BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002830
(875 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 47/227 (20%)
Query: 655 LLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASL 714
+ VDGP+G A++D +Y+V++LVG GIG TPF SIL+ + + + +L
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKY----------CNNATNL 50
Query: 715 XXXXXXXXXXXXXMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMD----QVAEMDLK 770
+ + YFYW+ R+ +FEWF ++ Q+ E +
Sbjct: 51 -----------------------KLKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNA 87
Query: 771 GQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRV 830
G + + YLT ++E A + H D+++G + +T + RPNW F +
Sbjct: 88 GFLSYNIYLTG-WDESQANHFAV-------HHDEEKDVITGLKQKTLYGRPNWDNEFKTI 139
Query: 831 ATKHPNATIGVFYCGMPVLAKELKK--LSHELTHRTSTRFEFHKEYF 875
A++HPN IGVF CG LA+ L K +S+ + F F+KE F
Sbjct: 140 ASQHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 186
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 106 bits (264), Expect = 7e-23, Method: Composition-based stats.
Identities = 52/109 (47%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Query: 129 RSGAKRALNGLRFISKTAGASDAEELWRLVESRFESLAEDGLLAREDFGECIGMVDTKEF 188
+S A AL GL+F++ G + W VE RF L DG+L R FG+CIGM + EF
Sbjct: 5 KSSAAVALKGLQFVTAKVG----NDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDGSDEF 60
Query: 189 AVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDE 237
AV +FD+LAR+RG +TK+EL++F+ Q++DQ FD RL+ FFD+VD+
Sbjct: 61 AVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDK 109
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 45 LNDLSRNSQ-----QEQAQDLVELTIELEDDAVVLCSVSTPTAPARVSRSSHGSRRKFGW 99
L+DL++ S+ Q AQ + DDA+ C V TPT A +G RR G
Sbjct: 346 LDDLAKPSEKAIHPQYLAQQISHFA---ADDAIFTCDVGTPTVWAARYLKMNGKRRLLGS 402
Query: 100 LRSGSSSDIEERTISAR---DERRIKA 123
GS ++ + + A+ ER++ A
Sbjct: 403 FNHGSMANAMPQALGAQATEPERQVVA 429
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 45 LNDLSRNSQ-----QEQAQDLVELTIELEDDAVVLCSVSTPTAPARVSRSSHGSRRKFGW 99
L+DL++ S+ Q AQ + DDA+ C V TPT A +G RR G
Sbjct: 346 LDDLAKPSEKAIHPQYLAQQISHFA---ADDAIFTCDVGTPTVWAARYLKMNGKRRLLGS 402
Query: 100 LRSGSSSDIEERTISAR---DERRIKA 123
GS ++ + + A+ ER++ A
Sbjct: 403 FNHGSMANAMPQALGAQATEPERQVVA 429
>pdb|2HTM|A Chain A, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|B Chain B, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|C Chain C, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|D Chain D, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 92 GSRRKFGWLRSG-SSSDIEERTISARDERRIKAKLQRARSGAKRALNGLRFISKTAGASD 150
G FG +R +++ E T+S R R++ K G AL G+R + TAGA
Sbjct: 20 GKYEDFGVMREAIAAAKAEVVTVSVR---RVELKAP-GHVGLLEALEGVRLLPNTAGART 75
Query: 151 AEELWRL 157
AEE RL
Sbjct: 76 AEEAVRL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,356,241
Number of Sequences: 62578
Number of extensions: 1027595
Number of successful extensions: 2004
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1996
Number of HSP's gapped (non-prelim): 8
length of query: 875
length of database: 14,973,337
effective HSP length: 107
effective length of query: 768
effective length of database: 8,277,491
effective search space: 6357113088
effective search space used: 6357113088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)