Consensus 667 A~AlaG~I 674 (875)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 18
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=9.5e-116 Score=962.14 Aligned_cols=380 Identities=27% Similarity=0.429 Sum_probs=342.0
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccc
Q 002829 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (875)
Q Consensus 190 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~ 269 (875)
|+++||+||++++. +||+ +|.+ ..+||.. +++++||++|++. ....|+.+++.+|.+||.
T Consensus 1 ~~~~hD~t~p~a~~---~~~~----~g~~-~v~dp~k-~~~~~DH~vp~~~-----~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLRE----AGRE-KVWDPEK-IVAVFDHNVPTPD-----IKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHH---HHHH----hCCc-ccCCCCc-eEEEcCCCCCCCC-----HHHHHHHHHHHHHHHHhC------
Confidence 68999999999973 4444 3432 2445543 6999999999983 345666677777777553
Q ss_pred cccccceeeCC-CCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeec
Q 002829 270 SAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 347 (875)
Q Consensus 270 ~~f~ni~vvpP-G~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~v 347 (875)
++++++ |+||||||++| +|++.| +++|||||||||+||||+||||||++|++++|+||++||++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 234556 89999999999 788889 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHH
Q 002829 348 PGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQY 427 (875)
Q Consensus 348 PevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~Y 427 (875)
||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccC
Q 002829 428 LKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 507 (875)
Q Consensus 428 L~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~ 507 (875)
|+.++|.+. + .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~------------ 258 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG------------ 258 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCC------------
Confidence 999987631 1 12 4799999999999999999999999999999999999863
Q ss_pred CCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002829 508 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVT 587 (875)
Q Consensus 508 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~ 587 (875)
. +|++||||||||||+||+++||++| ||+||+||||++|+|||++|+
T Consensus 259 --~-------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 259 --I-------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred --c-------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 0 3779999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002829 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (875)
Q Consensus 588 ~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA 667 (875)
++|+++||+++|+++||.|.+|||++|+|+++++. .+||+ +|+|+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987763 46776 788999999999999888999999999999
Q ss_pred HHHhCcc
Q 002829 668 YALAGTV 674 (875)
Q Consensus 668 ~AlaG~I 674 (875)
+||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 19
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=2.6e-115 Score=1011.41 Aligned_cols=427 Identities=28% Similarity=0.431 Sum_probs=365.0
Q ss_pred HHHHHHHHhccc-----CC--CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCC
Q 002829 165 KDDVEKIIDWEN-----TS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQ 237 (875)
Q Consensus 165 ~~~iekil~~~~-----~~--~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~ 237 (875)
++.+|||++.+. +. ..+.+|.++||++|+||.|+++++ +| .++|.+ ..++|.. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~-------~~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KF-------MGIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HH-------HHcCCC-ccCCCCC-EEEEcCCCCC
Confidence 567899998876 22 145679999999999999999853 34 236764 5777864 7889999999
Q ss_pred CCcccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCCC
Q 002829 238 VDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHT 316 (875)
Q Consensus 238 ~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSHT 316 (875)
.... ..+..++..++|+| +| +++|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~--~~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSD--KNLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCH--HHHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 8753 22233333333333 34 578899999999999999 8999996 679999999
Q ss_pred cccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEec--CcCC
Q 002829 317 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYG--EGMG 394 (875)
Q Consensus 317 tm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~G--pGv~ 394 (875)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCChhhhhhhhccccccCceeeeecCChHHHHHHhhcCCCch--------hHHHHHHHHH---HccccccCCCCCCCCcc
Q 002829 395 QLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVSMIEEYLR---ANKMFVDYNEPEQERSY 463 (875)
Q Consensus 395 ~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~--------~~~l~e~y~k---~~~l~~~~~~~D~~a~Y 463 (875)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...|. +..+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999876311 0011122211 011111 2358999999
Q ss_pred cEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEee
Q 002829 464 SSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAIT 543 (875)
Q Consensus 464 ~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~Ig 543 (875)
+++++||||+|+|+||+|++|++++||+++... | -+|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------------------------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------------------------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C-------------------------ceeeeEEEe
Confidence 999999999999999999999999999987310 1 136799999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcC---CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCC
Q 002829 544 SCTNTSNPSVMLGAGLVAKKACELG---LEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGD 620 (875)
Q Consensus 544 SCTN~s~~dlm~AA~lLak~A~~kG---lkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~ 620 (875)
||||+|++|+++||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.++||.|..+||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888773 7899999999999999999999999999999999999999999999999977
Q ss_pred CchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 621 LDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 621 l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
+.+ ++++ +|+|+||||+||||+..+.+|||||++||||||+|+|
T Consensus 409 ~~~-------~gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~I 452 (712)
T TIGR00139 409 LLE-------PGEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452 (712)
T ss_pred CCC-------CCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCcc
Confidence 653 4565 7899999999999988889999999999999999999
No 20
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=1.4e-114 Score=958.92 Aligned_cols=405 Identities=28% Similarity=0.431 Sum_probs=362.4
Q ss_pred HHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccc
Q 002829 166 DDVEKIIDWENTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARS 243 (875)
Q Consensus 166 ~~iekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 243 (875)
+++|||++.+.+.. .+..+.+++|++++||.|+++++..| +++|.+ ..+||.. +.+++||++|+...
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~-------~~~g~~-~v~~P~~-v~~~~DH~~p~~~~-- 69 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRL-------EEYGID-KVFDPER-IVIVVDHVVPASTI-- 69 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHH-------HHcCCC-cCCCCCc-EEEEcCCCCCCCCh--
Confidence 36899999887642 45568899999999999999997655 445653 5777765 78999999998864
Q ss_pred hhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCcc
Q 002829 244 ENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGL 322 (875)
Q Consensus 244 ~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgL 322 (875)
..+..++..++|.| ++++. +|++||+|||||+++| +|++.| +++|||||||||+|||
T Consensus 70 ~~a~~~~~~r~fa~--------~~gi~-----~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Gal 127 (412)
T TIGR01343 70 KAAEMQKLAREFVK--------KTGIK-----HFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGAL 127 (412)
T ss_pred hHHHHHHHHHHHHH--------HcCCc-----eeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCch
Confidence 34446666777776 33332 2689999999999999 899999 6899999999999999
Q ss_pred ceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhh
Q 002829 323 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRA 402 (875)
Q Consensus 323 Gvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRa 402 (875)
|+||||||++|++++|++|++||++||+|+|+|+|+|++||+||||+|+|++.|+.+|++||+|||+|||+++||+++|+
T Consensus 128 Ga~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ 207 (412)
T TIGR01343 128 GAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERM 207 (412)
T ss_pred hheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCC
Q 002829 403 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPK 482 (875)
Q Consensus 403 TIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~ 482 (875)
|||||++|+||++|+||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|+
T Consensus 208 ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P~ 271 (412)
T TIGR01343 208 TLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAPH 271 (412)
T ss_pred hhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecCC
Confidence 99999999999999999999999999998765321 12 479999999999999999999999999
Q ss_pred CCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHH
Q 002829 483 RPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAK 562 (875)
Q Consensus 483 ~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak 562 (875)
+|+|++||+++.+ . +|+|||||||||||++|+++||++|
T Consensus 272 ~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~il-- 310 (412)
T TIGR01343 272 NVDNVHPVSEVEG--------------I-------------------------EVDQVFIGSCTNGRIEDLRVAAKIL-- 310 (412)
T ss_pred CCCcEEEhHHhCC--------------C-------------------------eeeEEEEecCCCCChHHHHHHHHHH--
Confidence 9999999999762 1 2679999999999999999999999
Q ss_pred HHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEecc
Q 002829 563 KACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSG 642 (875)
Q Consensus 563 ~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSg 642 (875)
||+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.... .+|++ +|+|+
T Consensus 311 ----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l-------~~ge~---~vsT~ 376 (412)
T TIGR01343 311 ----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVL-------APGEV---CISTS 376 (412)
T ss_pred ----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEec
Confidence 89999999999999999999999999999999999999999999999999864432 24665 78999
Q ss_pred CCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 643 NRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 643 NRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
||||+||||+..+.+|||||++||||||+|+|
T Consensus 377 NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 408 (412)
T TIGR01343 377 NRNFKGRMGDPNAEIYLASPATAAASAVKGRI 408 (412)
T ss_pred CCCCCCCCCCCCCcEEECCHHHHHHHHhCccc
Confidence 99999999988889999999999999999999
No 21
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.5e-114 Score=950.54 Aligned_cols=379 Identities=36% Similarity=0.576 Sum_probs=347.7
Q ss_pred ceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhcc
Q 002829 189 ARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWG 268 (875)
Q Consensus 189 drVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~ 268 (875)
|++++||.|+++++..| +++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~-------~~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQF-------EAMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHH-------HHcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 78999999999998655 456764 355663 7899999999864 2677888899999
Q ss_pred ccccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeec
Q 002829 269 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 347 (875)
Q Consensus 269 ~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~v 347 (875)
.++| +|++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 8888 6999999999999999994 4556 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHH
Q 002829 348 PGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQY 427 (875)
Q Consensus 348 PevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~Y 427 (875)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccC
Q 002829 428 LKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 507 (875)
Q Consensus 428 L~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~ 507 (875)
|+.+||.+++.. + .+|++|.|+++++||||+|||+||+|++|+|++||+++.+
T Consensus 205 l~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g------------ 257 (380)
T cd01585 205 LAAQGREDDWVE----------L-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG------------ 257 (380)
T ss_pred HHhcCCchhccc----------c-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC------------
Confidence 999998653211 2 4789999999999999999999999999999999999862
Q ss_pred CCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002829 508 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVT 587 (875)
Q Consensus 508 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~ 587 (875)
. +|++||||||||||+||+++||++| ||+||+||||++|+|||++|+
T Consensus 258 --------------------~-------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 258 --------------------I-------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred --------------------c-------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 0 3789999999999999999999999 899999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002829 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (875)
Q Consensus 588 ~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA 667 (875)
++|+++||+++|+++||.|.+|||++|+|+++.+. +|++ +|+|+||||+||||+..+.+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAPP--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCCC--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 99999999999999999999999999999976542 4665 789999999999998888999999999999
Q ss_pred HHHhCcc
Q 002829 668 YALAGTV 674 (875)
Q Consensus 668 ~AlaG~I 674 (875)
+||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 22
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=6.2e-114 Score=1004.19 Aligned_cols=528 Identities=22% Similarity=0.298 Sum_probs=409.8
Q ss_pred cHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccc
Q 002829 164 TKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARS 243 (875)
Q Consensus 164 ~~~~iekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 243 (875)
+++++||||+.+.+...+..|.+++|++++||.|++.++..|. ++|.+ ++ | +|+.+++||+++....++
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~-------~~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAK-------ASGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHH-------HcCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 4578999999997765566799999999999999998876553 35874 45 4 689999999999875443
Q ss_pred hhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCcc
Q 002829 244 ENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGL 322 (875)
Q Consensus 244 ~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgL 322 (875)
. |.++|.|++...++|. +.|+|||+||||||++|+|+ .| +++|||||||| +|||
T Consensus 103 ~-------------n~~~~~~~~~~a~k~G-i~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 I-------------NEDDHVFGLSAAQKYG-GIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred c-------------cHHHHHHHHHHHHHcC-CcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cchh
Confidence 3 2234445544445553 57899999999999999554 46 68999999996 8999
Q ss_pred ceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCc-cceEEEEecCcCCCCChhhh
Q 002829 323 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGV-VGKFVEFYGEGMGQLPLADR 401 (875)
Q Consensus 323 Gvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~Gv-vGk~VEF~GpGv~~LSv~dR 401 (875)
|+|||||||+|++.+|+|+++|+++||+|+|+|+|+|++||+||||||+|++.|+..|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCC
Q 002829 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGP 481 (875)
Q Consensus 402 aTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 481 (875)
||||||++|+|||+|+||+|++|++||+.+||.+++.. | .+|++|.|+++++||||+|||+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~----------l-----~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE----------L-----NPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee----------c-----cCCCCCCeeEEEEEEcccceeeecCC
Confidence 99999999999999999999999999999998764211 1 47899999999999999999999999
Q ss_pred CCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCccccc--CccEEEEEeecCCCCCChHHHHHHHH
Q 002829 482 KRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGL 559 (875)
Q Consensus 482 ~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~--~g~V~iA~IgSCTN~s~~dlm~AA~l 559 (875)
++|+|++||+|+.+++.+++... +..+..+ ......++. +. +|. .-.|+|||||||||||++|+++||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~-~~--ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSL-LD--KIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhccccc-cc--cccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999998888766542 1111110 000011111 11 112 23689999999999999999999999
Q ss_pred HHHHHHhcCCccC-CceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEE
Q 002829 560 VAKKACELGLEVK-PWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAA 638 (875)
Q Consensus 560 Lak~A~~kGlkV~-p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~a 638 (875)
| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+ .++++ +
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~~--------~~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDTP--------ANNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCcC--------CCCCE---E
Confidence 9 899997 6799999999999999999999999999999999999999999986442 24565 7
Q ss_pred EeccCCCCCCCCCCCCCc-----eEecCHHHHHHHHHh-CccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcC
Q 002829 639 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSV 712 (875)
Q Consensus 639 VsSgNRNFeGR~gp~~~~-----~YLASP~lVaA~Ala-G~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v 712 (875)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|-..+. ++ |..+ ..+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p~---~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVPE---YAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCCC---ccc
Confidence 899999999999998887 677778989999998 6985 4432221 00 1111 113
Q ss_pred ChhhhhhhhccccCCC-cCCcccCCCCCCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCcc-ccccCC
Q 002829 713 LPDMFKSTYEAITKGN-PMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSIT-TDHISP 790 (875)
Q Consensus 713 ~~~~f~~~Y~~i~~g~-~~w~~l~~~~~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiT-TDHISP 790 (875)
+..+|.. .++.+. +.-..+++. - ++.|+..|-++.+ .+-..++|++++||+|| ||||+|
T Consensus 497 ~~~~y~~---~~~~~~~~~~~~~~~~------~---gPni~~~p~~~~l-------~~~~~~kv~~k~~D~itTTD~i~p 557 (751)
T PRK11413 497 DVTPYKN---RVYQGFGKGATQQPLI------Y---GPNIKDWPEMGAL-------TDNILLKVCSKILDPVTTTDELIP 557 (751)
T ss_pred Ccccccc---ccccCCCCCCCcceEE------e---CcCCCCCCCCCCC-------CCcEEEEEEEEeCCCCcccccccc
Confidence 3333321 111111 110111111 1 2245555554432 34446789999999996 999999
Q ss_pred CCCCCCCC----hHHHHHHHc
Q 002829 791 AGSIHKDS----PAAKYLLER 807 (875)
Q Consensus 791 AG~I~~~s----~Ag~yL~~~ 807 (875)
||.+.+-- -..+|..++
T Consensus 558 aG~~l~~Rsn~~~is~~~~~~ 578 (751)
T PRK11413 558 SGETSSYRSNPLGLAEFTLSR 578 (751)
T ss_pred CCCccccccCHHHHhhhhccc
Confidence 99775433 335555543
No 23
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=3.9e-114 Score=955.44 Aligned_cols=404 Identities=27% Similarity=0.407 Sum_probs=364.0
Q ss_pred HHHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCccc
Q 002829 165 KDDVEKIIDWENTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR 242 (875)
Q Consensus 165 ~~~iekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 242 (875)
++++|||++.+.+.. .+..+.+++|++++||.|+++++..| +++| .+.+||.. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~-------~~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETL-------RELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHH-------HHcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 467899999987643 45578899999999999999997655 4456 56788876 789999999998653
Q ss_pred chhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCc
Q 002829 243 SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDG 321 (875)
Q Consensus 243 ~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~Gg 321 (875)
.+..++..++|.| ++ ++++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~--------~~------gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAK--------EH------GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHH--------Hc------CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 3344555555555 22 466789999999999999 899999 689999999999999
Q ss_pred cceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhh
Q 002829 322 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADR 401 (875)
Q Consensus 322 LGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dR 401 (875)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCC
Q 002829 402 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGP 481 (875)
Q Consensus 402 aTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 481 (875)
||||||++|+||++|+||+|++|++||+.++|.+.. .| .+|++|.|+++++|||++|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFR------------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccc------------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 999999999999999999999999999999875421 22 47999999999999999999999999
Q ss_pred CCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 002829 482 KRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 561 (875)
Q Consensus 482 ~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLa 561 (875)
++|+|++|++++.+ . +|++||||||||||++|+++||++|
T Consensus 270 ~~P~nv~~v~~~~~--------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEG--------------T-------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhcc--------------c-------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 99999999999863 0 2679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEec
Q 002829 562 KKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLS 641 (875)
Q Consensus 562 k~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsS 641 (875)
||+||+|+||++|+|||++|+++|+++||+++|.++||.|.+|||++|+|++..+. .+|++ +|+|
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999985543 35676 7899
Q ss_pred cCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 642 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 642 gNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~i 407 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYI 407 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCcc
Confidence 999999999988889999999999999999999
No 24
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=6.8e-114 Score=954.92 Aligned_cols=406 Identities=30% Similarity=0.447 Sum_probs=362.5
Q ss_pred cHHHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcc
Q 002829 164 TKDDVEKIIDWENTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (875)
Q Consensus 164 ~~~~iekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (875)
.++.+||||+.+.+.. .+..+.+++|++++||.|+++++..| +++|.+ ..+||.. +.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~-------~~~g~~-~v~~P~~-~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEF-------EKIGGD-KVFDPSK-IVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHH-------HHcCCC-ccCCCCc-EEEECCCCCCCCCh
Confidence 3678999999987653 45568899999999999999998655 334654 4677774 78999999999864
Q ss_pred cchhHHHhchHHHHHHhhhhhhhhhccccccccce-eeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002829 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (875)
Q Consensus 242 ~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~-vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 319 (875)
..+..++..++|.| +++ ++ +++||+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~--------~~g------i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAK--------EQG------IPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHH--------HcC------CcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 34446666666666 233 44 678999999999999 888999 6899999999999
Q ss_pred CccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChh
Q 002829 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (875)
Q Consensus 320 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 399 (875)
||||+||||||++|++++|++|++|+++||+|+|+|+|+|++||+||||+|+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceecc
Q 002829 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (875)
Q Consensus 400 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 479 (875)
+|+|||||++|+||++|+||+|++|++||+.+++.+. .| ..+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~-------------~~---l~~D~~a~Y~~~i~iDls~leP~va 271 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY-------------KP---WKSDEDAEYEEVYEIDLSKLEPQVA 271 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhccccc-------------cc---ccCCCCCCEEEEEEEEcccceeeee
Confidence 9999999999999999999999999999999854331 12 1478999999999999999999999
Q ss_pred CCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002829 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 559 (875)
Q Consensus 480 gP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~l 559 (875)
+|++|+|++||+++++ . +|++||||||||||+||+++||++
T Consensus 272 ~P~~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~eDl~~aA~i 312 (418)
T PRK00402 272 APHLPDNVKPVSEVEG--------------T-------------------------KVDQVFIGSCTNGRLEDLRIAAEI 312 (418)
T ss_pred cCCCccceeEchhhCC--------------c-------------------------eeeEEEEecCCCCChHHHHHHHHH
Confidence 9999999999999863 0 267999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEE
Q 002829 560 VAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAV 639 (875)
Q Consensus 560 Lak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aV 639 (875)
| ||+||+|+||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|++.... .+|++ +|
T Consensus 313 l------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~v 376 (418)
T PRK00402 313 L------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVL-------APGEV---CL 376 (418)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EE
Confidence 9 99999999999999999999999999999999999999999999999999764432 24665 78
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 640 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 640 sSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
+|+||||+||||+..+.+|||||++||||||+|+|
T Consensus 377 sT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~i 411 (418)
T PRK00402 377 STTNRNFKGRMGSPESEVYLASPAVAAASAVTGKI 411 (418)
T ss_pred EecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCee
Confidence 99999999999988889999999999999999999
No 25
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.2e-112 Score=943.53 Aligned_cols=408 Identities=31% Similarity=0.453 Sum_probs=362.3
Q ss_pred HHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcc
Q 002829 165 KDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (875)
Q Consensus 165 ~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (875)
++++|||++.+.+.. .+..|.+++|++++||.|++.++..| +++|. +..+||.. +.+++||++|+...
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f-------~~~g~-~~V~dp~~-v~~~~DH~vpa~~~ 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAF-------KEYGG-KKVFDPDR-VALVPDHFTPNKDI 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHH-------HHcCC-CcCCCCCC-EEEEeCCCCCCCCH
Confidence 367899999987643 45578899999999999999987654 44565 45778875 78999999999853
Q ss_pred cchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCC-ceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002829 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (875)
Q Consensus 242 ~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~-GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 319 (875)
..+..++..++|.| ++++++ |+++|. |||||+++| +|++.| +++|||||||||+
T Consensus 72 --~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 72 --KSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred --HHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 45556777777777 344433 467885 999999999 999999 6899999999999
Q ss_pred CccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChh
Q 002829 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (875)
Q Consensus 320 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 399 (875)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceecc
Q 002829 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (875)
Q Consensus 400 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 479 (875)
+|||||||++|+||++|+||+|++|++||+.+++.+ ++ .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999765432 11 12 479999999999999999999999
Q ss_pred CCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002829 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 559 (875)
Q Consensus 480 gP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~l 559 (875)
+|++|+|++||+|++. .|. +|++||||||||||++||++||++
T Consensus 272 ~P~~pdnv~~v~e~~~------------------------------~g~-------~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGK------------------------------EEI-------KIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhccc------------------------------ccC-------ccCeEEEEcCCCCChHHHHHHHHH
Confidence 9999999999999862 011 367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEE
Q 002829 560 VAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAV 639 (875)
Q Consensus 560 Lak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aV 639 (875)
| ||+||+++||++|+|||++|+++|+++||+++|.++||.|.+|||++|+|++.... .++++ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l-------~~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGIL-------AEGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EE
Confidence 9 99999999999999999999999999999999999999999999999999874432 24565 78
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 640 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 640 sSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
+|+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 413 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYI 413 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCc
Confidence 99999999999866678999999999999999999
No 26
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-110 Score=932.96 Aligned_cols=560 Identities=30% Similarity=0.477 Sum_probs=473.2
Q ss_pred ceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhh
Q 002829 182 VEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQER 261 (875)
Q Consensus 182 ~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Er 261 (875)
..+.++||||+|||.|++|++++|.. .|... . .+|..++|||.+.+...+..| +.+.-+.|+|.
T Consensus 83 ~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~k-v---avPstIhCdhli~a~~gg~~D-----l~~a~~~Nkev 146 (778)
T KOG0453|consen 83 SYLKLRPDRVAMQDASAQMALLQFMS-------SGLKK-V---AVPSTIHCDHLIEAQVGGDKD-----LQRASDLNKEV 146 (778)
T ss_pred ceEEEcccceecccchhhHHHHHHHh-------cCccc-c---cCCceEEecceeeeccCCcch-----hhhhhhhhHHH
Confidence 46899999999999999999999854 46553 2 356799999999988766554 55667899999
Q ss_pred hhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccCccceeeccCCHHHHHHHHcC
Q 002829 262 FAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 340 (875)
Q Consensus 262 y~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg 340 (875)
|.||..+.++| +|.||+||+||+|||+||+ ++||+ ++|||||||+++||||+|++||||+||+++|++
T Consensus 147 ydfl~saakky-gi~Fw~pGsGIiHQIvlEn----------YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA~ 215 (778)
T KOG0453|consen 147 YDFLESAAKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMAT 215 (778)
T ss_pred HHHHHHHHHhc-CCCccCCCCceeeeeeeec----------ccCCcceEEeccCCCCCCCccceeeeccccchHHHHhcC
Confidence 99999999888 6999999999999999994 56785 789999999999999999999999999999999
Q ss_pred CeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecC
Q 002829 341 QPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPV 420 (875)
Q Consensus 341 ~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~ 420 (875)
+||.+++|+++||+|+|+|+.|+++|||||++.+.|..+|++|++||||||||.+||.+.|+|||||++|.|||+++||.
T Consensus 216 ~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP~ 295 (778)
T KOG0453|consen 216 QPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFPY 295 (778)
T ss_pred CCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHH
Q 002829 421 DHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHAC 500 (875)
Q Consensus 421 De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~ 500 (875)
|+.+++||+.|||.+. .+..++|.++ +. .+|++|.|+++|||||++|+|+|.||++|+-..|++++.+.-.
T Consensus 296 n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~-- 366 (778)
T KOG0453|consen 296 NERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE-- 366 (778)
T ss_pred CHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh--
Confidence 9999999999999874 3444555554 22 5799999999999999999999999999998899998874211
Q ss_pred hhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEe
Q 002829 501 LENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLA 580 (875)
Q Consensus 501 l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~Vktsva 580 (875)
-+|||.+ |-.++||||||+|++|+-.+|.++ ++|..+|+|.+ |-+.|+
T Consensus 367 ------------------------kn~wp~~-----i~~gligSCTNSsyeDm~raa~iv-~~a~~~glk~~--v~F~Vt 414 (778)
T KOG0453|consen 367 ------------------------KNGWPIK-----IKVGLIGSCTNSSYEDMSRAADIV-KQAKGKGLKPK--VPFYVT 414 (778)
T ss_pred ------------------------hcCCcee-----eeeeEEEeecCccHHHHHHHHHHH-HHHHhcCCCCC--cceEec
Confidence 1567664 457899999999999988777754 99987777655 999999
Q ss_pred cCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCC-CceEe
Q 002829 581 PGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLT-RANYL 659 (875)
Q Consensus 581 PGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~-~~~YL 659 (875)
|||.+|...++|.|+++.|+++|+.+.+.+||||||.+..-+ |++||.. +.|+|.||||.||++.+. ...||
T Consensus 415 pgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~d------vk~GE~n-tivts~NRNFtgRnd~np~t~afl 487 (778)
T KOG0453|consen 415 PGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRKD------IKKGEKN-TIVTSYNRNFTGRNDANPATHAFL 487 (778)
T ss_pred cChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccccc------ccCCCcC-ceeeeecccccccCCCCcchhhcc
Confidence 999999999999999999999999999999999999985511 3344442 238899999999997665 45799
Q ss_pred cCHHHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCC-
Q 002829 660 ASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPT- 738 (875)
Q Consensus 660 ASP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~- 738 (875)
+||++|+|.|++|++.++++++.| .+.+|+.|.|+. |..+|+.+ +.++| |....++.+.+.
T Consensus 488 tSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~------------g~~ty~ap~~~~~ 549 (778)
T KOG0453|consen 488 TSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDP------------GQDTYQAPPSSSS 549 (778)
T ss_pred cCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCC------------CcccccCCCCCCC
Confidence 999999999999999999999999 788999999999 99988755 22333 233333332222
Q ss_pred CCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccc
Q 002829 739 STLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYG 818 (875)
Q Consensus 739 ~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsyg 818 (875)
...+..||+|..+|....|+ +|...|+++..||+++..+|||||||-||+| |+.
T Consensus 550 ~~~v~v~p~s~rlqlLepF~-----~w~gkd~edl~ilikv~gkCttDhIsaaGpw---------lkY------------ 603 (778)
T KOG0453|consen 550 VVEVDVDPTSDRLQLLEPFD-----KWDGKDLEDLKILIKVKGKCTTDHISAAGPW---------LKY------------ 603 (778)
T ss_pred cceeecCCcccchhhcCCCC-----cccccccccceEEEEEecccCccccccCCcc---------eec------------
Confidence 36778899999999999985 6888999999999999999999999999976 555
Q ss_pred cCcCCchhhhccccccchhhhhccCC--CCCC---ceEEcCCCeeecHHHHHHHHHHh
Q 002829 819 SRRGNDEVMARGTFANIRIVNKLLNG--EVGP---KTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 819 sRRgNhevm~RgtFan~r~~N~l~~~--~~g~---~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
||...||. .|.|... +|-| .-..+-+||-.+|-+.|++|+++
T Consensus 604 ----------~Ghl~nis-nn~~igain~En~e~n~~~n~~~ge~~~vp~~~~~yk~~ 650 (778)
T KOG0453|consen 604 ----------RGHLENIS-NNDLIGAINKENGEANCVKNYLTGEFGTVPDTARDYKKH 650 (778)
T ss_pred ----------cchhhhcc-cchhhhhcchhhhhhhhhhhccccccCCcCchhhhHHhc
Confidence 66666764 5554421 1222 22333478888888999999876
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-108 Score=889.60 Aligned_cols=409 Identities=29% Similarity=0.435 Sum_probs=360.2
Q ss_pred HHHHHHHHhcccCCC--C-cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcc
Q 002829 165 KDDVEKIIDWENTSP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA 241 (875)
Q Consensus 165 ~~~iekil~~~~~~~--~-~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 241 (875)
++..|||++.+.+.. . +..+-.++|++|.||.|+|.++.- ++++|. +.++|.. +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~-------lr~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEG-------LREAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHH-------HHHhCC--cccCccc-eEEEecCCCCCccH
Confidence 688999999987653 2 234678999999999999998743 345565 4677775 78899999999865
Q ss_pred cchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCC-CceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002829 242 RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (875)
Q Consensus 242 ~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG-~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 319 (875)
. .+.+++..++|.+ + +++ +.|++.| +||||||.+| +|++.| ++|||+||||||+
T Consensus 73 ~--~a~~~~~lr~~~k---e-----~Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 K--AAEQQKELRENAK---E-----FGI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred H--HHHHHHHHHHHHH---H-----hCC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 3 3345555554444 2 243 3456678 9999999999 999999 6899999999999
Q ss_pred CccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChh
Q 002829 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (875)
Q Consensus 320 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 399 (875)
||||+||+|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|++|||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceecc
Q 002829 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCIS 479 (875)
Q Consensus 400 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 479 (875)
+||||||||+|+||++|+|+||++|++||+... ++...|+.. .+|+||.|+++++||+++|||+|+
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 999999999999999999999999999999322 222345443 589999999999999999999999
Q ss_pred CCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 002829 480 GPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 559 (875)
Q Consensus 480 gP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~l 559 (875)
+|++|+|+++++++.++ . -+|+++|||||||+|++||++||.+
T Consensus 275 ~p~~p~nv~~v~e~~~~--------------~-----------------------i~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPD--------------P-----------------------IKIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCC--------------c-----------------------eeeceEEEeccCCccHHHHHHHHHH
Confidence 99999999999998631 0 1377999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEE
Q 002829 560 VAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAV 639 (875)
Q Consensus 560 Lak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aV 639 (875)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|++.+.. .+||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL-------~~gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVL-------GPGER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcC-------CCCCE---Ee
Confidence 9 89999999999999999999999999999999999999999999999999985553 35676 78
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 640 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 640 sSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
||+||||+||||+..+.+||+||+++||+|++|+|
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i 416 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEI 416 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEe
Confidence 99999999999977788999999999999999998
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.6e-105 Score=890.26 Aligned_cols=402 Identities=25% Similarity=0.367 Sum_probs=350.3
Q ss_pred HHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccch
Q 002829 168 VEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSE 244 (875)
Q Consensus 168 iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~ 244 (875)
+||||+.+.+.. .+..|.+++|++++||.||++++..| +++|. +++||.. +.+++||++|+... .
T Consensus 2 ~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f-------~~~~~--~v~d~~~-~v~~~DH~~p~~~~--~ 69 (436)
T cd01581 2 AQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KELAC--LGFSADL-VMQSFCHTAAYPKP--V 69 (436)
T ss_pred hHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHH-------HHcCC--cccCCcc-EEEEcCCCCCCCCH--H
Confidence 699999987643 45678899999999999999998765 34454 4677764 78999999999864 3
Q ss_pred hHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccCccc
Q 002829 245 NAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLG 323 (875)
Q Consensus 245 ~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLG 323 (875)
.+..++..++|.++ ++ ++|++||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 ~a~~~~~~r~fa~~--------~g------i~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga-- 122 (436)
T cd01581 70 DVKTHRTLPDFISN--------RG------GVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG-- 122 (436)
T ss_pred HHHHHHHHHHHHHH--------cC------CcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc--
Confidence 44567778888874 23 56789999999999888 35786 57999999999986
Q ss_pred eeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHH-HH-----------hcCccceEEEEecC
Q 002829 324 VAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQM-LR-----------KHGVVGKFVEFYGE 391 (875)
Q Consensus 324 vlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~-Lr-----------~~GvvGk~VEF~Gp 391 (875)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+.. |+ .+|++||+|||.
T Consensus 123 -~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~-- 199 (436)
T cd01581 123 -ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE-- 199 (436)
T ss_pred -eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--
Confidence 799999999999999999999999999999999999999999999987643 33 334689999995
Q ss_pred cCCCCChhhhhhhhccccccCceeeeecCChHH-HHHHhhc----------CCCc-----hhHHHHHHHHHHccccccCC
Q 002829 392 GMGQLPLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----ETVSMIEEYLRANKMFVDYN 455 (875)
Q Consensus 392 Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T-l~YL~~t----------gR~~-----~~~~l~e~y~k~~~l~~~~~ 455 (875)
|+++||+++|||||||++|+|||+|+||+|++| ++||+.+ ||++ +..++++.|.+++.+|
T Consensus 200 Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (436)
T cd01581 200 GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL---- 275 (436)
T ss_pred CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc----
Confidence 599999999999999999999999999999988 8999996 5542 3456778888888777
Q ss_pred CCCCCCcccEEEEEEcCCc-ceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccC
Q 002829 456 EPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKH 534 (875)
Q Consensus 456 ~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~ 534 (875)
.+|++|.|+++++||||+| ||+||+|++|+|++||+++.+ .
T Consensus 276 ~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g--------------~------------------------ 317 (436)
T cd01581 276 EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG--------------K------------------------ 317 (436)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC--------------C------------------------
Confidence 4789999999999999999 999999999999999999763 1
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccc
Q 002829 535 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTC 614 (875)
Q Consensus 535 g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtC 614 (875)
+|+++||||||| +++|++.||.+| ||+++++ ||++|+|||++|+++|+++|++++|+++||.|.+||||+|
T Consensus 318 -~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~~-vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C 388 (436)
T cd01581 318 -KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 (436)
T ss_pred -ccceEEEecCCC-CHHHHHHHHHHH------cCCCCCC-CCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccc
Confidence 256999999999 999999999999 8999754 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 615 IGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 615 iGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
+|+.+.+ .+|++ +|+|+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 389 ~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 389 MGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred cCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 9985543 46777 789999999999999 678999999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1e-104 Score=867.33 Aligned_cols=361 Identities=31% Similarity=0.487 Sum_probs=320.5
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccc
Q 002829 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (875)
Q Consensus 190 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~ 269 (875)
.+++||.|+++++. | .++|. ++.+||.. +.+++||++|+... ..+..++..++|.| |
T Consensus 1 ~~~~hd~t~p~~~~-~-------~~~g~-~~v~~p~~-~~~~~DH~vp~~~~--~~~~~~~~lr~~ak--------~--- 57 (363)
T cd01582 1 HCMTHDNSWPVALK-F-------MSIGA-TKIHNPDQ-IVMTLDHDVQNKSE--KNLKKYKNIESFAK--------K--- 57 (363)
T ss_pred CeeEEeCcHHHHHH-H-------HHcCC-CccCCCCC-EEEEcCCCCCCCCH--HHHHHHHHHHHHHH--------H---
Confidence 37999999998754 4 23565 46788874 78899999999864 33445555555555 2
Q ss_pred cccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecC
Q 002829 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (875)
Q Consensus 270 ~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 348 (875)
| ++++++||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 58 --~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 58 --H-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred --h-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 2 467899999999999999 8999996 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHH
Q 002829 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (875)
Q Consensus 349 evVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 428 (875)
|+|+|+|+|+|++||+||||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCC
Q 002829 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFK 508 (875)
Q Consensus 429 ~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~ 508 (875)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 458999999999999999999999999997420
Q ss_pred CCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcC-CccCCceeEEEecCcHHHH
Q 002829 509 GFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LEVKPWVKTSLAPGSGVVT 587 (875)
Q Consensus 509 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kG-lkV~p~VktsvaPGS~~V~ 587 (875)
| -+|++||||||||||++|+++||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ------------------~-------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 ------------------N-------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred ------------------C-------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 0 1367999999999999999999999943333332 3499999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002829 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (875)
Q Consensus 588 ~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA 667 (875)
++|+++||+++|.++||.|.+|||++|+|+++++.+ ++|+ +|+|+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLE-------PGEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999987643 4666 689999999999998888999999999999
Q ss_pred HHHhCcc
Q 002829 668 YALAGTV 674 (875)
Q Consensus 668 ~AlaG~I 674 (875)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=1.4e-100 Score=846.58 Aligned_cols=388 Identities=39% Similarity=0.622 Sum_probs=351.7
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccc
Q 002829 190 RVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGS 269 (875)
Q Consensus 190 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~ 269 (875)
||++||+||++++.+|+. +|.+.+.+||. ++.+++||++|++. .+|.++++|++|..
T Consensus 1 ~v~~hD~tgp~a~~~~~~-------~~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-------LAALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHH-------cCCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 799999999999987744 45432355554 69999999999863 26677788888888
Q ss_pred cccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecC
Q 002829 270 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (875)
Q Consensus 270 ~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 348 (875)
++|+ +++++||+|||||+++|++ ..| ++++||||||||+||||++|||+|++|++++|++|++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 8875 8999999999999999943 455 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHH
Q 002829 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (875)
Q Consensus 349 evVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 428 (875)
++++|+|+|+|++||++|||+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCC
Q 002829 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFK 508 (875)
Q Consensus 429 ~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~ 508 (875)
+.++|++..+ +++.|.+. + .+|++|.|+++++|||++|||+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999987654 44444442 2 4799999999999999999999999999999999999752
Q ss_pred CCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002829 509 GFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTK 588 (875)
Q Consensus 509 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~ 588 (875)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 14789999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHH
Q 002829 589 YLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 668 (875)
Q Consensus 589 ~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~ 668 (875)
+++++||+++|+++||.|..+||++|+|+++++.. +|++ +|+|+||||+||||+..+.+|||||++|||+
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~-------~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVA-------DGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCC-------CCcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 99999999999999999999999999999987743 4565 6899999999999998889999999999999
Q ss_pred HHhCcc
Q 002829 669 ALAGTV 674 (875)
Q Consensus 669 AlaG~I 674 (875)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.7e-97 Score=867.16 Aligned_cols=421 Identities=23% Similarity=0.337 Sum_probs=366.7
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCC
Q 002829 163 VTKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVD 239 (875)
Q Consensus 163 v~~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d 239 (875)
..++++|||++.+.+.. .+..|..++|.|++||.||++++. .++++|. ..++|.. |.+++||.+|..
T Consensus 369 ~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~-------~~~~lg~--~~~~~d~-v~~~~dH~~p~~ 438 (835)
T PRK09238 369 KGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRD-------ELKDLAC--LGFSADL-VMQSFCHTAAYP 438 (835)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHH-------HHHHcCC--cccCCCc-EEEEccCCCCCC
Confidence 45799999999887643 456789999999999999999854 4566775 4666664 788999999987
Q ss_pred cccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccCe-eeecCCCCcc
Q 002829 240 VARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDS-VVGTDSHTTM 318 (875)
Q Consensus 240 ~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pdt-vVGTDSHTtm 318 (875)
.. .++..++..++|.+++ + +.+++||+|||||++ +|+++||+ ++||||||||
T Consensus 439 ~~--~~a~~~~~lr~Fa~~~--------G------i~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~t 491 (835)
T PRK09238 439 KP--VDVKTHHTLPDFIMNR--------G------GVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 491 (835)
T ss_pred CH--HHHHHHHHHHHHHHHc--------C------CcEeCCCCCeeeecc-----------cccccCCeEEEecccccCC
Confidence 54 4555777788887742 2 345789999999996 35889985 5999999999
Q ss_pred cCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHh------------cCccceEE
Q 002829 319 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRK------------HGVVGKFV 386 (875)
Q Consensus 319 ~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~------------~GvvGk~V 386 (875)
+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 492 ~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~l 568 (835)
T PRK09238 492 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568 (835)
T ss_pred CCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEE
Confidence 997 789999999999999999999999999999999999999999999999444333 35789999
Q ss_pred EEecCcCCCCChhhhhhhhccccccCceeeeec-CChHHHHHHhhc----------CCCc-----hhHHHHHHHHHHccc
Q 002829 387 EFYGEGMGQLPLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRSD-----ETVSMIEEYLRANKM 450 (875)
Q Consensus 387 EF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp-~De~Tl~YL~~t----------gR~~-----~~~~l~e~y~k~~~l 450 (875)
||. ||++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||++ .+++.+++|++.+.+
T Consensus 569 Ef~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~l 646 (835)
T PRK09238 569 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPEL 646 (835)
T ss_pred EEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhccc
Confidence 995 6999999999999999999999999999 778889999986 6652 356788999998888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-ceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCc
Q 002829 451 FVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP 529 (875)
Q Consensus 451 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 529 (875)
| .+|++|+|+++|+|||++| ||+||+|++|||++||+|+.+.
T Consensus 647 l----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~--------------------------------- 689 (835)
T PRK09238 647 L----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT--------------------------------- 689 (835)
T ss_pred c----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC---------------------------------
Confidence 8 4789999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002829 530 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 609 (875)
Q Consensus 530 ~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~ 609 (875)
+|++||||||| |+++|+++||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++||.|..|
T Consensus 690 ------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~p 756 (835)
T PRK09238 690 ------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMP 756 (835)
T ss_pred ------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 26689999999 9999999999999 9999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCccccCCCC
Q 002829 610 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDG 689 (875)
Q Consensus 610 GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G 689 (875)
||++|+||.+.+ .+|++ +|+|+||||+||||+ .+.+|||||++|||+||+|+|
T Consensus 757 GCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I--------------- 809 (835)
T PRK09238 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRI--------------- 809 (835)
T ss_pred cchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCcc---------------
Confidence 999999996554 46776 688999999999997 568999999999999999999
Q ss_pred CceecccCCCChHHHHHHHHhc
Q 002829 690 KGVYFKDIWPSNEEIAEVVQSS 711 (875)
Q Consensus 690 ~~VyL~diwPs~~Ei~~~~~~~ 711 (875)
|+.+|+.+++.+.
T Consensus 810 ---------~~p~e~~~~~~~~ 822 (835)
T PRK09238 810 ---------PTVEEYQEYVAEI 822 (835)
T ss_pred ---------CCHHHHHHHHhhh
Confidence 7778888777653
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1.5e-96 Score=856.98 Aligned_cols=420 Identities=23% Similarity=0.346 Sum_probs=365.1
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCC
Q 002829 163 VTKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVD 239 (875)
Q Consensus 163 v~~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d 239 (875)
.+++.+|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. ..++|.. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhCC--ceECCCc-EEEEeCCCCCCC
Confidence 46899999999987643 45678999999999999999986544 55554 4666654 788999999887
Q ss_pred cccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccCe-eeecCCCCcc
Q 002829 240 VARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDS-VVGTDSHTTM 318 (875)
Q Consensus 240 ~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pdt-vVGTDSHTtm 318 (875)
.. .++..++..++|.+++ + +.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~~--~~a~~~~~lr~Fa~~~--------G------i~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 KP--VDVNTHHTLPDFIMNR--------G------GVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred CH--HHHHHHHHHHHHHHHc--------C------CeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 43 4566778888887742 2 44688999999999876 468975 6999999999
Q ss_pred cCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHh------------cCccceEE
Q 002829 319 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRK------------HGVVGKFV 386 (875)
Q Consensus 319 ~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~------------~GvvGk~V 386 (875)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|.+||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 57 999999999999999999999999999999999999999999999999655443 34689999
Q ss_pred EEecCcCCCCChhhhhhhhccccccCceeeeecCChH-HHHHHhhc----------CCCc-----hhHHHHHHHHHHccc
Q 002829 387 EFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVSMIEEYLRANKM 450 (875)
Q Consensus 387 EF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~-Tl~YL~~t----------gR~~-----~~~~l~e~y~k~~~l 450 (875)
||. |+++||+++|+|||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++.+.+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999965 89999995 6654 357788999988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-ceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCc
Q 002829 451 FVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP 529 (875)
Q Consensus 451 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 529 (875)
| .+|++|.|+++|+|||++| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 4789999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002829 530 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 609 (875)
Q Consensus 530 ~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~ 609 (875)
.|++||||||| |+.+|+++||.+| ||+++.| ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25689999999 7999999999998 9999988 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCccccCCCC
Q 002829 610 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDG 689 (875)
Q Consensus 610 GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G 689 (875)
||++|+||.+.+ .+|++ +|+|+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 757 GCg~C~Gn~~~v--------~~Ge~---vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I--------------- 809 (844)
T TIGR00117 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKI--------------- 809 (844)
T ss_pred ccccccCCCCcC--------CCCCE---EEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCccc---------------
Confidence 999999997665 35665 678999999999998 457999999999999999999
Q ss_pred CceecccCCCChHHHHHHHHhc
Q 002829 690 KGVYFKDIWPSNEEIAEVVQSS 711 (875)
Q Consensus 690 ~~VyL~diwPs~~Ei~~~~~~~ 711 (875)
|+.+|+.+++.+.
T Consensus 810 ---------~dp~e~~~~~~~~ 822 (844)
T TIGR00117 810 ---------PTPEEYQTYVSEK 822 (844)
T ss_pred ---------CCHHHHHHHHHhh
Confidence 7788888888753
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=7.7e-94 Score=832.68 Aligned_cols=417 Identities=22% Similarity=0.319 Sum_probs=360.7
Q ss_pred ccHHHHHHHHhcccCC----CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHc---CCCCCccCCCCCEEEEeCCC
Q 002829 163 VTKDDVEKIIDWENTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNL---NSDPKKINPLVPVDLVVDHS 235 (875)
Q Consensus 163 v~~~~iekil~~~~~~----~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~---G~dp~~inP~~pv~lviDHs 235 (875)
..++.+|||++.+.+. ..+..|..++|.|++||.||++++.. ++++ |.||++ |.+++||.
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~e-------fkel~~~~~dpdk------v~~~fDH~ 508 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDE-------LKDLACLGFSADL------VMQSFCHT 508 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHH-------HHHhcccccCccc------EEEEccCC
Confidence 4589999999998754 14567899999999999999998654 4554 445544 58999999
Q ss_pred CCCCcccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCC
Q 002829 236 VQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDS 314 (875)
Q Consensus 236 v~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDS 314 (875)
+|+... .++..++..++|.++ + ++.+++||+|||||++.| ++.|| +++|+||
T Consensus 509 ap~p~~--~~~~~~~~lr~Fa~~--------~------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDS 561 (938)
T PLN00094 509 AAYPKP--VDVVTHHTLPDFIRN--------R------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDS 561 (938)
T ss_pred CCCCCH--HHHHHHHHHHHHHHH--------c------CCEEECCCCceecccccc-----------cccCCeEEEeecC
Confidence 888754 455667778888773 2 245788999999998755 67886 6899999
Q ss_pred CCcccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHH------HHHHh------cCcc
Q 002829 315 HTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVT------QMLRK------HGVV 382 (875)
Q Consensus 315 HTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~------~~Lr~------~Gvv 382 (875)
|||+..|+ ++|.|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+ +.|+. .+.+
T Consensus 562 HT~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~ 638 (938)
T PLN00094 562 HTRFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFS 638 (938)
T ss_pred CCCCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEe
Confidence 99987775 558899999999999999999999999999999999999999999997 44433 3458
Q ss_pred ceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCCh-HHHHHHhh----------cCCC-----chhHHHHHHHHH
Q 002829 383 GKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DETVSMIEEYLR 446 (875)
Q Consensus 383 Gk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De-~Tl~YL~~----------tgR~-----~~~~~l~e~y~k 446 (875)
||+||| +||++||+++|+|||||++|+||++|+||+|+ .|++||+. +|+. +.+++.+|+|++
T Consensus 639 GkilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~ 716 (938)
T PLN00094 639 GRILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLA 716 (938)
T ss_pred eEEEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHh
Confidence 999999 77999999999999999999999999999995 68999986 4543 345678899999
Q ss_pred HccccccCCCCCCCCcccEEEEEEcCCc-ceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeec
Q 002829 447 ANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 525 (875)
Q Consensus 447 ~~~l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~ 525 (875)
.+.+| .+|++|+|+++||||||+| ||+||+|++|||++||+|+.+ .
T Consensus 717 ~~~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--------------~--------------- 763 (938)
T PLN00094 717 DPELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--------------D--------------- 763 (938)
T ss_pred hcccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC--------------C---------------
Confidence 88887 4789999999999999999 999999999999999999852 1
Q ss_pred CCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcE
Q 002829 526 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFH 605 (875)
Q Consensus 526 ~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~ 605 (875)
+|++||||||| |+++|+++||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++||.
T Consensus 764 ----------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~ 826 (938)
T PLN00094 764 ----------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGAR 826 (938)
T ss_pred ----------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCE
Confidence 25699999999 7999999999999 899999999999999999999999999999999999999
Q ss_pred EeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCcccc
Q 002829 606 IVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGT 685 (875)
Q Consensus 606 i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~ 685 (875)
|..|||++|+||++.+ .+|++ +|+|+||||+||||+ .+.+||+||++|||+||+|+|
T Consensus 827 i~~PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~I----------- 883 (938)
T PLN00094 827 TEMPGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRL----------- 883 (938)
T ss_pred EcCCccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCcc-----------
Confidence 9999999999997665 35666 789999999999998 568999999999999999999
Q ss_pred CCCCCceecccCCCChHHHHHHHHh
Q 002829 686 GKDGKGVYFKDIWPSNEEIAEVVQS 710 (875)
Q Consensus 686 ~~~G~~VyL~diwPs~~Ei~~~~~~ 710 (875)
|+.+|+.+++.+
T Consensus 884 -------------tdpre~l~~~~~ 895 (938)
T PLN00094 884 -------------PTVEEYLSYMEK 895 (938)
T ss_pred -------------CCHHHHHHHHHh
Confidence 777888877765
No 34
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=4.8e-48 Score=431.39 Aligned_cols=414 Identities=24% Similarity=0.387 Sum_probs=327.3
Q ss_pred HHHHHHHhcccCC---CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHH---cCCCCCccCCCCCEEEEeCCCCCCC
Q 002829 166 DDVEKIIDWENTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKN---LNSDPKKINPLVPVDLVVDHSVQVD 239 (875)
Q Consensus 166 ~~iekil~~~~~~---~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~---~G~dp~~inP~~pv~lviDHsv~~d 239 (875)
+.++|+.+++-+. ..+..+..+...|-.||.||+|. ||.+++ +|.+ +|+|+..+....
T Consensus 374 TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMT-------rdElk~lAclgfs---------aD~vmQSfCHTA 437 (852)
T COG1049 374 TLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMT-------RDELKDLACLGFS---------ADLVMQSFCHTA 437 (852)
T ss_pred cHHHHHhhhccCCccccCCCcccceeeeeccccCCCCcc-------HHHHHHHHhhccc---------chhhhhhccccc
Confidence 3456666665432 24567888889999999999998 444444 4655 355555444333
Q ss_pred cc-cchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccCee-eecCCCCc
Q 002829 240 VA-RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSV-VGTDSHTT 317 (875)
Q Consensus 240 ~~-~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pdtv-VGTDSHTt 317 (875)
.+ ...+-..+.....|--| +.++. ..||.||+|.+. +.++.|||| .|+||||.
T Consensus 438 aypkpvdv~th~~Lp~Fi~~-------------rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTR 492 (852)
T COG1049 438 AYPKPVDVKTHHTLPDFIMN-------------RGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTR 492 (852)
T ss_pred ccCCccchhccccchHHHhh-------------cCcee-cCCCCccHHHHH-----------HhccCCcceecCCccccc
Confidence 22 11121122223333332 23333 348999999986 568999975 89999999
Q ss_pred ccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHH-HHHh----------cC-ccceE
Q 002829 318 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQ-MLRK----------HG-VVGKF 385 (875)
Q Consensus 318 m~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~-~Lr~----------~G-vvGk~ 385 (875)
+.-|+ +++.|+-=++.+.+++.+.|.+||+|.|+++|+|+||+|-+|||.+|-- .+.+ ++ ..|++
T Consensus 493 fpiGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRI 569 (852)
T COG1049 493 FPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 569 (852)
T ss_pred ccccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceeccee
Confidence 98765 5888888899999999999999999999999999999999999998742 2222 12 36999
Q ss_pred EEEecCcCCCCChhhhhhhhccccccCceeeeecCChH-HHHHHhhc----------CCCc-----hhHHHHHHHHHHcc
Q 002829 386 VEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVSMIEEYLRANK 449 (875)
Q Consensus 386 VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~-Tl~YL~~t----------gR~~-----~~~~l~e~y~k~~~ 449 (875)
+|. +|+.+|.+++-++++..++|.-|..+.+--+++ .++||+.. |..+ ..++.+|+|+....
T Consensus 570 lEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ 647 (852)
T COG1049 570 LEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPE 647 (852)
T ss_pred EEe--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcc
Confidence 999 779999999999999999999999888776555 57999763 4443 35788899998888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-ceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCC
Q 002829 450 MFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQ 528 (875)
Q Consensus 450 l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~ 528 (875)
|. .+|.+|+|..+|||||+.| ||++|.|.+|||+..++++..+
T Consensus 648 ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~-------------------------------- 691 (852)
T COG1049 648 LL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD-------------------------------- 691 (852)
T ss_pred cc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC--------------------------------
Confidence 87 5799999999999999999 8999999999999999987531
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCC--ccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEE
Q 002829 529 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGL--EVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHI 606 (875)
Q Consensus 529 ~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGl--kV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i 606 (875)
.|+-+|||||... .-+++++|.+| +|. .+| .|++|+|.++...++|.++|+..+|-++|+.+
T Consensus 692 -------~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~agar~ 755 (852)
T COG1049 692 -------KIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELP--TRLWVAPPTKMDAAQLTEEGYYSIFGKAGARI 755 (852)
T ss_pred -------ccceeeeehhhcc-chhHHHHHHHH------HhcccCCC--cceEecCCccccHHHHhhcchHHHHhhcccee
Confidence 2568999999753 67899999988 443 345 78999999999999999999999999999999
Q ss_pred eccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCccccC
Q 002829 607 VGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTG 686 (875)
Q Consensus 607 ~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~ 686 (875)
.-|||..|+||.... ++|.. .++|+.|||++|+|... .+||+|.+++|.+||-|+|
T Consensus 756 E~PGCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki------------ 811 (852)
T COG1049 756 EMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI------------ 811 (852)
T ss_pred cCCCcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC------------
Confidence 999999999997543 46666 46799999999999974 6899999999999999998
Q ss_pred CCCCceecccCCCChHHHHHHHHhcCCh
Q 002829 687 KDGKGVYFKDIWPSNEEIAEVVQSSVLP 714 (875)
Q Consensus 687 ~~G~~VyL~diwPs~~Ei~~~~~~~v~~ 714 (875)
||.||..+++.+ +++
T Consensus 812 ------------Pt~eEY~~~v~~-i~~ 826 (852)
T COG1049 812 ------------PTVEEYMAYVAK-IDK 826 (852)
T ss_pred ------------CCHHHHHHHHHH-hcc
Confidence 999999999873 443
No 35
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=1.5e-45 Score=363.32 Aligned_cols=94 Identities=68% Similarity=1.004 Sum_probs=92.5
Q ss_pred EecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhhccCCCCCCceEEcCCCe
Q 002829 778 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 857 (875)
Q Consensus 778 ~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~l~~~~~g~~t~~~p~g~ 857 (875)
+||||||||||||||+|+++||||+||+++||+|+||||||||||||||||||||||+||+|+|++|+|||+|+|+|+||
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHh
Q 002829 858 KLYVFDAAMVSNMK 871 (875)
Q Consensus 858 ~~~i~daa~~y~~~ 871 (875)
.|+||||||+|+++
T Consensus 81 ~~~i~~aA~~Yk~~ 94 (171)
T cd01580 81 VMSIYDAAMRYKEE 94 (171)
T ss_pred EeeHHHHHHHHHHc
Confidence 99999999999985
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.91 E-value=2.7e-25 Score=243.24 Aligned_cols=420 Identities=14% Similarity=0.064 Sum_probs=293.9
Q ss_pred cHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCc
Q 002829 164 TKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDV 240 (875)
Q Consensus 164 ~~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~ 240 (875)
.++..++|+++..... .+-++...+|-.+.||..+.-+.--+ .++++.....|+|.. +...+||..-+..
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpg 138 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPG 138 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecC
Confidence 3566777877764432 24456677788888887766553211 122333334555543 5778999876653
Q ss_pred ccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCcccc-CeeeecCCCCccc
Q 002829 241 ARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMI 319 (875)
Q Consensus 241 ~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~P-dtvVGTDSHTtm~ 319 (875)
.+ .-....++++..|-...-.| .|- .+--+|..-+--.|.||.-.. | .+.-.| ....|+||||++.
T Consensus 139 sg--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~yerc---a------stsnRnfEgrqGa~srThlm 205 (502)
T KOG0454|consen 139 SG--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHYERC---A------STSNRNFEGRQGADSRTHLM 205 (502)
T ss_pred ch--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHHHHh---h------hccCCCccccccccccchhh
Confidence 32 22233334444443222222 453 233345555544799996322 1 455566 4689999999999
Q ss_pred CccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChh
Q 002829 320 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLA 399 (875)
Q Consensus 320 GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~ 399 (875)
++.+.++.|+|+.++......+...+++|.++.++|+|+.+.-..++|+++.++...-..+...+..||-+--. +|+++
T Consensus 206 a~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~ 284 (502)
T KOG0454|consen 206 AASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGME 284 (502)
T ss_pred hhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCc
Confidence 99999999999999999999889999999999999999999999999999999888878888899999976655 89999
Q ss_pred hhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCC-CCcccEEEEEEcCCcceec
Q 002829 400 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQ-ERSYSSYLQLDLADVEPCI 478 (875)
Q Consensus 400 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~-~a~Y~~vieiDLs~veP~V 478 (875)
.|+|||||..|-+-|-+++|.|--|+-|-....++.. + -|+ .|. ++.|...+.+|.+..+|..
T Consensus 285 ~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~~----~dg~~k~~~~dFv~~vE~~~~~s 348 (502)
T KOG0454|consen 285 TFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EVA----LDGLPKSFVTDFVLPVEPLRKYS 348 (502)
T ss_pred ceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hhe----ecCCchhhccceeccccccceeE
Confidence 9999999999999999999998766655443332221 1 121 232 3678889999999999998
Q ss_pred cCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHH
Q 002829 479 SGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAG 558 (875)
Q Consensus 479 AgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~ 558 (875)
+.|+. ||.-==++ =.|-.|...++|+|+-..-++.|+
T Consensus 349 iii~~-DNFGCGSS---------------------------------------REHAPv~L~~~GakaivA~Sya~I--- 385 (502)
T KOG0454|consen 349 IIIGG-DNFGCGSS---------------------------------------REHAPVCLGAAGAKAIVAPSYARI--- 385 (502)
T ss_pred EEecc-CCcccccc---------------------------------------cccCcchhhhcccceecchhHHHH---
Confidence 88887 54311111 014456778899999998887664
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHH-----HHHH---cCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhc
Q 002829 559 LVAKKACELGLEVKPWVKTSLAPGSGVVTK-----YLQQ---SGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAIT 630 (875)
Q Consensus 559 lLak~A~~kGlkV~p~VktsvaPGS~~V~~-----~l~~---~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~ 630 (875)
.+|+-++.|+.++ +-..+.|--+-++. .+-. .-++.+++..+..=+.|-|..|.++. ++ .+....
T Consensus 386 -FfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~--ad-~I~~~~- 458 (502)
T KOG0454|consen 386 -FFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVID--AD-GIFAYA- 458 (502)
T ss_pred -HHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccC--ch-HHHHhh-
Confidence 5566788899887 34455555543332 1222 12566777777766788999999975 11 222222
Q ss_pred cCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCc
Q 002829 631 ENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 673 (875)
Q Consensus 631 ~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~ 673 (875)
+.+. +|+|.||||++|||.....+|||||.+|+|+++.|+
T Consensus 459 ~ke~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 459 RKEG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cccc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2232 689999999999999999999999999999999998
No 37
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.83 E-value=4.6e-21 Score=210.36 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=159.6
Q ss_pred HHccccccCCCCCCCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeec
Q 002829 446 RANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 525 (875)
Q Consensus 446 k~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~ 525 (875)
++..+|.+. .+|+.+.|+.+++|..-++.|.+.+-.+||+..|+.--..+.... ..++. .......+.|
T Consensus 16 ~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~v-td~i~---------a~~~ersL~y 84 (502)
T KOG0454|consen 16 SAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTV-TDKIL---------ARASERSLVY 84 (502)
T ss_pred hhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCccc-chHHH---------Hhhhhhceee
Confidence 444566543 589999999999999999999999999999999987644321110 00000 0011234556
Q ss_pred CCCcc--cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee-EEEecCcHHHHHHHHHcCcHHHHHhc
Q 002829 526 HGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVK-TSLAPGSGVVTKYLQQSGLQKYLNQQ 602 (875)
Q Consensus 526 ~g~~~--~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~Vk-tsvaPGS~~V~~~l~~~GLl~~L~~a 602 (875)
+|.+. .+.--.++-+|||||||.+.+|++.||+++ +|.|+.-.+| ..++|||+.|...++.+||-++|.++
T Consensus 85 mGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 85 MGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred ccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 66443 233345678999999999999999999999 9999987777 68899999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 002829 603 GFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 674 (875)
Q Consensus 603 Gf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I 674 (875)
||.+...||..|.|+........|.| -+|+|||||||+|.+.+. +|+||.+.+|.++.|+.
T Consensus 159 gF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~ 219 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHD 219 (502)
T ss_pred ceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhccccccc
Confidence 99999999999999875544556654 479999999999998765 99999999999999975
No 38
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=98.65 E-value=3e-09 Score=103.48 Aligned_cols=69 Identities=33% Similarity=0.279 Sum_probs=66.8
Q ss_pred HHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHH
Q 002829 802 KYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNM 870 (875)
Q Consensus 802 ~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~ 870 (875)
+||+.+|+...++|||+.||+||++|.||||+|.++.|.|..+..++.+.+.|+++.+++|+++++|++
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~ 71 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKV 71 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHH
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcc
Confidence 588899999999999999999999999999999999999999999999999999999999999999983
No 39
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=98.45 E-value=1e-07 Score=94.35 Aligned_cols=67 Identities=27% Similarity=0.194 Sum_probs=52.3
Q ss_pred EecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhhccCCCCCCceEEcCCCe
Q 002829 778 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 857 (875)
Q Consensus 778 ~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~l~~~~~g~~t~~~p~g~ 857 (875)
|+.++||||||||||++ |. -|||-+-..+=+|... .|.... +-+..++.++|+
T Consensus 1 k~~g~~tTDhI~pag~~---------l~--------------~R~~l~~is~~~~~~a--~n~~~~--~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGPW---------LK--------------YRGHLDNISNNLLIGA--INAENG--KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCcc---------cc--------------cccCHHHHHHHHhhhh--hhhhcc--ccccccccCCCc
Confidence 46789999999999976 22 3677777777666433 566653 566788999999
Q ss_pred eecHHHHHHHHHHh
Q 002829 858 KLYVFDAAMVSNMK 871 (875)
Q Consensus 858 ~~~i~daa~~y~~~ 871 (875)
.+++|++|++|++.
T Consensus 54 ~~~~~~~A~~yk~~ 67 (149)
T cd01578 54 YGPVPDTARDYKAH 67 (149)
T ss_pred ccchHHHHHHHHHc
Confidence 99999999999874
No 40
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.66 E-value=0.03 Score=64.19 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=59.8
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002829 535 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGC 611 (875)
Q Consensus 535 g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GC 611 (875)
++|+.++|| |=--|.+.++..|.+| +|+++++.++++|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 288 ~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 288 EKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 346677775 8888899999999999 89999999988766 578899999999999999999999997655
No 41
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=93.91 E-value=0.021 Score=52.79 Aligned_cols=51 Identities=37% Similarity=0.359 Sum_probs=32.4
Q ss_pred EecCCccccccCCCCC--------CCCCC---hHHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhhccC
Q 002829 778 NFGDSITTDHISPAGS--------IHKDS---PAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN 843 (875)
Q Consensus 778 ~lGDsiTTDHISPAG~--------I~~~s---~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~l~~ 843 (875)
+++|||||||||||+. ....| -|..=|+..|++ +.+=..|+-|--+|.+-.
T Consensus 1 ~~~~~~~td~~~p~~~~iiVaG~nfG~GSSRE~A~~al~~~Gi~---------------aVia~sfa~If~rN~~n~ 62 (88)
T cd00404 1 KVAGNITTDHISPAGPGVVIGDENYGTGSSREHAALELRLLGGR---------------AVIAKSFARIFFRNLVDQ 62 (88)
T ss_pred CcccccccccccCCCCEEEEecCCeecCCCHHHHHHHHHHhCCC---------------EEEEeCHHHHHHhhHHhc
Confidence 4799999999999981 11111 133345555554 455567888887887653
No 42
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=93.17 E-value=0.041 Score=53.58 Aligned_cols=29 Identities=38% Similarity=0.761 Sum_probs=21.2
Q ss_pred EecCCccccccCCCCC-CCC--CC--hHHHHHHH
Q 002829 778 NFGDSITTDHISPAGS-IHK--DS--PAAKYLLE 806 (875)
Q Consensus 778 ~lGDsiTTDHISPAG~-I~~--~s--~Ag~yL~~ 806 (875)
++||+|+||||.|++. ... .. ..|+|+.+
T Consensus 1 ~~gdnidTD~IiP~~~~~~~~~~~~~~l~~~~f~ 34 (121)
T cd01579 1 KVGDNITTDHIMPAGAKVLPLRSNIPAISEFVFH 34 (121)
T ss_pred CCCCcCChhhcCCCCccccccCCCHHHHHHhhcc
Confidence 5899999999999984 322 22 26777776
No 43
>COG1679 Predicted aconitase [General function prediction only]
Probab=92.83 E-value=0.26 Score=55.95 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=57.5
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002829 535 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGC 611 (875)
Q Consensus 535 g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GC 611 (875)
+.++..+|| |---|.+.++..|.+| +|++-++.+.++|. -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345677776 7777899999999999 88887777777655 689999999999999999999999997553
No 44
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=88.29 E-value=1 Score=51.78 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=56.0
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 002829 537 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIG 616 (875)
Q Consensus 537 V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiG 616 (875)
+++++| .|=--|.+.++.-|.+| +|+++++.++++|. -|+.|+ +.+.|+++.|+++|..|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556777 58888899999999999 89777666666555 466676 99999999999999999997777 664
No 45
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=87.00 E-value=0.27 Score=50.12 Aligned_cols=15 Identities=60% Similarity=0.904 Sum_probs=14.0
Q ss_pred EEecCCccccccCCC
Q 002829 777 LNFGDSITTDHISPA 791 (875)
Q Consensus 777 ~~lGDsiTTDHISPA 791 (875)
.++||+|.||||.||
T Consensus 5 ~~~gdnIdTD~I~P~ 19 (163)
T PRK00439 5 WKFGDNIDTDVIIPA 19 (163)
T ss_pred EEeCCCCchhhCChH
Confidence 689999999999996
No 46
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=85.62 E-value=0.31 Score=49.53 Aligned_cols=15 Identities=47% Similarity=0.815 Sum_probs=13.9
Q ss_pred EEecCCccccccCCC
Q 002829 777 LNFGDSITTDHISPA 791 (875)
Q Consensus 777 ~~lGDsiTTDHISPA 791 (875)
.++||+|.||||-|+
T Consensus 4 ~~~gdnIdTD~I~P~ 18 (156)
T TIGR02084 4 HKYGDNVDTDVIIPA 18 (156)
T ss_pred EEcCCCccHhhccHH
Confidence 679999999999986
No 47
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=83.04 E-value=0.8 Score=56.95 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred CcEEEEEecCCccccccCCCCCC
Q 002829 772 DAYCLLNFGDSITTDHISPAGSI 794 (875)
Q Consensus 772 ~arvL~~lGDsiTTDHISPAG~I 794 (875)
..+| .++||+|+|||||||+.-
T Consensus 167 ~g~V-~KvgdnInTD~I~Pa~~~ 188 (835)
T PRK09238 167 TVTV-FKVTGETNTDDLSPAPDA 188 (835)
T ss_pred EEEE-EEeCCCCchhccCCcccc
Confidence 4678 899999999999999975
No 48
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=81.55 E-value=0.64 Score=47.14 Aligned_cols=15 Identities=53% Similarity=0.906 Sum_probs=13.8
Q ss_pred EEecCCccccccCCC
Q 002829 777 LNFGDSITTDHISPA 791 (875)
Q Consensus 777 ~~lGDsiTTDHISPA 791 (875)
.++||+|.||||-|+
T Consensus 4 ~~~gdnIdTD~IiP~ 18 (154)
T TIGR02087 4 WKFGDDIDTDEIIPG 18 (154)
T ss_pred EEcCCCcchhhCcHH
Confidence 679999999999986
No 49
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=78.23 E-value=0.97 Score=49.08 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=28.7
Q ss_pred CcEEEEEecCCccccccCCCCCCCC-------CChHHHHHHHcCCCCC
Q 002829 772 DAYCLLNFGDSITTDHISPAGSIHK-------DSPAAKYLLERGVDRK 812 (875)
Q Consensus 772 ~arvL~~lGDsiTTDHISPAG~I~~-------~s~Ag~yL~~~gv~~~ 812 (875)
..|| .++||+|.||||-||.-... ....|+|+.+ |+.+.
T Consensus 70 ~Grv-~k~gDNIdTD~IiPa~~l~~~~sn~~~~~~l~~~~F~-~l~~~ 115 (246)
T PLN00072 70 HGLC-FVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALI-GLPAF 115 (246)
T ss_pred EEeE-EEeCCCcchhhcccHHHhccccccCCCHHHHHHhhhc-cCCcc
Confidence 4588 58999999999999987643 2467888875 34433
No 50
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=77.10 E-value=1.2 Score=44.22 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=23.5
Q ss_pred EEecCCccccccCCCCCCCCCChHHHHHHH
Q 002829 777 LNFGDSITTDHISPAGSIHKDSPAAKYLLE 806 (875)
Q Consensus 777 ~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~ 806 (875)
+++||+|.||+|+|+.-....+...++.++
T Consensus 1 ~~~gddIdTD~i~P~~y~~~~~~~~~ha~~ 30 (131)
T cd01576 1 FKVPGETNTDDLSPAPDAWSRPDIPLHALA 30 (131)
T ss_pred CcCCCCCchhcccChhhcCCcchHHHHHhc
Confidence 368999999999999887666666666444
No 51
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=66.40 E-value=2.5 Score=43.45 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEecCCccccccCCCCCCC---CCChHHHHHHH
Q 002829 777 LNFGDSITTDHISPAGSIH---KDSPAAKYLLE 806 (875)
Q Consensus 777 ~~lGDsiTTDHISPAG~I~---~~s~Ag~yL~~ 806 (875)
.+|||+|.||||-||=-.. .....|+|+.+
T Consensus 5 ~~~gdnIdTD~IiPa~~l~~~~~~~~l~~~~f~ 37 (166)
T PRK14023 5 WKFGDNINTDDILPGKYAPFMVGEDRFHNYAFA 37 (166)
T ss_pred EEcCCCcchhhcchHHHhccCCCHHHHHhhhcc
Confidence 6799999999999982212 22345555555
No 52
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=40.80 E-value=23 Score=32.56 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=26.1
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 541 AITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 541 ~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
+|++|..|.-... +||+.|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 6899999987665 488889899999999877
No 53
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=39.58 E-value=34 Score=33.94 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=27.6
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 539 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 539 iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
|++||+|..|=---.| ||.-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 7899999999655555 77888899999999888
No 54
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=37.76 E-value=29 Score=34.44 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=23.3
Q ss_pred CCCchhHhhhh---ccCCeEEEEEeccCCCC
Q 002829 619 GDLDESVATAI---TENDIVAAAVLSGNRNF 646 (875)
Q Consensus 619 g~l~~~~e~~i---~~~~l~~~aVsSgNRNF 646 (875)
|.+++.+.+-+ .+.+++++.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 67888888888 45578888899999999
No 55
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=36.48 E-value=27 Score=34.34 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=26.6
Q ss_pred cEEeccCcccccCCCCCCchhHhhhhc---cCCeEEEEEeccCCCC
Q 002829 604 FHIVGYGCTTCIGNSGDLDESVATAIT---ENDIVAAAVLSGNRNF 646 (875)
Q Consensus 604 f~i~~~GCgtCiGnsg~l~~~~e~~i~---~~~l~~~aVsSgNRNF 646 (875)
|.++.|.=+..-+ .+.+++.+.+-++ ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4455544333333 3448889988887 5666777789999999
No 56
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=35.88 E-value=20 Score=45.11 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=24.3
Q ss_pred CCCCcEEEEEecCCccccccCCCCCCCC-CCh--HHHHHHH
Q 002829 769 GVKDAYCLLNFGDSITTDHISPAGSIHK-DSP--AAKYLLE 806 (875)
Q Consensus 769 ~i~~arvL~~lGDsiTTDHISPAG~I~~-~s~--Ag~yL~~ 806 (875)
.|+ .+|. ++||+|.||+||||-.... ..+ .++++.+
T Consensus 166 ~i~-g~V~-k~gddinTD~i~Pa~~a~sr~D~~~~a~~m~~ 204 (844)
T TIGR00117 166 KIT-VTVF-KVTGETNTDDLSPAPDAWTRPDIPLHALAMLK 204 (844)
T ss_pred heE-EEEE-EeCCCCchhccCChhhhhcCCCHHHHHHHHhh
Confidence 344 4665 8999999999999976422 223 4555554
No 57
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=33.55 E-value=13 Score=34.90 Aligned_cols=14 Identities=64% Similarity=0.971 Sum_probs=12.8
Q ss_pred EecCCccccccCCC
Q 002829 778 NFGDSITTDHISPA 791 (875)
Q Consensus 778 ~lGDsiTTDHISPA 791 (875)
++||+|-||||-|+
T Consensus 1 ~~gd~idTD~i~p~ 14 (91)
T cd01577 1 LFGDNIDTDQIIPA 14 (91)
T ss_pred CCCCccchhhcchH
Confidence 47999999999996
No 58
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=30.52 E-value=23 Score=37.67 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.6
Q ss_pred cEEEEEecCCccccccCCCCCCCC--CChHHHHHHH
Q 002829 773 AYCLLNFGDSITTDHISPAGSIHK--DSPAAKYLLE 806 (875)
Q Consensus 773 arvL~~lGDsiTTDHISPAG~I~~--~s~Ag~yL~~ 806 (875)
.+++.+.||+|.||+|-||--... ..-.|+|+.+
T Consensus 9 G~~~~l~~dnIDTD~IiPa~fl~~~~~~~l~~~~f~ 44 (200)
T PRK01641 9 GLAVPLDRANVDTDQIIPKQFLKRITRTGFGKGLFD 44 (200)
T ss_pred EEEEEcCCCCCChhhcchHhHcCcCCHHHHHHhhhc
Confidence 477777799999999999875533 3456777776
No 59
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=27.46 E-value=66 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=27.8
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 539 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 539 iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
+.+|++|..|.-... +||..|.+.|.+.|.+++
T Consensus 5 ivaVtacp~GiAht~-lAAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 5 LVAVTACVSGVAHTY-MAAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEeeCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 678999999986665 588889899999999877
No 60
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=24.70 E-value=63 Score=32.81 Aligned_cols=67 Identities=28% Similarity=0.438 Sum_probs=42.4
Q ss_pred CCCCCCchhHhhhhc---cCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCccccCCCCCce
Q 002829 616 GNSGDLDESVATAIT---ENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGV 692 (875)
Q Consensus 616 Gnsg~l~~~~e~~i~---~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~V 692 (875)
|.+|.+++++-+-+. ...++-..|.||||||- .+||+||.+---=..-|+ +
T Consensus 54 ~~~~~Vp~~vi~FLn~~~Nr~~~rGViaSGN~NfG------------------~~f~~Ag~~iS~k~~vPl--------L 107 (141)
T COG1780 54 GTVGAVPKQVIRFLNNEHNRALCRGVIASGNRNFG------------------DNFALAGDVISAKCGVPL--------L 107 (141)
T ss_pred CccCccCHHHHHHhccccchhheEEEEecCCccHH------------------HHHHHHHHHHHHHhCCCE--------E
Confidence 777899999988884 44556666789999993 258888877211001122 2
Q ss_pred ecccCCCChHHHHHHH
Q 002829 693 YFKDIWPSNEEIAEVV 708 (875)
Q Consensus 693 yL~diwPs~~Ei~~~~ 708 (875)
|==++.=+.+.|+++.
T Consensus 108 y~FEL~GT~~Dv~~v~ 123 (141)
T COG1780 108 YRFELLGTAEDVAAVR 123 (141)
T ss_pred EEEeccCCHHHHHHHH
Confidence 2224566777776654
No 61
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=23.37 E-value=33 Score=34.27 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=20.3
Q ss_pred cCCccccccCCCCCCCC--C--ChHHHHHHH
Q 002829 780 GDSITTDHISPAGSIHK--D--SPAAKYLLE 806 (875)
Q Consensus 780 GDsiTTDHISPAG~I~~--~--s~Ag~yL~~ 806 (875)
-|+|.||||-|+.-... . -..++|..+
T Consensus 3 ~DnInTD~IiP~~y~~~~~~~~e~la~~~~e 33 (129)
T cd01674 3 ADNLNTDGIYPGKYTYQDDITPEKMAEVCME 33 (129)
T ss_pred ccccchhccCcccccccCCCCHHHHHHhhcc
Confidence 48999999999986621 1 267888776
No 62
>COG1679 Predicted aconitase [General function prediction only]
Probab=22.42 E-value=2.3e+02 Score=33.25 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=93.2
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHH--------H--HHcCcHHHHHhcCcEE
Q 002829 537 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKY--------L--QQSGLQKYLNQQGFHI 606 (875)
Q Consensus 537 V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~--------l--~~~GLl~~L~~aGf~i 606 (875)
|..|-|-.|.=..+-| |---.+++-++.|.||+ |-+++.|+|-.+..- . .+.-+++.++++|..+
T Consensus 44 I~sAhIsGvsY~tiG~---AGL~Fle~lae~garV~--VptTlNp~~~Dl~~w~~~gv~e~f~~~q~ri~~A~~~MGv~~ 118 (403)
T COG1679 44 IKSAHISGVSYKTIGD---AGLEFLEDLAEMGARVS--VPTTLNPAGVDLERWRELGVDEEFAEKQRRIAKAYESMGVRV 118 (403)
T ss_pred cccceecceeecccch---hHhHHHHHHHhcCCeEE--eeeccCcceecccchhhcCCChHHhHHHHHHHHHHHHcCCce
Confidence 4567788887554333 22123455567899999 999999999875442 1 2456889999999987
Q ss_pred eccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc------------
Q 002829 607 VGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV------------ 674 (875)
Q Consensus 607 ~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA~AlaG~I------------ 674 (875)
+ +.|+|=....-+- .++ .|.=.|= ++|+=.|-=.-.|-+.. .=++..+.||+|++
T Consensus 119 t-~TCtPY~~~~~p~--~Gd-~~AWaES--sAV~fANSVlGArTnRe-------ggp~aL~aAi~Gr~P~yG~hl~EnR~ 185 (403)
T COG1679 119 T-FTCTPYLLGNLPS--FGD-HLAWAES--SAVSFANSVLGARTNRE-------GGPLALAAAITGRTPLYGLHLDENRR 185 (403)
T ss_pred e-EeccccccCCCcc--ccc-eeeeecc--chhhhhhhhhhhhcccc-------CCHHHHHHHHhCCCcccccccccccc
Confidence 5 6899887643321 110 0110010 12222232222222221 23677899999987
Q ss_pred ---ccCCCCCcccc--------------CCCCCceecccCCCChHHHHHHHHh
Q 002829 675 ---DIDFEKEPIGT--------------GKDGKGVYFKDIWPSNEEIAEVVQS 710 (875)
Q Consensus 675 ---~id~~~eplg~--------------~~~G~~VyL~diwPs~~Ei~~~~~~ 710 (875)
-++++.+|..- -.||-|++.....|+.+++.++-..
T Consensus 186 ~~~~v~ve~~~~~~d~~~~~lGy~~G~~~~d~IP~~~~~~~p~~d~lKalgAA 238 (403)
T COG1679 186 PTVIVEVEFPPKEDDSEYGALGYLAGEAAGDGIPYFRLALFPSEDELKALGAA 238 (403)
T ss_pred ceEEEEEecCCCcchhhhHHHHHHHHHhccCCCCeeccCCCCCHHHHHHHHHH
Confidence 34555544431 1367888877778999999886544
Done!