Query 002829
Match_columns 875
No_of_seqs 295 out of 2075
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 9E-228 3E-232 1986.9 56.4 759 109-871 2-761 (888)
2 1c96_A Mitochondrial aconitase 100.0 2E-153 8E-158 1341.1 44.0 577 164-871 34-625 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 1E-101 5E-106 908.9 40.5 452 141-722 343-842 (865)
4 1l5j_A Aconitate hydratase 2; 99.1 1.4E-13 5E-18 163.6 -14.0 142 644-806 47-203 (865)
5 2hcu_A 3-isopropylmalate dehyd 98.4 7E-08 2.4E-12 99.4 1.0 75 753-854 4-81 (213)
6 1v7l_A 3-isopropylmalate dehyd 91.2 0.077 2.6E-06 52.7 2.2 31 776-806 7-39 (163)
7 2pkp_A Homoaconitase small sub 86.8 0.16 5.6E-06 50.6 0.8 31 776-806 7-39 (170)
8 3vba_A Isopropylmalate/citrama 74.2 0.97 3.3E-05 45.4 1.3 34 772-806 6-41 (176)
9 3h5j_A 3-isopropylmalate dehyd 70.0 0.83 2.8E-05 45.8 -0.3 37 770-806 9-47 (171)
10 2r4q_A Phosphotransferase syst 59.1 7.7 0.00026 36.0 4.0 33 539-572 5-37 (106)
11 2r48_A Phosphotransferase syst 58.0 7.9 0.00027 35.9 3.8 33 539-572 5-37 (106)
12 2kyr_A Fructose-like phosphotr 49.4 11 0.00036 35.3 3.2 33 539-572 8-40 (111)
13 2m1z_A LMO0427 protein; homolo 45.7 13 0.00044 34.4 3.1 33 539-572 5-37 (106)
14 3q3w_A 3-isopropylmalate dehyd 31.0 15 0.00052 37.6 1.2 35 772-806 11-47 (203)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=8.9e-228 Score=1986.91 Aligned_cols=759 Identities=61% Similarity=1.047 Sum_probs=722.8
Q ss_pred CccccccccccCCCCcceeEEEecCCCCCCCCCCCChhhhhHHhhhhcccCCCcccHHHHHHHHhcccCCCCcceEeeec
Q 002829 109 NAFKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKP 188 (875)
Q Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~lP~sirillE~~lR~~~~~~v~~~~iekil~~~~~~~~~~eI~~~p 188 (875)
+||.+.++.|...+ +.|+||+|+++++..+++|||||||||||+||||||+.+++++|+++++|..+...+.+|.|+|
T Consensus 2 ~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CchhhhhcccCCCC--ceeEEEEhHHccccchhhCCchHHHHHHHHHhccCCcchhHHHHHHHhcccccCCCCCEEEEec
Confidence 67877677887653 4799999999987678999999999999999999999999999999999976655678999999
Q ss_pred ceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhcc
Q 002829 189 ARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWG 268 (875)
Q Consensus 189 drVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~ 268 (875)
|||+|||+||+|+++||++||++++++|.||.|+||.+||++|+||+||++.++..++..+|+.+||+||+|||.||||+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeCCCCceeccccccccceeeecCCCccccCeeeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecC
Q 002829 269 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 348 (875)
Q Consensus 269 ~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vP 348 (875)
+++|+||+|+|||+|||||||+||||+|||.++|+++|||||||||||||+||||+|||||||+|+|++|+|||+||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHhccCCCCCCCCCCCcceehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCChHHHHHH
Q 002829 349 GVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYL 428 (875)
Q Consensus 349 evVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 428 (875)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|+|||+|+||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCC-CCCcccEEEEEEcCCcceeccCCCCCCCcccCCCccccHHHHhhccccC
Q 002829 429 KLTGRSDETVSMIEEYLRANKMFVDYNEPE-QERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 507 (875)
Q Consensus 429 ~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D-~~a~Y~~vieiDLs~veP~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~ 507 (875)
+.|||++++++++|+|.+++++|++. .+| ++|.|+++|+||||+|||+||||++|||++||++++++|.+++..++++
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HhcCCchHHHHHHHHHHHHHHHHhcc-CCCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhccccc
Confidence 99999998899999999999999763 234 8999999999999999999999999999999999999998877665443
Q ss_pred CCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002829 508 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVT 587 (875)
Q Consensus 508 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~ 587 (875)
+|.....+.+.+.++++++|+++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred ccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHH
Confidence 33211101000123467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002829 588 KYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 667 (875)
Q Consensus 588 ~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp~~~~~YLASP~lVaA 667 (875)
+||+++||+++|+++||+|++|||++||||+++++++++++|++||+++++|+|+||||+||||+..+++|||||+||||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhccccCCCcCCcccCCCCCCceecCCC
Q 002829 668 YALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPN 747 (875)
Q Consensus 668 ~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y~Wd~~ 747 (875)
|||+|+|+||+++||||.++||++|||+||||+.+||++++.+.+++++|.+.|.+++.+++.|+.++++++.+|+||++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHhcCeeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhh
Q 002829 748 STYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVM 827 (875)
Q Consensus 748 StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm 827 (875)
||||++||||++|+.+|++++++.++|+|+++|||||||||||||+|+++||||+||+++||+++|||||||||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred cccccCCCCccccccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhccCCCCCCceEEcCCCeeecHHHHHHHHHHh
Q 002829 828 ARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMVSNMK 871 (875)
Q Consensus 828 ~RgtFan~r~~N~l~~~~~g~~t~~~p~g~~~~i~daa~~y~~~ 871 (875)
|||||+|+|++|+|++ +|||+|+|+|+|+.|+|||||++|++.
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~ 761 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQA 761 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHT
T ss_pred hhhccccccccccccc-ccCCceeecCCCccccchhhHHHHHhc
Confidence 9999999999999997 899999999999999999999999983
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=2.4e-153 Score=1341.12 Aligned_cols=577 Identities=30% Similarity=0.458 Sum_probs=510.7
Q ss_pred cHHHHHHHHhcccCCC------C-cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCC
Q 002829 164 TKDDVEKIIDWENTSP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSV 236 (875)
Q Consensus 164 ~~~~iekil~~~~~~~------~-~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv 236 (875)
.+++.|||++.+.... . +.+|.++||||++||+||+++++||++ +|.++ |.+|.++++||++
T Consensus 34 ~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-------~G~~~----v~~P~~~~~DH~v 102 (753)
T 1c96_A 34 PLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-------SGLPK----VAVPSTIHCDHLI 102 (753)
T ss_dssp CCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-------HTCSS----CSSCEEEECCSSC
T ss_pred CCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-------hCCCC----CCCCCceecCCCC
Confidence 3678999998776532 2 336999999999999999999999965 38774 4567789999999
Q ss_pred CCCcccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCCceeccccccccceeeecCCCccccC-eeeecCCC
Q 002829 237 QVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPD-SVVGTDSH 315 (875)
Q Consensus 237 ~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~GI~HQVnlE~la~vv~~~~G~~~Pd-tvVGTDSH 315 (875)
|++..++. ++..++++|.|+|+||+|++++| ||+|+|||+||||||++|+ +++|| ++||||||
T Consensus 103 ~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSH 166 (753)
T 1c96_A 103 EAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSH 166 (753)
T ss_dssp CBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTT
T ss_pred CCCCCccc-----chhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEeccc----------ccCCCcEEecCCCC
Confidence 99975533 35678999999999999999999 8999999999999999994 56897 79999999
Q ss_pred CcccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCCCCChhcHHHHHHHHHHhcCccceEEEEecCcCCC
Q 002829 316 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQ 395 (875)
Q Consensus 316 Ttm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtAkDlvL~i~~~Lr~~GvvGk~VEF~GpGv~~ 395 (875)
|||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++
T Consensus 167 T~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~ 246 (753)
T 1c96_A 167 TPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDS 246 (753)
T ss_dssp GGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGG
T ss_pred CCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhccccccCceeeeecCChHHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcc
Q 002829 396 LPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADVE 475 (875)
Q Consensus 396 LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~ve 475 (875)
||+++|||||||++|+|||+|+||+|++|++||+.+||++ .++++++|++ +| .+|++|.|+++++||||+||
T Consensus 247 LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~le 318 (753)
T 1c96_A 247 ISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSELK 318 (753)
T ss_dssp SCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGCC
T ss_pred CCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---hc----cCCCCCceeEEEEEEccccc
Confidence 9999999999999999999999999999999999999987 6788888876 45 46889999999999999999
Q ss_pred eeccCCCCCCCcccCCCccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHH
Q 002829 476 PCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVML 555 (875)
Q Consensus 476 P~VAgP~~P~d~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~ 555 (875)
|+||+|++|||++||++++..+.+ +++++ +|++||||||||||+|||+
T Consensus 319 P~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~~-----~Vd~~~IGSCTN~~~~Dl~- 366 (753)
T 1c96_A 319 PHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWPL-----DIRVGLIGSCTNSSYEDMG- 366 (753)
T ss_dssp CEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCCC-----BEEEEEEBTTTBCSHHHHH-
T ss_pred eeecCCCCCcceeEhHHhhhhHhh--------------------------cCCcc-----ceEEEEEecCCCCCHHHHH-
Confidence 999999999999999998865432 11221 5899999999999999955
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeE
Q 002829 556 GAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIV 635 (875)
Q Consensus 556 AA~lLak~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~ 635 (875)
+|+.|+|+|+++|++.+ ||++|+|||++|++||+++||+++|+++||.|++|||++||||+++.. + ..++-
T Consensus 367 ~AA~ilkga~~~~v~~~--V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~----~~~~~- 437 (753)
T 1c96_A 367 RSAAVAKQALAHGLKCK--SQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--I----KKGEK- 437 (753)
T ss_dssp HHHHHHHHHHTTTCCCS--SEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--S----CTTCC-
T ss_pred HHHHHhccHhhcCCCCC--ceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCcc--c----ccCCc-
Confidence 55667799999876554 999999999999999999999999999999999999999999998632 1 12222
Q ss_pred EEEEeccCCCCCCCCC-CCCCceEecCHHHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCCh
Q 002829 636 AAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLP 714 (875)
Q Consensus 636 ~~aVsSgNRNFeGR~g-p~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~ 714 (875)
.++|+|+||||+|||| ...+.+|||||+|||||||+|+|+||+.+||| .++||++|||+| |+.+|+.+
T Consensus 438 ~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~-------- 506 (753)
T 1c96_A 438 NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR-------- 506 (753)
T ss_dssp EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------
T ss_pred ceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCCCeeeecC--Cccchhhh--------
Confidence 1479999999999994 44478999999999999999999999999999 899999999999 99988643
Q ss_pred hhhhhhhccccCCCcCCcccCCCC-CCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCCCC
Q 002829 715 DMFKSTYEAITKGNPMWNQLSVPT-STLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGS 793 (875)
Q Consensus 715 ~~f~~~Y~~i~~g~~~w~~l~~~~-~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~ 793 (875)
++|. .+++.|+.++.+. +..|.|+|+||||+.||||++ |+..+++++|||+++||+||||||||||
T Consensus 507 ~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG- 573 (753)
T 1c96_A 507 AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAG- 573 (753)
T ss_dssp SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCG-
T ss_pred hhcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCC-----CCccccccceEEEeccCCcccccccccc-
Confidence 3343 4678899987765 689999999999999999974 5667999999999999999999999999
Q ss_pred CCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhccccccchhhhhccC--CCCCC---ceEEcCCCeeecHHHHHHHH
Q 002829 794 IHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN--GEVGP---KTVHIPTGEKLYVFDAAMVS 868 (875)
Q Consensus 794 I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~RgtFan~r~~N~l~~--~~~g~---~t~~~p~g~~~~i~daa~~y 868 (875)
+||.. ||||+|++ +|.|.+ +.+|| +|+|+|+||.++|||+|++|
T Consensus 574 --------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y 622 (753)
T 1c96_A 574 --------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYY 622 (753)
T ss_dssp --------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHH
T ss_pred --------hhhcc----------------------ccchhhhh-hhhccccccccCCCcceeEEecCCcccccHHHHHHH
Confidence 46655 58999999 999985 45666 99999999999999999999
Q ss_pred HHh
Q 002829 869 NMK 871 (875)
Q Consensus 869 ~~~ 871 (875)
++.
T Consensus 623 ~~~ 625 (753)
T 1c96_A 623 KQH 625 (753)
T ss_dssp HHH
T ss_pred HHh
Confidence 984
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.4e-101 Score=908.87 Aligned_cols=452 Identities=23% Similarity=0.346 Sum_probs=387.8
Q ss_pred CCCChhhhhHHhhhhcccCC---------------CcccHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHH
Q 002829 141 DRLPYSIRILLESAIRNCDN---------------FQVTKDDVEKIIDWENTSP---KQVEIPFKPARVLLQDFTGVPAV 202 (875)
Q Consensus 141 ~~lP~sirillE~~lR~~~~---------------~~v~~~~iekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~ 202 (875)
..+||-++-.|-.-.|..-| ....++.+|||++++.+.. .+..|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred ChhhhhhcchHHHHHHHHcCCCchhhccCCCCCCCCCCCccHHHHHHHHHhCCCccCCCCEEEEEeeEEEEeccCcHHH-
Confidence 56888888777655554222 1235789999999876532 3567999999999999999985
Q ss_pred HHHHHHHHHHHHcCCCCCccCCCCCEEEEeCCCCCCCcccchhHHHhchHHHHHHhhhhhhhhhccccccccceeeCCCC
Q 002829 203 VDLACMRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGS 282 (875)
Q Consensus 203 vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~RN~Ery~flkw~~~~f~ni~vvpPG~ 282 (875)
|++++++|.+ +++|+. +..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHcCCC--cCCCCe-EEEECCCCCcCCC---------HHHHHHHHHHHHHHHHcCC-------eEeCCCC
Confidence 6677778855 666665 5668999988763 3456788999999998886 4689999
Q ss_pred ceeccccccccceeeecCCCccccCe-eeecCCCCcccCccceeeccCCHHHHHHHHcCCeEEeecCcEEEEEEEccCCC
Q 002829 283 GIVHQVNLEYLGRVVFNTDGILYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRD 361 (875)
Q Consensus 283 GI~HQVnlE~la~vv~~~~G~~~Pdt-vVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~ 361 (875)
|||||++.| +++||+ +|||||||||+||| |+|.|++|++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~~~Gl---g~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHGG-----------GCCTTCEEEESSTTCCCSSSE---ECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred ceeeeeecc-----------cccccceEEeCCCCccccccc---eeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCC
Confidence 999998644 788975 69999999999975 457799999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHhcC------------ccceEEEEecCcCCCCChhhhhhhhccccccCceeeeecCC-hHHHHHH
Q 002829 362 GVTATDLVLTVTQMLRKHG------------VVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVD-HVTLQYL 428 (875)
Q Consensus 362 GVtAkDlvL~i~~~Lr~~G------------vvGk~VEF~GpGv~~LSv~dRaTIaNMa~E~GAt~g~Fp~D-e~Tl~YL 428 (875)
|||+|||||+|+++++++| ++||+||| +||++||+++|||||||++|+|||+|+||+| +.|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcccccccccCcccceeeEEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHH
Confidence 9999999999999887433 37999999 5799999999999999999999999999977 7789999
Q ss_pred hh----------cCCC-----chhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCc-ceeccCCCCCCCcccCCC
Q 002829 429 KL----------TGRS-----DETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKD 492 (875)
Q Consensus 429 ~~----------tgR~-----~~~~~l~e~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~d~v~lse 492 (875)
+. +||+ +++++.+++|++++++| .+|++|.|+++++||||+| ||+||+|++|||++|+++
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse 696 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSA 696 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGG
T ss_pred HhhhhhhhhhhccCCccchhHHHHHHHHHHHHhcccee----ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhh
Confidence 98 6874 35677889999999998 4688999999999999999 899999999999999999
Q ss_pred ccccHHHHhhccccCCCCCCCcccccccceeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 493 MKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
+++. +|++||||||||+ ++|++.||.+| ||++++
T Consensus 697 ~~~~---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~ 730 (865)
T 1l5j_A 697 VQGE---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQ 730 (865)
T ss_dssp TTTC---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSC
T ss_pred hccc---------------------------------------ccceEEEecCCCC-HHHHHHHHHHH------cCcccC
Confidence 8630 2458999999877 99999888888 788899
Q ss_pred CceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchhHhhhhccCCeEEEEEeccCCCCCCCCCC
Q 002829 573 PWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHP 652 (875)
Q Consensus 573 p~VktsvaPGS~~V~~~l~~~GLl~~L~~aGf~i~~~GCgtCiGnsg~l~~~~e~~i~~~~l~~~aVsSgNRNFeGR~gp 652 (875)
+.||++|+|||++|+++|+++|++++|+++||.|.+|||++||||++.+ .+|++ +++|+||||+||||+
T Consensus 731 ~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~ 799 (865)
T 1l5j_A 731 LPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGT 799 (865)
T ss_dssp CSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSST
T ss_pred CCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCcC--------CCCCE---EEecCCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999998654 46775 679999999999996
Q ss_pred CCCceEecCHHHHHHHHHhCccccCCCCCccccCCCCCceecccCCCChHHHHHHHHhcCChhhhhhhhc
Q 002829 653 LTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYE 722 (875)
Q Consensus 653 ~~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~VyL~diwPs~~Ei~~~~~~~v~~~~f~~~Y~ 722 (875)
. ..+|||||++||||||+|+| |+.+|+.+++++.++|. .+.|.
T Consensus 800 ~-~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~--~~~~~ 842 (865)
T 1l5j_A 800 G-ANVFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTA--VDTYR 842 (865)
T ss_dssp T-CEEEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTH--HHHTC
T ss_pred C-cceEECCHHHHHHHHhCCcC------------------------CCHHHHHHHHHhhcCCc--ccccc
Confidence 5 58999999999999999999 88999999999988883 34443
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=99.11 E-value=1.4e-13 Score=163.56 Aligned_cols=142 Identities=22% Similarity=0.301 Sum_probs=116.3
Q ss_pred CCCCCCCCCC------CCceEecCHHHHHHHHHhCccccCCCCCccccCCCCCce-ecccCCCChHHHH----HHHHh-c
Q 002829 644 RNFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGV-YFKDIWPSNEEIA----EVVQS-S 711 (875)
Q Consensus 644 RNFeGR~gp~------~~~~YLASP~lVaA~AlaG~I~id~~~eplg~~~~G~~V-yL~diwPs~~Ei~----~~~~~-~ 711 (875)
.=|++|+.|. ++++||+|| |.+++..+.|+.++.+|+||+...|..| +|.||| +.+|++ +.+++ .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhh
Confidence 3488999998 889999999 7799999999999999999999999999 899999 555555 77777 5
Q ss_pred CChhhhhhhhccccCCCcCCcccCCCCCCceecCCCCCCccCCCCCCCCCCCCCCCCCCCCcEEEEEecCCccccccCCC
Q 002829 712 VLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPA 791 (875)
Q Consensus 712 v~~~~f~~~Y~~i~~g~~~w~~l~~~~~~~y~Wd~~StYI~~PpfF~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPA 791 (875)
+-.++|.+.|+..+.||+.|+++ ++.|.+.+.|..+|+.- ..|++ ++ .++||+|.|||||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~v-~~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-TV-FKVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-EE-EEEEEEEEHHHHSCG
T ss_pred ccHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCCC----------ceEEE-EE-EecCCCCchhccCch
Confidence 56899999999999999999964 89999877555555442 23544 55 667999999999999
Q ss_pred CCC--CCCCh-HHHHHHH
Q 002829 792 GSI--HKDSP-AAKYLLE 806 (875)
Q Consensus 792 G~I--~~~s~-Ag~yL~~ 806 (875)
... ..+.+ .|+||.+
T Consensus 186 ~~l~~~~d~~~~a~~lf~ 203 (865)
T 1l5j_A 186 PDAWSRPDIPLHALAMLK 203 (865)
T ss_dssp GGGGGTTSHHHHGGGTTC
T ss_pred hhhhcCCCHHHHHHHHhh
Confidence 887 34444 5888876
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=98.35 E-value=7e-08 Score=99.42 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCCC--CCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCCCCCcccccCcCCchhhhcc
Q 002829 753 EPPYFKNMTMEPPGPHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARG 830 (875)
Q Consensus 753 ~PpfF~~~~~~~~~~~~i--~~arvL~~lGDsiTTDHISPAG~I~~~s~Ag~yL~~~gv~~~dfnsygsRRgNhevm~Rg 830 (875)
-.|||++++..+...+.+ ..++|+.+.||+|+||||+|| +||.. +++++ +.|+
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGG
T ss_pred cccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHH-------------HHHH
Confidence 358999998877665555 678999999999999999998 78864 55555 4899
Q ss_pred ccccchhhhhccCCCCC-CceEEcC
Q 002829 831 TFANIRIVNKLLNGEVG-PKTVHIP 854 (875)
Q Consensus 831 tFan~r~~N~l~~~~~g-~~t~~~p 854 (875)
+|+|.|++|+ +|.++ +|+...|
T Consensus 59 ~f~~~r~~~~--~g~~~p~f~~~~~ 81 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPDFIFNQP 81 (213)
T ss_dssp TTHHHHBSST--TCCBCTTSGGGSG
T ss_pred Hhhccccccc--CCCCCCCccccch
Confidence 9999999998 66665 4555443
No 6
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=91.24 E-value=0.077 Score=52.67 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=22.2
Q ss_pred EEEecCCccccccCCCCCCCCCC--hHHHHHHH
Q 002829 776 LLNFGDSITTDHISPAGSIHKDS--PAAKYLLE 806 (875)
Q Consensus 776 L~~lGDsiTTDHISPAG~I~~~s--~Ag~yL~~ 806 (875)
++++||+||||||+||.-..... -.|+|+.+
T Consensus 7 ~~~~~dnidTD~IiPa~~l~~~~~~~l~~~~f~ 39 (163)
T 1v7l_A 7 VWKFGDDISTDEITPGRYNLTKDPKELAKIAFI 39 (163)
T ss_dssp EEECCSCCBHHHHSCTTSCCCSCHHHHHHHTTT
T ss_pred EEEcCCCCChhccchHHHhCCCCHHHHHHHhCC
Confidence 67999999999999986544333 24555554
No 7
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=86.75 E-value=0.16 Score=50.60 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEecCCccccccCCCCCCCCCCh--HHHHHHH
Q 002829 776 LLNFGDSITTDHISPAGSIHKDSP--AAKYLLE 806 (875)
Q Consensus 776 L~~lGDsiTTDHISPAG~I~~~s~--Ag~yL~~ 806 (875)
++++||+|+||||+||.-.....+ .|+|+.+
T Consensus 7 v~~~~dnIdTD~IiPa~~l~~~~~~~l~~~~f~ 39 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPGPYLRTTDPYELASHCMA 39 (170)
T ss_dssp EEECCSCCBHHHHSCGGGGSCCCHHHHHTTTTT
T ss_pred EEECCCCCChhhcChHHHhCCCCHHHHHHHhcc
Confidence 688999999999999865543333 3444444
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=74.20 E-value=0.97 Score=45.43 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=23.3
Q ss_pred CcEEEEEecCCccccccCCCCCCCCCCh--HHHHHHH
Q 002829 772 DAYCLLNFGDSITTDHISPAGSIHKDSP--AAKYLLE 806 (875)
Q Consensus 772 ~arvL~~lGDsiTTDHISPAG~I~~~s~--Ag~yL~~ 806 (875)
..+|+ +|||+|+||+|.||--.....+ .|+|+.+
T Consensus 6 ~g~v~-~~gdnIdTD~IiPa~~l~~~~~~~l~~~~f~ 41 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILPARYLVYTKPEELAQFVMT 41 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSCGGGTTCCSHHHHGGGTTT
T ss_pred EEEEE-EeCCCcchhhcCcHHHhCcCCHHHHHHhhCc
Confidence 34675 8899999999999954443333 4556554
No 9
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=69.98 E-value=0.83 Score=45.77 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=26.8
Q ss_pred CCCcEEEEEecCCccccccCCCCCCCCC--ChHHHHHHH
Q 002829 770 VKDAYCLLNFGDSITTDHISPAGSIHKD--SPAAKYLLE 806 (875)
Q Consensus 770 i~~arvL~~lGDsiTTDHISPAG~I~~~--s~Ag~yL~~ 806 (875)
....+++.+.||+|.||||-||.-.... ...|+||.+
T Consensus 9 ~~~G~~~~l~~dnIdTD~IiPa~~L~~~~~~~l~~~~f~ 47 (171)
T 3h5j_A 9 THSGIGVPLRRSNVDTDQIIPAVFLKRVTRTGFEDGLFA 47 (171)
T ss_dssp EEEEEEEEECCCSCCHHHHSCGGGTTCCSCSCCGGGTTT
T ss_pred EEEEEEEEccCCccCcccCCchhhcCCCCHHHHHHHhhc
Confidence 3455888888999999999999854332 235666655
No 10
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=59.14 E-value=7.7 Score=35.96 Aligned_cols=33 Identities=39% Similarity=0.593 Sum_probs=26.5
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 539 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 539 iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
+++||+|.+|---..| ||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 6789999999766655 78888899999999887
No 11
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=57.97 E-value=7.9 Score=35.88 Aligned_cols=33 Identities=39% Similarity=0.511 Sum_probs=27.7
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 539 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 539 iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
+++||+|.+|---..| ||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHTYM-AAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 6899999999766554 78889899999899887
No 12
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=49.45 E-value=11 Score=35.33 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=27.7
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 539 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 539 iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
+++||+|..|---..| ||+.|-+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHTyM-AAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHTFM-AAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHHHH-HHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 7889999999766654 78888888999999887
No 13
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=45.66 E-value=13 Score=34.44 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=27.6
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002829 539 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 572 (875)
Q Consensus 539 iA~IgSCTN~s~~dlm~AA~lLak~A~~kGlkV~ 572 (875)
+++||+|.+|---..| ||+.|-+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTym-AAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTYM-AAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 6789999999766655 77888888889999887
No 14
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=31.03 E-value=15 Score=37.64 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=22.4
Q ss_pred CcEEEEEecCCccccccCCCCCCCC--CChHHHHHHH
Q 002829 772 DAYCLLNFGDSITTDHISPAGSIHK--DSPAAKYLLE 806 (875)
Q Consensus 772 ~arvL~~lGDsiTTDHISPAG~I~~--~s~Ag~yL~~ 806 (875)
..+++.+-+|+|.||+|-|+=-... -+-.|+||.+
T Consensus 11 ~G~a~~l~~dnIDTD~IIP~~fL~~~~~~~lg~~~f~ 47 (203)
T 3q3w_A 11 KGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH 47 (203)
T ss_dssp EEEEEEECCSSCBHHHHSCGGGCBSSCSSCSGGGTTH
T ss_pred EEEEEECCCcccChhhcchHHHcCcCCHHHHHHhhhh
Confidence 4467666669999999999843322 2335555544
Done!